Query 010885
Match_columns 498
No_of_seqs 299 out of 1799
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:40:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04220 2-phosphoglycerate ki 100.0 6E-42 1.3E-46 345.5 25.9 283 68-459 4-296 (301)
2 COG2074 2-phosphoglycerate kin 100.0 1.7E-40 3.7E-45 327.1 22.3 272 79-458 9-292 (299)
3 PRK12337 2-phosphoglycerate ki 100.0 3.8E-40 8.3E-45 347.9 26.5 292 67-464 164-472 (475)
4 PRK12338 hypothetical protein; 99.9 1.5E-24 3.2E-29 221.1 15.9 195 158-457 2-208 (319)
5 PRK12339 2-phosphoglycerate ki 99.9 7.3E-23 1.6E-27 195.5 13.9 182 159-447 2-191 (197)
6 PF13671 AAA_33: AAA domain; P 98.9 4.3E-09 9.3E-14 92.3 8.3 85 162-264 1-85 (143)
7 PRK12337 2-phosphoglycerate ki 98.9 6E-09 1.3E-13 111.9 9.7 81 66-150 79-159 (475)
8 KOG3347 Predicted nucleotide k 98.9 3.2E-09 7E-14 99.5 6.4 84 162-266 9-94 (176)
9 PLN02200 adenylate kinase fami 98.9 4.2E-08 9.1E-13 96.3 14.4 44 158-201 41-84 (234)
10 COG0645 Predicted kinase [Gene 98.8 2.8E-08 6.1E-13 94.2 9.7 98 161-272 2-99 (170)
11 TIGR01359 UMP_CMP_kin_fam UMP- 98.8 3.2E-08 6.9E-13 91.0 9.2 39 162-200 1-39 (183)
12 PRK14531 adenylate kinase; Pro 98.7 1.1E-07 2.4E-12 88.8 10.2 42 160-201 2-43 (183)
13 PRK06762 hypothetical protein; 98.6 7.3E-08 1.6E-12 87.6 7.4 78 159-260 1-79 (166)
14 COG1102 Cmk Cytidylate kinase 98.6 1.7E-07 3.6E-12 89.0 9.2 81 161-257 1-81 (179)
15 PHA02530 pseT polynucleotide k 98.6 1.5E-07 3.3E-12 93.3 9.0 90 159-265 1-91 (300)
16 COG0552 FtsY Signal recognitio 98.6 2.6E-07 5.7E-12 95.6 10.4 106 89-199 72-182 (340)
17 PRK14532 adenylate kinase; Pro 98.6 3E-07 6.4E-12 85.4 9.7 39 162-200 2-40 (188)
18 PF13207 AAA_17: AAA domain; P 98.6 1.2E-07 2.5E-12 81.4 6.3 32 162-193 1-32 (121)
19 PRK14527 adenylate kinase; Pro 98.6 2.7E-07 5.9E-12 86.5 9.1 43 158-200 4-46 (191)
20 TIGR01360 aden_kin_iso1 adenyl 98.6 3.3E-07 7.1E-12 83.9 9.4 39 162-200 5-43 (188)
21 TIGR01351 adk adenylate kinase 98.5 2.9E-07 6.2E-12 87.7 9.0 38 163-200 2-39 (210)
22 COG0563 Adk Adenylate kinase a 98.5 3.1E-07 6.7E-12 87.1 8.5 81 162-257 2-86 (178)
23 PLN02674 adenylate kinase 98.5 6.8E-07 1.5E-11 89.0 10.9 85 158-257 29-117 (244)
24 PRK14974 cell division protein 98.5 4.6E-07 9.9E-12 94.0 10.0 106 89-197 70-181 (336)
25 PTZ00088 adenylate kinase 1; P 98.5 4.9E-07 1.1E-11 88.9 9.7 43 158-200 4-46 (229)
26 PF06414 Zeta_toxin: Zeta toxi 98.5 5.1E-07 1.1E-11 85.5 8.7 93 156-265 11-109 (199)
27 TIGR02173 cyt_kin_arch cytidyl 98.5 9.9E-07 2.1E-11 79.6 10.2 39 161-199 1-39 (171)
28 PRK00279 adk adenylate kinase; 98.5 8.2E-07 1.8E-11 84.9 9.6 40 162-201 2-41 (215)
29 cd01428 ADK Adenylate kinase ( 98.4 9.9E-07 2.1E-11 81.4 9.5 38 163-200 2-39 (194)
30 PRK14530 adenylate kinase; Pro 98.4 8.4E-07 1.8E-11 84.8 9.3 38 162-199 5-42 (215)
31 cd00227 CPT Chloramphenicol (C 98.4 9.1E-07 2E-11 81.9 9.2 90 161-259 3-95 (175)
32 PRK04182 cytidylate kinase; Pr 98.4 1.7E-06 3.8E-11 78.5 10.0 40 161-200 1-40 (180)
33 PRK04040 adenylate kinase; Pro 98.4 1.8E-06 3.9E-11 82.2 9.8 42 159-200 1-44 (188)
34 PLN02459 probable adenylate ki 98.3 1.9E-06 4.1E-11 86.8 9.6 83 159-256 28-116 (261)
35 PRK13808 adenylate kinase; Pro 98.3 1.2E-05 2.6E-10 83.6 14.8 39 162-200 2-40 (333)
36 PRK07261 topology modulation p 98.3 1E-06 2.2E-11 82.1 6.3 34 162-196 2-35 (171)
37 TIGR01663 PNK-3'Pase polynucle 98.3 1.7E-06 3.6E-11 94.6 8.7 71 157-265 366-436 (526)
38 PF00406 ADK: Adenylate kinase 98.3 2.1E-06 4.5E-11 77.4 7.9 78 165-257 1-82 (151)
39 PRK01184 hypothetical protein; 98.3 4.6E-06 1E-10 77.2 10.3 39 161-200 2-40 (184)
40 cd02021 GntK Gluconate kinase 98.3 1.5E-06 3.2E-11 77.7 6.4 35 162-197 1-35 (150)
41 PRK08118 topology modulation p 98.3 2.4E-06 5.2E-11 79.6 7.3 33 162-195 3-35 (167)
42 PRK06217 hypothetical protein; 98.2 2.6E-06 5.5E-11 79.6 7.3 36 161-197 2-37 (183)
43 PRK02496 adk adenylate kinase; 98.2 6.2E-06 1.3E-10 76.5 9.8 40 161-200 2-41 (184)
44 cd02027 APSK Adenosine 5'-phos 98.2 4.8E-06 1E-10 75.9 8.8 82 162-264 1-86 (149)
45 TIGR00455 apsK adenylylsulfate 98.2 1E-05 2.2E-10 75.3 11.1 82 158-260 16-101 (184)
46 PRK13946 shikimate kinase; Pro 98.2 6.9E-06 1.5E-10 77.0 10.0 41 159-200 9-49 (184)
47 TIGR01425 SRP54_euk signal rec 98.2 7.3E-06 1.6E-10 87.7 11.2 101 89-196 34-140 (429)
48 PRK14528 adenylate kinase; Pro 98.2 6.6E-06 1.4E-10 77.6 9.6 39 162-200 3-41 (186)
49 TIGR00064 ftsY signal recognit 98.2 7.1E-06 1.5E-10 82.5 10.4 98 89-196 10-112 (272)
50 PRK14529 adenylate kinase; Pro 98.2 4.2E-06 9.1E-11 82.4 8.3 80 162-256 2-84 (223)
51 TIGR01313 therm_gnt_kin carboh 98.2 5.6E-06 1.2E-10 75.1 8.4 80 163-262 1-83 (163)
52 cd02020 CMPK Cytidine monophos 98.2 6.6E-06 1.4E-10 72.2 8.3 31 162-193 1-31 (147)
53 PRK10867 signal recognition pa 98.2 4.6E-06 9.9E-11 89.3 8.5 102 89-197 34-142 (433)
54 TIGR03574 selen_PSTK L-seryl-t 98.2 6.6E-06 1.4E-10 80.3 9.0 77 162-262 1-81 (249)
55 PRK14526 adenylate kinase; Pro 98.2 8.4E-06 1.8E-10 79.2 9.2 39 162-200 2-40 (211)
56 PRK00131 aroK shikimate kinase 98.1 3.2E-06 7E-11 76.0 5.7 40 158-198 2-41 (175)
57 PRK10416 signal recognition pa 98.1 1.4E-05 3E-10 82.3 10.5 100 88-196 51-154 (318)
58 PRK12723 flagellar biosynthesi 98.1 3.9E-05 8.4E-10 81.3 14.0 98 89-197 114-219 (388)
59 PRK03839 putative kinase; Prov 98.1 2.7E-06 6E-11 78.6 4.8 36 162-197 2-37 (180)
60 PRK05541 adenylylsulfate kinas 98.1 8.2E-06 1.8E-10 75.2 7.6 43 157-199 4-50 (176)
61 PRK13948 shikimate kinase; Pro 98.1 1.8E-05 3.8E-10 75.5 10.0 43 157-200 7-49 (182)
62 PRK00625 shikimate kinase; Pro 98.1 1.6E-05 3.5E-10 75.1 9.4 38 162-199 2-39 (173)
63 PRK08233 hypothetical protein; 98.1 5.6E-06 1.2E-10 75.5 6.2 38 159-196 2-39 (182)
64 PRK08356 hypothetical protein; 98.1 1.3E-05 2.8E-10 75.7 8.3 40 160-200 5-44 (195)
65 COG0541 Ffh Signal recognition 98.0 9E-06 1.9E-10 86.9 7.5 98 89-197 34-141 (451)
66 KOG3354 Gluconate kinase [Carb 98.0 9E-06 2E-10 77.2 6.6 85 159-264 11-99 (191)
67 PRK00771 signal recognition pa 98.0 2.3E-05 5.1E-10 84.0 10.4 101 89-197 30-136 (437)
68 PRK05537 bifunctional sulfate 98.0 4.7E-05 1E-09 84.1 13.0 80 158-258 390-474 (568)
69 KOG3079 Uridylate kinase/adeny 98.0 1.8E-05 3.9E-10 76.5 8.5 86 157-256 5-94 (195)
70 PRK13947 shikimate kinase; Pro 98.0 2.6E-05 5.5E-10 71.1 9.0 36 162-198 3-38 (171)
71 TIGR00959 ffh signal recogniti 98.0 1.9E-05 4.1E-10 84.5 9.2 102 89-197 33-141 (428)
72 PRK12724 flagellar biosynthesi 98.0 2.2E-05 4.7E-10 84.2 9.5 101 89-197 160-265 (432)
73 COG4639 Predicted kinase [Gene 98.0 1.9E-05 4E-10 74.8 7.2 89 160-270 2-90 (168)
74 KOG0781 Signal recognition par 98.0 4.8E-05 1E-09 82.3 10.9 106 92-197 308-419 (587)
75 PF01583 APS_kinase: Adenylyls 97.9 2.7E-05 5.9E-10 73.1 7.8 85 159-264 1-89 (156)
76 PF07931 CPT: Chloramphenicol 97.9 4.5E-05 9.7E-10 72.6 9.1 95 161-263 2-97 (174)
77 cd00464 SK Shikimate kinase (S 97.9 6.2E-05 1.4E-09 66.8 9.4 35 163-198 2-36 (154)
78 TIGR00017 cmk cytidylate kinas 97.9 7.4E-05 1.6E-09 72.9 10.1 39 160-198 2-40 (217)
79 COG1936 Predicted nucleotide k 97.9 1.3E-05 2.8E-10 76.8 4.4 37 161-198 1-37 (180)
80 COG0703 AroK Shikimate kinase 97.9 7.5E-06 1.6E-10 78.1 2.7 38 161-198 3-40 (172)
81 PRK00889 adenylylsulfate kinas 97.9 0.00011 2.4E-09 67.7 10.2 42 159-200 3-48 (175)
82 PF13238 AAA_18: AAA domain; P 97.9 5.4E-05 1.2E-09 64.4 7.5 22 163-184 1-22 (129)
83 PRK13949 shikimate kinase; Pro 97.8 8.1E-05 1.8E-09 69.5 9.2 35 162-197 3-37 (169)
84 COG0529 CysC Adenylylsulfate k 97.8 4.7E-05 1E-09 73.6 7.6 44 157-200 20-67 (197)
85 PRK05506 bifunctional sulfate 97.8 4.3E-05 9.2E-10 84.8 8.4 85 158-263 458-546 (632)
86 PLN02748 tRNA dimethylallyltra 97.8 2.8E-05 6E-10 84.2 6.0 42 158-200 20-63 (468)
87 PRK03731 aroL shikimate kinase 97.8 0.00013 2.7E-09 66.8 9.4 38 162-200 4-41 (171)
88 KOG0780 Signal recognition par 97.8 6.8E-05 1.5E-09 79.6 8.6 101 89-200 35-145 (483)
89 PRK00091 miaA tRNA delta(2)-is 97.7 9.9E-05 2.1E-09 75.9 8.1 41 159-200 3-45 (307)
90 PRK06547 hypothetical protein; 97.7 4.6E-05 1E-09 71.8 5.3 39 157-196 12-50 (172)
91 PRK10078 ribose 1,5-bisphospho 97.7 3.3E-05 7.1E-10 72.4 3.9 30 161-190 3-32 (186)
92 PRK06696 uridine kinase; Valid 97.7 5E-05 1.1E-09 73.3 5.3 40 157-196 19-62 (223)
93 PRK11889 flhF flagellar biosyn 97.7 0.00024 5.1E-09 76.2 10.5 104 80-196 174-281 (436)
94 PRK05057 aroK shikimate kinase 97.7 0.00028 6.1E-09 66.0 9.7 39 160-199 4-42 (172)
95 TIGR03499 FlhF flagellar biosy 97.7 0.00016 3.4E-09 73.0 8.6 93 88-196 138-236 (282)
96 TIGR00152 dephospho-CoA kinase 97.6 0.00028 6.1E-09 66.1 9.1 39 162-200 1-39 (188)
97 PRK03846 adenylylsulfate kinas 97.6 0.00037 7.9E-09 66.1 9.9 44 157-200 21-68 (198)
98 PF08433 KTI12: Chromatin asso 97.6 0.00016 3.6E-09 72.9 7.5 80 162-264 3-86 (270)
99 PRK13973 thymidylate kinase; P 97.6 0.00048 1E-08 66.3 10.1 85 160-258 3-98 (213)
100 COG3265 GntK Gluconate kinase 97.6 0.00016 3.4E-09 68.2 6.5 48 166-213 1-50 (161)
101 PLN02199 shikimate kinase 97.6 0.00056 1.2E-08 70.6 10.9 41 160-200 102-142 (303)
102 PF00004 AAA: ATPase family as 97.5 7.8E-05 1.7E-09 63.7 3.9 27 163-189 1-27 (132)
103 TIGR03263 guanyl_kin guanylate 97.5 0.00015 3.4E-09 66.5 6.0 28 161-188 2-29 (180)
104 PRK08154 anaerobic benzoate ca 97.5 0.00022 4.8E-09 72.7 7.7 43 155-198 128-170 (309)
105 PLN02165 adenylate isopentenyl 97.5 0.00018 3.8E-09 75.1 7.0 37 158-195 41-77 (334)
106 PLN02840 tRNA dimethylallyltra 97.5 0.00016 3.4E-09 77.5 6.6 42 158-200 19-62 (421)
107 cd02022 DPCK Dephospho-coenzym 97.5 0.00011 2.5E-09 68.5 4.8 38 162-200 1-38 (179)
108 COG4088 Predicted nucleotide k 97.5 0.00025 5.4E-09 70.4 7.2 23 162-184 3-25 (261)
109 PRK14730 coaE dephospho-CoA ki 97.5 0.00014 3.1E-09 69.4 5.3 40 161-200 2-41 (195)
110 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00018 3.9E-09 75.7 6.5 96 89-186 3-104 (361)
111 PRK00081 coaE dephospho-CoA ki 97.4 0.00019 4.1E-09 68.2 5.6 40 160-200 2-41 (194)
112 COG0324 MiaA tRNA delta(2)-iso 97.4 0.0003 6.5E-09 72.7 7.1 95 159-261 2-105 (308)
113 PRK00023 cmk cytidylate kinase 97.4 0.00016 3.5E-09 70.6 4.8 38 160-197 4-41 (225)
114 cd01672 TMPK Thymidine monopho 97.4 0.0011 2.5E-08 60.5 9.7 29 161-189 1-32 (200)
115 PRK05703 flhF flagellar biosyn 97.4 0.00049 1.1E-08 73.6 8.2 92 89-196 166-263 (424)
116 smart00382 AAA ATPases associa 97.3 0.00019 4E-09 59.5 3.7 28 160-187 2-29 (148)
117 PRK05480 uridine/cytidine kina 97.3 0.00022 4.9E-09 67.6 4.7 38 158-195 4-43 (209)
118 PRK06995 flhF flagellar biosyn 97.3 0.00088 1.9E-08 73.1 9.3 80 88-184 200-280 (484)
119 PLN02842 nucleotide kinase 97.3 0.00066 1.4E-08 74.3 8.3 37 164-200 1-37 (505)
120 PRK14729 miaA tRNA delta(2)-is 97.3 0.00052 1.1E-08 70.6 6.9 40 159-200 3-44 (300)
121 COG0237 CoaE Dephospho-CoA kin 97.3 0.00038 8.2E-09 67.7 5.6 40 160-200 2-41 (201)
122 PRK14737 gmk guanylate kinase; 97.3 0.00084 1.8E-08 64.0 7.6 26 159-184 3-28 (186)
123 PRK00300 gmk guanylate kinase; 97.3 0.00067 1.5E-08 63.7 6.9 27 159-185 4-30 (205)
124 PRK13477 bifunctional pantoate 97.3 0.00024 5.3E-09 77.7 4.5 41 157-197 281-321 (512)
125 TIGR00041 DTMP_kinase thymidyl 97.3 0.0017 3.8E-08 60.3 9.5 26 160-185 3-28 (195)
126 PRK14733 coaE dephospho-CoA ki 97.2 0.00044 9.5E-09 67.4 5.5 42 158-199 4-45 (204)
127 TIGR00174 miaA tRNA isopenteny 97.2 0.00035 7.6E-09 71.4 5.1 96 162-265 1-105 (287)
128 PRK05439 pantothenate kinase; 97.2 0.00072 1.6E-08 69.9 7.3 49 148-196 71-128 (311)
129 PRK05800 cobU adenosylcobinami 97.2 0.00023 5E-09 67.0 3.3 27 161-187 2-28 (170)
130 PRK00698 tmk thymidylate kinas 97.2 0.0023 5.1E-08 59.5 9.9 25 160-184 3-27 (205)
131 PRK12726 flagellar biosynthesi 97.2 0.00074 1.6E-08 72.0 7.0 96 90-197 148-247 (407)
132 PRK11860 bifunctional 3-phosph 97.2 0.0019 4.2E-08 72.4 10.4 38 161-198 443-480 (661)
133 PRK13951 bifunctional shikimat 97.2 0.0017 3.7E-08 70.7 9.7 37 162-199 2-38 (488)
134 COG0572 Udk Uridine kinase [Nu 97.1 0.00041 8.8E-09 68.6 4.2 39 159-197 7-47 (218)
135 PF00448 SRP54: SRP54-type pro 97.1 0.00029 6.2E-09 67.8 3.0 38 160-197 1-42 (196)
136 COG0283 Cmk Cytidylate kinase 97.1 0.00064 1.4E-08 67.3 5.4 38 160-197 4-41 (222)
137 PF00485 PRK: Phosphoribulokin 97.1 0.00034 7.3E-09 66.0 3.4 24 162-185 1-24 (194)
138 PRK14721 flhF flagellar biosyn 97.1 0.0023 5E-08 68.7 10.1 81 87-184 135-215 (420)
139 cd02024 NRK1 Nicotinamide ribo 97.1 0.00038 8.2E-09 66.9 3.7 35 162-197 1-36 (187)
140 PF01591 6PF2K: 6-phosphofruct 97.1 0.0018 3.8E-08 64.1 8.5 96 158-265 10-112 (222)
141 PRK14021 bifunctional shikimat 97.1 0.002 4.4E-08 70.8 9.7 38 161-198 7-44 (542)
142 PRK14731 coaE dephospho-CoA ki 97.1 0.00081 1.7E-08 64.7 5.6 38 158-197 3-40 (208)
143 cd02019 NK Nucleoside/nucleoti 97.1 0.00041 9E-09 55.7 3.0 23 162-184 1-23 (69)
144 TIGR00554 panK_bact pantothena 97.1 0.0014 2.9E-08 67.2 7.2 41 145-185 44-87 (290)
145 PRK13975 thymidylate kinase; P 97.1 0.00056 1.2E-08 63.6 4.0 28 160-187 2-29 (196)
146 PRK14722 flhF flagellar biosyn 97.0 0.0032 6.9E-08 66.7 9.8 96 87-196 77-179 (374)
147 PRK14723 flhF flagellar biosyn 97.0 0.0022 4.8E-08 73.3 9.2 91 89-196 130-227 (767)
148 TIGR00390 hslU ATP-dependent p 97.0 0.0011 2.4E-08 71.4 6.3 34 157-190 44-77 (441)
149 PRK11545 gntK gluconate kinase 97.0 0.0014 3.1E-08 60.7 6.2 29 166-195 1-29 (163)
150 PTZ00301 uridine kinase; Provi 97.0 0.00049 1.1E-08 67.0 3.3 37 161-197 4-46 (210)
151 PF01745 IPT: Isopentenyl tran 97.0 0.00082 1.8E-08 66.8 4.7 35 161-196 2-36 (233)
152 PRK09270 nucleoside triphospha 97.0 0.0017 3.6E-08 63.1 6.5 30 156-185 29-58 (229)
153 TIGR00235 udk uridine kinase. 97.0 0.00089 1.9E-08 63.8 4.6 38 158-195 4-43 (207)
154 TIGR00763 lon ATP-dependent pr 96.9 0.0077 1.7E-07 68.9 12.6 102 88-189 251-376 (775)
155 PRK09518 bifunctional cytidyla 96.9 0.00077 1.7E-08 76.1 4.5 36 162-197 3-38 (712)
156 PRK07667 uridine kinase; Provi 96.9 0.00095 2.1E-08 63.3 4.4 27 159-185 16-42 (193)
157 PF07728 AAA_5: AAA domain (dy 96.9 0.00082 1.8E-08 59.3 3.7 27 163-189 2-28 (139)
158 PLN02348 phosphoribulokinase 96.9 0.0012 2.6E-08 70.4 5.3 31 155-185 44-74 (395)
159 PF13521 AAA_28: AAA domain; P 96.9 0.00086 1.9E-08 61.1 3.7 89 163-266 2-90 (163)
160 TIGR02881 spore_V_K stage V sp 96.9 0.0021 4.5E-08 63.5 6.7 26 159-184 41-66 (261)
161 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0026 5.5E-08 71.1 7.8 33 158-190 221-253 (802)
162 TIGR02322 phosphon_PhnN phosph 96.9 0.00095 2.1E-08 61.5 3.7 25 162-186 3-27 (179)
163 PRK14734 coaE dephospho-CoA ki 96.9 0.0017 3.6E-08 62.4 5.5 39 161-200 2-40 (200)
164 cd02028 UMPK_like Uridine mono 96.9 0.00076 1.7E-08 63.5 3.1 36 162-197 1-40 (179)
165 cd00009 AAA The AAA+ (ATPases 96.9 0.0028 6.2E-08 53.3 6.3 26 159-184 18-43 (151)
166 cd02023 UMPK Uridine monophosp 96.8 0.00092 2E-08 62.8 3.5 36 162-197 1-38 (198)
167 PF06309 Torsin: Torsin; Inte 96.8 0.0033 7.2E-08 57.6 7.0 29 156-184 49-77 (127)
168 CHL00195 ycf46 Ycf46; Provisio 96.8 0.01 2.3E-07 64.8 12.0 32 158-189 257-288 (489)
169 PRK12269 bifunctional cytidyla 96.8 0.0013 2.8E-08 76.2 5.3 38 161-198 35-72 (863)
170 PRK05201 hslU ATP-dependent pr 96.8 0.0022 4.7E-08 69.3 6.6 32 159-190 49-80 (443)
171 PRK14738 gmk guanylate kinase; 96.8 0.0011 2.4E-08 63.6 3.8 30 154-183 7-36 (206)
172 PRK15453 phosphoribulokinase; 96.8 0.0011 2.5E-08 68.0 4.0 40 158-197 3-46 (290)
173 PRK03992 proteasome-activating 96.8 0.002 4.3E-08 67.9 5.9 32 158-189 163-194 (389)
174 PF05496 RuvB_N: Holliday junc 96.7 0.0018 3.9E-08 64.7 4.8 30 160-189 50-79 (233)
175 COG1220 HslU ATP-dependent pro 96.7 0.0052 1.1E-07 64.9 8.2 72 105-189 8-79 (444)
176 PRK09825 idnK D-gluconate kina 96.7 0.0016 3.4E-08 61.4 4.0 33 161-194 4-36 (176)
177 TIGR01242 26Sp45 26S proteasom 96.7 0.0034 7.3E-08 65.1 6.8 32 158-189 154-185 (364)
178 smart00072 GuKc Guanylate kina 96.7 0.0014 3E-08 61.4 3.4 25 160-184 2-26 (184)
179 PTZ00454 26S protease regulato 96.7 0.0033 7.2E-08 66.9 6.4 32 158-189 177-208 (398)
180 PLN00020 ribulose bisphosphate 96.6 0.0021 4.6E-08 68.5 4.8 34 157-190 145-178 (413)
181 PRK05342 clpX ATP-dependent pr 96.6 0.0049 1.1E-07 65.9 7.5 30 161-190 109-138 (412)
182 PRK12727 flagellar biosynthesi 96.6 0.0065 1.4E-07 67.3 8.6 94 85-196 293-392 (559)
183 TIGR02880 cbbX_cfxQ probable R 96.6 0.0058 1.3E-07 61.8 7.6 24 161-184 59-82 (284)
184 PF01202 SKI: Shikimate kinase 96.6 0.0081 1.7E-07 55.1 7.8 29 169-197 1-29 (158)
185 PHA00729 NTP-binding motif con 96.6 0.0025 5.3E-08 63.4 4.6 27 159-185 16-42 (226)
186 TIGR00382 clpX endopeptidase C 96.6 0.0048 1E-07 66.2 7.0 30 161-190 117-146 (413)
187 TIGR00635 ruvB Holliday juncti 96.6 0.0055 1.2E-07 61.1 7.0 31 158-188 28-58 (305)
188 PF03215 Rad17: Rad17 cell cyc 96.6 0.0028 6.1E-08 69.7 5.2 31 159-189 44-74 (519)
189 PLN02422 dephospho-CoA kinase 96.5 0.0035 7.5E-08 62.4 5.4 38 162-200 3-40 (232)
190 PLN02924 thymidylate kinase 96.5 0.014 3E-07 57.3 9.5 28 158-185 14-41 (220)
191 PRK04195 replication factor C 96.5 0.0034 7.5E-08 67.7 5.7 32 158-189 37-68 (482)
192 CHL00181 cbbX CbbX; Provisiona 96.5 0.0057 1.2E-07 62.2 6.8 26 159-184 58-83 (287)
193 TIGR01618 phage_P_loop phage n 96.5 0.0054 1.2E-07 60.6 6.4 35 157-194 9-43 (220)
194 COG0466 Lon ATP-dependent Lon 96.5 0.015 3.4E-07 66.0 10.5 99 90-189 256-379 (782)
195 cd02025 PanK Pantothenate kina 96.5 0.0021 4.6E-08 62.7 3.4 24 162-185 1-24 (220)
196 PRK07429 phosphoribulokinase; 96.5 0.003 6.6E-08 65.6 4.5 29 157-185 5-33 (327)
197 PRK15455 PrkA family serine pr 96.4 0.0094 2E-07 66.7 8.3 96 88-185 20-128 (644)
198 PRK14961 DNA polymerase III su 96.4 0.0057 1.2E-07 63.7 6.3 31 157-187 35-65 (363)
199 PTZ00451 dephospho-CoA kinase; 96.4 0.0047 1E-07 61.8 5.4 40 161-200 2-41 (244)
200 PRK14962 DNA polymerase III su 96.4 0.0052 1.1E-07 66.7 6.1 32 156-187 32-63 (472)
201 KOG3078 Adenylate kinase [Nucl 96.4 0.0053 1.2E-07 61.5 5.6 42 159-200 14-55 (235)
202 PF05729 NACHT: NACHT domain 96.4 0.003 6.4E-08 55.8 3.3 24 161-184 1-24 (166)
203 KOG0635 Adenosine 5'-phosphosu 96.4 0.0032 6.9E-08 60.2 3.6 43 158-200 29-75 (207)
204 COG2019 AdkA Archaeal adenylat 96.3 0.013 2.8E-07 56.6 7.7 40 160-199 4-44 (189)
205 PTZ00361 26 proteosome regulat 96.3 0.0065 1.4E-07 65.6 6.3 32 158-189 215-246 (438)
206 PRK13342 recombination factor 96.3 0.0053 1.1E-07 64.9 5.5 34 156-189 32-65 (413)
207 KOG0730 AAA+-type ATPase [Post 96.3 0.0063 1.4E-07 68.3 6.3 33 158-190 466-498 (693)
208 PRK06761 hypothetical protein; 96.3 0.0039 8.5E-08 63.7 4.3 65 376-442 183-265 (282)
209 PRK09087 hypothetical protein; 96.3 0.0036 7.8E-08 61.4 3.8 88 162-265 46-133 (226)
210 PRK14732 coaE dephospho-CoA ki 96.3 0.005 1.1E-07 59.3 4.6 38 162-200 1-38 (196)
211 PF01121 CoaE: Dephospho-CoA k 96.3 0.0038 8.2E-08 59.5 3.7 37 161-198 1-37 (180)
212 cd01673 dNK Deoxyribonucleosid 96.3 0.0035 7.5E-08 58.5 3.3 27 162-188 1-27 (193)
213 cd00544 CobU Adenosylcobinamid 96.3 0.012 2.7E-07 55.5 7.0 26 162-187 1-26 (169)
214 KOG0743 AAA+-type ATPase [Post 96.2 0.0058 1.2E-07 66.1 5.2 42 162-203 237-285 (457)
215 TIGR02640 gas_vesic_GvpN gas v 96.2 0.0047 1E-07 61.4 4.3 28 162-189 23-50 (262)
216 PTZ00322 6-phosphofructo-2-kin 96.2 0.0074 1.6E-07 67.9 6.2 41 160-200 215-259 (664)
217 KOG3062 RNA polymerase II elon 96.2 0.014 2.9E-07 58.9 7.3 82 162-264 3-89 (281)
218 TIGR01243 CDC48 AAA family ATP 96.2 0.008 1.7E-07 68.1 6.5 32 158-189 485-516 (733)
219 COG1428 Deoxynucleoside kinase 96.2 0.0048 1E-07 61.0 4.1 31 160-190 4-34 (216)
220 PF00910 RNA_helicase: RNA hel 96.2 0.0034 7.4E-08 54.3 2.7 23 163-185 1-23 (107)
221 cd04155 Arl3 Arl3 subfamily. 96.2 0.0062 1.3E-07 54.7 4.4 34 150-183 4-37 (173)
222 TIGR03689 pup_AAA proteasome A 96.2 0.0071 1.5E-07 66.5 5.7 31 158-188 214-244 (512)
223 PRK08099 bifunctional DNA-bind 96.2 0.0064 1.4E-07 64.7 5.2 39 159-197 218-258 (399)
224 KOG0744 AAA+-type ATPase [Post 96.2 0.0034 7.4E-08 65.9 3.1 29 160-188 177-205 (423)
225 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.0069 1.5E-07 57.3 4.9 28 157-184 35-62 (226)
226 PRK00080 ruvB Holliday junctio 96.2 0.0055 1.2E-07 62.5 4.5 30 159-188 50-79 (328)
227 PHA02544 44 clamp loader, smal 96.2 0.0075 1.6E-07 60.5 5.3 33 156-188 39-71 (316)
228 KOG1384 tRNA delta(2)-isopente 96.1 0.0066 1.4E-07 63.5 5.0 94 159-264 6-112 (348)
229 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0054 1.2E-07 56.3 3.9 29 159-187 21-49 (133)
230 PRK11034 clpA ATP-dependent Cl 96.1 0.018 3.9E-07 66.1 8.8 32 158-189 485-517 (758)
231 TIGR02639 ClpA ATP-dependent C 96.1 0.018 3.9E-07 65.5 8.8 33 157-189 480-513 (731)
232 COG1618 Predicted nucleotide k 96.1 0.005 1.1E-07 59.1 3.7 27 158-184 3-29 (179)
233 PRK03333 coaE dephospho-CoA ki 96.1 0.0072 1.6E-07 64.1 5.1 38 162-200 3-40 (395)
234 TIGR01241 FtsH_fam ATP-depende 96.1 0.0056 1.2E-07 66.2 4.4 34 157-190 85-118 (495)
235 PRK14960 DNA polymerase III su 96.1 0.0091 2E-07 67.6 6.1 34 155-188 32-65 (702)
236 TIGR01650 PD_CobS cobaltochela 96.1 0.0049 1.1E-07 64.4 3.7 28 162-189 66-93 (327)
237 cd00071 GMPK Guanosine monopho 96.1 0.0043 9.3E-08 56.1 2.9 24 162-185 1-24 (137)
238 COG2256 MGS1 ATPase related to 96.1 0.0069 1.5E-07 64.9 4.9 105 150-266 38-148 (436)
239 PRK14955 DNA polymerase III su 96.1 0.0098 2.1E-07 62.8 6.0 32 156-187 34-65 (397)
240 PF00625 Guanylate_kin: Guanyl 96.0 0.0066 1.4E-07 56.7 4.0 26 160-185 2-27 (183)
241 TIGR01243 CDC48 AAA family ATP 96.0 0.01 2.2E-07 67.3 6.3 32 158-189 210-241 (733)
242 COG0464 SpoVK ATPases of the A 96.0 0.01 2.3E-07 63.7 6.0 34 157-190 273-306 (494)
243 PHA02575 1 deoxynucleoside mon 96.0 0.009 2E-07 59.6 5.0 40 161-201 1-41 (227)
244 PRK06620 hypothetical protein; 96.0 0.027 5.8E-07 54.9 8.2 28 161-188 45-72 (214)
245 PF13401 AAA_22: AAA domain; P 96.0 0.0053 1.2E-07 52.9 2.9 26 159-184 3-28 (131)
246 PRK12402 replication factor C 96.0 0.0078 1.7E-07 60.3 4.6 24 162-185 38-61 (337)
247 PRK14956 DNA polymerase III su 96.0 0.0092 2E-07 65.3 5.3 33 155-187 35-67 (484)
248 PF13191 AAA_16: AAA ATPase do 96.0 0.0065 1.4E-07 55.0 3.5 28 157-184 21-48 (185)
249 PHA02244 ATPase-like protein 96.0 0.013 2.7E-07 62.5 6.1 40 152-193 113-152 (383)
250 PRK10787 DNA-binding ATP-depen 95.9 0.063 1.4E-06 62.0 12.0 100 89-189 254-378 (784)
251 cd01120 RecA-like_NTPases RecA 95.9 0.0058 1.2E-07 53.3 2.8 23 162-184 1-23 (165)
252 PRK14958 DNA polymerase III su 95.9 0.013 2.8E-07 64.3 6.1 33 156-188 34-66 (509)
253 PRK09435 membrane ATPase/prote 95.9 0.017 3.6E-07 60.4 6.6 36 149-184 44-80 (332)
254 PRK14963 DNA polymerase III su 95.9 0.013 2.8E-07 64.3 5.9 32 156-187 32-63 (504)
255 COG1223 Predicted ATPase (AAA+ 95.9 0.01 2.3E-07 61.0 4.8 39 159-197 150-190 (368)
256 PRK08084 DNA replication initi 95.9 0.011 2.4E-07 57.9 4.9 27 159-185 44-70 (235)
257 PRK14949 DNA polymerase III su 95.8 0.013 2.8E-07 68.3 6.1 32 156-187 34-65 (944)
258 PRK14964 DNA polymerase III su 95.8 0.013 2.8E-07 64.2 5.8 33 155-187 30-62 (491)
259 PF08298 AAA_PrkA: PrkA AAA do 95.8 0.014 3.1E-07 61.6 5.7 95 89-185 3-113 (358)
