Query 010885
Match_columns 498
No_of_seqs 299 out of 1799
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ly1_A Polynucleotide kinase; 98.8 1.7E-08 5.8E-13 88.9 9.2 87 159-262 1-91 (181)
2 2rhm_A Putative kinase; P-loop 98.8 2.7E-08 9.1E-13 88.9 9.7 84 158-258 3-86 (193)
3 1gvn_B Zeta; postsegregational 98.8 3.7E-08 1.3E-12 96.8 11.6 112 120-262 5-123 (287)
4 3sr0_A Adenylate kinase; phosp 98.7 1.9E-08 6.3E-13 95.1 7.9 82 161-257 1-83 (206)
5 3umf_A Adenylate kinase; rossm 98.7 5.1E-08 1.8E-12 93.3 9.7 85 157-256 26-115 (217)
6 1qhx_A CPT, protein (chloramph 98.6 8.7E-08 3E-12 84.9 9.0 93 159-260 2-97 (178)
7 3lw7_A Adenylate kinase relate 98.6 5.9E-08 2E-12 83.9 7.7 40 161-201 2-41 (179)
8 2c95_A Adenylate kinase 1; tra 98.6 1.4E-07 4.8E-12 84.4 9.7 85 158-257 7-96 (196)
9 2bwj_A Adenylate kinase 5; pho 98.6 1.8E-07 6.1E-12 83.9 9.7 41 159-199 11-51 (199)
10 1tev_A UMP-CMP kinase; ploop, 98.6 2.5E-07 8.5E-12 82.2 10.4 41 159-199 2-42 (196)
11 1ukz_A Uridylate kinase; trans 98.6 3.7E-07 1.3E-11 82.9 11.1 43 157-199 12-54 (203)
12 3tlx_A Adenylate kinase 2; str 98.5 1.8E-07 6.2E-12 89.1 9.1 44 157-200 26-69 (243)
13 1qf9_A UMP/CMP kinase, protein 98.5 3.8E-07 1.3E-11 80.8 10.6 43 158-200 4-46 (194)
14 2p5t_B PEZT; postsegregational 98.5 5E-07 1.7E-11 86.3 11.9 115 121-262 5-122 (253)
15 1aky_A Adenylate kinase; ATP:A 98.5 1.9E-07 6.5E-12 86.4 8.5 43 158-200 2-44 (220)
16 3fb4_A Adenylate kinase; psych 98.5 2.9E-07 1E-11 84.4 9.3 41 161-201 1-41 (216)
17 2cdn_A Adenylate kinase; phosp 98.5 3.4E-07 1.2E-11 83.3 9.5 44 157-200 17-60 (201)
18 3dl0_A Adenylate kinase; phosp 98.5 3.2E-07 1.1E-11 84.3 9.3 40 162-201 2-41 (216)
19 1ltq_A Polynucleotide kinase; 98.5 2.6E-07 9E-12 89.0 9.1 88 159-263 1-92 (301)
20 3cm0_A Adenylate kinase; ATP-b 98.5 2.1E-07 7.2E-12 83.0 7.2 42 159-200 3-44 (186)
21 2vli_A Antibiotic resistance p 98.5 4.1E-07 1.4E-11 80.7 8.7 33 159-191 4-36 (183)
22 2xb4_A Adenylate kinase; ATP-b 98.5 2.8E-07 9.5E-12 86.3 7.8 39 161-199 1-39 (223)
23 3t61_A Gluconokinase; PSI-biol 98.4 3.6E-07 1.2E-11 83.3 7.8 37 158-195 16-52 (202)
24 1zd8_A GTP:AMP phosphotransfer 98.4 4.7E-07 1.6E-11 84.3 8.6 42 158-199 5-46 (227)
25 3be4_A Adenylate kinase; malar 98.4 3.8E-07 1.3E-11 84.7 8.0 42 159-200 4-45 (217)
26 1kht_A Adenylate kinase; phosp 98.4 1E-06 3.5E-11 78.1 9.9 41 160-200 3-48 (192)
27 1ak2_A Adenylate kinase isoenz 98.3 1.1E-06 3.8E-11 82.4 8.7 43 158-200 14-56 (233)
28 3a4m_A L-seryl-tRNA(SEC) kinas 98.3 8E-07 2.7E-11 85.3 7.9 80 159-263 3-86 (260)
29 1e4v_A Adenylate kinase; trans 98.3 8.1E-07 2.8E-11 82.0 7.5 40 162-201 2-41 (214)
30 3trf_A Shikimate kinase, SK; a 98.3 2.3E-06 7.8E-11 76.4 9.2 40 160-200 5-44 (185)
31 3vaa_A Shikimate kinase, SK; s 98.3 3.6E-06 1.2E-10 76.9 10.6 39 159-197 24-62 (199)
32 1zak_A Adenylate kinase; ATP:A 98.3 9.3E-07 3.2E-11 81.9 6.6 43 158-200 3-45 (222)
33 3zvl_A Bifunctional polynucleo 98.2 9E-07 3.1E-11 91.3 6.2 67 159-263 257-323 (416)
34 1nks_A Adenylate kinase; therm 98.2 1.4E-06 4.8E-11 77.2 6.7 39 161-199 2-45 (194)
35 2pt5_A Shikimate kinase, SK; a 98.2 4.9E-06 1.7E-10 72.9 9.8 37 161-198 1-37 (168)
36 4eun_A Thermoresistant glucoki 98.2 7.1E-06 2.4E-10 75.0 10.8 37 158-195 27-63 (200)
37 2iyv_A Shikimate kinase, SK; t 98.2 1E-06 3.4E-11 78.8 4.6 39 160-199 2-40 (184)
38 1knq_A Gluconate kinase; ALFA/ 98.2 9.1E-06 3.1E-10 72.0 10.7 36 159-195 7-42 (175)
39 1via_A Shikimate kinase; struc 98.1 7.4E-06 2.5E-10 72.9 9.4 36 162-198 6-41 (175)
40 2axn_A 6-phosphofructo-2-kinas 98.1 5.6E-06 1.9E-10 88.3 9.4 96 158-264 33-134 (520)
41 2plr_A DTMP kinase, probable t 98.1 1.2E-05 4E-10 72.5 10.0 42 159-200 3-50 (213)
42 3e70_C DPA, signal recognition 98.1 6E-06 2.1E-10 83.3 8.6 93 89-184 59-153 (328)
43 1zuh_A Shikimate kinase; alpha 98.0 4.3E-06 1.5E-10 73.8 5.3 36 161-197 8-43 (168)
44 3gmt_A Adenylate kinase; ssgci 98.0 1.1E-05 3.9E-10 78.1 8.7 41 160-200 8-48 (230)
45 2f6r_A COA synthase, bifunctio 98.0 1.7E-05 5.8E-10 77.4 9.9 36 158-195 73-108 (281)
46 3b9q_A Chloroplast SRP recepto 98.0 2E-05 6.9E-10 78.4 10.2 101 88-196 35-140 (302)
47 1e6c_A Shikimate kinase; phosp 98.0 3.8E-06 1.3E-10 73.8 4.5 37 161-198 3-39 (173)
48 1kag_A SKI, shikimate kinase I 98.0 4.4E-06 1.5E-10 73.6 4.8 38 159-197 3-40 (173)
49 3kb2_A SPBC2 prophage-derived 98.0 5.6E-06 1.9E-10 72.1 5.2 36 161-197 2-37 (173)
50 3iij_A Coilin-interacting nucl 98.0 4.8E-06 1.6E-10 74.3 4.6 40 159-198 10-49 (180)
51 1y63_A LMAJ004144AAA protein; 98.0 4.9E-06 1.7E-10 75.3 4.7 39 159-197 9-48 (184)
52 2og2_A Putative signal recogni 98.0 2.3E-05 7.9E-10 80.3 10.1 100 89-196 93-197 (359)
53 2yvu_A Probable adenylyl-sulfa 97.9 2.1E-05 7.3E-10 70.6 8.3 42 158-199 11-56 (186)
54 1cke_A CK, MSSA, protein (cyti 97.9 7.6E-06 2.6E-10 75.1 5.3 40 159-198 4-43 (227)
55 1uf9_A TT1252 protein; P-loop, 97.9 1E-05 3.5E-10 72.6 5.7 40 158-198 6-45 (203)
56 1zu4_A FTSY; GTPase, signal re 97.9 1.8E-05 6E-10 79.5 7.7 101 88-195 39-144 (320)
57 3uie_A Adenylyl-sulfate kinase 97.9 4.1E-05 1.4E-09 70.0 9.1 40 158-197 23-66 (200)
58 2yhs_A FTSY, cell division pro 97.9 2.4E-05 8.2E-10 83.8 8.6 98 88-196 230-333 (503)
59 1m7g_A Adenylylsulfate kinase; 97.9 3.2E-05 1.1E-09 71.3 8.2 42 157-198 22-68 (211)
60 2pbr_A DTMP kinase, thymidylat 97.9 6.8E-05 2.3E-09 66.5 9.9 30 161-190 1-33 (195)
61 2grj_A Dephospho-COA kinase; T 97.9 1.1E-05 3.9E-10 75.1 5.0 46 154-199 6-51 (192)
62 3ake_A Cytidylate kinase; CMP 97.8 1.6E-05 5.3E-10 71.7 5.5 36 162-197 4-39 (208)
63 4eaq_A DTMP kinase, thymidylat 97.8 0.00024 8.2E-09 67.4 13.5 29 157-185 23-51 (229)
64 1vht_A Dephospho-COA kinase; s 97.8 1.8E-05 6.1E-10 72.8 5.3 37 159-197 3-39 (218)
65 1jjv_A Dephospho-COA kinase; P 97.8 1.8E-05 6.2E-10 72.0 5.2 37 160-197 2-38 (206)
66 1uj2_A Uridine-cytidine kinase 97.8 1.5E-05 5.1E-10 75.7 4.8 30 158-187 20-49 (252)
67 2px0_A Flagellar biosynthesis 97.8 3.1E-05 1.1E-09 76.7 7.0 84 89-184 45-129 (296)
68 1vma_A Cell division protein F 97.8 4E-05 1.4E-09 76.6 7.8 91 88-196 50-144 (306)
69 2bbw_A Adenylate kinase 4, AK4 97.8 1.8E-05 6.3E-10 74.5 5.1 40 159-198 26-65 (246)
70 3fdi_A Uncharacterized protein 97.8 5.3E-05 1.8E-09 70.7 8.0 37 160-197 6-42 (201)
71 2bdt_A BH3686; alpha-beta prot 97.8 3.1E-05 1.1E-09 69.5 6.1 37 161-197 3-39 (189)
72 3foz_A TRNA delta(2)-isopenten 97.8 2.2E-05 7.6E-10 79.6 5.7 38 156-194 6-43 (316)
73 1zp6_A Hypothetical protein AT 97.7 8E-05 2.7E-09 66.5 8.0 42 157-198 6-48 (191)
74 3kl4_A SRP54, signal recogniti 97.7 9.1E-05 3.1E-09 77.8 9.7 100 89-196 31-137 (433)
75 2h92_A Cytidylate kinase; ross 97.7 2.2E-05 7.7E-10 71.9 4.4 38 160-197 3-40 (219)
76 3dm5_A SRP54, signal recogniti 97.7 0.00015 5.1E-09 76.5 11.1 100 89-196 35-140 (443)
77 3r20_A Cytidylate kinase; stru 97.7 2.7E-05 9.2E-10 75.4 4.9 40 158-197 7-46 (233)
78 2xxa_A Signal recognition part 97.7 0.00012 4E-09 76.6 10.0 95 89-194 34-139 (433)
79 2ze6_A Isopentenyl transferase 97.7 3.3E-05 1.1E-09 74.1 4.9 34 161-195 2-35 (253)
80 1rj9_A FTSY, signal recognitio 97.6 5.8E-05 2E-09 75.3 6.6 87 88-184 34-126 (304)
81 2gks_A Bifunctional SAT/APS ki 97.6 0.00013 4.5E-09 78.3 9.8 83 158-261 370-456 (546)
82 2if2_A Dephospho-COA kinase; a 97.6 3.1E-05 1E-09 70.2 4.1 36 161-197 2-37 (204)
83 2v54_A DTMP kinase, thymidylat 97.6 3.6E-05 1.2E-09 69.3 4.4 32 159-190 3-35 (204)
84 3d3q_A TRNA delta(2)-isopenten 97.6 2.9E-05 1E-09 79.3 4.1 36 159-195 6-41 (340)
85 1j8m_F SRP54, signal recogniti 97.6 0.00013 4.4E-09 72.4 8.5 98 89-193 32-135 (297)
86 1q3t_A Cytidylate kinase; nucl 97.6 5.2E-05 1.8E-09 71.2 5.0 40 158-197 14-53 (236)
87 3exa_A TRNA delta(2)-isopenten 97.6 6.2E-05 2.1E-09 76.6 5.8 41 159-200 2-44 (322)
88 4e22_A Cytidylate kinase; P-lo 97.6 6.4E-05 2.2E-09 71.9 5.5 39 159-197 26-64 (252)
89 3crm_A TRNA delta(2)-isopenten 97.6 0.00011 3.6E-09 74.7 7.2 36 159-195 4-39 (323)
90 1bif_A 6-phosphofructo-2-kinas 97.6 0.0002 6.9E-09 74.6 9.5 93 158-261 37-135 (469)
91 3a8t_A Adenylate isopentenyltr 97.6 0.00011 3.7E-09 75.2 7.2 37 158-195 38-74 (339)
92 3nwj_A ATSK2; P loop, shikimat 97.5 0.00014 4.6E-09 70.8 7.3 39 160-198 48-86 (250)
93 2qt1_A Nicotinamide riboside k 97.5 4E-05 1.4E-09 70.0 3.3 39 158-196 19-58 (207)
94 2wwf_A Thymidilate kinase, put 97.5 2.8E-05 9.4E-10 70.5 2.1 31 158-188 8-38 (212)
95 2ffh_A Protein (FFH); SRP54, s 97.5 0.00023 8E-09 74.5 9.0 98 89-195 34-137 (425)
96 2jaq_A Deoxyguanosine kinase; 97.5 6.4E-05 2.2E-09 67.2 4.0 29 161-189 1-29 (205)
97 1m8p_A Sulfate adenylyltransfe 97.5 0.00038 1.3E-08 75.2 10.5 42 158-199 394-440 (573)
98 1nn5_A Similar to deoxythymidy 97.4 5.5E-05 1.9E-09 68.4 3.1 29 158-186 7-35 (215)
99 3tau_A Guanylate kinase, GMP k 97.4 0.0002 7E-09 66.1 6.8 28 158-185 6-33 (208)
100 2z0h_A DTMP kinase, thymidylat 97.4 9E-05 3.1E-09 66.1 4.3 30 161-190 1-33 (197)
101 2qor_A Guanylate kinase; phosp 97.4 8.6E-05 2.9E-09 68.0 3.8 30 156-185 8-37 (204)
102 2v3c_C SRP54, signal recogniti 97.4 0.0003 1E-08 73.5 8.2 98 89-195 33-138 (432)
103 1x6v_B Bifunctional 3'-phospho 97.4 0.00042 1.4E-08 76.1 9.2 39 159-197 51-93 (630)
104 2pez_A Bifunctional 3'-phospho 97.4 0.00018 6.3E-09 64.0 5.4 39 159-197 4-46 (179)
105 4edh_A DTMP kinase, thymidylat 97.4 0.0012 4.3E-08 62.3 11.3 84 159-256 5-99 (213)
106 3t15_A Ribulose bisphosphate c 97.3 0.00012 4E-09 71.7 4.3 34 157-190 33-66 (293)
107 4gp7_A Metallophosphoesterase; 97.3 0.00058 2E-08 61.3 8.2 78 159-261 8-85 (171)
108 3eph_A TRNA isopentenyltransfe 97.3 0.00013 4.5E-09 76.3 4.3 40 160-200 2-43 (409)
109 3hdt_A Putative kinase; struct 97.3 0.00021 7.3E-09 68.2 5.0 41 159-200 13-53 (223)
110 2j37_W Signal recognition part 97.3 0.0004 1.4E-08 74.2 7.6 98 89-194 35-139 (504)
111 3h4m_A Proteasome-activating n 97.3 0.00022 7.7E-09 67.7 5.0 32 158-189 49-80 (285)
112 4b4t_K 26S protease regulatory 97.2 0.00024 8E-09 74.6 5.5 33 158-190 204-236 (428)
113 4b4t_M 26S protease regulatory 97.2 0.00024 8.3E-09 74.6 5.0 33 158-190 213-245 (434)
114 1ls1_A Signal recognition part 97.2 0.0011 3.7E-08 65.5 9.4 86 90-184 35-122 (295)
115 3asz_A Uridine kinase; cytidin 97.2 0.00014 4.7E-09 66.2 2.8 35 158-192 4-40 (211)
116 4b4t_L 26S protease subunit RP 97.2 0.00033 1.1E-08 73.7 5.7 33 158-190 213-245 (437)
117 3cf0_A Transitional endoplasmi 97.1 0.00042 1.4E-08 67.6 5.6 32 158-189 47-78 (301)
118 3lv8_A DTMP kinase, thymidylat 97.1 0.002 6.9E-08 62.1 10.1 26 159-184 26-51 (236)
119 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00038 1.3E-08 64.8 4.8 32 158-189 37-68 (262)
120 3v9p_A DTMP kinase, thymidylat 97.1 0.0012 4E-08 63.4 8.2 27 158-184 23-49 (227)
121 4b4t_H 26S protease regulatory 97.1 0.00035 1.2E-08 74.2 5.0 33 158-190 241-273 (467)
122 4b4t_J 26S protease regulatory 97.1 0.00035 1.2E-08 73.0 4.8 33 158-190 180-212 (405)
123 1ofh_A ATP-dependent HSL prote 97.1 0.00091 3.1E-08 63.5 7.2 32 158-189 48-79 (310)
124 1a7j_A Phosphoribulokinase; tr 97.1 0.00011 3.7E-09 72.5 0.6 37 159-196 4-45 (290)
125 3ld9_A DTMP kinase, thymidylat 97.0 0.0019 6.6E-08 61.9 9.1 29 158-186 19-47 (223)
126 2j41_A Guanylate kinase; GMP, 97.0 0.00038 1.3E-08 62.5 3.9 26 159-184 5-30 (207)
127 4b4t_I 26S protease regulatory 97.0 0.00058 2E-08 72.1 5.8 33 158-190 214-246 (437)
128 4tmk_A Protein (thymidylate ki 97.0 0.0031 1.1E-07 59.7 10.2 86 160-256 3-100 (213)
129 1d2n_A N-ethylmaleimide-sensit 97.0 0.0011 3.6E-08 63.1 6.8 32 158-189 62-93 (272)
130 1lv7_A FTSH; alpha/beta domain 96.9 0.00063 2.2E-08 64.0 4.7 31 159-189 44-74 (257)
131 3c8u_A Fructokinase; YP_612366 96.9 0.00058 2E-08 62.8 4.3 28 158-185 20-47 (208)
132 1g41_A Heat shock protein HSLU 96.9 0.00087 3E-08 70.7 6.0 32 159-190 49-80 (444)
133 3hws_A ATP-dependent CLP prote 96.9 0.0017 5.8E-08 64.7 7.8 32 159-190 50-81 (363)
134 1njg_A DNA polymerase III subu 96.9 0.00081 2.8E-08 59.8 4.9 30 157-186 42-71 (250)
135 3b9p_A CG5977-PA, isoform A; A 96.9 0.00067 2.3E-08 64.9 4.5 31 159-189 53-83 (297)
136 1jbk_A CLPB protein; beta barr 96.9 0.0011 3.9E-08 57.0 5.5 27 158-184 41-67 (195)
137 3bos_A Putative DNA replicatio 96.9 0.0011 3.7E-08 60.1 5.5 27 159-185 51-77 (242)
138 3syl_A Protein CBBX; photosynt 96.8 0.0018 6.3E-08 61.9 6.9 28 158-185 65-92 (309)
139 2x8a_A Nuclear valosin-contain 96.8 0.0011 3.6E-08 64.6 5.2 31 159-189 43-73 (274)
140 3hjn_A DTMP kinase, thymidylat 96.8 0.0047 1.6E-07 57.3 9.3 30 161-190 1-33 (197)
141 2p65_A Hypothetical protein PF 96.8 0.0013 4.5E-08 56.9 5.0 27 158-184 41-67 (187)
142 3tmk_A Thymidylate kinase; pho 96.8 0.005 1.7E-07 58.6 9.4 29 159-187 4-32 (216)
143 4hlc_A DTMP kinase, thymidylat 96.7 0.0069 2.4E-07 56.7 10.1 82 160-257 2-93 (205)
144 3tr0_A Guanylate kinase, GMP k 96.7 0.001 3.4E-08 59.8 4.2 27 159-185 6-32 (205)
145 1kgd_A CASK, peripheral plasma 96.7 0.00098 3.4E-08 60.0 4.0 26 160-185 5-30 (180)
146 2ocp_A DGK, deoxyguanosine kin 96.7 0.001 3.6E-08 62.3 4.4 29 159-187 1-30 (241)
147 3eie_A Vacuolar protein sortin 96.7 0.00099 3.4E-08 65.5 4.3 31 159-189 50-80 (322)
148 1p5z_B DCK, deoxycytidine kina 96.7 0.00051 1.7E-08 65.4 2.0 31 158-188 22-53 (263)
149 3tqc_A Pantothenate kinase; bi 96.7 0.0014 4.7E-08 66.2 5.2 29 157-185 89-117 (321)
150 1gtv_A TMK, thymidylate kinase 96.7 0.00044 1.5E-08 62.6 1.3 25 161-185 1-25 (214)
151 1u0j_A DNA replication protein 96.7 0.0037 1.3E-07 61.9 8.1 58 127-186 71-130 (267)
152 1g8f_A Sulfate adenylyltransfe 96.7 0.0013 4.5E-08 70.5 5.0 29 158-186 393-421 (511)
153 3u61_B DNA polymerase accessor 96.6 0.0014 4.7E-08 63.6 4.7 34 156-189 44-77 (324)
154 3a00_A Guanylate kinase, GMP k 96.6 0.00096 3.3E-08 60.3 3.3 26 160-185 1-26 (186)
155 1rz3_A Hypothetical protein rb 96.6 0.0017 5.8E-08 59.5 4.9 40 157-196 19-62 (201)
156 2jeo_A Uridine-cytidine kinase 96.6 0.0014 4.7E-08 61.9 4.2 30 158-187 23-52 (245)
157 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0016 5.3E-08 64.6 4.5 30 159-188 44-74 (322)
158 2r62_A Cell division protease 96.6 0.00057 2E-08 64.4 1.3 31 159-189 43-73 (268)
159 2qmh_A HPR kinase/phosphorylas 96.5 0.0014 4.8E-08 62.9 3.9 34 160-195 34-67 (205)
160 3d8b_A Fidgetin-like protein 1 96.5 0.0017 5.7E-08 65.1 4.6 32 158-189 115-146 (357)
161 3ec2_A DNA replication protein 96.5 0.0012 4.2E-08 58.7 3.2 25 160-184 38-62 (180)
162 2qby_B CDC6 homolog 3, cell di 96.5 0.0028 9.5E-08 62.1 6.0 28 157-184 42-69 (384)
163 3pfi_A Holliday junction ATP-d 96.5 0.0018 6E-08 63.1 4.6 33 158-190 53-85 (338)
164 1um8_A ATP-dependent CLP prote 96.5 0.0016 5.6E-08 65.0 4.4 32 159-190 71-102 (376)
165 2chg_A Replication factor C sm 96.5 0.0023 7.8E-08 56.5 4.9 23 162-184 40-62 (226)
166 1odf_A YGR205W, hypothetical 3 96.5 0.0017 5.8E-08 64.2 4.2 29 157-185 28-56 (290)
167 1ixz_A ATP-dependent metallopr 96.5 0.0024 8.3E-08 59.9 4.9 31 159-189 48-78 (254)