260 PLN02318 phosphoribulokinase/u 95.8 0.0096 2.1E-07 66.8 4.7 38 158-195 63-100 (656)
261 KOG3220 Similar to bacterial d 95.8 0.05 1.1E-06 54.0 9.0 37 161-199 2-39 (225)
262 cd01131 PilT Pilus retraction 95.8 0.0081 1.8E-07 57.3 3.5 24 162-185 3-26 (198)
263 PRK06645 DNA polymerase III su 95.8 0.011 2.5E-07 64.8 5.1 34 155-188 38-71 (507)
264 PRK08116 hypothetical protein; 95.8 0.041 8.9E-07 55.4 8.7 38 160-197 114-156 (268)
265 PRK05896 DNA polymerase III su 95.8 0.015 3.2E-07 65.2 6.0 35 153-187 31-65 (605)
266 COG1072 CoaA Panthothenate kin 95.8 0.022 4.8E-07 58.4 6.7 30 155-184 77-106 (283)
267 PLN02796 D-glycerate 3-kinase 95.7 0.0095 2.1E-07 62.7 4.1 28 158-185 98-125 (347)
268 cd02029 PRK_like Phosphoribulo 95.7 0.0062 1.3E-07 62.3 2.6 36 162-197 1-40 (277)
269 PRK13974 thymidylate kinase; P 95.7 0.053 1.1E-06 52.3 8.9 26 160-185 3-28 (212)
270 PLN03025 replication factor C 95.7 0.011 2.4E-07 60.3 4.4 26 159-185 34-59 (319)
271 PF13189 Cytidylate_kin2: Cyti 95.7 0.026 5.7E-07 53.1 6.7 38 162-200 1-38 (179)
272 cd01130 VirB11-like_ATPase Typ 95.7 0.022 4.8E-07 53.6 6.1 26 160-185 25-50 (186)
273 KOG0733 Nuclear AAA ATPase (VC 95.7 0.019 4.1E-07 64.5 6.4 33 158-190 543-575 (802)
274 TIGR03015 pepcterm_ATPase puta 95.7 0.01 2.2E-07 57.7 3.9 27 159-185 42-68 (269)
275 PRK14969 DNA polymerase III su 95.7 0.018 3.8E-07 63.4 6.2 32 156-187 34-65 (527)
276 PRK14957 DNA polymerase III su 95.7 0.013 2.9E-07 64.9 5.2 33 155-187 33-65 (546)
277 CHL00176 ftsH cell division pr 95.7 0.014 3E-07 65.8 5.3 33 158-190 214-246 (638)
278 PF07724 AAA_2: AAA domain (Cd 95.7 0.012 2.6E-07 55.6 4.1 26 161-186 4-29 (171)
279 KOG1970 Checkpoint RAD17-RFC c 95.7 0.011 2.4E-07 65.5 4.3 31 159-189 109-139 (634)
280 PRK12377 putative replication 95.6 0.02 4.4E-07 57.4 5.9 25 160-184 101-125 (248)
281 TIGR03575 selen_PSTK_euk L-ser 95.6 0.0076 1.7E-07 63.2 2.9 24 162-185 1-24 (340)
282 KOG0738 AAA+-type ATPase [Post 95.6 0.025 5.5E-07 60.8 6.7 42 148-189 232-274 (491)
283 PRK13976 thymidylate kinase; P 95.6 0.065 1.4E-06 52.2 9.1 54 408-463 151-207 (209)
284 PRK07994 DNA polymerase III su 95.6 0.017 3.8E-07 65.2 5.8 33 154-186 32-64 (647)
285 COG1703 ArgK Putative periplas 95.6 0.034 7.4E-07 57.9 7.4 59 124-184 16-75 (323)
286 cd01918 HprK_C HprK/P, the bif 95.6 0.012 2.6E-07 55.1 3.8 32 161-194 15-46 (149)
287 TIGR01526 nadR_NMN_Atrans nico 95.5 0.013 2.9E-07 60.5 4.2 30 161-190 163-192 (325)
288 PF02223 Thymidylate_kin: Thym 95.5 0.052 1.1E-06 50.4 7.8 78 165-258 1-89 (186)
289 PRK06526 transposase; Provisio 95.5 0.026 5.6E-07 56.6 6.1 26 159-184 97-122 (254)
290 cd03115 SRP The signal recogni 95.5 0.012 2.6E-07 54.0 3.4 35 162-196 2-40 (173)
291 COG0194 Gmk Guanylate kinase [ 95.5 0.016 3.4E-07 56.5 4.3 30 159-188 3-32 (191)
292 PF13245 AAA_19: Part of AAA d 95.5 0.014 3.1E-07 48.3 3.5 25 160-184 10-35 (76)
293 PRK14952 DNA polymerase III su 95.5 0.023 4.9E-07 63.5 6.1 33 155-187 30-62 (584)
294 TIGR02397 dnaX_nterm DNA polym 95.5 0.021 4.5E-07 57.9 5.3 32 156-187 32-63 (355)
295 PF03266 NTPase_1: NTPase; In 95.4 0.012 2.6E-07 55.5 3.3 26 162-187 1-29 (168)
296 PF13086 AAA_11: AAA domain; P 95.4 0.012 2.6E-07 54.5 3.2 25 160-184 17-41 (236)
297 PRK14951 DNA polymerase III su 95.4 0.024 5.2E-07 63.8 6.1 32 156-187 34-65 (618)
298 PF13173 AAA_14: AAA domain 95.4 0.024 5.2E-07 50.0 4.9 25 161-185 3-27 (128)
299 PRK10751 molybdopterin-guanine 95.4 0.014 3E-07 55.8 3.6 27 159-185 5-31 (173)
300 PRK14954 DNA polymerase III su 95.4 0.025 5.4E-07 63.6 6.1 35 154-188 32-66 (620)
301 cd01983 Fer4_NifH The Fer4_Nif 95.4 0.018 4E-07 45.8 3.8 31 162-192 1-34 (99)
302 PTZ00202 tuzin; Provisional 95.4 0.13 2.9E-06 56.5 11.3 43 159-201 285-332 (550)
303 COG1219 ClpX ATP-dependent pro 95.4 0.016 3.5E-07 61.0 4.1 29 162-190 99-127 (408)
304 COG0470 HolB ATPase involved i 95.4 0.022 4.7E-07 56.5 4.9 32 157-188 21-52 (325)
305 PF07726 AAA_3: ATPase family 95.3 0.01 2.3E-07 54.7 2.4 39 163-201 2-43 (131)
306 KOG0737 AAA+-type ATPase [Post 95.3 0.022 4.8E-07 60.5 5.1 33 157-189 124-156 (386)
307 COG2255 RuvB Holliday junction 95.3 0.035 7.6E-07 57.6 6.4 30 159-188 51-80 (332)
308 KOG0731 AAA+-type ATPase conta 95.3 0.024 5.3E-07 64.9 5.7 34 157-190 341-374 (774)
309 PF13479 AAA_24: AAA domain 95.3 0.016 3.4E-07 55.9 3.7 22 159-180 2-23 (213)
310 PRK14970 DNA polymerase III su 95.3 0.024 5.2E-07 58.6 5.2 32 156-187 35-66 (367)
311 cd02026 PRK Phosphoribulokinas 95.3 0.015 3.2E-07 58.8 3.6 24 162-185 1-24 (273)
312 COG4240 Predicted kinase [Gene 95.3 0.019 4E-07 58.2 4.1 29 156-184 46-74 (300)
313 PLN03046 D-glycerate 3-kinase; 95.3 0.018 3.8E-07 62.5 4.1 26 159-184 211-236 (460)
314 TIGR00678 holB DNA polymerase 95.3 0.027 5.8E-07 52.6 4.9 34 154-187 8-41 (188)
315 PF08303 tRNA_lig_kinase: tRNA 95.2 0.014 3.1E-07 55.8 3.0 33 162-195 1-34 (168)
316 PRK08939 primosomal protein Dn 95.2 0.12 2.6E-06 53.3 10.0 40 159-198 155-199 (306)
317 PRK12323 DNA polymerase III su 95.2 0.03 6.5E-07 63.6 6.0 32 156-187 34-65 (700)
318 PRK09111 DNA polymerase III su 95.2 0.03 6.5E-07 62.7 6.1 34 155-188 41-74 (598)
319 PRK06835 DNA replication prote 95.2 0.079 1.7E-06 55.2 8.7 24 161-184 184-207 (329)
320 PRK08903 DnaA regulatory inact 95.2 0.024 5.1E-07 54.4 4.5 26 159-184 41-66 (227)
321 KOG0739 AAA+-type ATPase [Post 95.2 0.025 5.5E-07 59.2 4.8 52 148-199 153-207 (439)
322 PRK08691 DNA polymerase III su 95.2 0.025 5.5E-07 64.4 5.2 33 156-188 34-66 (709)
323 KOG1969 DNA replication checkp 95.2 0.018 3.9E-07 65.6 4.0 29 161-189 327-355 (877)
324 cd01124 KaiC KaiC is a circadi 95.2 0.016 3.4E-07 53.1 3.0 23 162-184 1-23 (187)
325 PF08477 Miro: Miro-like prote 95.2 0.018 4E-07 48.7 3.2 24 162-185 1-24 (119)
326 COG1222 RPT1 ATP-dependent 26S 95.2 0.018 4E-07 61.1 3.8 40 158-197 183-224 (406)
327 TIGR02928 orc1/cdc6 family rep 95.2 0.032 7E-07 56.9 5.5 28 157-184 37-64 (365)
328 PRK13341 recombination factor 95.1 0.026 5.6E-07 64.6 5.3 32 157-188 49-80 (725)
329 PRK07952 DNA replication prote 95.1 0.072 1.6E-06 53.3 7.8 24 161-184 100-123 (244)
330 KOG3308 Uncharacterized protei 95.1 0.018 4E-07 57.0 3.5 39 159-197 3-41 (225)
331 PF00931 NB-ARC: NB-ARC domain 95.1 0.026 5.7E-07 55.1 4.5 26 158-183 17-42 (287)
332 PRK14953 DNA polymerase III su 95.1 0.038 8.2E-07 60.4 6.1 33 155-187 33-65 (486)
333 cd00820 PEPCK_HprK Phosphoenol 95.1 0.025 5.4E-07 50.3 3.8 21 161-181 16-36 (107)
334 cd02030 NDUO42 NADH:Ubiquinone 95.1 0.021 4.6E-07 55.2 3.7 28 162-189 1-28 (219)
335 KOG2004 Mitochondrial ATP-depe 95.0 0.039 8.5E-07 62.9 6.2 56 133-188 407-466 (906)
336 PRK14490 putative bifunctional 95.0 0.02 4.3E-07 59.9 3.7 28 158-185 3-30 (369)
337 PRK09183 transposase/IS protei 95.0 0.036 7.9E-07 55.5 5.4 25 160-184 102-126 (259)
338 CHL00095 clpC Clp protease ATP 95.0 0.07 1.5E-06 61.6 8.4 29 156-184 534-563 (821)
339 PRK05563 DNA polymerase III su 95.0 0.04 8.7E-07 61.1 6.2 32 157-188 35-66 (559)
340 PRK09112 DNA polymerase III su 95.0 0.041 8.9E-07 57.7 6.0 37 150-186 35-71 (351)
341 PRK07133 DNA polymerase III su 95.0 0.036 7.7E-07 63.4 5.9 35 154-188 34-68 (725)
342 PRK14950 DNA polymerase III su 95.0 0.039 8.5E-07 61.3 6.1 32 156-187 34-65 (585)
343 PF00005 ABC_tran: ABC transpo 95.0 0.018 3.8E-07 50.4 2.7 25 160-184 11-35 (137)
344 PRK05416 glmZ(sRNA)-inactivati 95.0 0.027 5.9E-07 57.6 4.4 29 160-189 6-34 (288)
345 COG0125 Tmk Thymidylate kinase 95.0 0.19 4.2E-06 49.4 10.1 85 159-258 2-97 (208)
346 PF03205 MobB: Molybdopterin g 95.0 0.022 4.7E-07 52.2 3.3 23 162-184 2-24 (140)
347 PRK07003 DNA polymerase III su 94.9 0.041 8.8E-07 63.4 6.1 33 156-188 34-66 (830)
348 cd01878 HflX HflX subfamily. 94.9 0.061 1.3E-06 50.3 6.3 23 161-183 42-64 (204)
349 PRK00411 cdc6 cell division co 94.9 0.041 8.9E-07 56.8 5.7 28 157-184 52-79 (394)
350 PRK13768 GTPase; Provisional 94.9 0.023 5E-07 56.5 3.7 26 159-184 1-26 (253)
351 PRK07940 DNA polymerase III su 94.9 0.047 1E-06 58.2 6.1 29 159-187 35-63 (394)
352 KOG0734 AAA+-type ATPase conta 94.9 0.051 1.1E-06 60.5 6.4 36 157-192 334-369 (752)
353 cd01394 radB RadB. The archaea 94.9 0.027 5.9E-07 53.6 3.9 27 158-184 17-43 (218)
354 TIGR03345 VI_ClpV1 type VI sec 94.9 0.072 1.6E-06 62.0 8.0 28 157-184 592-620 (852)
355 COG1855 ATPase (PilT family) [ 94.9 0.019 4E-07 62.7 3.0 24 161-184 264-287 (604)
356 COG1484 DnaC DNA replication p 94.9 0.083 1.8E-06 53.0 7.4 40 159-198 104-148 (254)
357 PRK13695 putative NTPase; Prov 94.8 0.025 5.5E-07 52.2 3.4 24 161-184 1-24 (174)
358 cd04163 Era Era subfamily. Er 94.8 0.027 5.9E-07 48.6 3.4 23 160-182 3-25 (168)
359 PRK06893 DNA replication initi 94.8 0.025 5.4E-07 55.2 3.4 23 162-184 41-63 (229)
360 TIGR00101 ureG urease accessor 94.8 0.031 6.6E-07 53.8 3.9 25 160-184 1-25 (199)
361 PF02367 UPF0079: Uncharacteri 94.8 0.035 7.6E-07 50.4 4.1 31 158-188 13-43 (123)
362 PF13476 AAA_23: AAA domain; P 94.8 0.024 5.1E-07 51.7 3.0 29 159-187 18-46 (202)
363 PRK14965 DNA polymerase III su 94.7 0.053 1.2E-06 60.3 6.2 32 156-187 34-65 (576)
364 PRK05973 replicative DNA helic 94.7 0.15 3.3E-06 51.0 8.8 25 160-184 64-88 (237)
365 PRK10865 protein disaggregatio 94.7 0.093 2E-06 61.1 8.3 28 157-184 594-622 (857)
366 PRK00440 rfc replication facto 94.7 0.038 8.1E-07 54.9 4.5 24 162-185 40-63 (319)
367 COG0714 MoxR-like ATPases [Gen 94.7 0.031 6.7E-07 57.2 3.9 27 162-188 45-71 (329)
368 PRK07764 DNA polymerase III su 94.7 0.049 1.1E-06 63.2 5.9 32 156-187 33-64 (824)
369 COG1419 FlhF Flagellar GTP-bin 94.7 0.028 6E-07 60.3 3.7 39 159-197 202-246 (407)
370 PRK06647 DNA polymerase III su 94.6 0.043 9.2E-07 61.1 5.2 34 154-187 32-65 (563)
371 TIGR02237 recomb_radB DNA repa 94.6 0.037 8E-07 52.2 4.1 26 159-184 11-36 (209)
372 COG1126 GlnQ ABC-type polar am 94.6 0.026 5.7E-07 56.5 3.1 23 160-182 28-50 (240)
373 TIGR00073 hypB hydrogenase acc 94.6 0.04 8.7E-07 52.6 4.2 28 158-185 20-47 (207)
374 COG4185 Uncharacterized protei 94.6 0.047 1E-06 52.6 4.6 85 159-266 1-86 (187)
375 TIGR00231 small_GTP small GTP- 94.5 0.038 8.3E-07 46.8 3.5 24 161-184 2-25 (161)
376 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.4 0.033 7.1E-07 52.9 3.3 25 160-184 30-54 (218)
377 TIGR00176 mobB molybdopterin-g 94.4 0.03 6.6E-07 52.0 2.9 23 162-184 1-23 (155)
378 PRK04296 thymidine kinase; Pro 94.4 0.038 8.3E-07 52.5 3.6 24 161-184 3-26 (190)
379 cd03269 ABC_putative_ATPase Th 94.4 0.035 7.6E-07 52.5 3.3 26 159-184 25-50 (210)
380 cd03292 ABC_FtsE_transporter F 94.4 0.035 7.6E-07 52.5 3.3 26 159-184 26-51 (214)
381 cd04154 Arl2 Arl2 subfamily. 94.4 0.046 1E-06 49.6 4.0 27 157-183 11-37 (173)
382 PRK06305 DNA polymerase III su 94.4 0.056 1.2E-06 58.4 5.3 32 156-187 35-66 (451)
383 PF06068 TIP49: TIP49 C-termin 94.4 0.069 1.5E-06 57.1 5.8 30 160-189 50-81 (398)
384 PRK08181 transposase; Validate 94.4 0.097 2.1E-06 53.1 6.6 25 160-184 106-130 (269)
385 PRK06921 hypothetical protein; 94.4 0.13 2.9E-06 51.8 7.5 25 160-184 117-141 (266)
386 COG1162 Predicted GTPases [Gen 94.3 0.085 1.8E-06 54.7 6.2 27 159-185 163-189 (301)
387 PRK14959 DNA polymerase III su 94.3 0.068 1.5E-06 60.3 5.9 31 157-187 35-65 (624)
388 TIGR02315 ABC_phnC phosphonate 94.3 0.036 7.8E-07 53.5 3.3 25 160-184 28-52 (243)
389 cd01129 PulE-GspE PulE/GspE Th 94.3 0.086 1.9E-06 53.0 6.1 24 162-185 82-105 (264)
390 TIGR00750 lao LAO/AO transport 94.3 0.043 9.4E-07 55.8 4.0 35 150-184 23-58 (300)
391 PRK07471 DNA polymerase III su 94.3 0.078 1.7E-06 55.9 6.0 36 152-187 33-68 (365)
392 cd03256 ABC_PhnC_transporter A 94.3 0.037 8E-07 53.3 3.3 26 159-184 26-51 (241)
393 TIGR00960 3a0501s02 Type II (G 94.3 0.037 8.1E-07 52.6 3.2 25 160-184 29-53 (216)
394 cd03116 MobB Molybdenum is an 94.3 0.044 9.6E-07 51.3 3.7 24 161-184 2-25 (159)
395 cd00879 Sar1 Sar1 subfamily. 94.3 0.065 1.4E-06 49.2 4.7 25 158-182 17-41 (190)
396 TIGR02673 FtsE cell division A 94.3 0.038 8.3E-07 52.3 3.3 25 160-184 28-52 (214)
397 cd03224 ABC_TM1139_LivF_branch 94.3 0.037 8E-07 52.6 3.2 26 159-184 25-50 (222)
398 KOG0741 AAA+-type ATPase [Post 94.2 0.13 2.7E-06 57.5 7.5 69 121-189 477-567 (744)
399 PF01443 Viral_helicase1: Vira 94.2 0.032 6.9E-07 52.9 2.7 22 163-184 1-22 (234)
400 TIGR01166 cbiO cobalt transpor 94.2 0.039 8.5E-07 51.5 3.2 25 160-184 18-42 (190)
401 PF00437 T2SE: Type II/IV secr 94.2 0.043 9.4E-07 54.1 3.7 26 160-185 127-152 (270)
402 cd03264 ABC_drug_resistance_li 94.2 0.036 7.8E-07 52.5 3.0 23 162-184 27-49 (211)
403 cd03225 ABC_cobalt_CbiO_domain 94.2 0.04 8.8E-07 52.0 3.3 26 159-184 26-51 (211)
404 KOG0989 Replication factor C, 94.2 0.058 1.3E-06 56.5 4.6 27 162-188 59-85 (346)
405 cd03261 ABC_Org_Solvent_Resist 94.2 0.04 8.7E-07 53.1 3.3 25 160-184 26-50 (235)
406 TIGR02782 TrbB_P P-type conjug 94.1 0.11 2.4E-06 53.2 6.6 24 161-184 133-156 (299)
407 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.045 9.7E-07 54.6 3.7 25 159-183 35-59 (259)
408 cd03226 ABC_cobalt_CbiO_domain 94.1 0.042 9E-07 51.9 3.2 26 159-184 25-50 (205)
409 cd03263 ABC_subfamily_A The AB 94.1 0.042 9.1E-07 52.3 3.3 25 160-184 28-52 (220)
410 PRK14948 DNA polymerase III su 94.1 0.059 1.3E-06 60.6 4.9 30 158-187 36-65 (620)
411 PRK05564 DNA polymerase III su 94.1 0.072 1.6E-06 54.1 5.1 36 152-187 18-53 (313)
412 cd03259 ABC_Carb_Solutes_like 94.1 0.043 9.3E-07 52.0 3.3 25 160-184 26-50 (213)
413 PF03477 ATP-cone: ATP cone do 94.1 0.21 4.6E-06 41.6 7.1 76 80-156 9-89 (90)
414 PF03193 DUF258: Protein of un 94.1 0.044 9.5E-07 52.0 3.3 26 160-185 35-60 (161)
415 cd03262 ABC_HisP_GlnQ_permease 94.1 0.044 9.6E-07 51.8 3.3 26 159-184 25-50 (213)
416 KOG0651 26S proteasome regulat 94.1 0.082 1.8E-06 55.6 5.4 33 158-190 164-196 (388)
417 cd01895 EngA2 EngA2 subfamily. 94.1 0.049 1.1E-06 47.7 3.3 24 160-183 2-25 (174)
418 PRK13764 ATPase; Provisional 94.0 0.077 1.7E-06 59.7 5.6 26 160-185 257-282 (602)
419 cd03258 ABC_MetN_methionine_tr 94.0 0.044 9.6E-07 52.7 3.3 26 159-184 30-55 (233)
420 PF01078 Mg_chelatase: Magnesi 94.0 0.043 9.3E-07 54.1 3.2 23 162-184 24-46 (206)
421 cd03219 ABC_Mj1267_LivG_branch 94.0 0.041 8.9E-07 52.9 3.0 25 160-184 26-50 (236)
422 TIGR03608 L_ocin_972_ABC putat 94.0 0.046 1E-06 51.4 3.3 25 160-184 24-48 (206)
423 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.045 9.8E-07 52.3 3.3 26 159-184 29-54 (220)
424 cd03273 ABC_SMC2_euk Eukaryoti 94.0 0.051 1.1E-06 53.3 3.7 28 159-186 24-51 (251)
425 cd03260 ABC_PstB_phosphate_tra 94.0 0.049 1.1E-06 52.2 3.5 26 159-184 25-50 (227)
426 PF01695 IstB_IS21: IstB-like 94.0 0.053 1.1E-06 51.4 3.6 39 159-197 46-89 (178)
427 PRK09361 radB DNA repair and r 94.0 0.058 1.3E-06 51.7 3.9 27 158-184 21-47 (225)
428 KOG0741 AAA+-type ATPase [Post 94.0 0.092 2E-06 58.5 5.8 25 162-186 258-282 (744)
429 cd03235 ABC_Metallic_Cations A 94.0 0.043 9.3E-07 52.0 3.0 26 159-184 24-49 (213)
430 PRK11331 5-methylcytosine-spec 94.0 0.044 9.5E-07 59.8 3.4 27 160-186 194-220 (459)
431 PF01926 MMR_HSR1: 50S ribosom 93.9 0.048 1E-06 46.6 3.0 20 163-182 2-21 (116)
432 cd03265 ABC_DrrA DrrA is the A 93.9 0.049 1.1E-06 52.0 3.3 26 159-184 25-50 (220)
433 TIGR03410 urea_trans_UrtE urea 93.9 0.047 1E-06 52.4 3.2 26 159-184 25-50 (230)
434 TIGR02211 LolD_lipo_ex lipopro 93.9 0.049 1.1E-06 51.9 3.3 26 159-184 30-55 (221)
435 PF13555 AAA_29: P-loop contai 93.9 0.066 1.4E-06 43.4 3.5 23 162-184 25-47 (62)
436 TIGR02524 dot_icm_DotB Dot/Icm 93.9 0.049 1.1E-06 57.4 3.5 24 161-184 135-158 (358)
437 COG1116 TauB ABC-type nitrate/ 93.9 0.048 1E-06 55.2 3.3 25 160-184 29-53 (248)
438 PF10662 PduV-EutP: Ethanolami 93.9 0.048 1E-06 50.9 3.1 21 162-182 3-23 (143)
439 COG3839 MalK ABC-type sugar tr 93.9 0.046 9.9E-07 57.5 3.3 24 161-184 30-53 (338)
440 cd03301 ABC_MalK_N The N-termi 93.9 0.051 1.1E-06 51.4 3.3 25 160-184 26-50 (213)
441 cd03283 ABC_MutS-like MutS-lik 93.9 0.05 1.1E-06 52.3 3.3 22 161-182 26-47 (199)
442 PRK11629 lolD lipoprotein tran 93.9 0.05 1.1E-06 52.5 3.3 26 159-184 34-59 (233)
443 TIGR03346 chaperone_ClpB ATP-d 93.9 0.15 3.2E-06 59.3 7.6 28 157-184 591-619 (852)
444 PRK12608 transcription termina 93.9 0.18 3.9E-06 53.9 7.6 24 161-184 134-157 (380)
445 PRK06851 hypothetical protein; 93.8 0.073 1.6E-06 56.5 4.7 27 158-184 212-238 (367)
446 cd03230 ABC_DR_subfamily_A Thi 93.8 0.053 1.1E-06 50.2 3.3 25 160-184 26-50 (173)
447 PRK10584 putative ABC transpor 93.8 0.051 1.1E-06 52.1 3.3 26 159-184 35-60 (228)
448 PRK13541 cytochrome c biogenes 93.8 0.052 1.1E-06 51.1 3.3 26 159-184 25-50 (195)
449 cd04138 H_N_K_Ras_like H-Ras/N 93.8 0.061 1.3E-06 47.0 3.5 22 162-183 3-24 (162)
450 cd04119 RJL RJL (RabJ-Like) su 93.8 0.055 1.2E-06 47.5 3.2 22 162-183 2-23 (168)
451 PRK08451 DNA polymerase III su 93.8 0.082 1.8E-06 58.7 5.3 34 154-187 30-63 (535)
452 TIGR01420 pilT_fam pilus retra 93.8 0.054 1.2E-06 56.2 3.6 25 161-185 123-147 (343)
453 TIGR01978 sufC FeS assembly AT 93.8 0.051 1.1E-06 52.4 3.2 24 160-183 26-49 (243)
454 COG0378 HypB Ni2+-binding GTPa 93.8 0.063 1.4E-06 52.8 3.8 39 157-196 9-52 (202)
455 CHL00206 ycf2 Ycf2; Provisiona 93.8 0.057 1.2E-06 67.1 4.3 38 158-195 1628-1667(2281)
456 cd03296 ABC_CysA_sulfate_impor 93.8 0.052 1.1E-06 52.6 3.3 26 159-184 27-52 (239)
457 cd04159 Arl10_like Arl10-like 93.8 0.049 1.1E-06 46.9 2.8 20 163-182 2-21 (159)
458 TIGR03864 PQQ_ABC_ATP ABC tran 93.8 0.053 1.2E-06 52.4 3.3 26 159-184 26-51 (236)
459 PRK13531 regulatory ATPase Rav 93.8 0.14 3E-06 56.4 6.8 24 162-185 41-64 (498)
460 PF03308 ArgK: ArgK protein; 93.8 0.082 1.8E-06 54.0 4.7 36 149-184 17-53 (266)
461 PRK11124 artP arginine transpo 93.8 0.053 1.1E-06 52.5 3.3 26 159-184 27-52 (242)
462 cd01123 Rad51_DMC1_radA Rad51_ 93.8 0.062 1.3E-06 51.4 3.7 25 159-183 18-42 (235)
463 cd03266 ABC_NatA_sodium_export 93.7 0.054 1.2E-06 51.4 3.3 25 160-184 31-55 (218)
464 cd03257 ABC_NikE_OppD_transpor 93.7 0.053 1.2E-06 51.6 3.2 26 159-184 30-55 (228)
465 PRK10733 hflB ATP-dependent me 93.7 0.07 1.5E-06 60.1 4.6 33 158-190 183-215 (644)
466 cd03268 ABC_BcrA_bacitracin_re 93.7 0.056 1.2E-06 51.1 3.3 26 159-184 25-50 (208)
467 PF00308 Bac_DnaA: Bacterial d 93.7 0.25 5.5E-06 48.2 7.9 23 162-184 36-58 (219)
468 KOG0745 Putative ATP-dependent 93.7 0.063 1.4E-06 58.5 4.0 29 162-190 228-256 (564)
469 cd03229 ABC_Class3 This class 93.7 0.058 1.3E-06 50.1 3.3 25 160-184 26-50 (178)
470 cd00876 Ras Ras family. The R 93.7 0.053 1.2E-06 47.2 2.9 20 163-182 2-21 (160)
471 PF00025 Arf: ADP-ribosylation 93.7 0.078 1.7E-06 49.3 4.1 32 151-182 5-36 (175)
472 PRK11264 putative amino-acid A 93.7 0.056 1.2E-06 52.5 3.3 26 159-184 28-53 (250)
473 cd03218 ABC_YhbG The ABC trans 93.7 0.056 1.2E-06 51.8 3.3 26 159-184 25-50 (232)
474 cd03297 ABC_ModC_molybdenum_tr 93.7 0.057 1.2E-06 51.4 3.2 24 161-184 24-47 (214)
475 PHA02624 large T antigen; Prov 93.7 0.07 1.5E-06 60.1 4.4 30 159-188 430-459 (647)
476 cd00154 Rab Rab family. Rab G 93.7 0.06 1.3E-06 46.2 3.1 21 162-182 2-22 (159)
477 PRK07933 thymidylate kinase; V 93.6 0.059 1.3E-06 52.3 3.4 25 161-185 1-25 (213)
478 PRK10247 putative ABC transpor 93.6 0.059 1.3E-06 51.9 3.3 26 159-184 32-57 (225)
479 PRK13894 conjugal transfer ATP 93.6 0.16 3.4E-06 52.8 6.6 25 160-184 148-172 (319)
480 cd03232 ABC_PDR_domain2 The pl 93.6 0.06 1.3E-06 50.7 3.2 24 159-182 32-55 (192)
481 COG1136 SalX ABC-type antimicr 93.6 0.059 1.3E-06 53.8 3.3 23 160-182 31-53 (226)
482 KOG0727 26S proteasome regulat 93.6 0.079 1.7E-06 54.6 4.3 42 158-199 187-230 (408)
483 PF06745 KaiC: KaiC; InterPro 93.6 0.063 1.4E-06 51.5 3.4 26 158-183 17-42 (226)
484 PRK10463 hydrogenase nickel in 93.6 0.079 1.7E-06 54.6 4.3 27 158-184 102-128 (290)
485 PRK14247 phosphate ABC transpo 93.6 0.059 1.3E-06 52.5 3.3 26 159-184 28-53 (250)
486 PRK14242 phosphate transporter 93.6 0.061 1.3E-06 52.5 3.3 26 159-184 31-56 (253)
487 KOG0742 AAA+-type ATPase [Post 93.6 0.048 1E-06 59.1 2.8 30 161-190 385-414 (630)
488 cd00984 DnaB_C DnaB helicase C 93.5 0.072 1.6E-06 51.2 3.8 27 158-184 11-37 (242)
489 smart00173 RAS Ras subfamily o 93.5 0.065 1.4E-06 47.5 3.2 21 162-182 2-22 (164)
490 cd04160 Arfrp1 Arfrp1 subfamil 93.5 0.065 1.4E-06 47.7 3.2 22 163-184 2-23 (167)
491 PRK10646 ADP-binding protein; 93.5 0.084 1.8E-06 49.8 4.0 30 159-188 27-56 (153)
492 PRK11248 tauB taurine transpor 93.5 0.061 1.3E-06 53.1 3.3 26 159-184 26-51 (255)
493 cd03251 ABCC_MsbA MsbA is an e 93.5 0.063 1.4E-06 51.6 3.3 26 159-184 27-52 (234)
494 PRK14250 phosphate ABC transpo 93.5 0.062 1.3E-06 52.3 3.3 26 159-184 28-53 (241)
495 PF03029 ATP_bind_1: Conserved 93.5 0.045 9.8E-07 54.3 2.3 21 165-185 1-21 (238)
496 PRK10908 cell division protein 93.5 0.064 1.4E-06 51.3 3.3 26 159-184 27-52 (222)
497 TIGR01184 ntrCD nitrate transp 93.5 0.064 1.4E-06 51.9 3.3 25 160-184 11-35 (230)
498 smart00175 RAB Rab subfamily o 93.5 0.07 1.5E-06 47.0 3.3 21 162-182 2-22 (164)
499 cd04137 RheB Rheb (Ras Homolog 93.5 0.071 1.5E-06 48.4 3.4 22 161-182 2-23 (180)
500 PRK13833 conjugal transfer pro 93.5 0.16 3.5E-06 53.0 6.4 24 161-184 145-168 (323)
No 1
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=100.00 E-value=6e-42 Score=345.54 Aligned_cols=283 Identities=23% Similarity=0.362 Sum_probs=240.1
Q ss_pred eEEEEEeccCCCccccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHH
Q 010885 68 VKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISR 147 (498)
Q Consensus 68 vkvkV~l~~~~dh~y~fSRglLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~r 147 (498)
++|.|.-+ +..+|||||||+|+|+.+|+++++||+||.++++.|+++++..+++++|++.|++.|.+.+|.. .+.+
T Consensus 4 ~~i~v~~~---~~~~pfSrgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~-~~~~ 79 (301)
T PRK04220 4 IRIIVKGK---KYEMPFSKGILARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEE-VAEK 79 (301)
T ss_pred eEEEEcCC---CccCCCcHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHh-HHHH
Confidence 45555554 5679999999999999999999999999999999999999999999999999999999986654 6889
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCC------CCCccccc--cccC
Q 010885 148 YRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWAR--NFSS 219 (498)
Q Consensus 148 Y~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pL------ss~~~W~~--~f~s 219 (498)
|++|+++++.++|++|+|+|++||||||+|..||.+||+.+|+++|.+|+.||...+.++ +.+..|.. ..++
T Consensus 80 y~~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~ 159 (301)
T PRK04220 80 YLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPP 159 (301)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCC
Confidence 999999999999999999999999999999999999999998999999999997654332 23455652 1233
Q ss_pred hHH-HHHHHhhcchhHHHHHHHHHHHHhhCCCcEEEEcccCCcccccccccCCCCccccccccCCCCCCCCCCccccccC
Q 010885 220 SEE-LVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESN 298 (498)
Q Consensus 220 ~Ee-lI~~f~~q~~~V~egL~~~IekaL~eG~sVIVEGthL~P~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (498)
+++ .+.+|..||+.+..++.+.+++++.+|.++|+||+|+.|++....