168 1sq5_A Pantothenate kinase; P- 96.5 0.0036 1.2E-07 61.6 6.3 28 158-185 78-105 (308)
169 4i1u_A Dephospho-COA kinase; s 96.4 0.0026 8.9E-08 60.7 5.2 39 160-199 9-47 (210)
170 2qp9_X Vacuolar protein sortin 96.4 0.0016 5.4E-08 65.4 3.8 31 159-189 83-113 (355)
171 1iy2_A ATP-dependent metallopr 96.4 0.0066 2.3E-07 58.0 7.9 30 160-189 73-102 (278)
172 1in4_A RUVB, holliday junction 96.4 0.0017 5.9E-08 64.3 4.0 30 159-188 50-79 (334)
173 3uk6_A RUVB-like 2; hexameric 96.4 0.0025 8.4E-08 62.6 4.9 27 160-186 70-96 (368)
174 4fcw_A Chaperone protein CLPB; 96.4 0.004 1.4E-07 59.5 6.2 27 158-184 44-71 (311)
175 2c9o_A RUVB-like 1; hexameric 96.4 0.0042 1.4E-07 64.3 6.6 31 159-189 62-94 (456)
176 2w58_A DNAI, primosome compone 96.4 0.0021 7.1E-08 58.0 3.7 25 160-184 54-78 (202)
177 1dek_A Deoxynucleoside monopho 96.4 0.0024 8.2E-08 62.0 4.4 40 161-200 2-41 (241)
178 3n70_A Transport activator; si 96.3 0.007 2.4E-07 52.6 6.7 25 160-184 24-48 (145)
179 1jr3_A DNA polymerase III subu 96.3 0.0036 1.2E-07 61.1 5.2 31 157-187 35-65 (373)
180 3vfd_A Spastin; ATPase, microt 96.3 0.0028 9.6E-08 63.9 4.6 31 159-189 147-177 (389)
181 1l8q_A Chromosomal replication 96.3 0.0042 1.4E-07 60.4 5.6 30 159-188 36-68 (324)
182 3te6_A Regulatory protein SIR3 96.2 0.0033 1.1E-07 63.4 4.9 38 147-184 32-69 (318)
183 1sxj_A Activator 1 95 kDa subu 96.2 0.0028 9.6E-08 66.7 4.5 31 159-189 76-106 (516)
184 3ch4_B Pmkase, phosphomevalona 96.2 0.005 1.7E-07 58.8 5.4 41 159-199 10-53 (202)
185 1lvg_A Guanylate kinase, GMP k 96.2 0.0023 7.9E-08 58.8 2.9 26 160-185 4-29 (198)
186 1s96_A Guanylate kinase, GMP k 96.1 0.0034 1.2E-07 59.4 4.0 30 156-185 12-41 (219)
187 1ye8_A Protein THEP1, hypothet 96.1 0.0029 9.8E-08 57.9 3.3 26 162-187 2-27 (178)
188 3cf2_A TER ATPase, transitiona 96.1 0.0034 1.1E-07 70.7 4.4 33 158-190 236-268 (806)
189 3hu3_A Transitional endoplasmi 96.1 0.0048 1.6E-07 65.3 5.3 32 158-189 236-267 (489)
190 3ney_A 55 kDa erythrocyte memb 96.1 0.0038 1.3E-07 58.9 4.0 27 159-185 18-44 (197)
191 2v1u_A Cell division control p 96.1 0.0028 9.6E-08 61.6 3.2 27 158-184 42-68 (387)
192 1hqc_A RUVB; extended AAA-ATPa 96.1 0.0026 8.9E-08 61.1 2.9 31 159-189 37-67 (324)
193 2zan_A Vacuolar protein sortin 96.1 0.004 1.4E-07 64.5 4.5 30 159-188 166-196 (444)
194 3co5_A Putative two-component 96.0 0.0044 1.5E-07 53.9 3.9 25 161-185 28-52 (143)
195 2ce7_A Cell division protein F 96.0 0.0047 1.6E-07 65.5 4.7 32 158-189 47-78 (476)
196 2qby_A CDC6 homolog 1, cell di 96.0 0.0038 1.3E-07 60.5 3.7 28 157-184 42-69 (386)
197 3lnc_A Guanylate kinase, GMP k 96.0 0.0049 1.7E-07 57.2 4.3 26 159-184 26-52 (231)
198 1sxj_C Activator 1 40 kDa subu 96.0 0.0055 1.9E-07 60.3 4.7 28 157-185 44-71 (340)
199 3pvs_A Replication-associated 96.0 0.0054 1.8E-07 64.1 4.9 31 159-189 49-79 (447)
200 1ex7_A Guanylate kinase; subst 95.9 0.0037 1.3E-07 58.3 3.2 23 162-184 3-25 (186)
201 1a5t_A Delta prime, HOLB; zinc 95.9 0.0071 2.4E-07 59.9 5.4 37 152-188 16-52 (334)
202 3aez_A Pantothenate kinase; tr 95.9 0.0047 1.6E-07 61.6 4.1 28 157-184 87-114 (312)
203 1sxj_D Activator 1 41 kDa subu 95.9 0.0061 2.1E-07 59.0 4.8 23 163-185 61-83 (353)
204 1fnn_A CDC6P, cell division co 95.9 0.0099 3.4E-07 58.0 6.3 23 162-184 46-68 (389)
205 2r44_A Uncharacterized protein 95.9 0.0038 1.3E-07 60.8 3.3 28 162-189 48-75 (331)
206 1tue_A Replication protein E1; 95.9 0.013 4.4E-07 56.5 6.9 26 161-186 59-84 (212)
207 3m6a_A ATP-dependent protease 95.9 0.0084 2.9E-07 63.9 6.0 32 158-189 106-137 (543)
208 1iqp_A RFCS; clamp loader, ext 95.8 0.0073 2.5E-07 57.5 4.8 24 162-185 48-71 (327)
209 1sxj_B Activator 1 37 kDa subu 95.8 0.0074 2.5E-07 57.4 4.8 27 158-185 41-67 (323)
210 1znw_A Guanylate kinase, GMP k 95.8 0.0064 2.2E-07 55.7 4.1 27 159-185 19-45 (207)
211 1z6g_A Guanylate kinase; struc 95.8 0.0052 1.8E-07 57.4 3.5 26 159-184 22-47 (218)
212 1xjc_A MOBB protein homolog; s 95.7 0.0059 2E-07 56.4 3.7 25 160-184 4-28 (169)
213 2chq_A Replication factor C sm 95.7 0.0065 2.2E-07 57.7 3.9 27 158-185 37-63 (319)
214 1g8p_A Magnesium-chelatase 38 95.7 0.0067 2.3E-07 58.8 4.0 24 163-186 48-71 (350)
215 1sxj_E Activator 1 40 kDa subu 95.7 0.0053 1.8E-07 59.9 3.3 26 158-184 35-60 (354)
216 4a74_A DNA repair and recombin 95.6 0.0068 2.3E-07 55.0 3.5 26 159-184 24-49 (231)
217 2ehv_A Hypothetical protein PH 95.6 0.0066 2.3E-07 55.7 3.4 23 159-181 29-51 (251)
218 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.0073 2.5E-07 54.4 3.5 26 159-184 22-47 (235)
219 3cr8_A Sulfate adenylyltranfer 95.6 0.0064 2.2E-07 65.6 3.7 42 158-199 367-413 (552)
220 1svm_A Large T antigen; AAA+ f 95.5 0.0092 3.1E-07 61.4 4.4 33 157-189 166-198 (377)
221 2bjv_A PSP operon transcriptio 95.5 0.02 6.7E-07 54.0 6.3 26 160-185 29-54 (265)
222 2z4s_A Chromosomal replication 95.5 0.015 5E-07 60.3 5.9 25 160-184 130-154 (440)
223 2cvh_A DNA repair and recombin 95.4 0.0094 3.2E-07 53.7 3.8 29 158-186 18-46 (220)
224 1c9k_A COBU, adenosylcobinamid 95.4 0.0071 2.4E-07 56.6 2.9 26 162-188 1-26 (180)
225 2wsm_A Hydrogenase expression/ 95.4 0.016 5.4E-07 52.6 5.0 27 159-185 29-55 (221)
226 2ga8_A Hypothetical 39.9 kDa p 95.4 0.0077 2.6E-07 62.1 3.3 29 160-188 24-52 (359)
227 2kjq_A DNAA-related protein; s 95.3 0.0064 2.2E-07 53.9 2.2 26 159-184 35-60 (149)
228 3tqf_A HPR(Ser) kinase; transf 95.3 0.0076 2.6E-07 56.9 2.8 33 161-195 17-49 (181)
229 2hf9_A Probable hydrogenase ni 95.3 0.013 4.3E-07 53.4 4.2 27 158-184 36-62 (226)
230 2dhr_A FTSH; AAA+ protein, hex 95.2 0.014 4.7E-07 62.3 4.9 31 159-189 63-93 (499)
231 1ypw_A Transitional endoplasmi 95.2 0.01 3.5E-07 66.3 4.1 32 158-189 236-267 (806)
232 1np6_A Molybdopterin-guanine d 95.2 0.013 4.3E-07 53.9 3.8 25 160-184 6-30 (174)
233 2r2a_A Uncharacterized protein 95.2 0.013 4.6E-07 54.8 4.0 26 158-183 3-28 (199)
234 1yrb_A ATP(GTP)binding protein 95.1 0.015 5E-07 54.3 4.2 32 157-188 11-44 (262)
235 3pxg_A Negative regulator of g 95.1 0.02 6.9E-07 59.7 5.6 27 158-184 199-225 (468)
236 1n0w_A DNA repair protein RAD5 95.1 0.012 4.2E-07 53.8 3.4 25 159-183 23-47 (243)
237 3p32_A Probable GTPase RV1496/ 95.1 0.048 1.6E-06 54.6 8.0 28 157-184 76-103 (355)
238 3cf2_A TER ATPase, transitiona 95.1 0.011 3.7E-07 66.7 3.5 33 158-190 509-541 (806)
239 1htw_A HI0065; nucleotide-bind 95.0 0.019 6.4E-07 51.8 4.3 27 158-184 31-57 (158)
240 2dr3_A UPF0273 protein PH0284; 95.0 0.013 4.4E-07 53.6 3.3 26 159-184 22-47 (247)
241 2vp4_A Deoxynucleoside kinase; 95.0 0.011 3.6E-07 55.4 2.7 26 158-183 18-43 (230)
242 3kta_A Chromosome segregation 95.0 0.016 5.4E-07 51.3 3.7 27 160-186 26-52 (182)
243 2orw_A Thymidine kinase; TMTK, 94.9 0.016 5.5E-07 53.1 3.6 25 160-184 3-27 (184)
244 1r6b_X CLPA protein; AAA+, N-t 94.9 0.04 1.4E-06 60.2 7.4 31 159-189 486-517 (758)
245 2i3b_A HCR-ntpase, human cance 94.8 0.013 4.5E-07 54.2 2.9 23 162-184 3-25 (189)
246 2eyu_A Twitching motility prot 94.8 0.026 8.7E-07 54.8 5.1 27 158-184 23-49 (261)
247 2qgz_A Helicase loader, putati 94.8 0.016 5.5E-07 57.2 3.7 26 160-185 152-177 (308)
248 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.042 1.4E-06 58.5 7.0 25 162-186 43-67 (500)
249 1w5s_A Origin recognition comp 94.8 0.033 1.1E-06 54.9 5.8 27 158-184 48-76 (412)
250 1moz_A ARL1, ADP-ribosylation 94.7 0.018 6E-07 50.0 3.4 24 158-181 16-39 (183)
251 1cr0_A DNA primase/helicase; R 94.6 0.017 5.8E-07 55.5 3.3 26 159-184 34-59 (296)
252 3pxi_A Negative regulator of g 94.6 0.031 1.1E-06 61.3 5.6 27 158-184 199-225 (758)
253 3tif_A Uncharacterized ABC tra 94.5 0.017 5.7E-07 55.1 2.9 25 160-184 31-55 (235)
254 1z2a_A RAS-related protein RAB 94.5 0.024 8.1E-07 48.0 3.5 24 159-182 4-27 (168)
255 2f1r_A Molybdopterin-guanine d 94.5 0.011 3.9E-07 54.0 1.6 24 161-184 3-26 (171)
256 1nlf_A Regulatory protein REPA 94.4 0.021 7.2E-07 54.7 3.3 26 159-184 29-54 (279)
257 1kao_A RAP2A; GTP-binding prot 94.4 0.027 9.2E-07 47.4 3.5 24 160-183 3-26 (167)
258 2pcj_A ABC transporter, lipopr 94.3 0.018 6.2E-07 54.3 2.7 25 160-184 30-54 (224)
259 2ce2_X GTPase HRAS; signaling 94.3 0.026 8.9E-07 47.3 3.3 23 161-183 4-26 (166)
260 3pxi_A Negative regulator of g 94.3 0.044 1.5E-06 60.1 6.0 26 159-184 519-545 (758)
261 1upt_A ARL1, ADP-ribosylation 94.3 0.036 1.2E-06 47.2 4.2 25 158-182 5-29 (171)
262 1lw7_A Transcriptional regulat 94.3 0.023 8E-07 56.8 3.5 28 161-188 171-198 (365)
263 1ksh_A ARF-like protein 2; sma 94.3 0.03 1E-06 48.9 3.7 25 158-182 16-40 (186)
264 1m2o_B GTP-binding protein SAR 94.2 0.026 9E-07 50.3 3.4 25 158-182 21-45 (190)
265 2qen_A Walker-type ATPase; unk 94.2 0.027 9.3E-07 53.8 3.6 29 161-189 32-60 (350)
266 1ky3_A GTP-binding protein YPT 94.2 0.029 1E-06 48.1 3.5 26 158-183 6-31 (182)
267 3clv_A RAB5 protein, putative; 94.2 0.037 1.3E-06 48.0 4.2 26 158-183 5-30 (208)
268 2onk_A Molybdate/tungstate ABC 94.2 0.026 8.8E-07 54.2 3.4 24 161-184 25-48 (240)
269 2cbz_A Multidrug resistance-as 94.2 0.022 7.6E-07 54.3 2.9 25 160-184 31-55 (237)
270 2lkc_A Translation initiation 94.2 0.035 1.2E-06 47.7 3.9 25 158-182 6-30 (178)
271 2zts_A Putative uncharacterize 94.2 0.03 1E-06 51.2 3.7 25 159-183 29-53 (251)
272 1ypw_A Transitional endoplasmi 94.2 0.013 4.3E-07 65.6 1.3 31 159-189 510-540 (806)
273 2wjg_A FEOB, ferrous iron tran 94.1 0.029 9.9E-07 49.0 3.4 23 160-182 7-29 (188)
274 1nrj_B SR-beta, signal recogni 94.1 0.033 1.1E-06 50.1 3.9 27 158-184 10-36 (218)
275 1u8z_A RAS-related protein RAL 94.1 0.031 1E-06 47.1 3.4 24 160-183 4-27 (168)
276 2ged_A SR-beta, signal recogni 94.1 0.037 1.3E-06 48.6 4.0 27 158-184 46-72 (193)
277 2nzj_A GTP-binding protein REM 94.1 0.032 1.1E-06 47.7 3.5 24 159-182 3-26 (175)
278 2d2e_A SUFC protein; ABC-ATPas 94.0 0.029 1E-06 53.8 3.4 24 160-183 29-52 (250)
279 2wji_A Ferrous iron transport 94.0 0.032 1.1E-06 48.4 3.4 22 161-182 4-25 (165)
280 2hxs_A RAB-26, RAS-related pro 94.0 0.037 1.3E-06 47.6 3.7 25 159-183 5-29 (178)
281 1b0u_A Histidine permease; ABC 94.0 0.025 8.7E-07 54.7 2.9 26 159-184 31-56 (262)
282 1mv5_A LMRA, multidrug resista 93.9 0.026 9E-07 53.8 2.9 26 159-184 27-52 (243)
283 3jvv_A Twitching mobility prot 93.9 0.031 1E-06 56.9 3.5 24 161-184 124-147 (356)
284 1oix_A RAS-related protein RAB 93.9 0.035 1.2E-06 49.7 3.5 24 160-183 29-52 (191)
285 1c1y_A RAS-related protein RAP 93.9 0.038 1.3E-06 46.8 3.5 24 160-183 3-26 (167)
286 2dyk_A GTP-binding protein; GT 93.9 0.038 1.3E-06 46.6 3.6 22 162-183 3-24 (161)
287 1ji0_A ABC transporter; ATP bi 93.9 0.027 9.2E-07 53.7 2.9 25 160-184 32-56 (240)
288 3gfo_A Cobalt import ATP-bindi 93.9 0.026 9E-07 55.4 2.9 25 160-184 34-58 (275)
289 2ewv_A Twitching motility prot 93.9 0.036 1.2E-06 56.4 4.0 26 159-184 135-160 (372)
290 3b85_A Phosphate starvation-in 93.9 0.023 7.9E-07 53.4 2.4 23 161-183 23-45 (208)
291 4g1u_C Hemin import ATP-bindin 93.9 0.027 9.1E-07 54.9 2.9 25 160-184 37-61 (266)
292 1g6h_A High-affinity branched- 93.9 0.027 9.3E-07 54.2 2.9 25 160-184 33-57 (257)
293 2v9p_A Replication protein E1; 93.9 0.035 1.2E-06 55.6 3.8 26 159-184 125-150 (305)
294 2zu0_C Probable ATP-dependent 93.8 0.032 1.1E-06 54.1 3.4 24 160-183 46-69 (267)
295 2f9l_A RAB11B, member RAS onco 93.8 0.04 1.4E-06 49.3 3.8 24 160-183 5-28 (199)
296 2fna_A Conserved hypothetical 93.8 0.045 1.5E-06 52.3 4.3 26 162-187 32-57 (357)
297 2ff7_A Alpha-hemolysin translo 93.8 0.028 9.7E-07 53.9 2.9 25 160-184 35-59 (247)
298 2pze_A Cystic fibrosis transme 93.8 0.029 9.8E-07 53.1 2.9 25 160-184 34-58 (229)
299 2fh5_B SR-beta, signal recogni 93.8 0.039 1.3E-06 49.5 3.6 27 158-184 5-31 (214)
300 1ek0_A Protein (GTP-binding pr 93.7 0.035 1.2E-06 46.9 3.0 23 161-183 4-26 (170)
301 1fzq_A ADP-ribosylation factor 93.7 0.052 1.8E-06 47.9 4.2 26 158-183 14-39 (181)
302 2vhj_A Ntpase P4, P4; non- hyd 93.7 0.037 1.3E-06 56.6 3.6 26 160-185 123-148 (331)
303 2fn4_A P23, RAS-related protei 93.7 0.043 1.5E-06 47.0 3.5 25 159-183 8-32 (181)
304 1z08_A RAS-related protein RAB 93.7 0.038 1.3E-06 47.0 3.1 25 159-183 5-29 (170)
305 2olj_A Amino acid ABC transpor 93.7 0.031 1.1E-06 54.5 2.9 26 159-184 49-74 (263)
306 3bc1_A RAS-related protein RAB 93.6 0.04 1.4E-06 47.7 3.3 24 159-182 10-33 (195)
307 2a5y_B CED-4; apoptosis; HET: 93.6 0.18 6.1E-06 53.2 8.8 24 159-182 151-174 (549)
308 1sgw_A Putative ABC transporte 93.6 0.027 9.3E-07 53.3 2.3 25 160-184 35-59 (214)
309 2ixe_A Antigen peptide transpo 93.6 0.032 1.1E-06 54.3 2.9 25 160-184 45-69 (271)
310 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.035 1.2E-06 47.7 2.8 25 159-183 6-30 (177)
311 2ghi_A Transport protein; mult 93.6 0.033 1.1E-06 53.9 2.9 26 159-184 45-70 (260)
312 2erx_A GTP-binding protein DI- 93.6 0.043 1.5E-06 46.5 3.4 23 160-182 3-25 (172)
313 1g16_A RAS-related protein SEC 93.6 0.043 1.5E-06 46.5 3.3 23 160-182 3-25 (170)
314 1r6b_X CLPA protein; AAA+, N-t 93.6 0.063 2.2E-06 58.6 5.5 27 158-184 205-231 (758)
315 2yz2_A Putative ABC transporte 93.6 0.033 1.1E-06 53.9 2.9 25 160-184 33-57 (266)
316 1z0j_A RAB-22, RAS-related pro 93.6 0.037 1.3E-06 46.9 2.9 24 160-183 6-29 (170)
317 4dsu_A GTPase KRAS, isoform 2B 93.6 0.038 1.3E-06 47.8 3.0 25 159-183 3-27 (189)
318 1vpl_A ABC transporter, ATP-bi 93.5 0.034 1.2E-06 53.9 2.9 25 160-184 41-65 (256)
319 2qi9_C Vitamin B12 import ATP- 93.5 0.035 1.2E-06 53.6 2.9 25 160-184 26-50 (249)
320 1qvr_A CLPB protein; coiled co 93.5 0.038 1.3E-06 61.7 3.6 27 158-184 189-215 (854)
321 2b8t_A Thymidine kinase; deoxy 93.5 0.051 1.8E-06 52.0 4.0 32 159-190 11-45 (223)
322 2ihy_A ABC transporter, ATP-bi 93.5 0.035 1.2E-06 54.5 2.9 25 160-184 47-71 (279)
323 1r2q_A RAS-related protein RAB 93.4 0.037 1.3E-06 46.8 2.7 24 159-182 5-28 (170)
324 2e87_A Hypothetical protein PH 93.4 0.15 5.1E-06 50.9 7.5 25 158-182 165-189 (357)
325 3con_A GTPase NRAS; structural 93.4 0.041 1.4E-06 48.2 3.0 24 160-183 21-44 (190)
326 1f6b_A SAR1; gtpases, N-termin 93.4 0.064 2.2E-06 48.2 4.4 32 150-181 15-46 (198)
327 3sop_A Neuronal-specific septi 93.4 0.043 1.5E-06 53.4 3.4 24 161-184 3-26 (270)
328 4gzl_A RAS-related C3 botulinu 93.4 0.051 1.7E-06 49.0 3.7 26 157-182 27-52 (204)
329 2r8r_A Sensor protein; KDPD, P 93.4 0.081 2.8E-06 51.3 5.3 30 160-189 6-38 (228)
330 1ojl_A Transcriptional regulat 93.3 0.047 1.6E-06 53.6 3.6 26 159-184 24-49 (304)
331 2gza_A Type IV secretion syste 93.3 0.034 1.2E-06 56.2 2.6 25 161-185 176-200 (361)
332 2gj8_A MNME, tRNA modification 93.3 0.052 1.8E-06 47.7 3.5 25 159-183 3-27 (172)
333 1qvr_A CLPB protein; coiled co 93.3 0.067 2.3E-06 59.7 5.2 26 159-184 586-612 (854)
334 2nq2_C Hypothetical ABC transp 93.3 0.039 1.3E-06 53.3 2.8 25 160-184 31-55 (253)
335 2gf0_A GTP-binding protein DI- 93.2 0.065 2.2E-06 47.0 4.0 25 158-182 6-30 (199)