T Consensus 160 ~~~~~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~------------------------------- 208 (301)
T PRK04220 160 PEPPVIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEK------------------------------- 208 (301)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHh-------------------------------
Confidence 444 899999999999999999999999999999999999999986630
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccccccccchhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEE
Q 010885 299 SASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIV 378 (498)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iiiP~v 378 (498)
....|.+|||+
T Consensus 209 ---------------------------------------------------------------------~~~~~~~i~~~ 219 (301)
T PRK04220 209 ---------------------------------------------------------------------YLENPNVFMFV 219 (301)
T ss_pred ---------------------------------------------------------------------hhcCCCEEEEE
Confidence 01234689999
Q ss_pred EEecccchHHHHHHhhhhccccccccccch-HHHHHhHHHHHHHhhhcccCCceEEEecCCCccchHHHHHHHHHHHHHh
Q 010885 379 LKMADFDHKALLEEWILTHTFGDKCLVQNK-DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQVYLF 457 (498)
Q Consensus 379 l~~~~~dh~~lle~w~~~ra~~~~~~~~~~-~~~i~nl~tIQdYLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i~~ 457 (498)
|++++++.| . +.|..|+...+ .+.++ .+.|.++++||||||..+. .+.++-|+++++++|+|.+|.++.+|+..
T Consensus 220 l~i~~ee~h--~-~RF~~R~~~~~-r~~~~y~~~~~~ir~iq~~l~~~a~-~~~ip~I~n~~i~~s~~~~~~~i~~~~~~ 294 (301)
T PRK04220 220 LTLSDEEAH--K-ARFYARARVSR-RPAERYLKNFEIIREINDYIVEKAK-KHGVPVIENISIEETVDKILEIITERLSK 294 (301)
T ss_pred EEECCHHHH--H-HHHHHHHhhhC-CchhhHHHHHHHHHHHHHHHHHHHH-HhCCCeecCccHHHHHHHHHHHHHHHHHH
Confidence 998885554 3 44477988664 44454 4899999999999999875 78888899999999999999999999965
Q ss_pred hh
Q 010885 458 YI 459 (498)
Q Consensus 458 ~~ 459 (498)
..
T Consensus 295 ~~ 296 (301)
T PRK04220 295 II 296 (301)
T ss_pred HH
Confidence 43
No 2
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=327.06 Aligned_cols=272 Identities=25% Similarity=0.394 Sum_probs=229.8
Q ss_pred Ccc-ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhcc
Q 010885 79 DHY-YVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQ 157 (498)
Q Consensus 79 dh~-y~fSRglLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~ 157 (498)
++| -|||||+|+|+|+++|++|+.||+||.+++.+|.+.+...|+.++|++ +.+.|.+.++.+ .+.+|.+|++|+++
T Consensus 9 ~~~~~PFSkGiL~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~~~v~~~eir~-~~~~l~~k~~~e-~a~rY~lwR~ir~~ 86 (299)
T COG2074 9 DKYEMPFSKGILARSLTAAGVDPDLAYSIAIEIQEELKKEGIRLVTKDEIRE-VYQKLLEKGDPE-VAKRYLLWRRIRKM 86 (299)
T ss_pred CcccCCcchhHHHHHHHhcccChhHHHHHHHHHHHHHHhCCCeEeeHHHHHH-HHHHHHHhcCHH-HHHHHHHHHHHhcc
Confidence 566 899999999999999999999999999999999999999999999999 666666656554 69999999999999
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCC------CCCccccc--cccChHHHHHHHhh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWAR--NFSSSEELVTEFVR 229 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pL------ss~~~W~~--~f~s~EelI~~f~~ 229 (498)
+.|.+|||+|+||+||||+|..||.+||+..+++||.+|+.||...+.++ +++.+|.. ........+.+|.+
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d 166 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED 166 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence 99999999999999999999999999999999999999999998776433 34677763 11122238999999
Q ss_pred cchhHHHHHHHHHHHHhhCCCcEEEEcccCCcccccccccCCCCccccccccCCCCCCCCCCccccccCcccccccccCC
Q 010885 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWEN 309 (498)
Q Consensus 230 q~~~V~egL~~~IekaL~eG~sVIVEGthL~P~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (498)
|++.|..|+.+.+++++.+|.++|+||+|+.|++.....+
T Consensus 167 qa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~---------------------------------------- 206 (299)
T COG2074 167 QASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL---------------------------------------- 206 (299)
T ss_pred HhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh----------------------------------------
Confidence 9999999999999999999999999999999999874110
Q ss_pred CCCCCCCCCCCCCcccccccccccchhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecc-cchHH
Q 010885 310 GNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMAD-FDHKA 388 (498)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iiiP~vl~~~~-~dh~~ 388 (498)
+.-.++|||.++| ++|+.
T Consensus 207 -------------------------------------------------------------~~n~~~~~l~i~dee~Hr~ 225 (299)
T COG2074 207 -------------------------------------------------------------GNNVFMFMLYIADEELHRE 225 (299)
T ss_pred -------------------------------------------------------------ccceEEEEEEeCCHHHHHH
Confidence 1136899999998 56663
Q ss_pred HHHHhhhhccccc--cccccchHHHHHhHHHHHHHhhhcccCCceEEEecCCCccchHHHHHHHHHHHHHhh
Q 010885 389 LLEEWILTHTFGD--KCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQVYLFY 458 (498)
Q Consensus 389 lle~w~~~ra~~~--~~~~~~~~~~i~nl~tIQdYLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i~~~ 458 (498)
+| -.|+-.+ +-|..-.-+++.-+|+|||||.-.+. ++.|+-|++-..++|.|.+=+.+.+...++
T Consensus 226 ---RF-~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Ar-e~gVPvI~n~di~etv~~il~~i~~~~~r~ 292 (299)
T COG2074 226 ---RF-YDRIRYTHASRPGGRYLEYFKEIRTIHDYLVERAR-EHGVPVIENDDIDETVDRILEDIRKRTVRG 292 (299)
T ss_pred ---HH-HHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH-hcCCCeeccccHHHHHHHHHHHHHHHHHHH
Confidence 33 2344433 33444447999999999999999986 999999999999999999988888776444
No 3
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=100.00 E-value=3.8e-40 Score=347.91 Aligned_cols=292 Identities=21% Similarity=0.292 Sum_probs=250.5
Q ss_pred eeEEEEEeccCCCccccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHH
Q 010885 67 FVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYIS 146 (498)
Q Consensus 67 fvkvkV~l~~~~dh~y~fSRglLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~ 146 (498)
|++|-|.-+.. +.-.|||||+|.|+|+.+||++++|++|+.++++.|++.+...++++++++.|.+.+.+. ++...+.
T Consensus 164 ~~~~~v~~~~~-~~~~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~-l~~~~a~ 241 (475)
T PRK12337 164 AGELFVEEAEG-APRVPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALLLEE-AGEEVAR 241 (475)
T ss_pred chheeeeeCCC-CCCCCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 88999998842 334999999999999999999999999999999999988888889999999999998873 4445577
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCC------CCCcccccc----
Q 010885 147 RYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWARN---- 216 (498)
Q Consensus 147 rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pL------ss~~~W~~~---- 216 (498)
+|.+++.+...++|.+|+++|+||+||||+|..||.++|+.+++.+|.+|+.|++..+.++ +++.+|...
T Consensus 242 ~y~la~~i~~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~ 321 (475)
T PRK12337 242 RYRLLRSIRRPPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPG 321 (475)
T ss_pred HHHHHHHhhccCCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcc
Confidence 8989999988788999999999999999999999999999988999999999998765433 234556531
Q ss_pred -----ccChHHHHHHHhhcchhHHHHHHHHHHHHhhCCCcEEEEcccCCcccccccccCCCCccccccccCCCCCCCCCC
Q 010885 217 -----FSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNP 291 (498)
Q Consensus 217 -----f~s~EelI~~f~~q~~~V~egL~~~IekaL~eG~sVIVEGthL~P~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 291 (498)
.+..+.++.+|..||..|..++.+.+++++.+|.+|||||+|+.|+++.. .
T Consensus 322 ~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~-~----------------------- 377 (475)
T PRK12337 322 EGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH-P----------------------- 377 (475)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH-H-----------------------
Confidence 11346789999999999999999999999999999999999999998652 0
Q ss_pred ccccccCcccccccccCCCCCCCCCCCCCCCcccccccccccchhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 010885 292 VTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPD 371 (498)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 371 (498)
...+
T Consensus 378 ----------------------------------------------------------------------------~~~~ 381 (475)
T PRK12337 378 ----------------------------------------------------------------------------YQAG 381 (475)
T ss_pred ----------------------------------------------------------------------------HhcC
Confidence 1246
Q ss_pred cEEEEEEEEecccchHHHHHHhhhhccccc-cccccch-HHHHHhHHHHHHHhhhcccCCceEEEecCCCccchHHHHHH
Q 010885 372 PIIIPIVLKMADFDHKALLEEWILTHTFGD-KCLVQNK-DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHG 449 (498)
Q Consensus 372 ~iiiP~vl~~~~~dh~~lle~w~~~ra~~~-~~~~~~~-~~~i~nl~tIQdYLc~~~~q~~~vv~i~~~~~~~tld~lH~ 449 (498)
+.+|||+++++|+++| . +.|.+|+..+ +.++.++ .++|+|+|+||||||..+. .+.|+-|+|+++++|+|.+|.
T Consensus 382 ~~~i~flv~isdeeeH--~-~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQdyLv~~A~-~~~ipvI~n~nid~tv~~~l~ 457 (475)
T PRK12337 382 ALVVPMLVTLPDEALH--R-RRFELRDRETGASRPRERYLRHFEEIRLIQDHLLRLAR-QEGVPVLPGEDLDESIDKALE 457 (475)
T ss_pred CceEEEEEEECCHHHH--H-HHHHHHhhhccCCCchhHHHHhHHHHHHHHHHHHHHHH-HcCCCeecCccHHHHHHHHHH
Confidence 7999999999998877 3 4557899866 3566666 7999999999999999985 789999999999999999999
Q ss_pred HHHHHHHhhhcccch
Q 010885 450 YLLQVYLFYIQCRVK 464 (498)
Q Consensus 450 ~ll~~i~~~~~~~~~ 464 (498)
.+++++..+++-...
T Consensus 458 ~i~~~~~~~~~~~~~ 472 (475)
T PRK12337 458 VVLRRVMAALTPEER 472 (475)
T ss_pred HHHHHHHHhcCHHhh
Confidence 999999998875543
No 4
>PRK12338 hypothetical protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=221.10 Aligned_cols=195 Identities=24% Similarity=0.360 Sum_probs=153.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCC------CCCccccc-----cccC-hHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWAR-----NFSS-SEELVT 225 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pL------ss~~~W~~-----~f~s-~EelI~ 225 (498)
++|.+|+|+|+|||||||+|+.||.++|+.+++.+|.+|+.+++..+.++ +++.+|.. .+.+ .+.++.
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 46899999999999999999999999999998899999999998765533 23455542 1111 456789
Q ss_pred HHhhcchhHHHHHHHHHHHHhhCCCcEEEEcccCCcccccccccCCCCccccccccCCCCCCCCCCccccccCccccccc
Q 010885 226 EFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVS 305 (498)
Q Consensus 226 ~f~~q~~~V~egL~~~IekaL~eG~sVIVEGthL~P~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (498)
+|..||.+|..++.+.+.+++.+|.+|||||+||.|+++....+.
T Consensus 82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~----------------------------------- 126 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFE----------------------------------- 126 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhc-----------------------------------
Confidence 999999999999999999999999999999999999998741100
Q ss_pred ccCCCCCCCCCCCCCCCcccccccccccchhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecccc
Q 010885 306 DWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFD 385 (498)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iiiP~vl~~~~~d 385 (498)
..+ .|||++.+++++
T Consensus 127 ----------------------------------------------------------------~~~-~v~~~vl~~dee 141 (319)
T PRK12338 127 ----------------------------------------------------------------ENA-SIHFFILSADEE 141 (319)
T ss_pred ----------------------------------------------------------------ccC-ceEEEEEECCHH
Confidence 012 356666667665
Q ss_pred hHHHHHHhhhhccccccccccchHHHHHhHHHHHHHhhhcccCCceEEEecCCCccchHHHHHHHHHHHHHh
Q 010885 386 HKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQVYLF 457 (498)
Q Consensus 386 h~~lle~w~~~ra~~~~~~~~~~~~~i~nl~tIQdYLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i~~ 457 (498)
.| ++++ ..|+..+. .+....+.+.++|+||||||..+ ..+-|+.|++.++++|++.++.+|-+..+.
T Consensus 142 ~h--~~Rf-~~R~~~~~-r~~~~l~~f~~Ir~Iq~~l~~~A-~e~~VpvI~N~did~Tv~~ile~I~e~s~~ 208 (319)
T PRK12338 142 VH--KERF-VKRAMEIK-RGGKQLEYFRENRIIHDHLVEQA-REHNVPVIKNDDIDCTVKKMLSYIREVCVT 208 (319)
T ss_pred HH--HHHH-HHhhhccC-CchhhhhChHHHHHHHHHHHHhH-hhCCCceeCCCcHHHHHHHHHHHHHhheEE
Confidence 55 4555 66887554 22234689999999999999995 588899999999999999999998776543
No 5
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.89 E-value=7.3e-23 Score=195.46 Aligned_cols=182 Identities=19% Similarity=0.311 Sum_probs=144.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCC-C---CCCccccc-cccChHHHHHHHhhcchh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAP-L---SSSPVWAR-NFSSSEELVTEFVRECRI 233 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~p-L---ss~~~W~~-~f~s~EelI~~f~~q~~~ 233 (498)
.|++|+|+|+||+||||+|+.|+.++|+.+++.+|.+|+.++...+.. . +.+..|.. .-+..+.++.+|..|+..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999755422 2 12334432 112346789999999999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcccCCcccccccccCCCCccccccccCCCCCCCCCCccccccCcccccccccCCCCCC
Q 010885 234 VRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNS 313 (498)
Q Consensus 234 V~egL~~~IekaL~eG~sVIVEGthL~P~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (498)
|+.++.+.++.++.+|.++|+||+|+.|.+.....
T Consensus 82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~--------------------------------------------- 116 (197)
T PRK12339 82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR--------------------------------------------- 116 (197)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999998753100
Q ss_pred CCCCCCCCCcccccccccccchhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecc-cchHHHHHH
Q 010885 314 PEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMAD-FDHKALLEE 392 (498)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iiiP~vl~~~~-~dh~~lle~ 392 (498)
.+.++.|+|++++ +.|+ +
T Consensus 117 ---------------------------------------------------------~~~v~~i~l~v~d~e~lr----~ 135 (197)
T PRK12339 117 ---------------------------------------------------------TNNIRAFYLYIRDAELHR----S 135 (197)
T ss_pred ---------------------------------------------------------hcCeEEEEEEeCCHHHHH----H
Confidence 0124678888864 4444 6
Q ss_pred hhhhccccc-cccccch-HHHHHhHHHHHHHhhhcccCCceEEEecCCCccchHHHH
Q 010885 393 WILTHTFGD-KCLVQNK-DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWL 447 (498)
Q Consensus 393 w~~~ra~~~-~~~~~~~-~~~i~nl~tIQdYLc~~~~q~~~vv~i~~~~~~~tld~l 447 (498)
.+..|.... ...|.++ .++|+++|+||||||..+. .+.|+-|+++++++|+|.+
T Consensus 136 Rl~~R~~~~~~~~p~~~~~~~~~~ir~i~~~l~~~a~-~~~i~~i~~~~~~~~~~~~ 191 (197)
T PRK12339 136 RLADRINYTHKNSPGKRLAEHLPEYRTIMDYSIADAR-GYNIKVIDTDNYREARNPL 191 (197)
T ss_pred HHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHH-HcCCCeecCccHHHHHHHH
Confidence 678888633 3344444 7899999999999999985 9999999999999999865
No 6
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.91 E-value=4.3e-09 Score=92.28 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=57.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGD 241 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~~~ 241 (498)
+|+++|+|||||||+|+.|++.++..+ +..|.++..+.+.... .+.. ..... ..+...+.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~-i~~D~~~~~~~~~~~~------~~~~----~~~~~-------~~~~~~~~~~ 62 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVV-ISQDEIRRRLAGEDPP------SPSD----YIEAE-------ERAYQILNAA 62 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEE-EEHHHHHHHHCCSSSG------CCCC----CHHHH-------HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEE-EeHHHHHHHHcccccc------cchh----HHHHH-------HHHHHHHHHH
Confidence 689999999999999999999999665 5788888877652211 1110 00111 1233456677
Q ss_pred HHHHhhCCCcEEEEcccCCcccc
Q 010885 242 LKKAMKDGKPIIIEGIHLDPSIY 264 (498)
Q Consensus 242 IekaL~eG~sVIVEGthL~P~l~ 264 (498)
+...+..|.++|||++++.+...
T Consensus 63 ~~~~l~~g~~~vvd~~~~~~~~r 85 (143)
T PF13671_consen 63 IRKALRNGNSVVVDNTNLSREER 85 (143)
T ss_dssp HHHHHHTT-EEEEESS--SHHHH
T ss_pred HHHHHHcCCCceeccCcCCHHHH
Confidence 78889999999999998887554
No 7
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.88 E-value=6e-09 Score=111.87 Aligned_cols=81 Identities=28% Similarity=0.370 Sum_probs=76.5
Q ss_pred ceeEEEEEeccCCCccccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhH
Q 010885 66 DFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYI 145 (498)
Q Consensus 66 dfvkvkV~l~~~~dh~y~fSRglLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a 145 (498)
-||+|.|..+ ++..|||||||+|+|+.+|+++++||.||.++.+.|...++..|+.++|++.+...|.+. |+++.+
T Consensus 79 ~~~~i~V~~~---~~~~PFSkGiLarSL~~aG~~~~~Ay~iA~~Ve~~Lr~~~~~~Is~~eL~~~v~~~l~~~-~g~e~a 154 (475)
T PRK12337 79 AFVDIVVREG---RGRRPFSRGVLARSLEDAGFSPREAYELASAVELRLRQEGVREIGAKELEKRTARELAER-YGEEAR 154 (475)
T ss_pred CcceEEEecC---CCCCCcchhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHHHHHHh-cCHHHH
Confidence 4899999997 789999999999999999999999999999999999999999999999999999999884 777789
Q ss_pred HHHHH
Q 010885 146 SRYRM 150 (498)
Q Consensus 146 ~rY~L 150 (498)
.+|..
T Consensus 155 ~ry~~ 159 (475)
T PRK12337 155 LRYRA 159 (475)
T ss_pred HHHHH
Confidence 99976
No 8
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.87 E-value=3.2e-09 Score=99.55 Aligned_cols=84 Identities=30% Similarity=0.446 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH-HHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LAG 240 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg-L~~ 240 (498)
.|||+|+||+||||++.+||+.+|++++..+|.+++.- + +..|... ..|..+.+. +.+
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~-------l--~~gyDE~------------y~c~i~DEdkv~D 67 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN-------L--YEGYDEE------------YKCHILDEDKVLD 67 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc-------c--hhccccc------------ccCccccHHHHHH
Confidence 68999999999999999999999999999999999841 1 1222221 135555554 777
Q ss_pred HHHHHhhCCCcEE-EEcccCCcccccc
Q 010885 241 DLKKAMKDGKPII-IEGIHLDPSIYLM 266 (498)
Q Consensus 241 ~IekaL~eG~sVI-VEGthL~P~l~~~ 266 (498)
.++..|.+|..|| ++|+.++|+.+-.
T Consensus 68 ~Le~~m~~Gg~IVDyHgCd~Fperwfd 94 (176)
T KOG3347|consen 68 ELEPLMIEGGNIVDYHGCDFFPERWFD 94 (176)
T ss_pred HHHHHHhcCCcEEeecccCccchhhee
Confidence 8888899999999 9999999998764
No 9
>PLN02200 adenylate kinase family protein
Probab=98.87 E-value=4.2e-08 Score=96.29 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=39.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~ 201 (498)
+.|++|+|+|+|||||||+|+.||+++|+.++..+|.+|+.+..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~ 84 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS 84 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc
Confidence 35789999999999999999999999999998888999987653
No 10
>COG0645 Predicted kinase [General function prediction only]
Probab=98.78 E-value=2.8e-08 Score=94.22 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAG 240 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~~ 240 (498)
++++++|.||+||||+|+.|++.+|..+ +.+|.+|+.|++...... . ....++++.....| ..+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~-lrsD~irk~L~g~p~~~r--~---~~g~ys~~~~~~vy--------~~l~~ 67 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIR-LRSDVIRKRLFGVPEETR--G---PAGLYSPAATAAVY--------DELLG 67 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceE-EehHHHHHHhcCCccccc--C---CCCCCcHHHHHHHH--------HHHHH
Confidence 5789999999999999999999999997 589999999987221100 0 01234444444444 56777
Q ss_pred HHHHHhhCCCcEEEEcccCCcccccccccCCC
Q 010885 241 DLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKA 272 (498)
Q Consensus 241 ~IekaL~eG~sVIVEGthL~P~l~~~~~~~a~ 272 (498)
....++..|.+||+|++|.+|.........+.
T Consensus 68 ~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~ 99 (170)
T COG0645 68 RAELLLSSGHSVVLDATFDRPQERALARALAR 99 (170)
T ss_pred HHHHHHhCCCcEEEecccCCHHHHHHHHHHHh
Confidence 78889999999999999999977654443333
No 11
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.76 E-value=3.2e-08 Score=90.98 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+|+|+|+|||||||+|+.||+++|+.++..+|.+|+.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~ 39 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIK 39 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHh
Confidence 589999999999999999999999999888899999876
No 12
>PRK14531 adenylate kinase; Provisional
Probab=98.68 E-value=1.1e-07 Score=88.81 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=37.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~ 201 (498)
+..|+|+|+|||||||+++.||+++|+.++..+|.+|+.+..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~ 43 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAA 43 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhc
Confidence 346999999999999999999999999998888999987653
No 13
>PRK06762 hypothetical protein; Provisional
Probab=98.64 E-value=7.3e-08 Score=87.62 Aligned_cols=78 Identities=26% Similarity=0.365 Sum_probs=51.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe-EEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~-Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+|++|+|+|+|||||||+|+.|+++++... ++..|.++..+......+ ..+ ..+.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~--------~~~----------------~~~~ 56 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGP--------GNL----------------SIDL 56 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCC--------CCc----------------CHHH
Confidence 588999999999999999999999995332 357888887653211100 000 0011
Q ss_pred HHHHHHHHhhCCCcEEEEcccCC
Q 010885 238 LAGDLKKAMKDGKPIIIEGIHLD 260 (498)
Q Consensus 238 L~~~IekaL~eG~sVIVEGthL~ 260 (498)
+...+...+..|..||+|+++..
T Consensus 57 ~~~~~~~~~~~g~~vild~~~~~ 79 (166)
T PRK06762 57 IEQLVRYGLGHCEFVILEGILNS 79 (166)
T ss_pred HHHHHHHHHhCCCEEEEchhhcc
Confidence 22333345678999999999643
No 14
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.61 E-value=1.7e-07 Score=89.01 Aligned_cols=81 Identities=28% Similarity=0.405 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAG 240 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~~ 240 (498)
++|.|.|+|||||||+|+.||+.||+++|.+++.+|++.+... .++ ++ ...|......+...+..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~g-msl-------------~e-f~~~AE~~p~iD~~iD~ 65 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERG-MSL-------------EE-FSRYAEEDPEIDKEIDR 65 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcC-CCH-------------HH-HHHHHhcCchhhHHHHH
Confidence 4799999999999999999999999999999999999766422 111 11 12233333344444555
Q ss_pred HHHHHhhCCCcEEEEcc
Q 010885 241 DLKKAMKDGKPIIIEGI 257 (498)
Q Consensus 241 ~IekaL~eG~sVIVEGt 257 (498)
....... ...||+||-
T Consensus 66 rq~e~a~-~~nvVlegr 81 (179)
T COG1102 66 RQKELAK-EGNVVLEGR 81 (179)
T ss_pred HHHHHHH-cCCeEEhhh
Confidence 4433334 778888883
No 15
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.60 E-value=1.5e-07 Score=93.27 Aligned_cols=90 Identities=27% Similarity=0.319 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+|.+|+++|+|||||||+|+.|++++ +..+ +..|.+++.+..... . .|. .+..... ..+...