336 1z0f_A RAB14, member RAS oncog 93.2 0.051 1.8E-06 46.4 3.3 25 160-184 15-39 (179)
337 1svi_A GTP-binding protein YSX 93.2 0.056 1.9E-06 47.4 3.6 25 159-183 22-46 (195)
338 2a9k_A RAS-related protein RAL 93.2 0.056 1.9E-06 46.5 3.5 25 159-183 17-41 (187)
339 1vg8_A RAS-related protein RAB 93.2 0.053 1.8E-06 48.0 3.4 26 158-183 6-31 (207)
340 3tw8_B RAS-related protein RAB 93.2 0.046 1.6E-06 46.8 2.9 23 159-181 8-30 (181)
341 3hr8_A Protein RECA; alpha and 93.1 0.048 1.6E-06 55.8 3.5 26 159-184 60-85 (356)
342 2zej_A Dardarin, leucine-rich 93.1 0.046 1.6E-06 48.2 2.9 22 161-182 3-24 (184)
343 3q85_A GTP-binding protein REM 93.1 0.061 2.1E-06 45.8 3.6 22 161-182 3-24 (169)
344 1pui_A ENGB, probable GTP-bind 93.1 0.034 1.2E-06 49.7 2.0 24 158-181 24-47 (210)
345 1ko7_A HPR kinase/phosphatase; 93.1 0.052 1.8E-06 54.9 3.6 35 160-196 144-178 (314)
346 3k1j_A LON protease, ATP-depen 93.1 0.049 1.7E-06 58.5 3.6 27 161-187 61-87 (604)
347 3bwd_D RAC-like GTP-binding pr 93.1 0.07 2.4E-06 46.0 3.9 25 159-183 7-31 (182)
348 2g6b_A RAS-related protein RAB 93.1 0.054 1.8E-06 46.6 3.2 25 159-183 9-33 (180)
349 1p9r_A General secretion pathw 93.1 0.096 3.3E-06 54.5 5.6 27 159-185 166-192 (418)
350 1m7b_A RND3/RHOE small GTP-bin 93.0 0.056 1.9E-06 47.5 3.3 25 159-183 6-30 (184)
351 2efe_B Small GTP-binding prote 93.0 0.053 1.8E-06 46.7 3.1 24 159-182 11-34 (181)
352 2www_A Methylmalonic aciduria 93.0 0.08 2.7E-06 53.2 4.8 25 160-184 74-98 (349)
353 2pjz_A Hypothetical protein ST 93.0 0.046 1.6E-06 53.3 2.9 25 160-184 30-54 (263)
354 2oil_A CATX-8, RAS-related pro 93.0 0.058 2E-06 47.5 3.3 25 159-183 24-48 (193)
355 1xx6_A Thymidine kinase; NESG, 93.0 0.1 3.5E-06 48.6 5.1 32 159-190 7-41 (191)
356 2gno_A DNA polymerase III, gam 92.9 0.082 2.8E-06 52.4 4.6 25 160-184 18-42 (305)
357 3fvq_A Fe(3+) IONS import ATP- 92.9 0.051 1.7E-06 55.7 3.2 24 161-184 31-54 (359)
358 3kkq_A RAS-related protein M-R 92.9 0.07 2.4E-06 46.3 3.6 24 160-183 18-41 (183)
359 1pzn_A RAD51, DNA repair and r 92.9 0.06 2E-06 54.2 3.6 26 159-184 130-155 (349)
360 2y8e_A RAB-protein 6, GH09086P 92.8 0.054 1.8E-06 46.3 2.8 23 160-182 14-36 (179)
361 2bme_A RAB4A, RAS-related prot 92.8 0.054 1.8E-06 47.0 2.8 25 159-183 9-33 (186)
362 2bov_A RAla, RAS-related prote 92.8 0.074 2.5E-06 46.9 3.8 24 160-183 14-37 (206)
363 2p5s_A RAS and EF-hand domain 92.8 0.078 2.7E-06 47.2 3.9 26 158-183 26-51 (199)
364 2atv_A RERG, RAS-like estrogen 92.8 0.083 2.8E-06 46.8 4.0 25 159-183 27-51 (196)
365 3q72_A GTP-binding protein RAD 92.8 0.061 2.1E-06 45.6 3.0 21 161-181 3-23 (166)
366 1zj6_A ADP-ribosylation factor 92.7 0.077 2.6E-06 46.5 3.7 25 158-182 14-38 (187)
367 1z47_A CYSA, putative ABC-tran 92.7 0.061 2.1E-06 55.0 3.4 25 160-184 41-65 (355)
368 1r8s_A ADP-ribosylation factor 92.7 0.082 2.8E-06 44.8 3.7 22 162-183 2-23 (164)
369 2yyz_A Sugar ABC transporter, 92.6 0.062 2.1E-06 55.0 3.4 25 160-184 29-53 (359)
370 3bh0_A DNAB-like replicative h 92.6 0.074 2.5E-06 52.5 3.9 27 158-184 66-92 (315)
371 3tkl_A RAS-related protein RAB 92.6 0.068 2.3E-06 46.7 3.3 25 159-183 15-39 (196)
372 2qm8_A GTPase/ATPase; G protei 92.6 0.086 2.9E-06 52.8 4.4 27 158-184 53-79 (337)
373 2zr9_A Protein RECA, recombina 92.6 0.059 2E-06 54.5 3.3 26 159-184 60-85 (349)
374 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.07 2.4E-06 46.0 3.3 23 160-182 5-27 (186)
375 2it1_A 362AA long hypothetical 92.6 0.062 2.1E-06 55.0 3.4 25 160-184 29-53 (362)
376 3rlf_A Maltose/maltodextrin im 92.6 0.062 2.1E-06 55.5 3.4 25 160-184 29-53 (381)
377 1zcb_A G alpha I/13; GTP-bindi 92.6 0.072 2.5E-06 54.3 3.8 27 158-184 31-57 (362)
378 3t1o_A Gliding protein MGLA; G 92.6 0.086 2.9E-06 45.8 3.8 25 160-184 14-38 (198)
379 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.042 1.4E-06 55.0 2.0 24 162-185 173-196 (330)
380 2p67_A LAO/AO transport system 92.5 0.19 6.5E-06 50.1 6.7 28 157-184 53-80 (341)
381 1u94_A RECA protein, recombina 92.5 0.068 2.3E-06 54.4 3.5 26 159-184 62-87 (356)
382 1z06_A RAS-related protein RAB 92.5 0.08 2.7E-06 46.5 3.5 25 159-183 19-43 (189)
383 3t5g_A GTP-binding protein RHE 92.5 0.056 1.9E-06 46.8 2.5 24 159-182 5-28 (181)
384 3reg_A RHO-like small GTPase; 92.5 0.07 2.4E-06 47.1 3.1 26 158-183 21-46 (194)
385 1zd9_A ADP-ribosylation factor 92.5 0.073 2.5E-06 47.0 3.2 25 159-183 21-45 (188)
386 1v5w_A DMC1, meiotic recombina 92.5 0.088 3E-06 52.7 4.2 26 158-183 120-145 (343)
387 1g29_1 MALK, maltose transport 92.4 0.068 2.3E-06 54.8 3.4 25 160-184 29-53 (372)
388 2i1q_A DNA repair and recombin 92.4 0.069 2.4E-06 52.2 3.4 26 158-183 96-121 (322)
389 1v43_A Sugar-binding transport 92.4 0.068 2.3E-06 54.9 3.4 25 160-184 37-61 (372)
390 2z43_A DNA repair and recombin 92.4 0.072 2.5E-06 52.6 3.5 26 159-184 106-131 (324)
391 3pqc_A Probable GTP-binding pr 92.4 0.086 2.9E-06 45.8 3.6 23 161-183 24-46 (195)
392 1knx_A Probable HPR(Ser) kinas 92.4 0.063 2.2E-06 54.2 3.1 35 160-196 147-181 (312)
393 2bbs_A Cystic fibrosis transme 92.4 0.057 1.9E-06 53.4 2.7 25 160-184 64-88 (290)
394 3oes_A GTPase rhebl1; small GT 92.4 0.076 2.6E-06 47.4 3.3 24 159-182 23-46 (201)
395 2yv5_A YJEQ protein; hydrolase 92.4 0.1 3.5E-06 51.4 4.5 25 160-185 165-189 (302)
396 3upu_A ATP-dependent DNA helic 92.3 0.17 5.8E-06 52.3 6.2 23 162-184 47-69 (459)
397 3c5c_A RAS-like protein 12; GD 92.3 0.087 3E-06 46.7 3.5 25 159-183 20-44 (187)
398 3cph_A RAS-related protein SEC 92.3 0.099 3.4E-06 46.5 3.9 24 159-182 19-42 (213)
399 1f2t_A RAD50 ABC-ATPase; DNA d 92.3 0.096 3.3E-06 46.3 3.8 25 160-184 23-47 (149)
400 3lxx_A GTPase IMAP family memb 92.3 0.079 2.7E-06 49.2 3.4 24 159-182 28-51 (239)
401 1x3s_A RAS-related protein RAB 92.2 0.083 2.8E-06 46.0 3.3 24 160-183 15-38 (195)
402 2cxx_A Probable GTP-binding pr 92.2 0.08 2.7E-06 45.9 3.1 22 162-183 3-24 (190)
403 2b6h_A ADP-ribosylation factor 92.2 0.094 3.2E-06 46.8 3.7 24 158-181 27-50 (192)
404 2h17_A ADP-ribosylation factor 92.2 0.078 2.7E-06 46.4 3.0 24 159-182 20-43 (181)
405 2x77_A ADP-ribosylation factor 92.2 0.092 3.2E-06 46.0 3.5 24 158-181 20-43 (189)
406 3d31_A Sulfate/molybdate ABC t 92.2 0.056 1.9E-06 55.0 2.4 25 160-184 26-50 (348)
407 3ihw_A Centg3; RAS, centaurin, 92.1 0.099 3.4E-06 46.4 3.7 25 159-183 19-43 (184)
408 3nh6_A ATP-binding cassette SU 92.1 0.046 1.6E-06 54.6 1.6 25 160-184 80-104 (306)
409 3lda_A DNA repair protein RAD5 92.1 0.074 2.5E-06 55.0 3.2 24 160-183 178-201 (400)
410 2gf9_A RAS-related protein RAB 92.0 0.09 3.1E-06 46.2 3.3 23 160-182 22-44 (189)
411 2iwr_A Centaurin gamma 1; ANK 92.0 0.072 2.5E-06 46.0 2.6 24 160-183 7-30 (178)
412 3tui_C Methionine import ATP-b 92.0 0.083 2.8E-06 54.4 3.4 25 160-184 54-78 (366)
413 2q3h_A RAS homolog gene family 92.0 0.11 3.7E-06 46.0 3.8 24 159-182 19-42 (201)
414 3gd7_A Fusion complex of cysti 91.9 0.079 2.7E-06 54.7 3.2 25 160-184 47-71 (390)
415 2oap_1 GSPE-2, type II secreti 91.9 0.066 2.2E-06 57.1 2.7 26 160-185 260-285 (511)
416 2fg5_A RAB-22B, RAS-related pr 91.9 0.083 2.8E-06 46.8 2.9 25 159-183 22-46 (192)
417 1z6t_A APAF-1, apoptotic prote 91.9 0.1 3.4E-06 54.7 3.9 25 158-182 145-169 (591)
418 4bas_A ADP-ribosylation factor 91.9 0.094 3.2E-06 46.0 3.2 23 159-181 16-38 (199)
419 2a5j_A RAS-related protein RAB 91.8 0.096 3.3E-06 46.2 3.3 24 160-183 21-44 (191)
420 3izq_1 HBS1P, elongation facto 91.8 0.13 4.3E-06 56.0 4.8 32 153-184 160-191 (611)