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~~~~~-l~~D~~r~~~~~~~~--~----~~~-~~~~~~~---------~~~~~~ 63 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNPKAVN-VNRDDLRQSLFGHGE--W----GEY-KFTKEKE---------DLVTKA 63 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEE-EeccHHHHHhcCCCc--c----ccc-ccChHHH---------HHHHHH
Confidence 36799999999999999999999999 7776 467888876543211 1 110 1110000 112233
Q ss_pred HHHHHHHHhhCCCcEEEEcccCCccccc
Q 010885 238 LAGDLKKAMKDGKPIIIEGIHLDPSIYL 265 (498)
Q Consensus 238 L~~~IekaL~eG~sVIVEGthL~P~l~~ 265 (498)
+...+..++..|..+|+|++++.+....
T Consensus 64 ~~~~~~~~l~~g~~vIid~~~~~~~~~~ 91 (300)
T PHA02530 64 QEAAALAALKSGKSVIISDTNLNPERRR 91 (300)
T ss_pred HHHHHHHHHHcCCeEEEeCCCCCHHHHH
Confidence 4455566778999999999998877654
No 16
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.58 E-value=2.6e-07 Score=95.63 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=75.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH-HhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKL-LVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~-Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G 167 (498)
|...|..+||.+++|.+|..++++. ....++. +.+.+++.+.+.|.+. +.+ .....+...+....+|.+|+++|
T Consensus 72 LE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~--~~~~v~~~l~~~l~~i-l~~--~~~~~~~~~~~~~~~p~Vil~vG 146 (340)
T COG0552 72 LEELLIEADVGVETAEEIIEELRKREGKKKKIK--DEETVKEALREALIEI-LRP--VDKVDLPLEIPKEKKPFVILFVG 146 (340)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHhcccccCC--CHHHHHHHHHHHHHHH-hcc--cccccchhhhccCCCcEEEEEEe
Confidence 6788999999999999999999995 4433332 2455555555555442 111 01112233344456799999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCCeEE-cchhHHHHH
Q 010885 168 TACVGKSTIATQLAQRL---NLPNVL-QTDMVYELL 199 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L---gl~~Vi-~tD~ire~m 199 (498)
.+|+||||....||..| |.+.++ +.|++|...
T Consensus 147 VNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 147 VNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred cCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence 99999999999999988 777654 779999753
No 17
>PRK14532 adenylate kinase; Provisional
Probab=98.57 E-value=3e-07 Score=85.45 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.|+|.|+|||||||+|+.||+++|+.++..+|.+|+.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~ 40 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIA 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHH
Confidence 489999999999999999999999999877799998764
No 18
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.57 E-value=1.2e-07 Score=81.36 Aligned_cols=32 Identities=44% Similarity=0.711 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD 193 (498)
+|+|+|+|||||||+|+.||+++|+.++..+|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 68999999999999999999999999876555
No 19
>PRK14527 adenylate kinase; Provisional
Probab=98.56 E-value=2.7e-07 Score=86.48 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=38.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
++|.+|+|.|+|||||||+|+.|++++|+.++..+|.+++.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~ 46 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVA 46 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHh
Confidence 4688999999999999999999999999999877788888654
No 20
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.56 E-value=3.3e-07 Score=83.95 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~ 43 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVA 43 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHh
Confidence 788999999999999999999999999877788888653
No 21
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.54 E-value=2.9e-07 Score=87.69 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=35.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
|+|.|+|||||||+|+.||+++|+.++..+|.+|+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~ 39 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIK 39 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhc
Confidence 78999999999999999999999999888899998764
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.52 E-value=3.1e-07 Score=87.12 Aligned_cols=81 Identities=25% Similarity=0.481 Sum_probs=55.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHHH-H
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA-G 240 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~-~ 240 (498)
.|+|.|+||+||||+|+.|+++++++++...|.+|..+... . .....+..|..+..+|...+. .
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~--t-------------~lg~~~k~~i~~g~lv~d~i~~~ 66 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER--T-------------ELGEEIKKYIDKGELVPDEIVNG 66 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC--C-------------hHHHHHHHHHHcCCccchHHHHH
Confidence 58999999999999999999999999986667777754321 0 112345566666656655533 4
Q ss_pred HHHHHhhCCC---cEEEEcc
Q 010885 241 DLKKAMKDGK---PIIIEGI 257 (498)
Q Consensus 241 ~IekaL~eG~---sVIVEGt 257 (498)
.+...+.+.. .+|+||.
T Consensus 67 ~v~~rl~~~d~~~~~I~dg~ 86 (178)
T COG0563 67 LVKERLDEADCKAGFILDGF 86 (178)
T ss_pred HHHHHHHhhcccCeEEEeCC
Confidence 4554554432 6999983
No 23
>PLN02674 adenylate kinase
Probab=98.51 E-value=6.8e-07 Score=89.04 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=57.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+.+..|+|.|+|||||+|+|+.||+++|+.++..+|.+|+.+.... ++ -..+..+......|.+.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s--~~-------------g~~i~~~~~~G~lvpd~ 93 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT--PL-------------GIKAKEAMDKGELVSDD 93 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccC--hh-------------hHHHHHHHHcCCccCHH
Confidence 3456789999999999999999999999999988999999865321 11 01344444444444433
Q ss_pred -HHHHHHHHhhC---CCcEEEEcc
Q 010885 238 -LAGDLKKAMKD---GKPIIIEGI 257 (498)
Q Consensus 238 -L~~~IekaL~e---G~sVIVEGt 257 (498)
+...+...+.. +..+|+||.
T Consensus 94 iv~~lv~~~l~~~~~~~g~ilDGf 117 (244)
T PLN02674 94 LVVGIIDEAMKKPSCQKGFILDGF 117 (244)
T ss_pred HHHHHHHHHHhCcCcCCcEEEeCC
Confidence 23334444432 456889983
No 24
>PRK14974 cell division protein FtsY; Provisional
Probab=98.51 E-value=4.6e-07 Score=93.99 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=72.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccc-c-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDV-S-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I-~-q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
|...|..+||.+++|.+|..++++.+.+.++..- + .+.+.+.+.+.|.+. .... ..+.+...+....+|.+|+++
T Consensus 70 l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~--~~~~~~~~~~~~~~~~vi~~~ 146 (336)
T PRK14974 70 LELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEV-LSVG--DLFDLIEEIKSKGKPVVIVFV 146 (336)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHH-hCCC--cchhhhhhhhccCCCeEEEEE
Confidence 7788999999999999999999999987766421 1 223444444444331 1100 012333344445679999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHH
Q 010885 167 GTACVGKSTIATQLAQRL---NLPN-VLQTDMVYE 197 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ire 197 (498)
|++|+||||++..||..+ |... ++.+|.+|.
T Consensus 147 G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 147 GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 999999999999988776 4443 456787664
No 25
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.51 E-value=4.9e-07 Score=88.86 Aligned_cols=43 Identities=30% Similarity=0.489 Sum_probs=39.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
..|+.|+|.|+|||||||+|+.||+++|++++..+|.+|+.+.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~ 46 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIK 46 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhh
Confidence 3577899999999999999999999999999988899998764
No 26
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.48 E-value=5.1e-07 Score=85.45 Aligned_cols=93 Identities=26% Similarity=0.319 Sum_probs=53.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEcchhHHHHHhcCCCCCCCCCcccccc----ccChHHHHHHHhh
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRL--NLPNVLQTDMVYELLRTSTDAPLSSSPVWARN----FSSSEELVTEFVR 229 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~L--gl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~----f~s~EelI~~f~~ 229 (498)
....|.+++++|+|||||||++..+...+ +-..++..|.+|..+ +.|... ....... ...
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----------p~~~~~~~~~~~~~~~~---~~~ 76 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----------PDYDELLKADPDEASEL---TQK 76 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----------TTHHHHHHHHCCCTHHH---HHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----------cchhhhhhhhhhhhHHH---HHH
Confidence 45789999999999999999999999987 333346788887642 112110 0000001 111
Q ss_pred cchhHHHHHHHHHHHHhhCCCcEEEEcccCCccccc
Q 010885 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL 265 (498)
Q Consensus 230 q~~~V~egL~~~IekaL~eG~sVIVEGthL~P~l~~ 265 (498)
.+. ......++.++.+|.++|+||++-.|+.+.
T Consensus 77 ~a~---~~~~~~~~~a~~~~~nii~E~tl~~~~~~~ 109 (199)
T PF06414_consen 77 EAS---RLAEKLIEYAIENRYNIIFEGTLSNPSKLR 109 (199)
T ss_dssp HHH---HHHHHHHHHHHHCT--EEEE--TTSSHHHH
T ss_pred HHH---HHHHHHHHHHHHcCCCEEEecCCCChhHHH
Confidence 111 123445667889999999999999888876
No 27
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.48 E-value=9.9e-07 Score=79.60 Aligned_cols=39 Identities=33% Similarity=0.522 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
++|+|.|++||||||+|+.|++++|++++..+|.+++..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~ 39 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELA 39 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHH
Confidence 479999999999999999999999999875556666643
No 28
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.45 E-value=8.2e-07 Score=84.89 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~ 201 (498)
.|+|.|+|||||||+|+.||+++|+.++..+|.+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~ 41 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKA 41 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhc
Confidence 5899999999999999999999999998888999987653
No 29
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.44 E-value=9.9e-07 Score=81.35 Aligned_cols=38 Identities=34% Similarity=0.537 Sum_probs=34.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
|+|.|+|||||||+|+.||+++|+.++..+|.+++.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~ 39 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIA 39 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHh
Confidence 79999999999999999999999999887888888754
No 30
>PRK14530 adenylate kinase; Provisional
Probab=98.44 E-value=8.4e-07 Score=84.83 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
.|+|.|+|||||||+|+.||+++|+.++..+|.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~ 42 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANK 42 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhc
Confidence 58899999999999999999999999998889999864
No 31
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.44 E-value=9.1e-07 Score=81.87 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHHHhcCCCCCCCCCcccccc--ccChHHHHHHHhhcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARN--FSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V-i~tD~ire~mr~~~~~pLss~~~W~~~--f~s~EelI~~f~~q~~~V~eg 237 (498)
.+|+|+|+|||||||+|+.|++.++..++ +..|.++..+........ ...+... .+.++... ..++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~y~~ 73 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAE--GGIEFDGDGGVSPGPEF-------RLLEGA 73 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccc--cccccCccCCcccchHH-------HHHHHH
Confidence 48999999999999999999999876543 367888776532110000 0000000 00111110 124445
Q ss_pred HHHHHHHHhhCCCcEEEEcccC
Q 010885 238 LAGDLKKAMKDGKPIIIEGIHL 259 (498)
Q Consensus 238 L~~~IekaL~eG~sVIVEGthL 259 (498)
+...+..++..|.+||+|+++.
T Consensus 74 ~~~~~~~~l~~G~~VIvD~~~~ 95 (175)
T cd00227 74 WYEAVAAMARAGANVIADDVFL 95 (175)
T ss_pred HHHHHHHHHhCCCcEEEeeecc
Confidence 5666777889999999999986
No 32
>PRK04182 cytidylate kinase; Provisional
Probab=98.40 E-value=1.7e-06 Score=78.46 Aligned_cols=40 Identities=33% Similarity=0.548 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
++|+|.|.+||||||+|+.||+++|++++..+|.+++...
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~ 40 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAK 40 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHH
Confidence 4799999999999999999999999998755666776543
No 33
>PRK04040 adenylate kinase; Provisional
Probab=98.38 E-value=1.8e-06 Score=82.19 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEcchhHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL--NLPNVLQTDMVYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L--gl~~Vi~tD~ire~mr 200 (498)
.|++|+|+|+|||||||+++.|++++ ++.++..+|.+++...
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~ 44 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAK 44 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHH
Confidence 37799999999999999999999999 8998878888777543
No 34
>PLN02459 probable adenylate kinase
Probab=98.35 E-value=1.9e-06 Score=86.81 Aligned_cols=83 Identities=27% Similarity=0.433 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH-
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG- 237 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg- 237 (498)
+|+.|+|.|+|||||||+|..||+.+|+.++..+|.+|+.+.... ++ ...+..|......|-..
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t--~l-------------g~~i~~~~~~G~lVPdei 92 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSG--PL-------------GAQLKEIVNQGKLVPDEI 92 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccc--hh-------------HHHHHHHHHcCCccCHHH
Confidence 457788899999999999999999999999989999999765321 11 12345555554444333
Q ss_pred HHHHHHHHhhC-----CCcEEEEc
Q 010885 238 LAGDLKKAMKD-----GKPIIIEG 256 (498)
Q Consensus 238 L~~~IekaL~e-----G~sVIVEG 256 (498)
+...+...|.+ ...+|+||
T Consensus 93 v~~ll~~~l~~~~~~~~~g~iLDG 116 (261)
T PLN02459 93 IFSLLSKRLEAGEEEGESGFILDG 116 (261)
T ss_pred HHHHHHHHHhcccccCCceEEEeC
Confidence 23333344432 35688999
No 35
>PRK13808 adenylate kinase; Provisional
Probab=98.32 E-value=1.2e-05 Score=83.64 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.|+|.|+|||||||++..|++.+|+.++..+|.+|+.+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~ 40 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVA 40 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhh
Confidence 488999999999999999999999999888899998654
No 36
>PRK07261 topology modulation protein; Provisional
Probab=98.31 E-value=1e-06 Score=82.14 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ir 196 (498)
.|+|+|+|||||||+|+.|+..+|++.+. .|.++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~-~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLH-LDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEe-cCCEE
Confidence 58999999999999999999999999764 55443
No 37
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.30 E-value=1.7e-06 Score=94.61 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=56.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK 236 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~e 236 (498)
..+|.+|+++|+|||||||+|+.++..+|+.+| +.|.+.. | .
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~v-n~D~lg~---------------~----------------------~ 407 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHV-NADTLGS---------------T----------------------Q 407 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEE-CcHHHHH---------------H----------------------H
Confidence 456889999999999999999999999998875 5665521 0 1
Q ss_pred HHHHHHHHHhhCCCcEEEEcccCCccccc
Q 010885 237 GLAGDLKKAMKDGKPIIIEGIHLDPSIYL 265 (498)
Q Consensus 237 gL~~~IekaL~eG~sVIVEGthL~P~l~~ 265 (498)
.+...++.+|..|.+||||++++.+....
T Consensus 408 ~~~~~a~~~L~~G~sVVIDaTn~~~~~R~ 436 (526)
T TIGR01663 408 NCLTACERALDQGKRCAIDNTNPDAASRA 436 (526)
T ss_pred HHHHHHHHHHhCCCcEEEECCCCCHHHHH
Confidence 13344677899999999999999986554
No 38
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.30 E-value=2.1e-06 Score=77.40 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=51.8
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH-HHHHHH
Q 010885 165 VCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LAGDLK 243 (498)
Q Consensus 165 I~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg-L~~~Ie 243 (498)
|.|+|||||||+|..||+++|+.+|...|.+|+.+.... .. ...+..+......|... +...+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s-------~~--------g~~i~~~l~~g~~vp~~~v~~ll~ 65 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDS-------EL--------GKQIQEYLDNGELVPDELVIELLK 65 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTS-------HH--------HHHHHHHHHTTSS--HHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhh-------HH--------HHHHHHHHHhhccchHHHHHHHHH
Confidence 689999999999999999999999999999999775311 11 12344554444444333 333333
Q ss_pred HHhh---CCCcEEEEcc
Q 010885 244 KAMK---DGKPIIIEGI 257 (498)
Q Consensus 244 kaL~---eG~sVIVEGt 257 (498)
..+. .....|+||.
T Consensus 66 ~~l~~~~~~~g~ildGf 82 (151)
T PF00406_consen 66 ERLEQPPCNRGFILDGF 82 (151)
T ss_dssp HHHHSGGTTTEEEEESB
T ss_pred HHHhhhcccceeeeeec
Confidence 3333 4577899994
No 39
>PRK01184 hypothetical protein; Provisional
Probab=98.30 E-value=4.6e-06 Score=77.23 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
++|+|+|+|||||||+|. +++++|++++..+|.+|+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~ 40 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVK 40 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHH
Confidence 489999999999999987 788999998776799999764
No 40
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.28 E-value=1.5e-06 Score=77.66 Aligned_cols=35 Identities=37% Similarity=0.556 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+|+|+|+|||||||+|+.|++++++.++ ..|.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i-~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFI-DGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEE-eCccccc
Confidence 5899999999999999999999999875 6777765
No 41
>PRK08118 topology modulation protein; Reviewed
Probab=98.25 E-value=2.4e-06 Score=79.62 Aligned_cols=33 Identities=39% Similarity=0.629 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
.|+|+|+|||||||+|+.|++.+|++++ ..|.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~-~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVH-HLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCce-ecchh
Confidence 5899999999999999999999999986 45544
No 42
>PRK06217 hypothetical protein; Validated
Probab=98.24 E-value=2.6e-06 Score=79.58 Aligned_cols=36 Identities=31% Similarity=0.578 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+.|+|.|+|||||||+|+.|++.+|++++ ..|.+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~-~~D~~~~ 37 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHL-DTDDYFW 37 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEE-EcCceee
Confidence 46999999999999999999999999976 5555443
No 43
>PRK02496 adk adenylate kinase; Provisional
Probab=98.24 E-value=6.2e-06 Score=76.53 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+.|+|.|+|||||||+|+.|++++|+.++..+|.+++.+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~ 41 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIK 41 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHh
Confidence 4589999999999999999999999999877788888764
No 44
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.24 E-value=4.8e-06 Score=75.94 Aligned_cols=82 Identities=28% Similarity=0.249 Sum_probs=53.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+|+|+|.|||||||+|+.|+..+ |... ++..|.+++.+.... .|. .++....| ..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~--------~~~-----~~~~~~~~--------~~ 59 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDL--------GFS-----REDREENI--------RR 59 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhcc--------CCC-----cchHHHHH--------HH
Confidence 47999999999999999999998 6553 356788988654311 111 11111111 12
Q ss_pred HHHHHHHHhhCCCcEEEEcccCCcccc
Q 010885 238 LAGDLKKAMKDGKPIIIEGIHLDPSIY 264 (498)
Q Consensus 238 L~~~IekaL~eG~sVIVEGthL~P~l~ 264 (498)
+...+...+.+|..||+|+++..+...
T Consensus 60 ~~~~a~~l~~~G~~VIid~~~~~~~~R 86 (149)
T cd02027 60 IAEVAKLLADAGLIVIAAFISPYREDR 86 (149)
T ss_pred HHHHHHHHHhCCCEEEEccCCCCHHHH
Confidence 333344556889999999998766543
No 45
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.23 E-value=1e-05 Score=75.28 Aligned_cols=82 Identities=28% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~-~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~ 233 (498)
.+|.+|+|+|+|||||||+|+.|+..+ |.. .++..|.+++.+....+ + ..++....+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~------------~-~~~~~~~~~------ 76 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLG------------F-SEEDRKENI------ 76 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccC------------C-CHHHHHHHH------
Confidence 568899999999999999999999887 333 34578888876543110 1 122222222
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcccCC
Q 010885 234 VRKGLAGDLKKAMKDGKPIIIEGIHLD 260 (498)
Q Consensus 234 V~egL~~~IekaL~eG~sVIVEGthL~ 260 (498)
..+...+...+..|.+||+|+++..
T Consensus 77 --~~~~~~~~~~~~~G~~VI~d~~~~~ 101 (184)
T TIGR00455 77 --RRIGEVAKLFVRNGIIVITSFISPY 101 (184)
T ss_pred --HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 2234444556789999999997655
No 46
>PRK13946 shikimate kinase; Provisional
Probab=98.23 E-value=6.9e-06 Score=77.00 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.+..|+++|++||||||+++.||++||++++ .+|.+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i-d~D~~~~~~~ 49 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFL-DADTEIERAA 49 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeE-CcCHHHHHHh
Confidence 4568999999999999999999999999985 6777655443
No 47
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.22 E-value=7.3e-06 Score=87.72 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=71.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCccc-cc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~-I~-q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
+.+.|.++||.+.++.++..++++.+.+..+.. ++ ...+...|++.|.+. ++.. ...+.. ...+|.+|+++
T Consensus 34 i~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~-l~~~-~~~~~~-----~~~~~~vi~lv 106 (429)
T TIGR01425 34 ICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNL-VDPG-VEAFTP-----KKGKQNVIMFV 106 (429)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH-hCCC-Cccccc-----cCCCCeEEEEE
Confidence 678899999999999999999999988776542 22 234555565555541 1110 011111 13468999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCC-eEEcchhHH
Q 010885 167 GTACVGKSTIATQLAQRL---NLP-NVLQTDMVY 196 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L---gl~-~Vi~tD~ir 196 (498)
|++|+||||++..||..+ |.+ .++..|..|
T Consensus 107 G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 107 GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 999999999999999877 655 346788877
No 48
>PRK14528 adenylate kinase; Provisional
Probab=98.22 E-value=6.6e-06 Score=77.61 Aligned_cols=39 Identities=31% Similarity=0.524 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.|+|.|+|||||||+|+.|++.+|++++..+|.+|+.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~ 41 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVK 41 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhh
Confidence 589999999999999999999999999988888888764
No 49
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.22 E-value=7.1e-06 Score=82.54 Aligned_cols=98 Identities=26% Similarity=0.263 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEc
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCG 167 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~-~~r~P~iIlI~G 167 (498)
|...|..+||.+..|.++..++++.+.+.+... .+.+.+.+.+.|.+. +. .. ...+. ....|.+|+++|
T Consensus 10 l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~-~~-----~~--~~~~~~~~~~~~vi~l~G 79 (272)
T TIGR00064 10 LEEILLESDVGYEVVEKIIEALKKELKGKKVKD--AELLKEILKEYLKEI-LK-----ET--DLELIVEENKPNVILFVG 79 (272)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCC--HHHHHHHHHHHHHHH-Hc-----cc--chhhcccCCCCeEEEEEC
Confidence 677899999999999999999999987665543 345566666655542 11 00 01111 234678999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 010885 168 TACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ir 196 (498)
++|+||||++..||..+ |.+. ++..|.+|
T Consensus 80 ~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 99999999999999877 5443 45667654
No 50
>PRK14529 adenylate kinase; Provisional
Probab=98.21 E-value=4.2e-06 Score=82.36 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=53.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH-HHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LAG 240 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg-L~~ 240 (498)
.|+|.|+|||||||+|+.|++++|+.++...|.+|+.+... .++ ...+..|......|... +..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~--t~l-------------g~~i~~~i~~G~lvpdei~~~ 66 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGG--TEL-------------GKKAKEYIDRGDLVPDDITIP 66 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCC--ChH-------------HHHHHHHHhccCcchHHHHHH
Confidence 48899999999999999999999999987889999865321 111 12344555444444333 233
Q ss_pred HHHHHhhC--CCcEEEEc
Q 010885 241 DLKKAMKD--GKPIIIEG 256 (498)
Q Consensus 241 ~IekaL~e--G~sVIVEG 256 (498)
.+...|.+ ....|+||
T Consensus 67 lv~~~l~~~~~~g~iLDG 84 (223)
T PRK14529 67 MILETLKQDGKNGWLLDG 84 (223)
T ss_pred HHHHHHhccCCCcEEEeC
Confidence 34444432 46689999
No 51
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.20 E-value=5.6e-06 Score=75.12 Aligned_cols=80 Identities=26% Similarity=0.299 Sum_probs=48.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH--HhcC-CCCCCCCCccccccccChHHHHHHHhhcchhHHHHHH
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL--LRTS-TDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA 239 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~--mr~~-~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~ 239 (498)
|+|+|++||||||+|+.|+..+|..++ .+|.+... ++.. .+.+.. .+. ...| ...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v-~~D~~~~~~~~~~~~~~~~~~-----------~~~-~~~~-------~~~~~ 60 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI-EGDDLHPAANIEKMSAGIPLN-----------DDD-RWPW-------LQNLN 60 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE-eCccccChHHHHHHHcCCCCC-----------hhh-HHHH-------HHHHH
Confidence 578999999999999999999998875 56665321 1110 011110 011 1111 12344
Q ss_pred HHHHHHhhCCCcEEEEcccCCcc
Q 010885 240 GDLKKAMKDGKPIIIEGIHLDPS 262 (498)
Q Consensus 240 ~~IekaL~eG~sVIVEGthL~P~ 262 (498)
..+...+..|..+|++.+++++.
T Consensus 61 ~~~~~~l~~~~~~Vi~~t~~~~~ 83 (163)
T TIGR01313 61 DASTAAAAKNKVGIITCSALKRH 83 (163)
T ss_pred HHHHHHHhcCCCEEEEecccHHH
Confidence 45556678888888888876554
No 52
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.19 E-value=6.6e-06 Score=72.15 Aligned_cols=31 Identities=45% Similarity=0.603 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD 193 (498)
+|+|+|+|||||||+|+.||+++|++++. .|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~-~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLD-TG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceec-cc
Confidence 58999999999999999999999999864 44
No 53
>PRK10867 signal recognition particle protein; Provisional
Probab=98.18 E-value=4.6e-06 Score=89.31 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=70.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCccc-ccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~-I~q-~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
|.+.|.++||.+.++.++..+++..+.+.++.. ++. +.+...+.+.|.+. ++.. ...+.+ ....|.+|+++
T Consensus 34 i~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~-l~~~-~~~~~~-----~~~~p~vI~~v 106 (433)
T PRK10867 34 VRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEI-LGGE-NSELNL-----AAKPPTVIMMV 106 (433)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHH-hCCC-cceeee-----cCCCCEEEEEE
Confidence 778899999999999999999999988776542 332 33555555444331 1110 011211 13468999999
Q ss_pred cCCCCcHHHHHHHHHHhc----CCC-eEEcchhHHH
Q 010885 167 GTACVGKSTIATQLAQRL----NLP-NVLQTDMVYE 197 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L----gl~-~Vi~tD~ire 197 (498)
|++|+||||++..||..+ |.+ .++..|..|-
T Consensus 107 G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 107 GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 999999999999998765 443 3567887665
No 54
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.18 E-value=6.6e-06 Score=80.35 Aligned_cols=77 Identities=34% Similarity=0.557 Sum_probs=51.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+|+|+|+|||||||+|+.|++.+ |+.. ++.+|.+++.+. .|... .+ .+ +.+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~-----------~~~~~---~e----~~------~~~~ 56 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP-----------VWKEK---YE----EF------IRDS 56 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH-----------HhhHH---hH----HH------HHHH
Confidence 48999999999999999999988 4543 346688877531 12211 01 11 1222
Q ss_pred HHHHHHHHhhCCCcEEEEcccCCcc
Q 010885 238 LAGDLKKAMKDGKPIIIEGIHLDPS 262 (498)
Q Consensus 238 L~~~IekaL~eG~sVIVEGthL~P~ 262 (498)
....+..++..|..||+||.+...+
T Consensus 57 ~~~~i~~~l~~~~~VI~D~~~~~~~ 81 (249)
T TIGR03574 57 TLYLIKTALKNKYSVIVDDTNYYNS 81 (249)
T ss_pred HHHHHHHHHhCCCeEEEeccchHHH
Confidence 3445677888999999999875544
No 55
>PRK14526 adenylate kinase; Provisional
Probab=98.16 E-value=8.4e-06 Score=79.18 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.|+|.|+|||||||+++.||..+|+.++..+|.+|+.+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~ 40 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENIL 40 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcc
Confidence 478999999999999999999999999888899998654
No 56
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.15 E-value=3.2e-06 Score=76.01 Aligned_cols=40 Identities=35% Similarity=0.352 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
..|.+|+|+|+|||||||+|..||+++|+.++ ..|.+.+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~-d~d~~~~~ 41 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI-DTDHLIEA 41 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE-EChHHHHH
Confidence 35679999999999999999999999999986 46655544
No 57
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.13 E-value=1.4e-05 Score=82.32 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G 167 (498)
=|...|..+||.++.|.+|..++++.+.+.... +.+.+...+.+.|.+. +... ...+.+ ..+.|.+|+++|
T Consensus 51 ~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~-l~~~-~~~~~~-----~~~~~~vi~lvG 121 (318)
T PRK10416 51 ELEELLIEADVGVETTEEIIEELRERVKRKNLK--DPEELKELLKEELAEI-LEPV-EKPLNI-----EEKKPFVILVVG 121 (318)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHH-hCcC-Cccccc-----cCCCCeEEEEEC
Confidence 367889999999999999999999988765432 3345666666555442 1100 001111 234688999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 010885 168 TACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ir 196 (498)
++|+||||++..||..+ |... ++..|..|
T Consensus 122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 99999999999999887 4333 34667755
No 58
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=3.9e-05 Score=81.25 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=65.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT 168 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~ 168 (498)
|.+.|.++|+.+..+.+|..+++..+...... ..+.+.+.+.+.+.+. +.....+.....|.+|+++|+
T Consensus 114 l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~--~~~~v~~~l~~~l~~~---------i~~~~~~~~~~~~~vi~lvGp 182 (388)
T PRK12723 114 IEDILRENDFSESYIKDINEFIKKEFSLSDLD--DYDKVRDSVIIYIAKT---------IKCSGSIIDNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcC--CHHHHHHHHHHHHHHH---------hhccCccccCCCCeEEEEECC
Confidence 66889999999999999999998876543322 2344555554444331 111001111245889999999
Q ss_pred CCCcHHHHHHHHHHhcC-------CC-eEEcchhHHH
Q 010885 169 ACVGKSTIATQLAQRLN-------LP-NVLQTDMVYE 197 (498)
Q Consensus 169 pGSGKSTlA~~LA~~Lg-------l~-~Vi~tD~ire 197 (498)
+|+||||++..||.++. .. .++..|..|-
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 99999999999998763 22 2457787654
No 59
>PRK03839 putative kinase; Provisional
Probab=98.12 E-value=2.7e-06 Score=78.62 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
.|+|.|+|||||||+|+.||+++|++++..+|.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~ 37 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALK 37 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhh
Confidence 689999999999999999999999999766666654
No 60
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.11 E-value=8.2e-06 Score=75.21 Aligned_cols=43 Identities=40% Similarity=0.459 Sum_probs=34.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC----CeEEcchhHHHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNL----PNVLQTDMVYELL 199 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl----~~Vi~tD~ire~m 199 (498)
...|.+|+|+|+|||||||+|+.|+.+++- ..++.+|.+++.+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~ 50 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL 50 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc
Confidence 356889999999999999999999999851 2345678888754
No 61
>PRK13948 shikimate kinase; Provisional
Probab=98.10 E-value=1.8e-05 Score=75.47 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=36.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.+.|..|++.|++||||||+++.||++||+++| .+|.+.+.+.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i-D~D~~ie~~~ 49 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFI-DTDRYIERVT 49 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-ECCHHHHHHH
Confidence 456789999999999999999999999999986 5776655543
No 62
>PRK00625 shikimate kinase; Provisional
Probab=98.10 E-value=1.6e-05 Score=75.06 Aligned_cols=38 Identities=32% Similarity=0.539 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
.|+|+|+|||||||+++.||+++|++++..++.+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~ 39 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence 58999999999999999999999999976656666654
No 63
>PRK08233 hypothetical protein; Provisional
Probab=98.09 E-value=5.6e-06 Score=75.46 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ir 196 (498)
++.+|.|.|+|||||||+|..|+..++...++..|..+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~ 39 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYD 39 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEE
Confidence 36799999999999999999999999755556666654
No 64
>PRK08356 hypothetical protein; Provisional
Probab=98.07 E-value=1.3e-05 Score=75.69 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.++|+|+|+|||||||+|..|+ ++|+.++..+|.+++.++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~ 44 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLT 44 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCccccccc
Confidence 4689999999999999999996 589998888887766544
No 65
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.05 E-value=9e-06 Score=86.91 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=71.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc-cccH-HH----HHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SD----LEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLV 162 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~-~I~q-~e----Le~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~i 162 (498)
+.+.|.++||.+.+.-....++++...+..+. .++. +. +.+.+.++|... - ....+ ..+.|.+
T Consensus 34 ir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~~-~-----~~~~l-----~~~~P~v 102 (451)
T COG0541 34 IRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGGE-N-----SELNL-----AKKPPTV 102 (451)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCCC-C-----ccccc-----CCCCCeE
Confidence 57899999999999999999999999998875 2222 22 333344444320 0 01111 1467999
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHH
Q 010885 163 ILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYE 197 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ire 197 (498)
|+++|..||||||.+..||..| |.+. +++.|++|-
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 9999999999999999999988 5443 458898875
No 66
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=9e-06 Score=77.22 Aligned_cols=85 Identities=28% Similarity=0.422 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH----HHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV----YELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIV 234 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i----re~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V 234 (498)
-+.+|++.|++||||||++..|+++||++++..+|.. ++.|.. +.|+.+.+.|. +
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~--GipLnD~DR~p-------------------W 69 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQ--GIPLNDDDRWP-------------------W 69 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhc--CCCCCcccccH-------------------H
Confidence 4568999999999999999999999999997666543 344442 45676554441 1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcccCCcccc
Q 010885 235 RKGLAGDLKKAMKDGKPIIIEGIHLDPSIY 264 (498)
Q Consensus 235 ~egL~~~IekaL~eG~sVIVEGthL~P~l~ 264 (498)
...+...+.+.+..|+-+|+-+.-|...+.
T Consensus 70 L~~i~~~~~~~l~~~q~vVlACSaLKk~YR 99 (191)
T KOG3354|consen 70 LKKIAVELRKALASGQGVVLACSALKKKYR 99 (191)
T ss_pred HHHHHHHHHHHhhcCCeEEEEhHHHHHHHH
Confidence 245666677777899999999988776554
No 67
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.04 E-value=2.3e-05 Score=84.04 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=69.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
+.+.|.++||++.++.++..++++.+.+..++ .++ ++.+...|.+-|.+. ++.. .... .....|.+|+++
T Consensus 30 i~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-l~~~-~~~~------~~~~~p~vI~lv 101 (437)
T PRK00771 30 IQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKL-LGEE-TEPL------VLPLKPQTIMLV 101 (437)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHH-hCCC-cccc------ccCCCCeEEEEE
Confidence 67889999999999999999999998876653 222 244455555544431 1110 0000 012468999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHH
Q 010885 167 GTACVGKSTIATQLAQRL---NLPN-VLQTDMVYE 197 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ire 197 (498)
|++|+||||++..||..+ |... ++..|.+|.
T Consensus 102 G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 102 GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 999999999999999877 4443 356676543
No 68
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.03 E-value=4.7e-05 Score=84.09 Aligned_cols=80 Identities=25% Similarity=0.258 Sum_probs=54.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC-----CeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcch
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNL-----PNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECR 232 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl-----~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~ 232 (498)
+.|.+|+|+|+|||||||+|+.|+.+|+. ..++.+|.+|+.|.+.. . | +.++....+
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~--------~----f-~~~er~~~~----- 451 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSEL--------G----F-SKEDRDLNI----- 451 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCC--------C----C-CHHHHHHHH-----
Confidence 46889999999999999999999999986 24568899987664210 1 1 112211111
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEccc
Q 010885 233 IVRKGLAGDLKKAMKDGKPIIIEGIH 258 (498)
Q Consensus 233 ~V~egL~~~IekaL~eG~sVIVEGth 258 (498)
..+.......+..|..+|++.++
T Consensus 452 ---~~l~~~a~~v~~~Gg~vI~~~~~ 474 (568)
T PRK05537 452 ---LRIGFVASEITKNGGIAICAPIA 474 (568)
T ss_pred ---HHHHHHHHHHHhCCCEEEEEeCC
Confidence 22333344567889999999985
No 69
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=1.8e-05 Score=76.51 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=61.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK 236 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~e 236 (498)
...|.||++.|.|||||-|.+..+++.+|+.|+.++|.+|+...... .. .-.++..+.....+|-.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~g------se--------~g~~I~~~i~~G~iVP~ 70 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAG------SE--------RGALIKEIIKNGDLVPV 70 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHcccc------Ch--------HHHHHHHHHHcCCcCcH
Confidence 35688999999999999999999999999999999999998754311 01 12467777766655544
Q ss_pred H-HHHHHHHHhhCCCc---EEEEc
Q 010885 237 G-LAGDLKKAMKDGKP---IIIEG 256 (498)
Q Consensus 237 g-L~~~IekaL~eG~s---VIVEG 256 (498)
. +...++.+|.+-.. .+|||
T Consensus 71 ei~~~LL~~am~~~~~~~~fLIDG 94 (195)
T KOG3079|consen 71 EITLSLLEEAMRSSGDSNGFLIDG 94 (195)
T ss_pred HHHHHHHHHHHHhcCCCCeEEecC
Confidence 4 34445555543222 88999
No 70
>PRK13947 shikimate kinase; Provisional
Probab=98.02 E-value=2.6e-05 Score=71.06 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
.|+|.|+|||||||+|+.||++||++++. +|.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id-~d~~~~~ 38 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFID-TDKEIEK 38 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE-Cchhhhh
Confidence 48999999999999999999999999865 5555443
No 71
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.02 E-value=1.9e-05 Score=84.54 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=70.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
|.+.|.++||.+.++.++..++++.+.+..+. .++ .+.+...+.+.|.+. .+.. ...+.+ ...+|.+|+++
T Consensus 33 i~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~-l~~~-~~~~~~-----~~~~p~vi~~v 105 (428)
T TIGR00959 33 IRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAI-LGGE-NASLNL-----AKKPPTVILMV 105 (428)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHH-hCCC-Cccccc-----CCCCCEEEEEE
Confidence 77899999999999999999999998876643 333 244555555554441 1110 001111 23468999999
Q ss_pred cCCCCcHHHHHHHHHHhc----CCC-eEEcchhHHH
Q 010885 167 GTACVGKSTIATQLAQRL----NLP-NVLQTDMVYE 197 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L----gl~-~Vi~tD~ire 197 (498)
|++|+||||++..||..+ |.+ .++..|..|-
T Consensus 106 G~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 106 GLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 999999999999998774 443 3467787664
No 72
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=2.2e-05 Score=84.15 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=69.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT 168 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~ 168 (498)
|...|..+||.+..|.+|..++...+...... ..+.+.+.+.+.|.+. .... . .++.. ....++.+|+++|+
T Consensus 160 L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~--~~~~~~~~l~~~L~~~-l~~~---~-~~~~~-~g~~~~~vi~lvGp 231 (432)
T PRK12724 160 LGERLVREGMSQSYVEEMASKLEERLSPVDQG--RNHNVTERAVTYLEER-VSVD---S-DLFSG-TGKNQRKVVFFVGP 231 (432)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhcccccc--chHHHHHHHHHHHHHh-cccc---h-hhhhh-cccCCCeEEEEECC
Confidence 56899999999999999999999887654333 2345677777777652 1110 0 11110 11134679999999
Q ss_pred CCCcHHHHHHHHHHhc----CCC-eEEcchhHHH
Q 010885 169 ACVGKSTIATQLAQRL----NLP-NVLQTDMVYE 197 (498)
Q Consensus 169 pGSGKSTlA~~LA~~L----gl~-~Vi~tD~ire 197 (498)
+||||||++..||..+ |.. .++..|..|.
T Consensus 232 tGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 232 TGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 9999999999999755 332 3456787664
No 73
>COG4639 Predicted kinase [General function prediction only]
Probab=97.97 E-value=1.9e-05 Score=74.79 Aligned_cols=89 Identities=26% Similarity=0.201 Sum_probs=60.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA 239 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~ 239 (498)
+.+++++|+|||||||+|+.. -+... +++-|.+|..+....+.+.+ ... ...+.+-+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~-~lsld~~r~~lg~~~~~e~s-qk~------------------~~~~~~~l~ 59 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNY-VLSLDDLRLLLGVSASKENS-QKN------------------DELVWDILY 59 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcc-eecHHHHHHHhhhchhhhhc-ccc------------------HHHHHHHHH
Confidence 568999999999999999864 23444 46778888865311111110 001 112456677
Q ss_pred HHHHHHhhCCCcEEEEcccCCcccccccccC
Q 010885 240 GDLKKAMKDGKPIIIEGIHLDPSIYLMDDDS 270 (498)
Q Consensus 240 ~~IekaL~eG~sVIVEGthL~P~l~~~~~~~ 270 (498)
..++..|..|+..|+|+++++|+....-.++
T Consensus 60 ~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~L 90 (168)
T COG4639 60 KQLEQRLRRGKFTIIDATNLRREDRRKLIDL 90 (168)
T ss_pred HHHHHHHHcCCeEEEEcccCCHHHHHHHHHH
Confidence 8888899999999999999999877654433
No 74
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=4.8e-05 Score=82.29 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=72.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCccccc--HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCC
Q 010885 92 MLTVTKIPNHVAIKIALELKKLLVDNSLLDVS--QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTA 169 (498)
Q Consensus 92 ~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~--q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~p 169 (498)
-|+.--|+++.|.+++..+...|.+..+...+ ...+++++.+.|.+---...-..-.+.+...++.++|.+|.|+|.+
T Consensus 308 hLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVN 387 (587)
T KOG0781|consen 308 HLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVN 387 (587)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeec
Confidence 35555789999999999999999999887555 3444444444443311110011222334455667799999999999
Q ss_pred CCcHHHHHHHHHHhc---CCCeEE-cchhHHH
Q 010885 170 CVGKSTIATQLAQRL---NLPNVL-QTDMVYE 197 (498)
Q Consensus 170 GSGKSTlA~~LA~~L---gl~~Vi-~tD~ire 197 (498)
|+||||--..+|..| +++.++ +-|++|.
T Consensus 388 GVGKSTNLAKIayWLlqNkfrVLIAACDTFRs 419 (587)
T KOG0781|consen 388 GVGKSTNLAKIAYWLLQNKFRVLIAACDTFRS 419 (587)
T ss_pred CccccchHHHHHHHHHhCCceEEEEeccchhh
Confidence 999999999999988 566554 4588885
No 75
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.94 E-value=2.7e-05 Score=73.05 Aligned_cols=85 Identities=26% Similarity=0.266 Sum_probs=51.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIV 234 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V 234 (498)
+|.+|+|+|.|||||||+|+.|.++| |... ++..|.+|+.+.. .+ . | +.++-.+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~----dl----~----f-s~~dR~e~~------- 60 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA----DL----G----F-SKEDREENI------- 60 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT----T----------S-SHHHHHHHH-------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC----CC----C----C-CHHHHHHHH-------
Confidence 47899999999999999999999998 5543 4577888875432 11 0 1 111211111
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcccCCcccc
Q 010885 235 RKGLAGDLKKAMKDGKPIIIEGIHLDPSIY 264 (498)
Q Consensus 235 ~egL~~~IekaL~eG~sVIVEGthL~P~l~ 264 (498)
..+...+.....+|..||+..+-..++..
T Consensus 61 -rr~~~~A~ll~~~G~ivIva~isp~~~~R 89 (156)
T PF01583_consen 61 -RRIAEVAKLLADQGIIVIVAFISPYREDR 89 (156)
T ss_dssp -HHHHHHHHHHHHTTSEEEEE----SHHHH
T ss_pred -HHHHHHHHHHHhCCCeEEEeeccCchHHH
Confidence 23455555566889999988777665544
No 76
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.93 E-value=4.5e-05 Score=72.61 Aligned_cols=95 Identities=22% Similarity=0.359 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA 239 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V-i~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~ 239 (498)
.+|++-|+|.|||||+|+.|...+.-+++ ++-|.+++.|......+. ..-.|....+...... ..++.+..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~-~g~~~~~~~~~~~~~~-------~~~~~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPG-DGLEPAGDRPDGGPLF-------RRLYAAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTST-TSEEEETTSEEE-HHH-------HHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCC-ccccccccCCchhHHH-------HHHHHHHH
Confidence 48999999999999999999999987754 577999987653211100 0111221111011111 12334455
Q ss_pred HHHHHHhhCCCcEEEEcccCCccc
Q 010885 240 GDLKKAMKDGKPIIIEGIHLDPSI 263 (498)
Q Consensus 240 ~~IekaL~eG~sVIVEGthL~P~l 263 (498)
..+....+.|..||+|.+++.|..
T Consensus 74 ~~iaa~a~aG~~VIvD~v~~~~~~ 97 (174)
T PF07931_consen 74 AAIAAMARAGNNVIVDDVFLGPRW 97 (174)
T ss_dssp HHHHHHHHTT-EEEEEE--TTTHH
T ss_pred HHHHHHHhCCCCEEEecCccCcHH
Confidence 666667799999999999988864
No 77
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.92 E-value=6.2e-05 Score=66.79 Aligned_cols=35 Identities=37% Similarity=0.520 Sum_probs=29.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
|+|+|+|||||||+|+.||+.+|+.++ ..|.+.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~-~~d~~~~~ 36 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV-DLDELIEQ 36 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE-EchHHHHH
Confidence 789999999999999999999999986 45555443
No 78
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.89 E-value=7.4e-05 Score=72.87 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
+++|.|.|++||||||+++.|++++|+.++..++..|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 568999999999999999999999999987655555543
No 79
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.88 E-value=1.3e-05 Score=76.82 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
++|+|+|+||+||||++..|+ .+|+..+...|.+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~ 37 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN 37 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence 479999999999999999999 9999998888888773
No 80
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.87 E-value=7.5e-06 Score=78.07 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
+.|+++|++|+||||+++.||+.||++++..+..+.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~ 40 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR 40 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH
Confidence 46899999999999999999999999997544445544
No 81
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.86 E-value=0.00011 Score=67.68 Aligned_cols=42 Identities=36% Similarity=0.491 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~-~Vi~tD~ire~mr 200 (498)
.+.+|+|+|+|||||||+|+.|+..+ |.. .++.+|.+++.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~ 48 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS 48 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh
Confidence 46699999999999999999999988 322 2357788887654
No 82
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.85 E-value=5.4e-05 Score=64.43 Aligned_cols=22 Identities=50% Similarity=0.681 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 010885 163 ILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~L 184 (498)
|+|+|+|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 83
>PRK13949 shikimate kinase; Provisional
Probab=97.85 E-value=8.1e-05 Score=69.54 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
.|+|.|+|||||||+++.||+.+|++++ .+|.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~i-d~D~~i~ 37 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFI-DLDFFIE 37 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCee-cccHHHH
Confidence 5899999999999999999999999986 4555433
No 84
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.84 E-value=4.7e-05 Score=73.60 Aligned_cols=44 Identities=34% Similarity=0.359 Sum_probs=37.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHh
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLR 200 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~-~Vi~tD~ire~mr 200 (498)
..+|.+|+++|+|||||||+|.+|.++| |.. +++-+|.+|+.+.
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~ 67 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN 67 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc
Confidence 4578999999999999999999999988 554 4668899999764
No 85
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.84 E-value=4.3e-05 Score=84.84 Aligned_cols=85 Identities=22% Similarity=0.195 Sum_probs=57.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg---l~-~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~ 233 (498)
.+|.+|+++|.|||||||+|+.|+.+|+ .. .++..|.+|+.+... . .++.++....|
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~--~-----------~~~~~~r~~~~------ 518 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRD--L-----------GFSDADRVENI------ 518 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCC--C-----------CCCHHHHHHHH------
Confidence 3689999999999999999999999973 22 346789999864310 0 11233333333
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcccCCccc
Q 010885 234 VRKGLAGDLKKAMKDGKPIIIEGIHLDPSI 263 (498)
Q Consensus 234 V~egL~~~IekaL~eG~sVIVEGthL~P~l 263 (498)
..+...+...+..|..||++++++....
T Consensus 519 --~~l~~~a~~~~~~G~~Vivda~~~~~~~ 546 (632)
T PRK05506 519 --RRVAEVARLMADAGLIVLVSFISPFREE 546 (632)
T ss_pred --HHHHHHHHHHHhCCCEEEEECCCCCHHH
Confidence 2344455556789999999987654433
No 86
>PLN02748 tRNA dimethylallyltransferase
Probab=97.80 E-value=2.8e-05 Score=84.18 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~--ire~mr 200 (498)
+++.+|+|+|++|||||++|..||.+++... ++.|. +++.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~ei-i~~DsmQVYrgLd 63 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEI-INADSMQVYSGLD 63 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeE-EcCchheeeCCcc
Confidence 4567999999999999999999999999885 57785 555554
No 87
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.80 E-value=0.00013 Score=66.80 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.|+|+|++||||||+|+.||+++|++++ ..|.+.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~-d~D~~~~~~~ 41 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFV-DTDQWLQSTS 41 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE-EccHHHHHHh
Confidence 5788999999999999999999999976 5777666543
No 88
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=6.8e-05 Score=79.58 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=76.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCc------ccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSL------LDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLV 162 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v------~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~i 162 (498)
+.+.|.++||.+....++...+++.+...+. ..+.+..+.+.+++++.. +-. .|.. ..++|.+
T Consensus 35 I~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp-~~~-----~~~~-----~K~kpsV 103 (483)
T KOG0780|consen 35 ICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDP-GKS-----ALQP-----KKGKPSV 103 (483)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhCC-CCc-----cccc-----ccCCCcE
Confidence 6788999999999999999999988764443 356666777777777644 211 1222 3467999
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHh
Q 010885 163 ILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLR 200 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ire~mr 200 (498)
|+++|..|+||||.+..||.+| |++. +++.|++|....
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAf 145 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAF 145 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchH
Confidence 9999999999999999999988 6654 458899987543
No 89
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.71 E-value=9.9e-05 Score=75.89 Aligned_cols=41 Identities=37% Similarity=0.573 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~--ire~mr 200 (498)
+|.+|+|+||+||||||+|..||++++... ++.|. +++.|.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~i-is~Ds~Qvy~~l~ 45 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEI-ISADSMQVYRGMD 45 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcE-Eeccccceeeccc
Confidence 567999999999999999999999999885 56776 455544
No 90
>PRK06547 hypothetical protein; Provisional
Probab=97.71 E-value=4.6e-05 Score=71.80 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=33.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ir 196 (498)
...|.+|+|.|++||||||+|+.|++.+++..+ +.|.++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~-~~d~~~ 50 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLV-HLDDLY 50 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCee-ccccee
Confidence 356889999999999999999999999999875 455544
No 91
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.69 E-value=3.3e-05 Score=72.37 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.+|+|.|+|||||||+++.|+..++...++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 478999999999999999999888765443
No 92
>PRK06696 uridine kinase; Validated
Probab=97.69 E-value=5e-05 Score=73.30 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=32.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVY 196 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi-~tD~ir 196 (498)
...|.+|.|.|+|||||||+|+.|+..| |.+.+. +.|.++
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4578999999999999999999999999 666543 455543
No 93
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00024 Score=76.16 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=72.4
Q ss_pred ccccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCC
Q 010885 80 HYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRV 159 (498)
Q Consensus 80 h~y~fSRglLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~ 159 (498)
..+|+--.-+.+.|...||.+..+.++..++...+...+ ..+..++...+.+.+... +. .. .. ....
T Consensus 174 ~~~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~-l~--------~~-~~-~~~~ 240 (436)
T PRK11889 174 ESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT--MITEEEVIEYILEDMRSH-FN--------TE-NV-FEKE 240 (436)
T ss_pred cccchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccc--cCCHHHHHHHHHHHHHHH-hc--------cc-cc-cccC
Confidence 456666667889999999999999999998886544322 334456666666665442 11 00 00 1235
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ir 196 (498)
|.+|+|+|++|+||||++..||..+ |... ++.+|..|
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 7899999999999999999999877 3332 45778766
No 94
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.66 E-value=0.00028 Score=65.96 Aligned_cols=39 Identities=38% Similarity=0.409 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
+..|+|.|++|+||||+++.|+..+|++++ .+|...+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~v-d~D~~i~~~ 42 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY-DSDQEIEKR 42 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEE-ECCchHHHH
Confidence 457999999999999999999999999986 566544433
No 95
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.66 E-value=0.00016 Score=72.95 Aligned_cols=93 Identities=20% Similarity=0.154 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G 167 (498)
-|.+.|...|++.+.+.+|..+++.. ...+.+.+.+.+.|.+. +.. . .........+.+|+|+|
T Consensus 138 ~l~~~L~~~gv~~~la~~L~~~l~~~--------~~~~~~~~~~~~~l~~~-l~~------~-~~~~~~~~~~~vi~~vG 201 (282)
T TIGR03499 138 KLLERLLRAGVSPELARELLEKLPER--------ADAEDAWRWLREALEKM-LPV------K-PEEDEILEQGGVIALVG 201 (282)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHhhcc--------CCHHHHHHHHHHHHHHH-hcc------C-CccccccCCCeEEEEEC
Confidence 45577888888888888888877642 12233444455544431 100 0 00001123577999999
Q ss_pred CCCCcHHHHHHHHHHhc----C-CC-eEEcchhHH
Q 010885 168 TACVGKSTIATQLAQRL----N-LP-NVLQTDMVY 196 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L----g-l~-~Vi~tD~ir 196 (498)
++|+||||++..||..+ | .. .++..|..|
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 99999999999999876 3 33 245667654
No 96
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.62 E-value=0.00028 Score=66.08 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+|.|+|.+||||||+++.|++..|++++.+++..++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~ 39 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVE 39 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHh
Confidence 488999999999999999998877998766556666554
No 97
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.62 E-value=0.00037 Score=66.06 Aligned_cols=44 Identities=30% Similarity=0.328 Sum_probs=34.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHh
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLR 200 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~-~Vi~tD~ire~mr 200 (498)
..+|.+|+|+|.+||||||+|+.|+..+ |.. .++..|.+++.+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~ 68 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC 68 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh
Confidence 3578899999999999999999999987 332 3356688886544
No 98
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.59 E-value=0.00016 Score=72.93 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=43.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeE-EcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NLPNV-LQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl~~V-i~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+|+|+|.|||||||+|+.|+..+ +...+ +..|.+. ..+. . |... ..|. .+...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-~~~~---------~-y~~~--~~Ek----------~~R~~ 59 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-IDRN---------D-YADS--KKEK----------EARGS 59 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH--TTS---------S-S--G--GGHH----------HHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-cchh---------h-hhch--hhhH----------HHHHH
Confidence 78999999999999999999976 45543 3444444 1110 1 1110 1111 12334
Q ss_pred HHHHHHHHhhCCCcEEEEcccCCcccc
Q 010885 238 LAGDLKKAMKDGKPIIIEGIHLDPSIY 264 (498)
Q Consensus 238 L~~~IekaL~eG~sVIVEGthL~P~l~ 264 (498)
+...+.+.+.....||+|+.+.-.++.
T Consensus 60 l~s~v~r~ls~~~iVI~Dd~nYiKg~R 86 (270)
T PF08433_consen 60 LKSAVERALSKDTIVILDDNNYIKGMR 86 (270)
T ss_dssp HHHHHHHHHTT-SEEEE-S---SHHHH
T ss_pred HHHHHHHhhccCeEEEEeCCchHHHHH
Confidence 677778888889999999999655544
No 99
>PRK13973 thymidylate kinase; Provisional
Probab=97.57 E-value=0.00048 Score=66.28 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=53.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc--------chhHHHHHhcCCCCCCCCCccccccccChHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFV 228 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi~--------tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~ 228 (498)
.++|+|-|+.||||||+++.|++.| |+..+.. .+.+|+.+...... .+ ++.....-|.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~------~~-----~~~~~~ll~~ 71 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAE------LY-----GPRMEALLFA 71 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCcc------CC-----CHHHHHHHHH
Confidence 4689999999999999999999999 7776543 45666654431100 01 1111111121
Q ss_pred hcchhHHHHHHHHHHHHhhCCCcEEEEccc
Q 010885 229 RECRIVRKGLAGDLKKAMKDGKPIIIEGIH 258 (498)
Q Consensus 229 ~q~~~V~egL~~~IekaL~eG~sVIVEGth 258 (498)
. .-.+-+...+..++.+|..||.|...
T Consensus 72 a---~r~~~~~~~i~~~l~~g~~Vi~DRy~ 98 (213)
T PRK13973 72 A---ARDDHVEEVIRPALARGKIVLCDRFI 98 (213)
T ss_pred H---HHHHHHHHHHHHHHHCCCEEEEcchh
Confidence 1 11233455677888999999988844
No 100
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.00016 Score=68.19 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=33.5
Q ss_pred EcCCCCcHHHHHHHHHHhcCCCeEEcchhH-HHHH-hcCCCCCCCCCccc
Q 010885 166 CGTACVGKSTIATQLAQRLNLPNVLQTDMV-YELL-RTSTDAPLSSSPVW 213 (498)
Q Consensus 166 ~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i-re~m-r~~~~~pLss~~~W 213 (498)
+|.+||||||++..||.+||+.++..+|.. ++.. ++..+.|+.+...|
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~ 50 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRW 50 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhh
Confidence 499999999999999999999987555432 2221 22345677655443
No 101
>PLN02199 shikimate kinase
Probab=97.55 E-value=0.00056 Score=70.57 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
...|++.|.+||||||+++.||+.+|++++..++.+.+.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~ 142 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN 142 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc
Confidence 45789999999999999999999999998654444555433
No 102
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=7.8e-05 Score=63.73 Aligned_cols=27 Identities=44% Similarity=0.660 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
|+|.|+||+||||+|+.+|+.++.+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~ 27 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI 27 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc
Confidence 689999999999999999999997754
No 103
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.53 E-value=0.00015 Score=66.47 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
.+|+|.|++||||||++..|+..++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcccc
Confidence 4799999999999999999998775443
No 104
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.53 E-value=0.00022 Score=72.68 Aligned_cols=43 Identities=30% Similarity=0.319 Sum_probs=35.1
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
+...++..|+++|++||||||+++.||++||+++| ..|...+.
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i-d~D~~i~~ 170 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV-ELNREIER 170 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-eHHHHHHH
Confidence 33456789999999999999999999999999987 45654443
No 105
>PLN02165 adenylate isopentenyltransferase
Probab=97.53 E-value=0.00018 Score=75.10 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
++..+|+|.|++||||||+|..||..+|... ++.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eI-IsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEI-INSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCce-ecCChh
Confidence 3456899999999999999999999999875 466765
No 106
>PLN02840 tRNA dimethylallyltransferase
Probab=97.52 E-value=0.00016 Score=77.55 Aligned_cols=42 Identities=38% Similarity=0.510 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~--ire~mr 200 (498)
.++.+|+|.|++||||||+|..||++++... ++.|. +++.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~i-is~Ds~qvYr~~~ 62 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEI-ISADSVQVYRGLD 62 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCe-Eeccccceeccee
Confidence 4567899999999999999999999999885 45665 344444
No 107
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.51 E-value=0.00011 Score=68.55 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+|.|+|.+||||||++..|++ +|++++.+++..++.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~ 38 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence 489999999999999999998 99998766555666544
No 108
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.00025 Score=70.37 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+|++.|+|||||||+|+.||+.|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 78999999999999999999988
No 109
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.49 E-value=0.00014 Score=69.44 Aligned_cols=40 Identities=30% Similarity=0.268 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
++|.|+|++||||||+++.|++.+|++++.+++..++.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~ 41 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALA 41 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHh
Confidence 3799999999999999999999889998765555555543
No 110
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.49 E-value=0.00018 Score=75.70 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=56.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHhhc-----cCCCeE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE-YISRYRMMTRFHH-----QRVPLV 162 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~-~a~rY~L~~~~~~-----~r~P~i 162 (498)
|..+|..+.-.|.++.-++.++..++...++.++...-=.-.-+.+....-||.+ .+. .++..++. ..+..+
T Consensus 3 ~~eyL~~~~~~p~~~~~a~qr~~dmI~~~g~~~~~~~~~~~~~y~~F~~~~~G~~~~i~--~lv~~l~~~a~g~~~~r~i 80 (361)
T smart00763 3 LAEYLDIVKEDPLVAANAHQRLLDMIGEAGVEDVVENNRGIKRYRFFDHDFFGMEEAIE--RFVNYFKSAAQGLEERKQI 80 (361)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHhccCcEEeccCCcceeeccccchhccCcHHHHH--HHHHHHHHHHhcCCCCCcE
Confidence 5677888888888888888888888877666543210000000111111112211 011 11222211 224578
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
++|+|||||||||+|..|+..++.
T Consensus 81 l~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 81 LYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999964
No 111
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.45 E-value=0.00019 Score=68.20 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+.+|.|+|++||||||++..|++ +|++++.+++..++.+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~ 41 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVE 41 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhh
Confidence 46899999999999999999998 99998765555666543
No 112
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0003 Score=72.66 Aligned_cols=95 Identities=25% Similarity=0.387 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHHhcCCCCCCCC----Cccccccc-c-ChHHHHHHHhhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELLRTSTDAPLSS----SPVWARNF-S-SSEELVTEFVRE 230 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i--re~mr~~~~~pLss----~~~W~~~f-~-s~EelI~~f~~q 230 (498)
.|.+|+|+||.|||||-+|-.||+++|... ++.|.+ ++.|.-.+..|... .++.--++ + +..-....|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eI-Is~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~- 79 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEI-ISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQR- 79 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcE-EecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHH-
Confidence 467999999999999999999999999995 577864 55555333333210 11100000 0 00112333433
Q ss_pred chhHHHHHHHHHHHHhhCC-CcEEEEcccCCc
Q 010885 231 CRIVRKGLAGDLKKAMKDG-KPIIIEGIHLDP 261 (498)
Q Consensus 231 ~~~V~egL~~~IekaL~eG-~sVIVEGthL~P 261 (498)
.....+.....+| -+|||-|+.|--
T Consensus 80 ------~a~~~i~~i~~rgk~pIlVGGTglY~ 105 (308)
T COG0324 80 ------DALAAIDDILARGKLPILVGGTGLYL 105 (308)
T ss_pred ------HHHHHHHHHHhCCCCcEEEccHHHHH
Confidence 2344455556677 677799988543
No 113
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.42 E-value=0.00016 Score=70.64 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+++|.|.|++||||||+|+.||+++|+.++..++.+|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 57999999999999999999999999999766666665
No 114
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.39 E-value=0.0011 Score=60.51 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL---NLPNV 189 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V 189 (498)
++|+|.|++||||||+++.|++.+ |...+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 479999999999999999999998 65543
No 115
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.00049 Score=73.60 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=57.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT 168 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~ 168 (498)
|.+.|...|+++..|.+|..++......... .+...+.+.|.+. +.. ....+ + ..+.+|+|+|+
T Consensus 166 ~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~L~~~-l~~---~~~~~---~---~~~~~i~~vGp 229 (424)
T PRK05703 166 LYKRLKRSGLSPEIAEKLLKLLLEHMPPRER------TAWRYLLELLANM-IPV---RVEDI---L---KQGGVVALVGP 229 (424)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHH-hCc---ccccc---c---cCCcEEEEECC
Confidence 5578889999999999999988776543221 2334444444331 100 00001 1 12458999999
Q ss_pred CCCcHHHHHHHHHHhcC-----CC-eEEcchhHH
Q 010885 169 ACVGKSTIATQLAQRLN-----LP-NVLQTDMVY 196 (498)
Q Consensus 169 pGSGKSTlA~~LA~~Lg-----l~-~Vi~tD~ir 196 (498)
+|+||||++..||.++- .. .++..|..|
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 99999999999987652 22 245677765
No 116
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.35 E-value=0.00019 Score=59.52 Aligned_cols=28 Identities=43% Similarity=0.604 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+..++|.|+|||||||++..|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4579999999999999999999999765
No 117
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.34 E-value=0.00022 Score=67.59 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC--eEEcchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLP--NVLQTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~--~Vi~tD~i 195 (498)
.+|.+|.|+|+|||||||++..|+..++.. .++..|.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 578999999999999999999999998422 23455554
No 118
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.00088 Score=73.05 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEE
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVC 166 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~-~~r~P~iIlI~ 166 (498)
-|...|..+|+.+..|.+|..+++..... ++..+.+.+.|.+. +....... ....+.+|+|+
T Consensus 200 ~l~~~Ll~~dv~~~la~~l~~~l~~~~~~--------~~~~~~l~~~l~~~---------l~~~~~~~~~~~~g~Vi~Lv 262 (484)
T PRK06995 200 ALLKHLLAAGFSAQLVRMLVDNLPEGDDA--------EAALDWVQSALAKN---------LPVLDSEDALLDRGGVFALM 262 (484)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhhhch--------hHHHHHHHHHHHHH---------HhhccCccccccCCcEEEEE
Confidence 35577888899999999999888765321 12333333333221 11100000 01346799999
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 010885 167 GTACVGKSTIATQLAQRL 184 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L 184 (498)
|++|+||||++..||..+
T Consensus 263 GpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 263 GPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCCCccHHHHHHHHHHHH
Confidence 999999999999999766
No 119
>PLN02842 nucleotide kinase
Probab=97.31 E-value=0.00066 Score=74.33 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=33.4
Q ss_pred EEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 164 LVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 164 lI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+|.|+|||||||+|+.|++++|+.++..+|.+|..+.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~ 37 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVS 37 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhc
Confidence 5899999999999999999999999888888887653
No 120
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.29 E-value=0.00052 Score=70.62 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i--re~mr 200 (498)
.+.+|+|+||+|||||.+|-.||++. . -|++.|.+ ++.|.