421 1oxx_K GLCV, glucose, ABC tran 91.7 0.055 1.9E-06 55.1 1.7 25 160-184 31-55 (353)
422 3dz8_A RAS-related protein RAB 91.7 0.12 4.2E-06 45.5 3.8 25 160-184 23-47 (191)
423 2xtp_A GTPase IMAP family memb 91.7 0.11 3.8E-06 48.7 3.6 25 159-183 21-45 (260)
424 2bcg_Y Protein YP2, GTP-bindin 91.7 0.095 3.3E-06 46.7 3.1 24 159-182 7-30 (206)
425 2j1l_A RHO-related GTP-binding 91.6 0.1 3.5E-06 47.4 3.3 24 159-182 33-56 (214)
426 1zbd_A Rabphilin-3A; G protein 91.6 0.12 4.1E-06 45.8 3.6 23 160-182 8-30 (203)
427 3k53_A Ferrous iron transport 91.6 0.11 3.8E-06 49.5 3.6 23 161-183 4-26 (271)
428 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.081 2.8E-06 55.7 2.8 25 160-184 138-162 (460)
429 3f9v_A Minichromosome maintena 91.5 0.045 1.5E-06 59.2 0.9 27 161-187 328-354 (595)
430 2qu8_A Putative nucleolar GTP- 91.5 0.13 4.3E-06 47.2 3.8 24 159-182 28-51 (228)
431 3end_A Light-independent proto 91.5 0.18 6.2E-06 48.6 5.0 33 158-190 39-74 (307)
432 2h57_A ADP-ribosylation factor 91.5 0.095 3.3E-06 46.1 2.8 25 159-183 20-44 (190)
433 3gee_A MNME, tRNA modification 91.4 0.34 1.2E-05 51.1 7.5 24 159-182 232-255 (476)
434 1gwn_A RHO-related GTP-binding 91.3 0.12 4E-06 47.1 3.3 25 159-183 27-51 (205)
435 2r6a_A DNAB helicase, replicat 91.3 0.12 4.2E-06 53.4 3.9 26 159-184 202-227 (454)
436 2o52_A RAS-related protein RAB 91.3 0.098 3.3E-06 46.9 2.8 24 159-182 24-47 (200)
437 3czq_A Putative polyphosphate 91.3 0.36 1.2E-05 48.7 7.1 58 121-187 56-113 (304)
438 3cbq_A GTP-binding protein REM 91.2 0.099 3.4E-06 47.0 2.7 22 160-181 23-44 (195)
439 3qks_A DNA double-strand break 91.2 0.12 4E-06 47.9 3.2 28 159-186 22-49 (203)
440 1nij_A Hypothetical protein YJ 91.1 0.085 2.9E-06 52.1 2.4 24 161-184 5-28 (318)
441 1p6x_A Thymidine kinase; P-loo 91.1 0.082 2.8E-06 53.7 2.3 29 159-187 6-34 (334)
442 1u0l_A Probable GTPase ENGC; p 91.1 0.098 3.4E-06 51.3 2.7 24 161-184 170-193 (301)
443 3ug7_A Arsenical pump-driving 91.0 0.32 1.1E-05 48.8 6.4 38 157-194 23-64 (349)
444 2fu5_C RAS-related protein RAB 91.0 0.07 2.4E-06 46.3 1.4 22 160-181 8-29 (183)
445 2fv8_A H6, RHO-related GTP-bin 91.0 0.13 4.3E-06 46.3 3.1 24 159-182 24-47 (207)
446 2ew1_A RAS-related protein RAB 90.9 0.12 4E-06 47.0 2.9 25 159-183 25-49 (201)
447 3vkg_A Dynein heavy chain, cyt 90.8 0.83 2.8E-05 58.5 11.1 64 116-185 862-931 (3245)
448 3iqw_A Tail-anchored protein t 90.8 0.2 7E-06 50.4 4.8 37 157-193 13-53 (334)
449 3llu_A RAS-related GTP-binding 90.7 0.13 4.4E-06 45.8 3.0 24 159-182 19-42 (196)
450 2il1_A RAB12; G-protein, GDP, 90.7 0.15 5.2E-06 45.2 3.4 22 161-182 27-48 (192)
451 1xp8_A RECA protein, recombina 90.6 0.13 4.4E-06 52.6 3.3 26 159-184 73-98 (366)
452 2rcn_A Probable GTPase ENGC; Y 90.6 0.14 4.7E-06 52.5 3.4 26 160-185 215-240 (358)
453 3zq6_A Putative arsenical pump 90.6 0.2 6.9E-06 49.5 4.5 35 160-194 14-52 (324)
454 2j0v_A RAC-like GTP-binding pr 90.6 0.16 5.6E-06 45.3 3.5 24 159-182 8-31 (212)
455 3th5_A RAS-related C3 botulinu 90.0 0.048 1.6E-06 48.7 0.0 26 157-182 27-52 (204)
456 3lxw_A GTPase IMAP family memb 90.6 0.15 5.1E-06 48.3 3.4 24 159-182 20-43 (247)
457 2gco_A H9, RHO-related GTP-bin 90.6 0.15 5E-06 45.6 3.2 24 160-183 25-48 (201)
458 2f7s_A C25KG, RAS-related prot 90.6 0.17 5.8E-06 45.4 3.6 24 160-183 25-48 (217)
459 1tf7_A KAIC; homohexamer, hexa 90.5 0.13 4.5E-06 54.2 3.2 22 159-180 38-59 (525)
460 2atx_A Small GTP binding prote 90.4 0.17 6E-06 44.4 3.5 24 160-183 18-41 (194)
461 4b3f_X DNA-binding protein smu 90.4 0.14 4.9E-06 55.2 3.5 39 162-200 207-254 (646)
462 2hup_A RAS-related protein RAB 90.4 0.14 4.8E-06 46.0 2.9 24 160-183 29-52 (201)
463 2q6t_A DNAB replication FORK h 90.4 0.16 5.4E-06 52.4 3.6 26 159-184 199-224 (444)
464 3e1s_A Exodeoxyribonuclease V, 90.4 0.16 5.3E-06 54.8 3.7 31 160-190 204-237 (574)
465 4akg_A Glutathione S-transfera 90.3 0.55 1.9E-05 59.3 8.9 57 122-184 885-947 (2695)
466 1h65_A Chloroplast outer envel 90.3 0.22 7.4E-06 47.4 4.3 24 159-182 38-61 (270)
467 1yqt_A RNAse L inhibitor; ATP- 90.2 0.15 5.2E-06 54.4 3.4 25 160-184 47-71 (538)
468 2cjw_A GTP-binding protein GEM 90.2 0.19 6.3E-06 45.1 3.5 24 160-183 6-29 (192)
469 4a1f_A DNAB helicase, replicat 90.1 0.16 5.3E-06 51.6 3.3 26 159-184 45-70 (338)
470 1tf7_A KAIC; homohexamer, hexa 90.0 0.15 5.3E-06 53.6 3.3 26 159-184 280-305 (525)
471 3kjh_A CO dehydrogenase/acetyl 90.0 0.19 6.3E-06 45.8 3.4 28 162-189 2-32 (254)
472 3sfz_A APAF-1, apoptotic pepti 90.0 0.24 8.2E-06 55.4 5.0 26 158-183 145-170 (1249)
473 1tq4_A IIGP1, interferon-induc 89.9 0.18 6.3E-06 52.4 3.7 26 159-184 68-93 (413)
474 3q3j_B RHO-related GTP-binding 89.8 0.24 8.1E-06 45.1 3.9 24 160-183 27-50 (214)
475 4dhe_A Probable GTP-binding pr 89.8 0.11 3.9E-06 46.7 1.8 24 160-183 29-52 (223)
476 2qag_B Septin-6, protein NEDD5 89.8 0.15 5.3E-06 53.4 3.0 25 159-183 39-65 (427)
477 4djt_A GTP-binding nuclear pro 89.8 0.083 2.8E-06 47.5 0.8 24 158-181 9-32 (218)
478 3bgw_A DNAB-like replicative h 89.7 0.17 5.7E-06 52.8 3.2 26 159-184 196-221 (444)
479 2aka_B Dynamin-1; fusion prote 89.7 0.36 1.2E-05 45.6 5.3 24 160-183 26-49 (299)
480 3geh_A MNME, tRNA modification 89.6 0.4 1.4E-05 50.4 6.0 25 159-183 223-247 (462)
481 3a1s_A Iron(II) transport prot 89.6 0.17 5.9E-06 48.4 3.0 23 160-182 5-27 (258)
482 2qnr_A Septin-2, protein NEDD5 89.5 0.19 6.4E-06 49.4 3.2 23 160-182 18-40 (301)
483 3b5x_A Lipid A export ATP-bind 89.5 0.17 5.8E-06 54.1 3.1 25 160-184 369-393 (582)
484 3io5_A Recombination and repai 89.5 0.19 6.4E-06 51.5 3.3 23 162-184 30-52 (333)
485 3cpj_B GTP-binding protein YPT 89.4 0.25 8.5E-06 45.0 3.7 24 160-183 13-36 (223)
486 3b1v_A Ferrous iron uptake tra 89.4 0.23 7.9E-06 48.2 3.7 23 160-182 3-25 (272)
487 1ega_A Protein (GTP-binding pr 89.3 0.17 5.9E-06 49.5 2.8 23 160-182 8-30 (301)
488 3euj_A Chromosome partition pr 89.2 0.2 6.9E-06 53.3 3.4 24 161-184 30-53 (483)
489 1ihu_A Arsenical pump-driving 89.2 0.33 1.1E-05 51.6 5.1 37 158-194 6-46 (589)
490 2yc2_C IFT27, small RAB-relate 89.1 0.09 3.1E-06 46.3 0.6 23 160-182 20-42 (208)
491 3qf7_A RAD50; ABC-ATPase, ATPa 89.1 0.24 8.3E-06 50.0 3.8 25 160-184 23-47 (365)
492 1yqt_A RNAse L inhibitor; ATP- 89.0 0.21 7.2E-06 53.3 3.4 24 161-184 313-336 (538)
493 3ozx_A RNAse L inhibitor; ATP 89.0 0.18 6.1E-06 54.0 2.9 20 162-181 296-315 (538)
494 3b60_A Lipid A export ATP-bind 88.9 0.19 6.4E-06 53.8 2.9 24 161-184 370-393 (582)
495 3llm_A ATP-dependent RNA helic 88.9 0.57 1.9E-05 43.5 5.9 20 161-180 77-96 (235)
496 2woo_A ATPase GET3; tail-ancho 88.9 0.38 1.3E-05 47.8 5.0 37 158-194 17-57 (329)
497 3cio_A ETK, tyrosine-protein k 88.9 0.68 2.3E-05 45.4 6.7 33 158-190 102-138 (299)
498 3qkt_A DNA double-strand break 88.9 0.26 9E-06 48.9 3.8 26 159-184 22-47 (339)
499 1w1w_A Structural maintenance 88.8 0.27 9.4E-06 50.2 4.0 28 159-186 25-52 (430)
500 2j9r_A Thymidine kinase; TK1, 88.8 0.45 1.5E-05 45.7 5.2 32 159-190 27-61 (214)
No 1
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.79 E-value=1.7e-08 Score=88.88 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=58.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH-hcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ-RLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~-~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+|.+|+|+|+|||||||+|+.|++ .+|+.++ .+|.+++.+.+.. ..|...+. .+. . ..+...
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i-~~d~~r~~~~~~~-------~~~~~~~~-~~~--~------~~~~~~ 63 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNI-NRDDYRQSIMAHE-------ERDEYKYT-KKK--E------GIVTGM 63 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEE-CHHHHHHHHTTSC-------CGGGCCCC-HHH--H------HHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEe-cHHHHHHHhhCCC-------ccchhhhc-hhh--h------hHHHHH
Confidence 478999999999999999999998 6888764 6899988764311 11211111 110 0 112223
Q ss_pred HHHHHHHHh---hCCCcEEEEcccCCcc
Q 010885 238 LAGDLKKAM---KDGKPIIIEGIHLDPS 262 (498)
Q Consensus 238 L~~~IekaL---~eG~sVIVEGthL~P~ 262 (498)
+...+..++ ..|..+|+||+++.+.
T Consensus 64 ~~~~~~~~l~~~~~g~~vi~d~~~~~~~ 91 (181)
T 1ly1_A 64 QFDTAKSILYGGDSVKGVIISDTNLNPE 91 (181)
T ss_dssp HHHHHHHHHTSCSSCCEEEECSCCCSHH
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCCCHH
Confidence 445566777 8899999999887654
No 2
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.76 E-value=2.7e-08 Score=88.93 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=57.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
.+|.+|+|+|+|||||||+++.|++++|+.++ ..|.+++.+..... +. .+....... ...+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i-~~D~~~~~~~~~~~--------~~-----~~~~~~~~~---~~~~~~ 65 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLL-SKDAFKEVMFDGLG--------WS-----DREWSRRVG---ATAIMM 65 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEE-EHHHHHHHHHHHHC--------CC-----SHHHHHHHH---HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEe-cHHHHHHHHHHhcC--------cc-----chHHHHHhh---HHHHHH
Confidence 46889999999999999999999999999875 57888876543110 00 011111111 112334
Q ss_pred HHHHHHHHhhCCCcEEEEccc
Q 010885 238 LAGDLKKAMKDGKPIIIEGIH 258 (498)
Q Consensus 238 L~~~IekaL~eG~sVIVEGth 258 (498)
+...+...+..|..||+|+.+
T Consensus 66 ~~~~~~~~l~~g~~vi~d~~~ 86 (193)
T 2rhm_A 66 LYHTAATILQSGQSLIMESNF 86 (193)
T ss_dssp HHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHhCCCeEEEecCC
Confidence 555566678899999999976
No 3
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.76 E-value=3.7e-08 Score=96.81 Aligned_cols=112 Identities=15% Similarity=0.265 Sum_probs=69.5
Q ss_pred ccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEcchhHHH
Q 010885 120 LDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL--NLPNVLQTDMVYE 197 (498)
Q Consensus 120 ~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~L--gl~~Vi~tD~ire 197 (498)
..++.+++...+.+.+... ........+|.+|+|+|+|||||||+|+.|+.++ ++.+ ++.|.+|.
T Consensus 5 ~~~s~~~~~~~~~~~~~~~------------l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~-Is~D~~R~ 71 (287)
T 1gvn_B 5 VNFTDKQFENRLNDNLEEL------------IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV-IDNDTFKQ 71 (287)
T ss_dssp TCCCHHHHHHHHHHHHHHH------------HTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEE-ECTHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHH------------hccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEE-EechHhHH
Confidence 3456677777666666542 1111234568999999999999999999999998 5554 57888885
Q ss_pred HHhcCCCCCCCCCccccccccChHHHHHHHhhcc----hhHHHH-HHHHHHHHhhCCCcEEEEcccCCcc
Q 010885 198 LLRTSTDAPLSSSPVWARNFSSSEELVTEFVREC----RIVRKG-LAGDLKKAMKDGKPIIIEGIHLDPS 262 (498)
Q Consensus 198 ~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~----~~V~eg-L~~~IekaL~eG~sVIVEGthL~P~ 262 (498)
.+.+ + ..+...|.... ...+.. ....+..++..|.+||+|+++..+.
T Consensus 72 ~~~~-----------~-------~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~~vIld~~~~~~~ 123 (287)
T 1gvn_B 72 QHPN-----------F-------DELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTD 123 (287)
T ss_dssp TSTT-----------H-------HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCCCSH
T ss_pred hchh-----------h-------HHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCCeEEEECCCCCHH
Confidence 3211 0 00111111110 001111 3345566778999999999997765
No 4
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.72 E-value=1.9e-08 Score=95.14 Aligned_cols=82 Identities=17% Similarity=0.344 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH-HH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LA 239 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg-L~ 239 (498)
++|+|.|||||||+|.|..|++++|++++..+|.+|+.+..... ....+..|......|.+. +.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~---------------lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTP---------------LGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCH---------------HHHHHHHHHHHTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcCh---------------hhhhHHHHHhcCCcCCHHHHH
Confidence 57999999999999999999999999999888999987654210 112344555444444333 45
Q ss_pred HHHHHHhhCCCcEEEEcc
Q 010885 240 GDLKKAMKDGKPIIIEGI 257 (498)
Q Consensus 240 ~~IekaL~eG~sVIVEGt 257 (498)
..+...+.+...+|+||.
T Consensus 66 ~lv~~~l~~~~~~ilDGf 83 (206)
T 3sr0_A 66 ALIEEVFPKHGNVIFDGF 83 (206)
T ss_dssp HHHHHHCCSSSCEEEESC
T ss_pred HHHHHhhccCCceEecCC
Confidence 566677777778999993
No 5
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.68 E-value=5.1e-08 Score=93.31 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=58.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcch----
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECR---- 232 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~---- 232 (498)
.++|.+|+|.|+|||||+|.|..|++++|+.++...|.+|+.+.... + ....+..|.....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t--~-------------lg~~~~~~~~~G~lVpd 90 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGS--P-------------KGKELKAMMERGELVPL 90 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCC--H-------------HHHHHHHHHHHTCCCCH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCC--c-------------hHHHHHHHHhcCCCCCH
Confidence 35789999999999999999999999999999888899998765311 0 1123344443332
Q ss_pred -hHHHHHHHHHHHHhhCCCcEEEEc
Q 010885 233 -IVRKGLAGDLKKAMKDGKPIIIEG 256 (498)
Q Consensus 233 -~V~egL~~~IekaL~eG~sVIVEG 256 (498)
.+..-+...+.+....+..+|+||
T Consensus 91 e~~~~lv~~~l~~~~~~~~g~ilDG 115 (217)
T 3umf_A 91 EVVLALLKEAMIKLVDKNCHFLIDG 115 (217)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEET
T ss_pred HHHHHHHHHHHhhccccccCccccc
Confidence 223333344444444556699999
No 6
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.63 E-value=8.7e-08 Score=84.91 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE-cchhHHHHHhcCCCCCCCCCcccccc--ccChHHHHHHHhhcchhHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL-QTDMVYELLRTSTDAPLSSSPVWARN--FSSSEELVTEFVRECRIVR 235 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi-~tD~ire~mr~~~~~pLss~~~W~~~--f~s~EelI~~f~~q~~~V~ 235 (498)
+|.+|+|+|+|||||||+|+.|+++++..++. ..|.+++.+.+....+. ..-.+... ....+. |. .+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~----~~~ 72 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAE-GGIEFDADGGVSIGPE----FR----ALE 72 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTST-TSEEECTTSCEEECHH----HH----HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccch-hhccccCCCccccchh----HH----HHH
Confidence 46799999999999999999999999987653 57888765332110000 00000000 000111 11 122
Q ss_pred HHHHHHHHHHhhCCCcEEEEcccCC
Q 010885 236 KGLAGDLKKAMKDGKPIIIEGIHLD 260 (498)
Q Consensus 236 egL~~~IekaL~eG~sVIVEGthL~ 260 (498)
..+...+...+..|.+||++++++.
T Consensus 73 ~~~~~~~~~~~~~g~~vi~~~~~~~ 97 (178)
T 1qhx_A 73 GAWAEGVVAMARAGARIIIDDVFLG 97 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHhcCCeEEEEecccc
Confidence 3344445556678899999997763
No 7
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.63 E-value=5.9e-08 Score=83.86 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~ 201 (498)
++|+|+|+|||||||+|+.| +++|+.++..+|.+++.+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~ 41 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSI 41 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHh
Confidence 48999999999999999999 99999988777888876543
No 8
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.61 E-value=1.4e-07 Score=84.40 Aligned_cols=85 Identities=16% Similarity=0.294 Sum_probs=55.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhc-----ch
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRE-----CR 232 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q-----~~ 232 (498)
.+|.+|+|.|+|||||||+|+.|++++|+.++..+|.++....... .+. ..+..+... ..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~--------~~~-------~~i~~~~~~g~~~~~~ 71 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGS--------ARG-------KKLSEIMEKGQLVPLE 71 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTC--------HHH-------HHHHHHHHTTCCCCHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCC--------hHH-------HHHHHHHHcCCcCCHH
Confidence 4677999999999999999999999999998766666776543210 000 011111100 11
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcc
Q 010885 233 IVRKGLAGDLKKAMKDGKPIIIEGI 257 (498)
Q Consensus 233 ~V~egL~~~IekaL~eG~sVIVEGt 257 (498)
.+...+...+...+..|..+|+||.