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~-~-eIIsaDS~QvYr~ld 44 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK-A-EIINVDSIQVYKEFD 44 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-C-cEEeccHHHHHCCCc
Confidence 45589999999999999999999994 3 46788874 44443
No 121
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.29 E-value=0.00038 Score=67.71 Aligned_cols=40 Identities=35% Similarity=0.472 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+++|-++|.+||||||+|+.+++ +|++.+.+++.+|+...
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~ 41 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVE 41 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHh
Confidence 56899999999999999999998 99999888888886544
No 122
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.27 E-value=0.00084 Score=63.95 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.|++|+|+|||||||||+++.|.+++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999999998876
No 123
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.27 E-value=0.00067 Score=63.67 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
...+|+|.|++||||||++..|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 457899999999999999999999875
No 124
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.27 E-value=0.00024 Score=77.74 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=34.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
..+|.+|.|.|++||||||+|+.||++||+.++..++..|.
T Consensus 281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~ 321 (512)
T PRK13477 281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321 (512)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehH
Confidence 34678999999999999999999999999998655556665
No 125
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.26 E-value=0.0017 Score=60.31 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.++|+|.|++||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999984
No 126
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.24 E-value=0.00044 Score=67.37 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
..|.+|.|+|.+||||||+++.|++++|++++.++...++.+
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~ 45 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREIT 45 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHH
Confidence 457899999999999999999999999999765444445544
No 127
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.24 E-value=0.00035 Score=71.41 Aligned_cols=96 Identities=27% Similarity=0.403 Sum_probs=53.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHhcCCCCCCCC----CccccccccChHH--HHHHHhhcchh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLRTSTDAPLSS----SPVWARNFSSSEE--LVTEFVRECRI 233 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~--ire~mr~~~~~pLss----~~~W~~~f~s~Ee--lI~~f~~q~~~ 233 (498)
+|+|+||+|||||++|..|+++++... ++.|. +++.|.-.+..|... .+++--++-++.+ .+..|..
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~i-is~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~---- 75 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEI-ISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQT---- 75 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcE-EEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHH----
Confidence 489999999999999999999999885 46665 445544333222210 0111001111111 1233322
Q ss_pred HHHHHHHHHHHHhhCCC-cEEEEcccCCccccc
Q 010885 234 VRKGLAGDLKKAMKDGK-PIIIEGIHLDPSIYL 265 (498)
Q Consensus 234 V~egL~~~IekaL~eG~-sVIVEGthL~P~l~~ 265 (498)
.....++.....|+ +|||-|+.+--.-+.
T Consensus 76 ---~a~~~i~~~~~~g~~pi~vGGTg~Yi~all 105 (287)
T TIGR00174 76 ---LALNAIADITARGKIPLLVGGTGLYLKALL 105 (287)
T ss_pred ---HHHHHHHHHHhCCCCEEEEcCcHHHHHHHH
Confidence 23344455556666 677999985544433
No 128
>PRK05439 pantothenate kinase; Provisional
Probab=97.23 E-value=0.00072 Score=69.89 Aligned_cols=49 Identities=33% Similarity=0.455 Sum_probs=36.0
Q ss_pred HHHHHHhh---ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC------CeEEcchhHH
Q 010885 148 YRMMTRFH---HQRVPLVILVCGTACVGKSTIATQLAQRLNL------PNVLQTDMVY 196 (498)
Q Consensus 148 Y~L~~~~~---~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl------~~Vi~tD~ir 196 (498)
......|. ..+.|.+|.|+|+|||||||+|+.|+..++- ..+++.|.+.
T Consensus 71 ~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 71 QAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred HHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 34455554 3567999999999999999999999987742 2345666654
No 129
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.23 E-value=0.00023 Score=67.00 Aligned_cols=27 Identities=44% Similarity=0.576 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
++|+|.|+|||||||+|..|+.+++.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence 379999999999999999999998754
No 130
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.21 E-value=0.0023 Score=59.52 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++|+|.|++||||||+++.|++.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999987
No 131
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.00074 Score=72.03 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=66.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCC
Q 010885 90 SRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTA 169 (498)
Q Consensus 90 sR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~p 169 (498)
-++|...||....+.+|..++...+....... .+++.+.+.+.|... ... ...+ ....+.+|+|+|++
T Consensus 148 ~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~--~~~v~~~~~~~L~~~-l~~--~~~~-------~~~~~~ii~lvGpt 215 (407)
T PRK12726 148 VKFLKGRGISDTYVADFMQAGRKQFKQVETAH--LDDITDWFVPYLSGK-LAV--EDSF-------DLSNHRIISLIGQT 215 (407)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcccccccc--HHHHHHHHHHHhcCc-Eee--CCCc-------eecCCeEEEEECCC
Confidence 78899999999999999999977655433222 356777777776552 110 0011 12357799999999
Q ss_pred CCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 010885 170 CVGKSTIATQLAQRL---NLP-NVLQTDMVYE 197 (498)
Q Consensus 170 GSGKSTlA~~LA~~L---gl~-~Vi~tD~ire 197 (498)
||||||++..||..+ |.. .++..|..|-
T Consensus 216 GvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 216 GVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 999999999999866 433 2457777653
No 132
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.17 E-value=0.0019 Score=72.41 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
.+|.|.||+||||||+|+.||++||+.++..++.+|..
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 47999999999999999999999999986555555543
No 133
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.17 E-value=0.0017 Score=70.66 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
.|+|+|++||||||+++.||+++|++++ .+|.+.+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~i-d~D~~i~~~ 38 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFI-DMDEEIERR 38 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEE-ECcHHHHHH
Confidence 5899999999999999999999999987 455555443
No 134
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00041 Score=68.62 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC--eEEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLP--NVLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~--~Vi~tD~ire 197 (498)
++.+|.|+|+|||||||+|+.|...++.. .+++.|.+++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk 47 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK 47 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc
Confidence 45899999999999999999999999844 5567777766
No 135
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.14 E-value=0.00029 Score=67.77 Aligned_cols=38 Identities=34% Similarity=0.465 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYE 197 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L---gl~-~Vi~tD~ire 197 (498)
|.+|+++||+|+||||++.+||.++ |.+ -+++.|..|-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 7899999999999999999999987 333 2456777663
No 136
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00064 Score=67.33 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
.++|-|-||+||||||+|+.||++||+.++..+=+.|.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa 41 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRA 41 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHH
Confidence 36899999999999999999999999999765555554
No 137
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.14 E-value=0.00034 Score=65.99 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
||.|+|+|||||||+|+.|+..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999996
No 138
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0023 Score=68.73 Aligned_cols=81 Identities=19% Similarity=0.074 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 87 FLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 87 glLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
..|.+.|..+|+.+..|.++..++........ ..+.+...+.+.|..... ..+ ...+.+|.++
T Consensus 135 ~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~-------~~~------~~~g~vi~lv 197 (420)
T PRK14721 135 MKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQ----SLKKTISLLTLNLRTIGG-------DEI------IEQGGVYALI 197 (420)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHhcCC-------ccc------cCCCcEEEEE
Confidence 45568899999999999999988876533111 122233333332221100 001 1345699999
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 010885 167 GTACVGKSTIATQLAQRL 184 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L 184 (498)
|++|+||||+...||.++
T Consensus 198 GpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 198 GPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999999764
No 139
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.13 E-value=0.00038 Score=66.88 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L-gl~~Vi~tD~ire 197 (498)
+|.|+|+|||||||+|+.|++.+ ++.. ++.|.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~-i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCV-IHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeE-EccccccC
Confidence 58899999999999999999999 4554 55665543
No 140
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.13 E-value=0.0018 Score=64.11 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=46.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC--eEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcch
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP--NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECR 232 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~--~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~ 232 (498)
..+.+|+++|.|+.|||++|+.|++.| |+. ....+|.-|+......+ ...|.. ...+. .....+
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~-----~~ff~p--~n~~~--~~~R~~-- 78 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQD-----AEFFDP--DNEEA--KKLREQ-- 78 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S------GGGGST--T-HHH--HHHHHH--
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccc-----cccCCC--CChHH--HHHHHH--
Confidence 357899999999999999999999887 433 33344555554322111 111111 11111 111111
Q ss_pred hHHHHHHHHHHHHhh--CCCcEEEEcccCCccccc
Q 010885 233 IVRKGLAGDLKKAMK--DGKPIIIEGIHLDPSIYL 265 (498)
Q Consensus 233 ~V~egL~~~IekaL~--eG~sVIVEGthL~P~l~~ 265 (498)
+.....+++..+|. .|...|+||++...+...
T Consensus 79 -~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~ 112 (222)
T PF01591_consen 79 -IAKEALEDLIEWLQEEGGQVAIFDATNSTRERRK 112 (222)
T ss_dssp -HHHHHHHHHHHHHHTS--SEEEEES---SHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH
Confidence 11222333334554 677889999996654443
No 141
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.11 E-value=0.002 Score=70.83 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
..|++.|.+||||||+++.||++||++++..++.+.+.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~ 44 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE 44 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH
Confidence 46889999999999999999999999997655555544
No 142
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.09 E-value=0.00081 Score=64.70 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+.|++|.|+|.+||||||++..|+. +|+..+. .|.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d-~D~i~~ 40 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFE-ADRVAK 40 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEe-ccHHHH
Confidence 4578999999999999999999986 8998754 554433
No 143
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.09 E-value=0.00041 Score=55.68 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+|+|+|+|||||||+++.|+.++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 144
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.06 E-value=0.0014 Score=67.21 Aligned_cols=41 Identities=32% Similarity=0.561 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhc---cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 145 ISRYRMMTRFHH---QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 145 a~rY~L~~~~~~---~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+..+...|.+ .+.|.+|.|+|++||||||+|+.|...+.
T Consensus 44 ~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 44 LRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred hhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334445555543 35799999999999999999998877663
No 145
>PRK13975 thymidylate kinase; Provisional
Probab=97.05 E-value=0.00056 Score=63.63 Aligned_cols=28 Identities=36% Similarity=0.348 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+++|+|.|++||||||+++.|+++++..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999854
No 146
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0032 Score=66.72 Aligned_cols=96 Identities=17% Similarity=0.085 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEE
Q 010885 87 FLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILV 165 (498)
Q Consensus 87 glLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~-~~r~P~iIlI 165 (498)
.-|.+.|..+|+.+..|.++...+..... .-+.+...+.+..++... ........ ......+++|
T Consensus 77 ~~l~~~L~~~g~~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~---------l~~~~~~~~~~~~g~ii~l 142 (374)
T PRK14722 77 GALTKYLFAAGFSAQLVRMIVDNLPEGEG-----YDTLDAAADWAQSVLAAN---------LPVLDSEDALMERGGVFAL 142 (374)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhhhcc-----cCCHHHHHHHHHHHHHhc---------chhhcCCCccccCCcEEEE
Confidence 45557799999999888888887644211 112233344444444331 11111110 1234569999
Q ss_pred EcCCCCcHHHHHHHHHHhc----CCC--eEEcchhHH
Q 010885 166 CGTACVGKSTIATQLAQRL----NLP--NVLQTDMVY 196 (498)
Q Consensus 166 ~G~pGSGKSTlA~~LA~~L----gl~--~Vi~tD~ir 196 (498)
+||+|+||||++..||.++ |.. .++.+|.+|
T Consensus 143 vGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 143 MGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 9999999999999999764 422 245667764
No 147
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0022 Score=73.34 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=58.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEc
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCG 167 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~-~~r~P~iIlI~G 167 (498)
|-+.|..+||.+..+.+|..++++. .+.+++...+.+.|.+. +.+..... .-..+.+|+|+|
T Consensus 130 l~~~Ll~~dv~~~la~~l~~~l~~~--------~~~~~~~~~l~~~L~~~---------l~il~~~~~~~~~g~Vi~lVG 192 (767)
T PRK14723 130 LFRWLLGAGFSGQLARALLERLPVG--------YDRPAAMAWIRNELATH---------LPVLRDEDALLAQGGVLALVG 192 (767)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHH---------hhhccCCCcccCCCeEEEEEC
Confidence 5577889999999999998888643 12234445555544331 11110000 012467999999
Q ss_pred CCCCcHHHHHHHHHHhc----CC-C-eEEcchhHH
Q 010885 168 TACVGKSTIATQLAQRL----NL-P-NVLQTDMVY 196 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L----gl-~-~Vi~tD~ir 196 (498)
++|+||||++..||..+ |. . .++..|..|
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 99999999999999766 32 2 345778766
No 148
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.01 E-value=0.0011 Score=71.37 Aligned_cols=34 Identities=38% Similarity=0.508 Sum_probs=30.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.-.|..|++.||||||||++|+.||..++++++.
T Consensus 44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~ 77 (441)
T TIGR00390 44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 77 (441)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 3357899999999999999999999999998753
No 149
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.01 E-value=0.0014 Score=60.71 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.1
Q ss_pred EcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 166 CGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 166 ~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
.|+|||||||+++.|+.++|..++ .+|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~-~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFL-DGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEE-eCccC
Confidence 499999999999999999998875 56664
No 150
>PTZ00301 uridine kinase; Provisional
Probab=97.01 E-value=0.00049 Score=67.05 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc----CC--CeEEcchhHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL----NL--PNVLQTDMVYE 197 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L----gl--~~Vi~tD~ire 197 (498)
.+|.|+|+|||||||+|..|++++ |- ..++..|.++.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 589999999999999999998776 22 22556676654
No 151
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.99 E-value=0.00082 Score=66.79 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ir 196 (498)
.+++|.||+|+|||.+|-.||+++|.+. +..|.+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pv-I~~Driq 36 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPV-ISLDRIQ 36 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EE-EEE-SGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCE-EEeccee
Confidence 3789999999999999999999999996 4677653
No 152
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.96 E-value=0.0017 Score=63.05 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=27.0
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
...+|.+|.|.|++||||||+++.|+..+.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456799999999999999999999998874
No 153
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.96 E-value=0.00089 Score=63.76 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl--~~Vi~tD~i 195 (498)
+++.+|.|+|++||||||+++.|+..++. ..++..|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 45679999999999999999999988762 223455544
No 154
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.94 E-value=0.0077 Score=68.87 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-----------------Ccc--cccHHHH-HHHHHHHHHhcCCChhh---
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDN-----------------SLL--DVSQSDL-EANLFKLMERRGYGEEY--- 144 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~-----------------~v~--~I~q~eL-e~~V~~lL~~~~yge~~--- 144 (498)
-|..-|..++++.++..++-.++++.-.-. +.+ ..+.+.+ -..+.+.|.+.-||.+.
T Consensus 251 ~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~ 330 (775)
T TIGR00763 251 KLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKE 330 (775)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHH
Confidence 456667777888777777777776432100 000 1111110 12223344444455331
Q ss_pred -HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 145 -ISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 145 -a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+..|..+........+.+++++||||+|||++|+.||..++.+.+
T Consensus 331 ~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 331 RILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred HHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 222322222222223458999999999999999999999987764
No 155
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.93 E-value=0.00077 Score=76.12 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+|.|.|+|||||||+|+.||++||+.++..++++|.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~ 38 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHH
Confidence 789999999999999999999999999877776666
No 156
>PRK07667 uridine kinase; Provisional
Probab=96.92 E-value=0.00095 Score=63.31 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+.+|.|+|+|||||||+|..|+..++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999999873
No 157
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.92 E-value=0.00082 Score=59.30 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
|++.|+||+|||++|+.||+.++.+.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 789999999999999999999987753
No 158
>PLN02348 phosphoribulokinase
Probab=96.90 E-value=0.0012 Score=70.41 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=27.8
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
....+|.+|-|+|+|||||||+|+.|+..||
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3446789999999999999999999999996
No 159
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.89 E-value=0.00086 Score=61.10 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=45.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHHHHHH
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDL 242 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~~~I 242 (498)
|.|+|++|+||||++..|+++ |++.| .+..|+.+......... ...|. + -...|.. .+.+.-....
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~~~~~~~~-~~~~~------~-~~~~~~~---~~l~~~~~~~ 67 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEEGGRRDRD-TLPWE------D-DLLAFQE---GILEQQLEAE 67 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHHSSSS-TT-SS-TT--------THHHHHH---H--HHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHHhccccch-hhhhc------c-hHHHHHH---HHHHHHHHHH
Confidence 799999999999999999988 88864 77777766543211100 00111 0 0111111 1111111222
Q ss_pred HHHhhCCCcEEEEcccCCcccccc
Q 010885 243 KKAMKDGKPIIIEGIHLDPSIYLM 266 (498)
Q Consensus 243 ekaL~eG~sVIVEGthL~P~l~~~ 266 (498)
.. ......+|.|..-+.+-.|..
T Consensus 68 ~~-~~~~~~vi~Dr~~~d~~aY~~ 90 (163)
T PF13521_consen 68 AS-AKSSDVVICDRGPLDTLAYSE 90 (163)
T ss_dssp HH-HH-SSEEEESS-HHHHHHHHH
T ss_pred Hh-hcCCCcEEEeCChHHHHHHHH
Confidence 22 256788889999888888764
No 160
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.89 E-value=0.0021 Score=63.54 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+..+++.|+|||||||+|+.+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 161
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0026 Score=71.13 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|+=+|+.||||||||.+|+++|.++|++.+.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCceEe
Confidence 457789999999999999999999999998754
No 162
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.86 E-value=0.00095 Score=61.48 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
+|+|+|+|||||||+++.|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 7899999999999999999998864
No 163
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.86 E-value=0.0017 Score=62.41 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.+|.|+|.+||||||+++.|+. +|++++.+++..++.+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~ 40 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVE 40 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHh
Confidence 3799999999999999999987 89997655555555544
No 164
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.86 E-value=0.00076 Score=63.51 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg---l~-~Vi~tD~ire 197 (498)
+|.|+|+|||||||+|..|+..++ .. .+++.|.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 589999999999999999999873 22 2456666654
No 165
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.85 E-value=0.0028 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
....++|.|+||+||||+++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999988
No 166
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.84 E-value=0.00092 Score=62.79 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC--CCeEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN--LPNVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg--l~~Vi~tD~ire 197 (498)
+|.|.|++||||||+++.|+..++ -..++..|.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 578999999999999999999873 233556666543
No 167
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.84 E-value=0.0033 Score=57.61 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=26.7
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+++|+++.+.|+||+|||.+++.||+.|
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 36789999999999999999999999985
No 168
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.83 E-value=0.01 Score=64.83 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.|.-|++.||||||||++|+.+|..+|++.+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~ 288 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL 288 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 46788999999999999999999999998864
No 169
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.83 E-value=0.0013 Score=76.17 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
++|.|.|||||||||+|+.||++||+.++..++++|..
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 38999999999999999999999999987655666653
No 170
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.83 E-value=0.0022 Score=69.26 Aligned_cols=32 Identities=41% Similarity=0.542 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.|..|+|.|||||||||+|+.||+.++++++.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~ 80 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChhee
Confidence 47899999999999999999999999998753
No 171
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.80 E-value=0.0011 Score=63.57 Aligned_cols=30 Identities=27% Similarity=0.672 Sum_probs=25.9
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 154 FHHQRVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 154 ~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
|..+..|++|+|+|+|||||||++..|.+.
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 445678899999999999999999999754
No 172
>PRK15453 phosphoribulokinase; Provisional
Probab=96.79 E-value=0.0011 Score=67.96 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC---C-CeEEcchhHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN---L-PNVLQTDMVYE 197 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg---l-~~Vi~tD~ire 197 (498)
+++.+|.|+|.|||||||+|+.|+..++ . ..++..|.+++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 5678999999999999999999998774 3 23456676653
No 173
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.78 E-value=0.002 Score=67.87 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|.-|+++|+||||||++|+.+|.+++..++
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i 194 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 194 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEE
Confidence 46778999999999999999999999997754
No 174
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.73 E-value=0.0018 Score=64.69 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
...+++.||||+||||+|..+|+.+|....
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 347899999999999999999999997753
No 175
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0052 Score=64.95 Aligned_cols=72 Identities=24% Similarity=0.400 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 105 KIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 105 rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.|..++-++++|+ ++-+..|.-.|+++ -+|-.|-..++..-.|..||+.||.|+|||-+|++||+-.
T Consensus 8 eIV~eLd~yIIGQ-------~~AKkaVAIALRNR------~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~ 74 (444)
T COG1220 8 EIVSELDRYIIGQ-------DEAKKAVAIALRNR------WRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_pred HHHHHHHhHhcCc-------HHHHHHHHHHHHHH------HHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh
Confidence 4666777666654 44444444444442 2233455566666689999999999999999999999999
Q ss_pred CCCeE
Q 010885 185 NLPNV 189 (498)
Q Consensus 185 gl~~V 189 (498)
|.+++
T Consensus 75 ~aPFi 79 (444)
T COG1220 75 GAPFI 79 (444)
T ss_pred CCCeE
Confidence 98875
No 176
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.71 E-value=0.0016 Score=61.44 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM 194 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ 194 (498)
.+++|.|++||||||+++.|+..++..++ .+|.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i-~gd~ 36 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFI-DGDD 36 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEE-CCcc
Confidence 37899999999999999999999998764 5555
No 177
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.70 E-value=0.0034 Score=65.09 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|.-++|.|+||||||++|+.++..++..++
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~ 185 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence 45778999999999999999999999987754
No 178
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.67 E-value=0.0014 Score=61.44 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++|+++|||||||+|++..|....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999886
No 179
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.65 E-value=0.0033 Score=66.87 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|.-|++.|+||||||++|+.+|..++...+
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi 208 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI 208 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46788999999999999999999999988764
No 180
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.65 E-value=0.0021 Score=68.51 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=31.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
-+.|++++|.||||||||.+|+.+|.++|+..+.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~ 178 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIV 178 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEE
Confidence 4679999999999999999999999999998653
No 181
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.63 E-value=0.0049 Score=65.94 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
..|+|.|+||||||++|+.||..++.+++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 468999999999999999999999988753
No 182
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.0065 Score=67.32 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEE
Q 010885 85 SRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVIL 164 (498)
Q Consensus 85 SRglLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIl 164 (498)
.+..|.+.|...|+....+.++..++.... ...+....+...|.+. .. ..... ..+...+|.
T Consensus 293 ~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~--------~~~~~~~~l~~~L~~~-l~---v~~~~------~l~~G~vIa 354 (559)
T PRK12727 293 VRAQALELMDDYGFDAGLTRDVAMQIPADT--------ELHRGRGLMLGLLSKR-LP---VAPVD------PLERGGVIA 354 (559)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhhccc--------chhhHHHHHHHHHHHh-cC---cCccc------cccCCCEEE
Confidence 344555778888888887777777664321 1122333444444331 00 00000 112356899
Q ss_pred EEcCCCCcHHHHHHHHHHhc-----CCC-eEEcchhHH
Q 010885 165 VCGTACVGKSTIATQLAQRL-----NLP-NVLQTDMVY 196 (498)
Q Consensus 165 I~G~pGSGKSTlA~~LA~~L-----gl~-~Vi~tD~ir 196 (498)
|+|++|+||||++..|+..+ +.. .++.+|..|
T Consensus 355 LVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 355 LVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 99999999999999998764 122 245667654
No 183
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.61 E-value=0.0058 Score=61.80 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++|.|+|||||||+|+.+|..+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999999888766
No 184
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.60 E-value=0.0081 Score=55.10 Aligned_cols=29 Identities=38% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 169 ACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 169 pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
|||||||+++.||+.||++++..++.+.+
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~ 29 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE 29 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHH
Confidence 79999999999999999999765444544
No 185
>PHA00729 NTP-binding motif containing protein
Probab=96.58 E-value=0.0025 Score=63.41 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
....|+|.|+||+||||+|..|+.+++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999986
No 186
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.57 E-value=0.0048 Score=66.20 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
..|+|.||||+|||++|+.||..++++++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 479999999999999999999999988753
No 187
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.56 E-value=0.0055 Score=61.11 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..|..++|+|+||+|||++|..+|..++...
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3456789999999999999999999998663
No 188
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.55 E-value=0.0028 Score=69.68 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
...+++++||+||||||+.+.||+.+|+..+
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 3459999999999999999999999997643
No 189
>PLN02422 dephospho-CoA kinase
Probab=96.55 E-value=0.0035 Score=62.40 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+|.++|.+||||||++..|+ ++|+.++.+++..++.+.
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~ 40 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLK 40 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHH
Confidence 69999999999999999998 689998766666666654
No 190
>PLN02924 thymidylate kinase
Probab=96.54 E-value=0.014 Score=57.32 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+++++|.|.|..||||||++..|++.|+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999994
No 191
>PRK04195 replication factor C large subunit; Provisional
Probab=96.53 E-value=0.0034 Score=67.67 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.+..++|.|+||+||||+|..||+.+|+..+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~i 68 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVI 68 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 34678999999999999999999999997764
No 192
>CHL00181 cbbX CbbX; Provisional
Probab=96.52 E-value=0.0057 Score=62.17 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+..+++.|+||+||||+|+.+|..+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999999875
No 193
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.50 E-value=0.0054 Score=60.59 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=27.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM 194 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ 194 (498)
.+.|..++|+|+||+||||+|+.|+ +-..++..|.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~---~~~~~~~~d~ 43 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLP---GKTLVLSFDM 43 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcC---CCCEEEeccc
Confidence 3458889999999999999999986 4444555555
No 194
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.015 Score=65.95 Aligned_cols=99 Identities=23% Similarity=0.326 Sum_probs=60.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhhcC---------------------cccccHHHHHHHHHHHHHhcCCChh----h
Q 010885 90 SRMLTVTKIPNHVAIKIALELKKLLVDNS---------------------LLDVSQSDLEANLFKLMERRGYGEE----Y 144 (498)
Q Consensus 90 sR~Lt~agVa~~vA~rIa~elKk~Lv~~~---------------------v~~I~q~eLe~~V~~lL~~~~yge~----~ 144 (498)
.+-+...+++.++-.++-.++++.=.-.. ......-+|. ...++|.+..||-+ -
T Consensus 256 ~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~-~a~~iLd~dHYGLekVKeR 334 (782)
T COG0466 256 REKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLK-KAEKILDKDHYGLEKVKER 334 (782)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCccccchhhhHH-HHHHHhcccccCchhHHHH
Confidence 34455667777777777777766422110 0011222222 22456666667633 2
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 145 ISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 145 a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+-.|..+..+...-+-.+++++||||+|||++++.+|+.+|-.+|
T Consensus 335 IlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 335 ILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 444544555554445569999999999999999999999997765
No 195
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.48 E-value=0.0021 Score=62.67 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+|.|.|+|||||||+|+.|+..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999883
No 196
>PRK07429 phosphoribulokinase; Provisional
Probab=96.45 E-value=0.003 Score=65.57 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=27.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+|.+|-|.|++||||||+++.|+..++
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 46789999999999999999999999887
No 197
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.43 E-value=0.0094 Score=66.73 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH--HHHhcC-----CChh-hHHH---HH--HHHHh
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFK--LMERRG-----YGEE-YISR---YR--MMTRF 154 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~--lL~~~~-----yge~-~a~r---Y~--L~~~~ 154 (498)
-|..+|..+.-.|.++.-.+.++-..+...++.+-.++.--..++. .+..+. ||-. .+.+ |. .+..+
T Consensus 20 sl~eyL~~vk~~p~~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ieriv~~l~~Aa~gl 99 (644)
T PRK15455 20 SLQEYLELCKQDPSAYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQIVSYFRHAAQGL 99 (644)
T ss_pred cHHHHHHHHhcChHHHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccCcHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888888877763333222211111111111 112222 3311 1222 11 11111
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+..+++++||||+||||||+.||+.+.
T Consensus 100 --~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 100 --EEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred --CCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 22345999999999999999999999874
No 198
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.0057 Score=63.70 Aligned_cols=31 Identities=45% Similarity=0.539 Sum_probs=27.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.+.|..+++.|++|+||||+|+.+|+.+++.
T Consensus 35 ~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 35 GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 4567789999999999999999999999865
No 199
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.40 E-value=0.0047 Score=61.82 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.+|-|+|..||||||+++.|++.+|++.+.++...++.+.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~ 41 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQA 41 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHc
Confidence 4799999999999999999998899997654444455543
No 200
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.0052 Score=66.75 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=27.7
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..++++||||+||||+|+.+|+.+++.
T Consensus 32 ~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 32 KNSISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34456789999999999999999999999864
No 201
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0053 Score=61.46 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
++.-.++.|+||+||.|.|..|++.+++.++...|.+|+.+.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia 55 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIA 55 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHh
Confidence 467899999999999999999999999999888899999765
No 202
>PF05729 NACHT: NACHT domain
Probab=96.35 E-value=0.003 Score=55.79 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++++|.|.+|+||||+++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 378999999999999999999877
No 203
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.0032 Score=60.19 Aligned_cols=43 Identities=37% Similarity=0.420 Sum_probs=36.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---C-CCeEEcchhHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL---N-LPNVLQTDMVYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L---g-l~~Vi~tD~ire~mr 200 (498)
.+-.+|+|.|.+||||||+|-+|.+.| | +.+++..|-+|..+.
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN 75 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN 75 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence 356799999999999999999999888 3 567778899998754
No 204
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.013 Score=56.61 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=35.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELL 199 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~Vi~tD~ire~m 199 (498)
+++++++|.||+||||+...+.+.+ +...|..+|.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A 44 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIA 44 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHH
Confidence 5799999999999999999999999 777788889887754
No 205
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.34 E-value=0.0065 Score=65.58 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|.-++|+|+||||||++|+.+|..++..++
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 46778999999999999999999999987654
No 206
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.33 E-value=0.0053 Score=64.94 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=27.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
....+..++|.|+||+||||+|+.|++.++..++
T Consensus 32 ~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~ 65 (413)
T PRK13342 32 EAGRLSSMILWGPPGTGKTTLARIIAGATDAPFE 65 (413)
T ss_pred HcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3345557888999999999999999998887654
No 207
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0063 Score=68.31 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
..|.=||+.|||||||||+|+.||..-++.++.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 568899999999999999999999999888653
No 208
>PRK06761 hypothetical protein; Provisional
Probab=96.31 E-value=0.0039 Score=63.72 Aligned_cols=65 Identities=9% Similarity=0.149 Sum_probs=45.2
Q ss_pred EEEEEecccchHHHHHHhhhhc---------------ccccc---ccccchHHHHHhHHHHHHHhhhcccCCceEEEecC
Q 010885 376 PIVLKMADFDHKALLEEWILTH---------------TFGDK---CLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSA 437 (498)
Q Consensus 376 P~vl~~~~~dh~~lle~w~~~r---------------a~~~~---~~~~~~~~~i~nl~tIQdYLc~~~~q~~~vv~i~~ 437 (498)
|+++++...|=+..++.=.+-| +++.. -....-.++++--|.|+++|... -++....|++
T Consensus 183 p~l~yl~~~dv~~~~~~~~~eR~~~W~~~~~~~~~~~~y~~~~~~~g~~G~i~~~~~r~~~e~~~~~~--L~~~~~~i~~ 260 (282)
T PRK06761 183 PMLFYLEQDDVEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNLSGVEGRIKVLEARKNLELEILDM--LKMKKEKINN 260 (282)
T ss_pred cEEEEecccCHHHHHHHHHHhcchHHHHHHHHHHhcCcHHhhcCCCCchhHHHHHHHHHHHHHHHHHh--CCCceEEcCC
Confidence 8999999998887775533333 22111 01122258889999999999976 4688888888
Q ss_pred CCccc
Q 010885 438 TTFPQ 442 (498)
Q Consensus 438 ~~~~~ 442 (498)
+.++.
T Consensus 261 ~~~~~ 265 (282)
T PRK06761 261 TKEEI 265 (282)
T ss_pred cccch
Confidence 88775
No 209
>PRK09087 hypothetical protein; Validated
Probab=96.29 E-value=0.0036 Score=61.39 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=51.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGD 241 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~~~ 241 (498)
.++|.|++|||||++++.++...+..++...+...+.+.......+. .+.+.. .. ...+.+...
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~-iDDi~~-~~--------------~~~~~lf~l 109 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVL-IEDIDA-GG--------------FDETGLFHL 109 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEE-EECCCC-CC--------------CCHHHHHHH
Confidence 57999999999999999999988888764433222222111000000 000000 00 011346666
Q ss_pred HHHHhhCCCcEEEEcccCCccccc
Q 010885 242 LKKAMKDGKPIIIEGIHLDPSIYL 265 (498)
Q Consensus 242 IekaL~eG~sVIVEGthL~P~l~~ 265 (498)
+..+...|+.+|+-+..-.|.+-.
T Consensus 110 ~n~~~~~g~~ilits~~~p~~~~~ 133 (226)
T PRK09087 110 INSVRQAGTSLLMTSRLWPSSWNV 133 (226)
T ss_pred HHHHHhCCCeEEEECCCChHHhcc
Confidence 666777899999888765555544
No 210
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.28 E-value=0.005 Score=59.25 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+|.|+|++||||||++..|+. +|+..+.+++..++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~ 38 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTE 38 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHh
Confidence 478999999999999999975 79887766555565543
No 211
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.28 E-value=0.0038 Score=59.55 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
++|-|+|..||||||+++.|++ +|++.+.++...++.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l 37 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHEL 37 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHC
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHH
Confidence 4799999999999999999987 999976544444443
No 212
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.26 E-value=0.0035 Score=58.46 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
+|+|.|+.||||||+++.|++++|+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~ 27 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEV 27 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcc
Confidence 488999999999999999999888654
No 213
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.26 E-value=0.012 Score=55.48 Aligned_cols=26 Identities=50% Similarity=0.635 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+++|.|++|||||++|..++...+-+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 47999999999999999999886644
No 214
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0058 Score=66.10 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=34.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEE-------cchhHHHHHhcCC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVL-------QTDMVYELLRTST 203 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi-------~tD~ire~mr~~~ 203 (498)
=.|+.||||+||||+..++|..|++..+. .+|.+|+.|....
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~ 285 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATP 285 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCC
Confidence 47999999999999999999999876543 4456888876543
No 215
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.22 E-value=0.0047 Score=61.44 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
-|++.|+||+|||++|+.||..+|.+.+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4678999999999999999999998865
No 216
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.22 E-value=0.0074 Score=67.86 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCC----eEEcchhHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLP----NVLQTDMVYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~----~Vi~tD~ire~mr 200 (498)
..+|++.|.||+||||+|+.|++.|++. .++..|.+|+.+.
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~ 259 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLE 259 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhc
Confidence 3589999999999999999999998543 2345566666543
No 217
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.21 E-value=0.014 Score=58.93 Aligned_cols=82 Identities=20% Similarity=0.381 Sum_probs=52.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CC--CeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NL--PNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK 236 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl--~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~e 236 (498)
+|+|+|.|+|||||.|..|...| |- .+.+.+|.- .+.. + ...+.. +.. ...+..
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~~-~----ns~y~~---s~~---------EK~lRg 61 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGIE-K----NSNYGD---SQA---------EKALRG 61 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCCC-C----cccccc---cHH---------HHHHHH
Confidence 68999999999999999999887 21 233334432 1111 0 011111 111 122344
Q ss_pred HHHHHHHHHhhCCCcEEEEcccCCcccc
Q 010885 237 GLAGDLKKAMKDGKPIIIEGIHLDPSIY 264 (498)
Q Consensus 237 gL~~~IekaL~eG~sVIVEGthL~P~l~ 264 (498)
.|...+++.|..|..||+|.-+.-.+|.
T Consensus 62 ~L~S~v~R~Lsk~~iVI~DslNyIKGfR 89 (281)
T KOG3062|consen 62 KLRSAVDRSLSKGDIVIVDSLNYIKGFR 89 (281)
T ss_pred HHHHHHHhhcccCcEEEEecccccccce
Confidence 5778888999999999999988655554
No 218
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.21 E-value=0.008 Score=68.14 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.|.-|++.||||||||++|+.+|..+++..+
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi 516 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFI 516 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45778999999999999999999999998765
No 219
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0048 Score=61.04 Aligned_cols=31 Identities=35% Similarity=0.513 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.++|+|.|+-|+||||+|..||+++|...+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~ 34 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFY 34 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceee
Confidence 4689999999999999999999999977653
No 220
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.19 E-value=0.0034 Score=54.25 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 010885 163 ILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
|+|.|+||+|||++|..|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988774
No 221
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.19 E-value=0.0062 Score=54.68 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=26.5
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 150 L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+++++.....+..|+|.|++|+||||+...|...
T Consensus 4 ~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 4 LLRKLRKSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred HHHHhhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 3444445555678999999999999999999753
No 222
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.18 E-value=0.0071 Score=66.51 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
+.|.-|+|.||||||||++|+.+|..++...
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i 244 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQRI 244 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcccc
Confidence 4577899999999999999999999997663
No 223
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.17 E-value=0.0064 Score=64.72 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE--cchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL--QTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi--~tD~ire 197 (498)
....|+|+|++|||||||+..|+..+|...+. ..|.+++
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~ 258 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFS 258 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHH
Confidence 35589999999999999999999999988643 3344444
No 224
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0034 Score=65.92 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
.++|++.||||+|||+++++||++|-++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~ 205 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRT 205 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeee
Confidence 46899999999999999999999998773
No 225
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.16 E-value=0.0069 Score=57.35 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=24.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...+..++|.|++|||||++|+.++..+
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999876
No 226
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.16 E-value=0.0055 Score=62.52 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
.|..++|.|+||+||||+|..+|+.++...
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 456789999999999999999999998764
No 227
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.15 E-value=0.0075 Score=60.46 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=27.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..+.|.+++++|+||+||||+|..+++.++...
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 345678899999999999999999999887543
No 228
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.0066 Score=63.52 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHHhcC-----------CCCCCCCCccccccccChHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELLRTS-----------TDAPLSSSPVWARNFSSSEELVT 225 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i--re~mr~~-----------~~~pLss~~~W~~~f~s~EelI~ 225 (498)
+-.+|+|.|+.|+|||-||-.||.+++...| .+|-+ ++.+.-. .+++|.+.-.| +.+-...
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EII-NsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~-----~~e~t~~ 79 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEII-NSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHP-----EAEYTAG 79 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceee-cccceeeecCcccccccCChhhcCCCChHHhCcCCh-----HhhccHH
Confidence 4569999999999999999999999998854 56653 3332211 11122211111 1233455
Q ss_pred HHhhcchhHHHHHHHHHHHHhhCCCcEEEEcccCCcccc
Q 010885 226 EFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIY 264 (498)
Q Consensus 226 ~f~~q~~~V~egL~~~IekaL~eG~sVIVEGthL~P~l~ 264 (498)
.|...+...++.+.. +..-|||+-|+|+.-...
T Consensus 80 ~F~~~a~~aie~I~~------rgk~PIv~GGs~~yi~al 112 (348)
T KOG1384|consen 80 EFEDDASRAIEEIHS------RGKLPIVVGGSNSYLQAL 112 (348)
T ss_pred HHHHHHHHHHHHHHh------CCCCCEEeCCchhhHHHH
Confidence 665544333333221 456789999999654333
No 229
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.14 E-value=0.0054 Score=56.32 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
...+|++.|..|+||||+++.+++.+|+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34589999999999999999999999976
No 230
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.14 E-value=0.018 Score=66.13 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=27.9
Q ss_pred CCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPL-VILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~-iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+|. .++++||||||||++|+.||+.++.+.+
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 4564 7999999999999999999999987654
No 231
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.13 E-value=0.018 Score=65.48 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=28.0
Q ss_pred cCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 157 QRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 157 ~r~P~-iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.+|. .++++||+|+|||++|+.||+.++...+
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~ 513 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLE 513 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeE
Confidence 34565 6899999999999999999999987643
No 232
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.005 Score=59.07 Aligned_cols=27 Identities=30% Similarity=0.653 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.++.|+|+|+||+||||++..+++.|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 467899999999999999999999888
No 233
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.10 E-value=0.0072 Score=64.10 Aligned_cols=38 Identities=32% Similarity=0.318 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.|.|+|..||||||+++.|++ +|++.+.++...++.+.
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~ 40 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVE 40 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhc
Confidence 689999999999999999987 89998654445555544
No 234
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.10 E-value=0.0056 Score=66.22 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.+.|.-+++.||||||||++|+.||..++++.+.
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 118 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 118 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 3457789999999999999999999999988653
No 235
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.0091 Score=67.63 Aligned_cols=34 Identities=41% Similarity=0.457 Sum_probs=29.4
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
...+.|..+||+|++|+||||+|+.||+.+++..
T Consensus 32 ~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~ 65 (702)
T PRK14960 32 ERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET 65 (702)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3455677899999999999999999999998854
No 236
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.09 E-value=0.0049 Score=64.36 Aligned_cols=28 Identities=46% Similarity=0.559 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|+|.|+|||||||++..||.++|++.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 5899999999999999999999998864
No 237
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.09 E-value=0.0043 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+|+|+|++||||||++..|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378899999999999999998764
No 238
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.0069 Score=64.90 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=58.4
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE--cc-h---hHHHHHhcCCCCCCCCCccccccccChHHH
Q 010885 150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL--QT-D---MVYELLRTSTDAPLSSSPVWARNFSSSEEL 223 (498)
Q Consensus 150 L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi--~t-D---~ire~mr~~~~~pLss~~~W~~~f~s~Eel 223 (498)
..+++-+.....-.++.||||+||||+|+.||...+..+.- ++ + .+|+.+..... .+ ....+..- .-+-
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~-~~---~~gr~tiL-flDE 112 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARK-NR---LLGRRTIL-FLDE 112 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHH-HH---hcCCceEE-EEeh
Confidence 34455555556677899999999999999999999877542 21 1 22322211000 00 00000000 0001
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhCCCcEEEEcccCCcccccc
Q 010885 224 VTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLM 266 (498)
Q Consensus 224 I~~f~~q~~~V~egL~~~IekaL~eG~sVIVEGthL~P~l~~~ 266 (498)
++.|. +.-.+.+-..+..|..+.|-+|==+|.|...
T Consensus 113 IHRfn-------K~QQD~lLp~vE~G~iilIGATTENPsF~ln 148 (436)
T COG2256 113 IHRFN-------KAQQDALLPHVENGTIILIGATTENPSFELN 148 (436)
T ss_pred hhhcC-------hhhhhhhhhhhcCCeEEEEeccCCCCCeeec
Confidence 23332 2334444556788888888888888888874
No 239
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.0098 Score=62.75 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=28.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..++|+||+|+||||+|..+|+.+++.
T Consensus 34 ~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 34 MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999875
No 240
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.04 E-value=0.0066 Score=56.67 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+++|+|+||+||||+|++..|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 46889999999999999999999875
No 241
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.04 E-value=0.01 Score=67.27 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|.-|+|+|+|||||||+|+.+|..++...+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i 241 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFI 241 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEE
Confidence 45778999999999999999999999987764
No 242
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.01 Score=63.74 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=29.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.+.|..+|+.||||||||++|+++|..++.+++.
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 3567799999999999999999999988888753
No 243
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.00 E-value=0.009 Score=59.58 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCe-EEcchhHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPN-VLQTDMVYELLRT 201 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~-Vi~tD~ire~mr~ 201 (498)
++|.++|.|||||||+|+.+.+ .|..+ +..+|.+|+.++-
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~l~~ 41 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEILAI 41 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHHHHH
Confidence 4899999999999999999865 56665 7889999987763
No 244
>PRK06620 hypothetical protein; Validated
Probab=96.00 E-value=0.027 Score=54.88 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..++|+|++|||||++++.++...+..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~ 72 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI 72 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE
Confidence 4689999999999999999998887643
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.99 E-value=0.0053 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...+++|.|++|+|||+++..++..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999987
No 246
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.99 E-value=0.0078 Score=60.28 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.++|.|+||+||||+|+.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999884
No 247
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.0092 Score=65.26 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=28.4
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
...+.|..++|+|++|+||||+|+.||+.+++.
T Consensus 35 ~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 35 KSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 334556789999999999999999999999875
No 248
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.95 E-value=0.0065 Score=55.01 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=19.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...|.+++|.|++|+|||++.+.+..++
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999999888776
No 249
>PHA02244 ATPase-like protein
Probab=95.95 E-value=0.013 Score=62.49 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=31.2
Q ss_pred HHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 010885 152 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193 (498)
Q Consensus 152 ~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD 193 (498)
.++...+.| |+|.|+||||||++|+.||..+|.+++...+
T Consensus 113 ~r~l~~~~P--VLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 113 AKIVNANIP--VFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred HHHHhcCCC--EEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 344444445 6789999999999999999999999775443
No 250
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.93 E-value=0.063 Score=61.96 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=57.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhc-Cc--------------------ccccHHHHHHHHHHHHHhcCCChhhHHH
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDN-SL--------------------LDVSQSDLEANLFKLMERRGYGEEYISR 147 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~-~v--------------------~~I~q~eLe~~V~~lL~~~~yge~~a~r 147 (498)
+..-+..++++.++..++-.++.+.-.-. .- ..-..-+| ....+.|.+..||.+....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~-~~~~~~l~~~~~g~~~vK~ 332 (784)
T PRK10787 254 LKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDL-RQAQEILDTDHYGLERVKD 332 (784)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccH-HHHHHHhhhhccCHHHHHH
Confidence 44556778888888888888877642211 00 01111112 2234555554566432222
Q ss_pred -H---HHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 148 -Y---RMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 148 -Y---~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
. .-...........++++.||||+||||+++.+|..+|.+.+
T Consensus 333 ~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 333 RILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred HHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 2 11111111223447999999999999999999999998764
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.90 E-value=0.0058 Score=53.31 Aligned_cols=23 Identities=48% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++|.|+||+||||++..++..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 252
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.013 Score=64.30 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=28.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..+.|..+|++|++|+||||+|+.||+.+++..
T Consensus 34 ~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (509)
T PRK14958 34 QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEK 66 (509)
T ss_pred hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 345677899999999999999999999998763
No 253
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.89 E-value=0.017 Score=60.40 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=29.2
Q ss_pred HHHHHhhc-cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 149 RMMTRFHH-QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 149 ~L~~~~~~-~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++.++.. ...|.+|.|+|+||+||||++..|...+
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35555543 5679999999999999999999987766
No 254
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.013 Score=64.29 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=27.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..++|+|+||+||||+|+.+|+.+.+.
T Consensus 32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34567789999999999999999999999753
No 255
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.87 E-value=0.01 Score=61.01 Aligned_cols=39 Identities=31% Similarity=0.517 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE--cchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL--QTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi--~tD~ire 197 (498)
.|..||+.||||+|||.+|++||.+.+.+.+. ++..+-+
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 58999999999999999999999999988654 4444433
No 256
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.86 E-value=0.011 Score=57.94 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+..++|+|++|||||+++..++..+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998764
No 257
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.013 Score=68.28 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=28.5
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..+||+|++|+||||+|+.||+.+++.
T Consensus 34 ~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 34 QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34567789999999999999999999999876
No 258
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.013 Score=64.18 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=28.6
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
...+.|..++++|++|+||||+|+.+|+.+++.
T Consensus 30 ~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 30 TLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 345567789999999999999999999999775
No 259
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.82 E-value=0.014 Score=61.64 Aligned_cols=95 Identities=24% Similarity=0.344 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHH---HH----HHHH---HHHHhcCCC-hhhHHHHHHHHHhhc-
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSD---LE----ANLF---KLMERRGYG-EEYISRYRMMTRFHH- 156 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~e---Le----~~V~---~lL~~~~yg-e~~a~rY~L~~~~~~- 156 (498)
|+.+|..+.-.|..|.-...++-.++...++..|...+ +. +... ......-|| ++.+.+ ++..|+.
T Consensus 3 ~~eYL~~~~~~p~~~~~A~~r~~~~I~~~G~~~i~~~~~~~~~rif~~~~~~~y~~f~~~~~G~~~~i~~--lV~~fk~A 80 (358)
T PF08298_consen 3 FAEYLELVKEDPSVAANAHQRLYDMIGEPGTEVIDTSEDPRLYRIFSNDTIKRYPFFEDEFYGMEETIER--LVNYFKSA 80 (358)
T ss_pred HHHHHHHHHhCcHhhhhHHHHHHHHHhccCcEEEeccccceEEEecccccccccCCccccccCcHHHHHH--HHHHHHHH
Confidence 56788888888999999999999888877663322111 00 0000 001101122 111111 2222222
Q ss_pred ----cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 157 ----QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 157 ----~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+-+|+++.||.|+||||+++.|.+.|.
T Consensus 81 A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 81 AQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred HhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 22456999999999999999999998774
No 260
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.82 E-value=0.0096 Score=66.85 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
+.+.+|.|+|+|||||||+|+.|+..+....++.-|.+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 35789999999999999999999998854334555544
No 261
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=95.80 E-value=0.05 Score=53.97 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh-HHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM-VYELL 199 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~-ire~m 199 (498)
.++-++|..||||||+++.+. ++|++.|. .|. .|+..
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vID-aD~vaR~vv 39 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVID-ADVVAREVV 39 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEec-HHHHHHHHh
Confidence 478899999999999999996 89999764 555 45554
No 262
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.79 E-value=0.0081 Score=57.33 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+|+|+|++||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999887774
No 263
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.011 Score=64.84 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=29.4
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
...+.|..++++|++|+||||+|+.+|+.+++..
T Consensus 38 ~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 38 LNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred HcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3445677899999999999999999999998764
No 264
>PRK08116 hypothetical protein; Validated
Probab=95.78 E-value=0.041 Score=55.39 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE--cchhHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVL--QTDMVYE 197 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi--~tD~ire 197 (498)
+.-++|.|++|+|||.||..++..+ |.+.+. ..|.+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 4468999999999999999999986 555332 3344444
No 265
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.015 Score=65.21 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=29.5
Q ss_pred HhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 153 RFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 153 ~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.+...+.|..+||.||+|+||||+|..+|+.+.+.
T Consensus 31 aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 31 AILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 33445667789999999999999999999999764
No 266
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.76 E-value=0.022 Score=58.42 Aligned_cols=30 Identities=40% Similarity=0.581 Sum_probs=26.9
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...+.|.+|-|+|++|+||||+|+.|+..+
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 345679999999999999999999999877
No 267
>PLN02796 D-glycerate 3-kinase
Probab=95.74 E-value=0.0095 Score=62.71 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..|.+|.|+|++||||||+++.|+..+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4789999999999999999999998874
No 268
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.74 E-value=0.0062 Score=62.33 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC---C-CeEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN---L-PNVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg---l-~~Vi~tD~ire 197 (498)
+|.|+|.|||||||++..|++.++ . ..++..|.++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 588999999999999999998773 3 23566776654
No 269
>PRK13974 thymidylate kinase; Provisional
Probab=95.74 E-value=0.053 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+|.|.|++||||||+++.|++.+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999884
No 270
>PLN03025 replication factor C subunit; Provisional
Probab=95.73 E-value=0.011 Score=60.25 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.| .+++.||||+||||+|..+|+.+.
T Consensus 34 ~~-~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 34 MP-NLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred Cc-eEEEECCCCCCHHHHHHHHHHHHh
Confidence 34 478899999999999999999884
No 271
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.73 E-value=0.026 Score=53.09 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
||.|.|..|||++++|..||++||++++. .+.+.+..+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d-~~ii~~~a~ 38 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYD-REIIEEAAK 38 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE--HHHHHHCT-
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCC-HHHHHHHHH
Confidence 68999999999999999999999999874 477776544
No 272
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.72 E-value=0.022 Score=53.57 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
...++|+|++||||||+.+.|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45899999999999999999987663
No 273
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.019 Score=64.49 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
..|.=||++||||||||.+|++.|.+-|+.++.
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis 575 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS 575 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence 458889999999999999999999999988764
No 274
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.71 E-value=0.01 Score=57.75 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+.+++|.|++|+||||+++.++..+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 355789999999999999999999876
No 275
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.018 Score=63.44 Aligned_cols=32 Identities=44% Similarity=0.529 Sum_probs=27.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..++|+|++|+||||+|+.+|+.+++.
T Consensus 34 ~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 34 QQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999874
No 276
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.013 Score=64.86 Aligned_cols=33 Identities=39% Similarity=0.461 Sum_probs=28.2
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
...+.|..++|+|++|+||||+|+.||+.+++.
T Consensus 33 ~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 33 ETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 334567789999999999999999999999874
No 277
>CHL00176 ftsH cell division protein; Validated
Probab=95.68 E-value=0.014 Score=65.81 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|.-+++.|+||+|||++|+.+|...+.+.+.
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~ 246 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS 246 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 457789999999999999999999999988753
No 278
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.67 E-value=0.012 Score=55.59 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
..++++||+|+|||.+|+.||+.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999985
No 279
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.66 E-value=0.011 Score=65.47 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
...+++|+||+||||||+.+.|++.+|+..+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4569999999999999999999999998753
No 280
>PRK12377 putative replication protein; Provisional
Probab=95.65 E-value=0.02 Score=57.38 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...++|.|+||+|||++|.+++..+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999988
No 281
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.64 E-value=0.0076 Score=63.15 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+++++|+||+||||+++.|+..|+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999997774
No 282
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.025 Score=60.76 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=35.3
Q ss_pred HHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 148 YRMMTRFHHQRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 148 Y~L~~~~~~~r~P~-iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|...|..-++|. =||++||||+|||.||+++|.+.|..+.
T Consensus 232 i~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFF 274 (491)
T KOG0738|consen 232 IWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFF 274 (491)
T ss_pred hhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEE
Confidence 44566777788885 6999999999999999999999996654
No 283
>PRK13976 thymidylate kinase; Provisional
Probab=95.63 E-value=0.065 Score=52.18 Aligned_cols=54 Identities=6% Similarity=0.026 Sum_probs=34.5
Q ss_pred hHHHHHhHHHHHHHhhhcccCCceEEEecCCCccch---HHHHHHHHHHHHHhhhcccc
Q 010885 408 KDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQT---LDWLHGYLLQVYLFYIQCRV 463 (498)
Q Consensus 408 ~~~~i~nl~tIQdYLc~~~~q~~~vv~i~~~~~~~t---ld~lH~~ll~~i~~~~~~~~ 463 (498)
...++++++..=..|.. ..+...+-|+++.-.++ ++-+|..+++.|........
T Consensus 151 ~~~~l~~v~~~Y~~l~~--~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~~ 207 (209)
T PRK13976 151 DLEFYDKVRKGFREIVI--KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDKL 207 (209)
T ss_pred cHHHHHHHHHHHHHHHH--hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 35777766655444443 23444566666543456 99999999999987765443
No 284
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.61 E-value=0.017 Score=65.16 Aligned_cols=33 Identities=42% Similarity=0.487 Sum_probs=28.4
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 154 ~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
+...+.|..+||+|++|+||||+|+.||+.+++
T Consensus 32 l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 32 LDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 334456778999999999999999999999977
No 285
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.60 E-value=0.034 Score=57.87 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 124 QSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 124 q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~-~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..|...|. +++. ....+.+..+.++..+. +..++.+|=|+|+||+||||+...|..+|
T Consensus 16 rrAlARaIT-lvEs-~~~~h~~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 16 RRALARAIT-LVES-RRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHH-HHhc-CCchhhhHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 344444444 3333 33332233455555553 46688899999999999999999999888
No 286
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.58 E-value=0.012 Score=55.06 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM 194 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ 194 (498)
.-++|+|+||+||||+|..|.+ .|... +++|.
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~-~g~~l-vaDD~ 46 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIK-RGHRL-VADDR 46 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeE-EECCE
Confidence 4689999999999999999876 47664 46664
No 287
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.54 E-value=0.013 Score=60.50 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
..|+|.|+||+||||++..|+..+|.+.+-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 378999999999999999999999998753
No 288
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.53 E-value=0.052 Score=50.40 Aligned_cols=78 Identities=28% Similarity=0.317 Sum_probs=43.6
Q ss_pred EEcCCCCcHHHHHHHHHHhc---CCCeEE----c----chhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchh
Q 010885 165 VCGTACVGKSTIATQLAQRL---NLPNVL----Q----TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (498)
Q Consensus 165 I~G~pGSGKSTlA~~LA~~L---gl~~Vi----~----tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~ 233 (498)
|=|..||||||+++.|+++| |...+. . .+.+|+.+.... .+ ++.....-|.. .
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~--~~-----------~~~~~~~l~~a---~ 64 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSES--EL-----------SPEAEALLFAA---D 64 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSS--TC-----------GHHHHHHHHHH---H
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhccc--CC-----------CHHHHHHHHHH---H
Confidence 45999999999999999998 443222 1 133444443110 00 11111112211 1
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEccc
Q 010885 234 VRKGLAGDLKKAMKDGKPIIIEGIH 258 (498)
Q Consensus 234 V~egL~~~IekaL~eG~sVIVEGth 258 (498)
....+...+..++.+|..||.|--.
T Consensus 65 r~~~~~~~I~~~l~~g~~VI~DRy~ 89 (186)
T PF02223_consen 65 RAWHLARVIRPALKRGKIVICDRYI 89 (186)
T ss_dssp HHHHHHHTHHHHHHTTSEEEEESEH
T ss_pred HHHHHHHHHHHHHcCCCEEEEechh
Confidence 1123445667788999999998744
No 289
>PRK06526 transposase; Provisional
Probab=95.53 E-value=0.026 Score=56.60 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+..++|+|+||+|||++|..|+..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 45578999999999999999998765
No 290
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.52 E-value=0.012 Score=54.04 Aligned_cols=35 Identities=37% Similarity=0.431 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ir 196 (498)
++++.|+||+||||++..|+..+ |... ++..|..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68999999999999999998876 5543 45667554
No 291
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.016 Score=56.51 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
+..+++|.||||+||||+.+.|-+..++..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~ 32 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRF 32 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEE
Confidence 567999999999999999999988886664
No 292
>PF13245 AAA_19: Part of AAA domain
Probab=95.49 E-value=0.014 Score=48.30 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=17.6
Q ss_pred CeEEEEEcCCCCcHHH-HHHHHHHhc
Q 010885 160 PLVILVCGTACVGKST-IATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKST-lA~~LA~~L 184 (498)
+.+.+|.|+||||||+ ++..++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467889999999994 444444444
No 293
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.023 Score=63.54 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=28.8
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
...+.|..++|+|++|+||||+|+.||+.+++.
T Consensus 30 ~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 30 DAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 344667789999999999999999999999875
No 294
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.46 E-value=0.021 Score=57.92 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..++++|+||+||||+|..+++.+.+.
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567789999999999999999999998765
No 295
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.45 E-value=0.012 Score=55.46 Aligned_cols=26 Identities=35% Similarity=0.655 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCC
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NLP 187 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl~ 187 (498)
.|+|+|.||+||||+...+.+.+ |++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 37999999999999999999998 554
No 296
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.44 E-value=0.012 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=18.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+.+|.||||+||||++..+...+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 3378999999999998877777665
No 297
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.024 Score=63.79 Aligned_cols=32 Identities=41% Similarity=0.522 Sum_probs=28.4
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..+||+|++|+||||+|+.||+.+++.
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999874
No 298
>PF13173 AAA_14: AAA domain
Probab=95.42 E-value=0.024 Score=50.03 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+++|.|+.||||||++..+++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998875
No 299
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.42 E-value=0.014 Score=55.79 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
++.++.|+|++||||||++..|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 455899999999999999999997773
No 300
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.025 Score=63.64 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=30.0
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 154 ~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
++..+.|--+||+|++|+||||+|..||+.+++..
T Consensus 32 i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 32 LRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred HHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 34456677899999999999999999999999853
No 301
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.40 E-value=0.018 Score=45.78 Aligned_cols=31 Identities=42% Similarity=0.535 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeEEcc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NLPNVLQT 192 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi~t 192 (498)
+++++|.+|+||||++..|+..+ |.+.+..+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 47889999999999999999988 66654433
No 302
>PTZ00202 tuzin; Provisional
Probab=95.39 E-value=0.13 Score=56.47 Aligned_cols=43 Identities=19% Similarity=0.442 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE-----cchhHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL-----QTDMVYELLRT 201 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi-----~tD~ire~mr~ 201 (498)
.|.+++|.|++||||||+++.+...++...++ ..|.++..++.
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~A 332 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKA 332 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHH
Confidence 46799999999999999999999988855432 23455555544
No 303
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.016 Score=60.97 Aligned_cols=29 Identities=38% Similarity=0.558 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.|++.||+|||||.||+.||+.|+.++.+
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 69999999999999999999999999865
No 304
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.022 Score=56.45 Aligned_cols=32 Identities=41% Similarity=0.533 Sum_probs=27.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
.+.|..+++.||||+||||+|..||+.+++..
T Consensus 21 ~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 21 GRLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 35677899999999999999999999997554
No 305
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.34 E-value=0.01 Score=54.65 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCe--EEc-chhHHHHHhc
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNLPN--VLQ-TDMVYELLRT 201 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl~~--Vi~-tD~ire~mr~ 201 (498)
|||-|+||+||||+|+.||..+|..+ |-. .|..-.-+.+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G 43 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG 43 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccccee
Confidence 78999999999999999999998764 322 3655554444
No 306
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.022 Score=60.49 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=29.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+.|.-|++.||||||||.+|.++|++.|..++
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fI 156 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFI 156 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcc
Confidence 357889999999999999999999999987764
No 307
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.035 Score=57.60 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..-.+++.||||-||||+|.-+|.++|...
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 345799999999999999999999998774
No 308
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.024 Score=64.90 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=30.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.+.|+=+|++||||||||.||+++|.+-|++++.
T Consensus 341 AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~s 374 (774)
T KOG0731|consen 341 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 374 (774)
T ss_pred CcCcCceEEECCCCCcHHHHHHHHhcccCCceee
Confidence 3568889999999999999999999999999875
No 309
>PF13479 AAA_24: AAA domain
Probab=95.31 E-value=0.016 Score=55.94 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQL 180 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~L 180 (498)
+|..++|.|+||+||||+|..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5788999999999999999977
No 310
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.024 Score=58.57 Aligned_cols=32 Identities=38% Similarity=0.679 Sum_probs=27.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..++|+|++|+||||+|..+++.++..
T Consensus 35 ~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~ 66 (367)
T PRK14970 35 NNHLAQALLFCGPRGVGKTTCARILARKINQP 66 (367)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567789999999999999999999998764
No 311
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.29 E-value=0.015 Score=58.83 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+|.|+|++||||||+++.|+..++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 478999999999999999998874
No 312
>COG4240 Predicted kinase [General function prediction only]
Probab=95.27 E-value=0.019 Score=58.19 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=25.0
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..+|.++.|+||.||||||+|..|-..|
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L 74 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLL 74 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHH
Confidence 45679999999999999999999876655
No 313
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.25 E-value=0.018 Score=62.51 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+|.+|-|.|++||||||++..|...+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999998766
No 314
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.25 E-value=0.027 Score=52.63 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=28.6
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 154 ~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+...+.|..++|.|++|+||||+|..+++.+...
T Consensus 8 i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 8 LEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3445567899999999999999999999998654
No 315
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.25 E-value=0.014 Score=55.85 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC-CCeEEcchhH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN-LPNVLQTDMV 195 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg-l~~Vi~tD~i 195 (498)
+|+=.+++||||||+|..|+.-+| +.+| +.|.+
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHv-QnDnI 34 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHV-QNDNI 34 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCcc-ccCCC
Confidence 356678999999999999999999 9996 55555
No 316
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.24 E-value=0.12 Score=53.26 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE--EcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNV--LQTDMVYEL 198 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V--i~tD~ire~ 198 (498)
.+.-++|.|++|+|||.++.++|..+ |.+.+ ...+.+++.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 34579999999999999999999988 55532 334555443
No 317
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.03 Score=63.57 Aligned_cols=32 Identities=41% Similarity=0.522 Sum_probs=28.4
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..+||+|++|+||||+|+.|++.|++.
T Consensus 34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999884
No 318
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.24 E-value=0.03 Score=62.72 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=29.3
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
...+.|.-+||+|++|+||||+|+.||+.+++..
T Consensus 41 ~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 41 ETGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred HcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3445677899999999999999999999998764
No 319
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.22 E-value=0.079 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..++|.|++|+|||.||..+|..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999987
No 320
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.21 E-value=0.024 Score=54.42 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+..++|+|++|+|||++|..++..+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999876
No 321
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.025 Score=59.20 Aligned_cols=52 Identities=29% Similarity=0.381 Sum_probs=40.9
Q ss_pred HHHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCe--EEcchhHHHHH
Q 010885 148 YRMMTRFHHQRVPL-VILVCGTACVGKSTIATQLAQRLNLPN--VLQTDMVYELL 199 (498)
Q Consensus 148 Y~L~~~~~~~r~P~-iIlI~G~pGSGKSTlA~~LA~~Lgl~~--Vi~tD~ire~m 199 (498)
.++..-|...|+|. -||+.||||+|||.||.+.|-+-|-.+ |.++|.+-+-|
T Consensus 153 IKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 153 IKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred ccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 34555677788884 699999999999999999999998544 45778876644
No 322
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.16 E-value=0.025 Score=64.36 Aligned_cols=33 Identities=45% Similarity=0.535 Sum_probs=28.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..+.|..+||+|++|+||||+|+.||+.+++..
T Consensus 34 ~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~ 66 (709)
T PRK08691 34 EGRLHHAYLLTGTRGVGKTTIARILAKSLNCEN 66 (709)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccC
Confidence 345677899999999999999999999998764
No 323
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.16 E-value=0.018 Score=65.61 Aligned_cols=29 Identities=31% Similarity=0.622 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+.|+|||||-||||+|.-+|+.-|+.+|
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVv 355 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVV 355 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEE
Confidence 69999999999999999999999999875
No 324
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.16 E-value=0.016 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++|.|+||+|||+++..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999887643
No 325
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.16 E-value=0.018 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.|++.|.+|+|||||.+.|.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 379999999999999999986553
No 326
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.018 Score=61.13 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=33.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE--EcchhHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV--LQTDMVYE 197 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V--i~tD~ire 197 (498)
..|.=||+.||||+|||.+|++.|.+.++.++ ..++.+.+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 46788999999999999999999999997754 45555554
No 327
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.15 E-value=0.032 Score=56.87 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...|..++|.|+||+|||++++.+.+.+
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3466789999999999999999998765
No 328
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.14 E-value=0.026 Score=64.56 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..+...++|.|+||+||||+|+.+++.++..+
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 34444678999999999999999999887654
No 329
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.12 E-value=0.072 Score=53.34 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+++.|+||+|||+++..++..+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999988
No 330
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.018 Score=56.95 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+-.+|-|.|.++|||||||..|...++-..+++-|.+++
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK 41 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK 41 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence 346889999999999999999999885444566666554
No 331
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.09 E-value=0.026 Score=55.13 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+...+|.|.|++|+||||+|..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45679999999999999999999977
No 332
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.08 E-value=0.038 Score=60.38 Aligned_cols=33 Identities=39% Similarity=0.434 Sum_probs=28.2
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 155 ~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
...+.+..++|+|++|+||||+|+.+|+.+++.
T Consensus 33 ~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 33 KLQRVSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 334557788999999999999999999999874
No 333
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.05 E-value=0.025 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA 181 (498)
.++.|.|+|||||||++..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 589999999999999999987
No 334
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=95.05 E-value=0.021 Score=55.23 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+|.|-|.-||||||+++.|+++++...+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4889999999999999999999987643
No 335
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.039 Score=62.93 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=40.7
Q ss_pred HHHHhcCCChh----hHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 133 KLMERRGYGEE----YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 133 ~lL~~~~yge~----~a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
++|.+..||-. -+-.|..+++++..-.-.|+.+.||||+|||++|+.+|..||-.+
T Consensus 407 ~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 407 EILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred HhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 34555455522 133344466666666778999999999999999999999998654
No 336
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.05 E-value=0.02 Score=59.91 Aligned_cols=28 Identities=39% Similarity=0.631 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+|.+|.|+|.+||||||++..|..+|.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998885
No 337
>PRK09183 transposase/IS protein; Provisional
Probab=95.04 E-value=0.036 Score=55.46 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...++|.|+||+|||++|..|+..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999997654
No 338
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.03 E-value=0.07 Score=61.58 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=24.9
Q ss_pred ccCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 156 HQRVPL-VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 156 ~~r~P~-iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+.+|. .++++||+|+|||++|..||+.+
T Consensus 534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 534 NPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 345675 57899999999999999999987
No 339
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.04 Score=61.09 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=28.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
.+.|..+|++|++|+||||+|+.||+.+++..
T Consensus 35 ~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 35 GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 45677899999999999999999999997653
No 340
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.01 E-value=0.041 Score=57.70 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=30.8
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 150 L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
|...+...+.|..++|.|++|+||+|+|..+|+.+.+
T Consensus 35 L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 35 LAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3344455667889999999999999999999999976
No 341
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.036 Score=63.45 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=29.7
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 154 ~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
+...+.|..+|++||+|+||||+|+.||+.+++..
T Consensus 34 I~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~ 68 (725)
T PRK07133 34 IKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSH 68 (725)
T ss_pred HHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccc
Confidence 33445677899999999999999999999998864
No 342
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.039 Score=61.31 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=27.7
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.+..+||+|++|+||||+|+.||+.+++.
T Consensus 34 ~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 34 EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34557789999999999999999999999864
No 343
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.99 E-value=0.018 Score=50.38 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|+|++||||||+.+.|+..+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3589999999999999999998665
No 344
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.98 E-value=0.027 Score=57.64 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..+|+|+|++||||||+++.|. .+|+..+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~ 34 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE-DLGYYCV 34 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HcCCeEE
Confidence 4589999999999999999996 5687654
No 345
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.19 Score=49.35 Aligned_cols=85 Identities=27% Similarity=0.330 Sum_probs=51.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE--------cchhHHHHHhcCCCCCCCCCccccccccChHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL--------QTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF 227 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi--------~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f 227 (498)
+.+.|.|=|.=||||||.+..|++.| |+..+. ..+.+|+.+.... ..+ ++.....-|
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~-----------~~~-~~~~e~lLf 69 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGE-----------EKL-SPKAEALLF 69 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCc-----------cCC-CHHHHHHHH
Confidence 46789999999999999999999988 555443 1234444332110 001 111111222
Q ss_pred hhcchhHHHHHHHHHHHHhhCCCcEEEEccc
Q 010885 228 VRECRIVRKGLAGDLKKAMKDGKPIIIEGIH 258 (498)
Q Consensus 228 ~~q~~~V~egL~~~IekaL~eG~sVIVEGth 258 (498)
.. --.+.+...+..++.+|..||.|-..
T Consensus 70 aa---dR~~h~~~~i~pal~~g~vVI~DRy~ 97 (208)
T COG0125 70 AA---DRAQHLEEVIKPALKEGKVVICDRYV 97 (208)
T ss_pred HH---HHHHHHHHHHHHhhcCCCEEEECCcc
Confidence 11 11234677778888999888877644
No 346
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.96 E-value=0.022 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+|.|+|+.+|||||+++.|..+|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998877
No 347
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.95 E-value=0.041 Score=63.44 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=28.5
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..+.+..+||+|++|+||||+|+.|++.|++..
T Consensus 34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~ 66 (830)
T PRK07003 34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCET 66 (830)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 345577889999999999999999999998753
No 348
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.94 E-value=0.061 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
..|+|+|++||||||+...|...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998764
No 349
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.94 E-value=0.041 Score=56.79 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...|..++|.|+||+|||++++.++..+
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999876
No 350
>PRK13768 GTPase; Provisional
Probab=94.94 E-value=0.023 Score=56.54 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++++|++.|++|+||||++..++..+
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHH
Confidence 36799999999999999999888766
No 351
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.91 E-value=0.047 Score=58.20 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.|.-++|.||+|+||||+|..+|..+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 57789999999999999999999998775
No 352
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.051 Score=60.46 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=31.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQT 192 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~t 192 (498)
.+-|.=||++||||+|||.||+++|-+-|++++..+
T Consensus 334 GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s 369 (752)
T KOG0734|consen 334 GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS 369 (752)
T ss_pred CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence 356888999999999999999999999999987644
No 353
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.87 E-value=0.027 Score=53.57 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+..+++|+|+|||||||++..++...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998765
No 354
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.87 E-value=0.072 Score=61.95 Aligned_cols=28 Identities=46% Similarity=0.657 Sum_probs=25.2
Q ss_pred cCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPL-VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~-iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++|. +++++||+|+|||.+|+.||+.+
T Consensus 592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45676 68999999999999999999988
No 355
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.87 E-value=0.019 Score=62.72 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.=|||+|+||+||||+|++||+-+
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHH
Confidence 358999999999999999999987
No 356
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.86 E-value=0.083 Score=52.95 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE--cchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL--QTDMVYEL 198 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi--~tD~ire~ 198 (498)
++.-+++.|+||+|||.+|.+++.++ |++.+. ..|.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 56689999999999999999999987 555433 44666664
No 357
>PRK13695 putative NTPase; Provisional
Probab=94.82 E-value=0.025 Score=52.23 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.|+|.|++|+||||++..++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999987765
No 358
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.81 E-value=0.027 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
...|.+.|++|+||||+...|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999864
No 359
>PRK06893 DNA replication initiation factor; Validated
Probab=94.78 E-value=0.025 Score=55.20 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++|+|+||+|||+++..++..+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 360
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.77 E-value=0.031 Score=53.84 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
|..|.|+|++||||||+.+.+...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999999999998875
No 361
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.76 E-value=0.035 Score=50.45 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
+...+|++.|.-|+||||+++.+++.+|+.-
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 3456999999999999999999999998763
No 362
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=94.76 E-value=0.024 Score=51.69 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.|-+.+|+|++|+||||+..+|...|+-.
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46799999999999999999998777443
No 363
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.73 E-value=0.053 Score=60.31 Aligned_cols=32 Identities=38% Similarity=0.454 Sum_probs=27.7
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..+||+|++|+||||+|..||+.+++.
T Consensus 34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 34 TGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 34567789999999999999999999998753
No 364
>PRK05973 replicative DNA helicase; Provisional
Probab=94.71 E-value=0.15 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-.+++|+|.||+|||+++..++...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999887644
No 365
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.70 E-value=0.093 Score=61.07 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=24.4
Q ss_pred cCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPL-VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~-iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++|. .++|+|++|+|||++|+.|+..+
T Consensus 594 ~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 594 PNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34564 78999999999999999999877
No 366
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.69 E-value=0.038 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.++|.|++|+||||+++.++..+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 469999999999999999999874
No 367
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.66 E-value=0.031 Score=57.23 Aligned_cols=27 Identities=41% Similarity=0.584 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
.+++-|+||+|||++|+.+|+.+|.+.
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 479999999999999999999998664
No 368
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.66 E-value=0.049 Score=63.21 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=28.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.+..+||.|++|+||||+|+.||+.|+|.
T Consensus 33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 33 SGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 34567789999999999999999999999875
No 369
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.66 E-value=0.028 Score=60.34 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC----C--CeEEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN----L--PNVLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg----l--~~Vi~tD~ire 197 (498)
...+|.++||.|+||||+...||.++. - .-++.+|.+|=
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 377999999999999999999999885 1 12467888873
No 370
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.64 E-value=0.043 Score=61.08 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=29.1
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 154 ~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+...+.|..++|+|++|+||||+|+.||+.+++.
T Consensus 32 i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 32 IESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 3344567789999999999999999999999875
No 371
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.63 E-value=0.037 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..+++|+|+||||||+++..++...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998654
No 372
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.61 E-value=0.026 Score=56.48 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
--++.|+|||||||||+.+.|..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 44899999999999999999853
No 373
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.58 E-value=0.04 Score=52.60 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..|.+|.++|++|+||||+...|..+++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999988764
No 374
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.58 E-value=0.047 Score=52.62 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+|...++.|++||||||+...+-..+ +...++.+|.+-..+. | |... ...+ +|.. .
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~-----p------~~p~-------~~~i--~A~r---~ 57 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQIS-----P------DNPT-------SAAI--QAAR---V 57 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcC-----C------CCch-------HHHH--HHHH---H
Confidence 46788999999999999976554433 4444567888776421 1 1110 0111 1111 2
Q ss_pred HHHHHHHHhhCCCcEEEEcccCCcccccc
Q 010885 238 LAGDLKKAMKDGKPIIIEGIHLDPSIYLM 266 (498)
Q Consensus 238 L~~~IekaL~eG~sVIVEGthL~P~l~~~ 266 (498)
..+.+..+++.|.+.+.|.+.--|.+...
T Consensus 58 ai~~i~~~I~~~~~F~~ETtLS~~s~~~~ 86 (187)
T COG4185 58 AIDRIARLIDLGRPFIAETTLSGPSILEL 86 (187)
T ss_pred HHHHHHHHHHcCCCcceEEeeccchHHHH
Confidence 34456667899999999999877777653
No 375
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.50 E-value=0.038 Score=46.77 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..|++.|.+|+||||+...|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987543
No 376
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.45 E-value=0.033 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999998654
No 377
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.43 E-value=0.03 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+|.|+|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 378
>PRK04296 thymidine kinase; Provisional
Probab=94.39 E-value=0.038 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+++++|++|+||||++..++.++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999887
No 379
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.035 Score=52.54 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998644
No 380
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.38 E-value=0.035 Score=52.48 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 381
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.38 E-value=0.046 Score=49.61 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...+..|++.|++|+||||+...|...
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccC
Confidence 344567899999999999999988753
No 382
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.37 E-value=0.056 Score=58.41 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=28.0
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.|..++++|++|+||||+|..+|+.+.+.
T Consensus 35 ~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 35 FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999765
No 383
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.37 E-value=0.069 Score=57.11 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC--CCeE
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN--LPNV 189 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg--l~~V 189 (498)
-+.|||+||||+|||.+|-.+|+.|| .|++
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 56899999999999999999999998 5554
No 384
>PRK08181 transposase; Validated
Probab=94.36 E-value=0.097 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...++|+|+||+|||.+|..++..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH
Confidence 3469999999999999999998754
No 385
>PRK06921 hypothetical protein; Provisional
Probab=94.35 E-value=0.13 Score=51.80 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...++|.|++|+|||.|+.+++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 386
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.35 E-value=0.085 Score=54.74 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+.+.+++|.||+|||||...|.-...
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~ 189 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELN 189 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhh
Confidence 345899999999999999999976444
No 387
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.068 Score=60.31 Aligned_cols=31 Identities=45% Similarity=0.533 Sum_probs=27.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.+.+..+||.|++|+||||+|+.||+.+++.
T Consensus 35 ~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 35 NRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 3456789999999999999999999999875
No 388
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.31 E-value=0.036 Score=53.53 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999998544
No 389
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.30 E-value=0.086 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+|+|+|++||||||+...|...+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 799999999999999998876663
No 390
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.29 E-value=0.043 Score=55.77 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 150 MMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 150 L~~~~~-~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++..+. ....+.+|.|.|+||+||||++..|+..+
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444443 23457899999999999999999998766
No 391
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.28 E-value=0.078 Score=55.93 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=30.1
Q ss_pred HHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 152 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 152 ~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.+.+.|.-++|.|++|+||+|+|..+|+.+-+.
T Consensus 33 ~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 33 DAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred HHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 334456678899999999999999999999999654
No 392
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.037 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+++.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999998544
No 393
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.27 E-value=0.037 Score=52.58 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 394
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.27 E-value=0.044 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+|.|+|++||||||++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999887
No 395
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.26 E-value=0.065 Score=49.18 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.++..|+|.|++||||||+...|..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456779999999999999999864
No 396
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.25 E-value=0.038 Score=52.32 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998644
No 397
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.25 E-value=0.037 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 398
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.13 Score=57.48 Aligned_cols=69 Identities=23% Similarity=0.421 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHHhcCCChhhHHHH--------------------HHHHHhhccC-CC-eEEEEEcCCCCcHHHHHH
Q 010885 121 DVSQSDLEANLFKLMERRGYGEEYISRY--------------------RMMTRFHHQR-VP-LVILVCGTACVGKSTIAT 178 (498)
Q Consensus 121 ~I~q~eLe~~V~~lL~~~~yge~~a~rY--------------------~L~~~~~~~r-~P-~iIlI~G~pGSGKSTlA~ 178 (498)
.|+++++-.++.++=..+|..++-..+| .++++.+.+. .| .-+++.||||||||+||.
T Consensus 477 kV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA 556 (744)
T KOG0741|consen 477 KVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA 556 (744)
T ss_pred eecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH
Confidence 6777777666665444444433323333 2344554433 34 469999999999999999
Q ss_pred HHHHhcCCCeE
Q 010885 179 QLAQRLNLPNV 189 (498)
Q Consensus 179 ~LA~~Lgl~~V 189 (498)
.+|..-++++|
T Consensus 557 ~iA~~S~FPFv 567 (744)
T KOG0741|consen 557 KIALSSDFPFV 567 (744)
T ss_pred HHHhhcCCCeE
Confidence 99999998875
No 399
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.22 E-value=0.032 Score=52.89 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 010885 163 ILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~L 184 (498)
|+|.|+|||||||+.+.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999875
No 400
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.22 E-value=0.039 Score=51.49 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998544
No 401
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.22 E-value=0.043 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
-..|+|+|++||||||+...|...+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ceEEEEECCCccccchHHHHHhhhcc
Confidence 45899999999999999999998884
No 402
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.036 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++.|.|++||||||+.+.|+..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998644
No 403
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.19 E-value=0.04 Score=52.05 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++|+||||+.+.|+..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 404
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.17 E-value=0.058 Score=56.45 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..++.||||+|||+.|..+|.+|+.+.
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~~~ 85 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARALNCEQ 85 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHhcCcc
Confidence 689999999999999999999998744
No 405
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.17 E-value=0.04 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 406
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.15 E-value=0.11 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..|+|+|++||||||++..|...+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 407
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.14 E-value=0.045 Score=54.60 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..+++|.|+||+||||+|.+++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998764
No 408
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.13 E-value=0.042 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998644
No 409
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.13 E-value=0.042 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 410
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.059 Score=60.64 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+.+..+||+|++|+||||+|+.||+.+++.
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 345578999999999999999999999875
No 411
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.12 E-value=0.072 Score=54.12 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=30.1
Q ss_pred HHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 152 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 152 ~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+...+.|..++++|+.|+||+|+|..+|+.+.+.
T Consensus 18 ~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 18 NSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred HHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 334456678899999999999999999999988654
No 412
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.043 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++|+||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998544
No 413
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=94.09 E-value=0.21 Score=41.63 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=60.1
Q ss_pred ccccchHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 010885 80 HYYVFSRFLLSRMLTVTK-----IPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRF 154 (498)
Q Consensus 80 h~y~fSRglLsR~Lt~ag-----Va~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~ 154 (498)
...||+..-|.++|..++ ++...+..|+.++...|.+.+...|+.+++.+.|...|.+.++. .+++.|.+++.+
T Consensus 9 ~~e~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~~-~~a~~yi~yr~~ 87 (90)
T PF03477_consen 9 RVEPFDREKIVRAIEKACEASRELSEEDAEEIASEVENKLYDSGKEEISTEEIQDIVENALMEEGFY-DVARAYILYRNI 87 (90)
T ss_dssp SEEES-HHHHHHHHHTTCTTTSTTTST-HHHHHHHHHTC-ST----TEEHHHHHHHHHHHHHTSTTH-HHHHHHHHHHHH
T ss_pred cEeeecHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Confidence 569999999999999998 78899999999999999988888999999999999999886644 368888887766
Q ss_pred hc
Q 010885 155 HH 156 (498)
Q Consensus 155 ~~ 156 (498)
+.
T Consensus 88 r~ 89 (90)
T PF03477_consen 88 RK 89 (90)
T ss_dssp HH
T ss_pred Hc
Confidence 53
No 414
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.08 E-value=0.044 Score=51.98 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+.+++++|++|+|||||...|.....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 36899999999999999999976553
No 415
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.07 E-value=0.044 Score=51.76 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998644
No 416
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.082 Score=55.61 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
..|..++|.|+||.|||.+|+.++..+|+..+.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~ 196 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK 196 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEE
Confidence 468999999999999999999999999988754
No 417
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.05 E-value=0.049 Score=47.74 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
|..|++.|.+|+||||+..+|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 667999999999999999999654
No 418
>PRK13764 ATPase; Provisional
Probab=94.05 E-value=0.077 Score=59.67 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
...|+|+|++||||||++..|+..+.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999998874
No 419
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.044 Score=52.69 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998655
No 420
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.04 E-value=0.043 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-++|.|+||+|||++|+.|..-|
T Consensus 24 ~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 24 HLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -EEEES-CCCTHHHHHHHHHHCS
T ss_pred CeEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999766
No 421
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.04 E-value=0.041 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4589999999999999999998544
No 422
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.03 E-value=0.046 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++|+||||+.+.|+..+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998654
No 423
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.045 Score=52.26 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998544
No 424
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.00 E-value=0.051 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
.|-+..|.|++||||||+..+|+--|+.
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3668899999999999999999887764
No 425
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.99 E-value=0.049 Score=52.15 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34589999999999999999998765
No 426
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.98 E-value=0.053 Score=51.42 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe--EEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPN--VLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~--Vi~tD~ire 197 (498)
.+.-++|.|++|+|||.+|..++.++ |.+. +...|.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 45679999999999999999999766 5443 333444444
No 427
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.97 E-value=0.058 Score=51.68 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+...+++|.|+||+|||+++..++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999998744
No 428
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.092 Score=58.49 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
=|++.||||+|||.+|+++...|+.
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNA 282 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNA 282 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcC
Confidence 4899999999999999999999975
No 429
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.96 E-value=0.043 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34589999999999999999997544
No 430
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.95 E-value=0.044 Score=59.75 Aligned_cols=27 Identities=33% Similarity=0.349 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
...|++.|+||+|||++|+.||..++.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 346788999999999999999998854
No 431
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.94 E-value=0.048 Score=46.62 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 010885 163 ILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~ 182 (498)
|+|.|.+|+||||+...|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 432
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.93 E-value=0.049 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 433
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.92 E-value=0.047 Score=52.41 Aligned_cols=26 Identities=35% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998655
No 434
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.92 E-value=0.049 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++|||||||.+.|+..+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 435
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.90 E-value=0.066 Score=43.44 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+|.|++||||||+.-++.--|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998876543
No 436
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.89 E-value=0.049 Score=57.35 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-+|+|+|++||||||+...|...+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998876
No 437
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.88 E-value=0.048 Score=55.18 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--.+.|.|+|||||||+-+.+|--.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998543
No 438
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.88 E-value=0.048 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.|++.|++|||||||++.|-.
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 439
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.88 E-value=0.046 Score=57.48 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-.++|.|||||||||+-+.+|--.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998533
No 440
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.88 E-value=0.051 Score=51.45 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 441
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.87 E-value=0.05 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+++|.|++|+||||+.+.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5899999999999999999974
No 442
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.86 E-value=0.05 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998644
No 443
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.86 E-value=0.15 Score=59.25 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=24.2
Q ss_pred cCCC-eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVP-LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P-~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+| ..++|.|++|+|||++|+.|+..+
T Consensus 591 ~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 591 PNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3456 478899999999999999999977
No 444
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.85 E-value=0.18 Score=53.94 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-.++|.|++|+||||+++.|++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999999999877
No 445
>PRK06851 hypothetical protein; Provisional
Probab=93.85 E-value=0.073 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...++++|.|+||+||||+...++..+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 456789999999999999999999877
No 446
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.053 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998654
No 447
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.85 E-value=0.051 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.203 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++|+|||||.+.|+..+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999998654
No 448
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.83 E-value=0.052 Score=51.07 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 449
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.83 E-value=0.061 Score=46.97 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.|++.|.+|+||||+..+|...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999753
No 450
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.83 E-value=0.055 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.|+++|.+|+||||+..+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 451
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.82 E-value=0.082 Score=58.66 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=28.8
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 154 ~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+...+.|..++++|++|+||||+|+.|++.+.+.
T Consensus 30 I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 30 LDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 3445568889999999999999999999998654
No 452
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.80 E-value=0.054 Score=56.22 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
-+|+|+|++||||||+...|...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987664
No 453
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.80 E-value=0.051 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.-++.|.|++||||||+.+.|+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999865
No 454
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.79 E-value=0.063 Score=52.79 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=29.0
Q ss_pred cCCC-eEEEEEcCCCCcHHHHHHHHHHhcC----CCeEEcchhHH
Q 010885 157 QRVP-LVILVCGTACVGKSTIATQLAQRLN----LPNVLQTDMVY 196 (498)
Q Consensus 157 ~r~P-~iIlI~G~pGSGKSTlA~~LA~~Lg----l~~Vi~tD~ir 196 (498)
..+| +.|-++|+||||||++...+.+.|. +. |+..|.+.
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~a-VI~~Di~t 52 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIA-VITGDIYT 52 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeE-EEeceeec
Confidence 4467 7899999999999999988877773 33 34455544
No 455
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.79 E-value=0.057 Score=67.12 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE--cchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL--QTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi--~tD~i 195 (498)
+.|+=||+.||||||||.+|++||...+++.+. .+|.+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence 457789999999999999999999999998642 34444
No 456
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.052 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 457
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.78 E-value=0.049 Score=46.87 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 010885 163 ILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~ 182 (498)
|.|+|++|+||||+...|..
T Consensus 2 i~i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc
Confidence 68999999999999999864
No 458
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.78 E-value=0.053 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999998654
No 459
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.78 E-value=0.14 Score=56.43 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
-++|.|+||+|||++|+.|+...+
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHHhc
Confidence 589999999999999999998764
No 460
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.77 E-value=0.082 Score=54.01 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=27.3
Q ss_pred HHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 149 RMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 149 ~L~~~~~-~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++.++. +..+..+|=|+|+||+|||||...|...+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 3445544 34567899999999999999999999887
No 461
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.053 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 462
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.77 E-value=0.062 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..++.|+|+||||||+++..++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999854
No 463
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.75 E-value=0.054 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.226 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999998644
No 464
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.74 E-value=0.053 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 465
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.73 E-value=0.07 Score=60.09 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|.-|++.|+||+||||+++.++.+++.+.+.
T Consensus 183 ~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~ 215 (644)
T PRK10733 183 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT 215 (644)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 346669999999999999999999999988754
No 466
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.73 E-value=0.056 Score=51.10 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999998644
No 467
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.73 E-value=0.25 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++|.|++|+|||.|..+++.++
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 468
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.063 Score=58.49 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.||+.||+|||||.+|..||+-++++.++
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaI 256 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAI 256 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEE
Confidence 58999999999999999999999999876
No 469
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.058 Score=50.15 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++|+||||+.+.|+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 470
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.71 E-value=0.053 Score=47.24 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 010885 163 ILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~ 182 (498)
|+|+|++|+||||+...|..
T Consensus 2 i~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999864
No 471
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=93.70 E-value=0.078 Score=49.25 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=25.8
Q ss_pred HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 151 MTRFHHQRVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 151 ~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
++.+...++...|++.|++||||||+...|..
T Consensus 5 ~~~~~~~~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 5 LSKLKSKKKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp HHHCTTTTSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred HHHhcccCcEEEEEEECCCccchHHHHHHhhh
Confidence 34444456677899999999999999999964
No 472
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.69 E-value=0.056 Score=52.52 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++|||||||.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 473
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.69 E-value=0.056 Score=51.82 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 474
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.67 E-value=0.057 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-++.|.|++|+||||+.+.|+..+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998554
No 475
>PHA02624 large T antigen; Provisional
Probab=93.66 E-value=0.07 Score=60.11 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
+-.+|+|.||||+||||++..|.+.||-..
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~v 459 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKS 459 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 345999999999999999999999995443
No 476
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.66 E-value=0.06 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.|+++|++|+||||+...|..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999853
No 477
>PRK07933 thymidylate kinase; Validated
Probab=93.64 E-value=0.059 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
++|.|-|+-||||||+++.|++.|.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999983
No 478
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.63 E-value=0.059 Score=51.94 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++|||||||.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999998643
No 479
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.60 E-value=0.16 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...|+|+|++||||||++..|+..+
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999998764
No 480
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.06 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..-++.|.|++||||||+.+.|+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999985
No 481
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.60 E-value=0.059 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
--.+.|+||||||||||-..|+-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999874
No 482
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.079 Score=54.61 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC--eEEcchhHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLP--NVLQTDMVYELL 199 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~--~Vi~tD~ire~m 199 (498)
..|+=+++.||||||||.+|++.|...... +|..++.+.+.+
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 568889999999999999999999877543 455666665543
No 483
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.59 E-value=0.063 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
++..+++|.|+||+|||+++.+++..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 35679999999999999999987643
No 484
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.58 E-value=0.079 Score=54.64 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+...+|-|+|+||||||||...|...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346689999999999999999998876
No 485
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.58 E-value=0.059 Score=52.46 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999998654
No 486
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.061 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34589999999999999999998643
No 487
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.048 Score=59.14 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|++.||||+|||.+|+.||.+-|+.|-+
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~ 414 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAI 414 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceeh
Confidence 579999999999999999999999999854
No 488
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.54 E-value=0.072 Score=51.20 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++..+++|+|+||+|||+++..++..+
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344699999999999999999887655
No 489
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.54 E-value=0.065 Score=47.54 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.|++.|.+|+||||+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999875
No 490
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.53 E-value=0.065 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 010885 163 ILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~L 184 (498)
|+++|++|+|||||..+|....
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 7899999999999999997654
No 491
>PRK10646 ADP-binding protein; Provisional
Probab=93.51 E-value=0.084 Score=49.75 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
...+|++.|.=|+||||+++.|++.||+..
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~ 56 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGHQG 56 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 345899999999999999999999999753
No 492
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.51 E-value=0.061 Score=53.15 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++|||||||.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 493
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.51 E-value=0.063 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++|+||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44589999999999999999998655
No 494
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.062 Score=52.32 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 495
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.51 E-value=0.045 Score=54.32 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.6
Q ss_pred EEcCCCCcHHHHHHHHHHhcC
Q 010885 165 VCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 165 I~G~pGSGKSTlA~~LA~~Lg 185 (498)
+.||+||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999874
No 496
>PRK10908 cell division protein FtsE; Provisional
Probab=93.51 E-value=0.064 Score=51.31 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998554
No 497
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.47 E-value=0.064 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 498
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.47 E-value=0.07 Score=46.97 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.|++.|.+|+||||+...|..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999864
No 499
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.47 E-value=0.071 Score=48.38 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..|+|+|.+|+||||+...+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 500
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.46 E-value=0.16 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..|+|+|++||||||+...|...+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998875
Done!