T Consensus 72 ~~~~~~~~~i~~~~~~~~~vi~d~~ 96 (196)
T 2c95_A 72 TVLDMLRDAMVAKVNTSKGFLIDGY 96 (196)
T ss_dssp HHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred HHHHHHHHHHHhccccCCcEEEeCC
Confidence 2233345556666778999999985
No 9
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.58 E-value=1.8e-07 Score=83.92 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
+|++|+|+|+|||||||+|+.|++++|+.++..+|.+++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~ 51 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREEL 51 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHH
Confidence 46799999999999999999999999999876666667654
No 10
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.58 E-value=2.5e-07 Score=82.16 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
+|++|+|.|+|||||||+|+.|++++|+.++..+|.+++..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~ 42 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER 42 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHH
Confidence 47899999999999999999999999999876566666654
No 11
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.56 E-value=3.7e-07 Score=82.90 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=36.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
..+|++|+|+|++||||||+|+.|++++|+.++..+|.+++.+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~ 54 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQ 54 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHH
Confidence 4567899999999999999999999999998876666666653
No 12
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.54 E-value=1.8e-07 Score=89.12 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=39.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
..+|++|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~ 69 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAE 69 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHh
Confidence 35789999999999999999999999999999877788888654
No 13
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.54 E-value=3.8e-07 Score=80.82 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=36.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.+|.+|+|+|+|||||||+|+.|++++|+.++..+|.+++.+.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~ 46 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQ 46 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHh
Confidence 3578999999999999999999999999998765566776543
No 14
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.54 E-value=5e-07 Score=86.30 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=66.4
Q ss_pred cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC-eEEcchhHHHHH
Q 010885 121 DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP-NVLQTDMVYELL 199 (498)
Q Consensus 121 ~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~-~Vi~tD~ire~m 199 (498)
..+.+++...+..++.. +........+|.+|+|+|+|||||||+|+.|+.+++.. .++.+|.+|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~ 72 (253)
T 2p5t_B 5 DYTDSEFKHALARNLRS------------LTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQH 72 (253)
T ss_dssp CCCHHHHHHHHHHHHHH------------HHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTS
T ss_pred hcCHHHHHHHHHHHHHH------------HHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhc
Confidence 45566666555554332 22222334578999999999999999999999999743 445788887642
Q ss_pred hcC--CCCCCCCCccccccccChHHHHHHHhhcchhHHHHHHHHHHHHhhCCCcEEEEcccCCcc
Q 010885 200 RTS--TDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPS 262 (498)
Q Consensus 200 r~~--~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL~~~IekaL~eG~sVIVEGthL~P~ 262 (498)
... ...+. ..+ ..+....+. ...+...+..++..|..+|+||++..+.
T Consensus 73 ~~~~~i~~~~---g~~------~~~~~~~~~------~~~~~~~~~~~~~~g~~vVid~~~~~~~ 122 (253)
T 2p5t_B 73 PHYLELQQEY---GKD------SVEYTKDFA------GKMVESLVTKLSSLGYNLLIEGTLRTVD 122 (253)
T ss_dssp TTHHHHHTTC---SST------THHHHHHHH------HHHHHHHHHHHHHTTCCEEEECCTTSSH
T ss_pred hhHHHHHHHc---Cch------HHHHhhHHH------HHHHHHHHHHHHhcCCCEEEeCCCCCHH
Confidence 110 00000 000 111111110 1112344555667888999999876554
No 15
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.53 E-value=1.9e-07 Score=86.41 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
++|++|+|.|+|||||||+|+.|++++|+.++..+|.+++.+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~ 44 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIA 44 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHH
Confidence 4578999999999999999999999999998766677787544
No 16
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.51 E-value=2.9e-07 Score=84.36 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~ 201 (498)
+.|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~ 41 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKN 41 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhc
Confidence 36899999999999999999999999998777888887653
No 17
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.51 E-value=3.4e-07 Score=83.34 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=37.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
..+|++|+|.|+|||||||+|+.|++++|++++..+|.+++.+.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~ 60 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIE 60 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHH
Confidence 45788999999999999999999999999998766677787544
No 18
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.50 E-value=3.2e-07 Score=84.29 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~ 201 (498)
.|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~ 41 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKE 41 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc
Confidence 6899999999999999999999999998777888887653
No 19
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.50 E-value=2.6e-07 Score=89.03 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~eg 237 (498)
+|.+|+|+|+|||||||+|+.|++++ |+.+ +.+|.+|+.+.... ..|...+. .+ . . ..+...
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~~-i~~D~~r~~~~~~~-------~g~~~~~~-~~-~-~------~~~~~~ 63 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDYRQSIMAHE-------ERDEYKYT-KK-K-E------GIVTGM 63 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEE-ECHHHHHHHHTTSC-------CCC---CC-HH-H-H------HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCcEE-ecccHHHHHhccCC-------cccccccc-hh-h-h------hHHHHH
Confidence 47899999999999999999999985 8876 57888888764311 11211111 00 0 0 111223
Q ss_pred HHHHHHHHh---hCCCcEEEEcccCCccc
Q 010885 238 LAGDLKKAM---KDGKPIIIEGIHLDPSI 263 (498)
Q Consensus 238 L~~~IekaL---~eG~sVIVEGthL~P~l 263 (498)
+...+..++ ..|..+|+||+++.+..
T Consensus 64 ~~~~~~~~l~~~~~g~~vi~d~~~~~~~~ 92 (301)
T 1ltq_A 64 QFDTAKSILYGGDSVKGVIISDTNLNPER 92 (301)
T ss_dssp HHHHHHHHTTSCTTCCEEEECSCCCCHHH
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCHHH
Confidence 445566778 88999999999987643
No 20
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.48 E-value=2.1e-07 Score=83.00 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=35.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
++++|+|.|+|||||||+++.|++++|+.++..+|.+++.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~ 44 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVA 44 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHH
Confidence 467899999999999999999999999998655567776543
No 21
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.47 E-value=4.1e-07 Score=80.74 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQ 191 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~ 191 (498)
+|++|+|.|+|||||||+|+.|++++|+.++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d 36 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFE 36 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEc
Confidence 578999999999999999999999999997633
No 22
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.46 E-value=2.8e-07 Score=86.30 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
++|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~ 39 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHI 39 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHH
Confidence 369999999999999999999999998876667778753
No 23
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.44 E-value=3.6e-07 Score=83.28 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
++|++|+|+|+|||||||+|+.|++.+|+.++. +|.+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~-~d~~ 52 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE-GDAL 52 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEE-GGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEe-CCcC
Confidence 457799999999999999999999999999764 5554
No 24
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.43 E-value=4.7e-07 Score=84.33 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=35.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
.+|++|+|.|+|||||||+|+.|++++|+.++..+|.++...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~ 46 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNM 46 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhh
Confidence 457899999999999999999999999999876667777754
No 25
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.43 E-value=3.8e-07 Score=84.68 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+++.|+|.|+|||||||+|+.|++++|+.++..+|.+++.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~ 45 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIK 45 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHH
Confidence 356899999999999999999999999998766677877654
No 26
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.41 E-value=1e-06 Score=78.12 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg-----l~~Vi~tD~ire~mr 200 (498)
+++|+|.|+|||||||+++.|++++| +.++..+|.+|+.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~ 48 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK 48 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh
Confidence 56899999999999999999999998 887765677777654
No 27
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.34 E-value=1.1e-06 Score=82.44 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=37.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
..++.|+|.|+|||||||+|+.|++++|+.++..+|.+++.+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~ 56 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVA 56 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHH
Confidence 4567899999999999999999999999998766677887644
No 28
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.34 E-value=8e-07 Score=85.33 Aligned_cols=80 Identities=26% Similarity=0.413 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh---cCCCeE-EcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR---LNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIV 234 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~---Lgl~~V-i~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V 234 (498)
+|.+|+|+|+|||||||+|+.|+++ +|+.++ +..|.+++.+.+ |... .+....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-----------~~~~---~e~~~~--------- 59 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-----------WKEK---YEEFIK--------- 59 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-----------CCGG---GHHHHH---------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-----------hhHH---HHHHHH---------
Confidence 5779999999999999999999998 788875 467888754221 2111 111111
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcccCCccc
Q 010885 235 RKGLAGDLKKAMKDGKPIIIEGIHLDPSI 263 (498)
Q Consensus 235 ~egL~~~IekaL~eG~sVIVEGthL~P~l 263 (498)
......+..++.. ..||+|+++..+..
T Consensus 60 -~~~~~~i~~~l~~-~~vIiD~~~~~~~~ 86 (260)
T 3a4m_A 60 -KSTYRLIDSALKN-YWVIVDDTNYYNSM 86 (260)
T ss_dssp -HHHHHHHHHHHTT-SEEEECSCCCSHHH
T ss_pred -HHHHHHHHHHhhC-CEEEEeCCcccHHH
Confidence 1122344555666 88999998776643
No 29
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.33 E-value=8.1e-07 Score=81.98 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~ 201 (498)
.|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~ 41 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKS 41 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHc
Confidence 5899999999999999999999999988777888887654
No 30
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.29 E-value=2.3e-06 Score=76.37 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
+.+|+|+|+|||||||+|+.||+++|+.++ .+|.+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i-~~d~~~~~~~ 44 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY-DSDKEIEKRT 44 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE-EHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE-EChHHHHHHc
Confidence 568999999999999999999999999986 5666655443
No 31
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=3.6e-06 Score=76.94 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
++.+|+|+|+|||||||+++.|++++|+.++..++.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence 456899999999999999999999999998654444443
No 32
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.28 E-value=9.3e-07 Score=81.88 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.+|++|+|.|+|||||||+|+.|++++|+.++..+|.++..+.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~ 45 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIA 45 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHH
Confidence 3577899999999999999999999999987655567777544
No 33
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.24 E-value=9e-07 Score=91.27 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=51.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL 238 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL 238 (498)
.|.+|+|+|+|||||||+|+.|++++|+.+| ..|.++. | ..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i-~~D~~~~---------------~----------------------~~~ 298 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV-NRDTLGS---------------W----------------------QRC 298 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC-CGGGSCS---------------H----------------------HHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE-ccchHHH---------------H----------------------HHH
Confidence 5789999999999999999999999998874 5665410 1 123
Q ss_pred HHHHHHHhhCCCcEEEEcccCCccc
Q 010885 239 AGDLKKAMKDGKPIIIEGIHLDPSI 263 (498)
Q Consensus 239 ~~~IekaL~eG~sVIVEGthL~P~l 263 (498)
...+..++..|.+||+|++++.+..
T Consensus 299 ~~~~~~~l~~g~~vIiD~~~~~~~~ 323 (416)
T 3zvl_A 299 VSSCQAALRQGKRVVIDNTNPDVPS 323 (416)
T ss_dssp HHHHHHHHHTTCCEEEESCCCSHHH
T ss_pred HHHHHHHHhcCCcEEEeCCCCCHHH
Confidence 4455567789999999999876543
No 34
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.24 E-value=1.4e-06 Score=77.16 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVYELL 199 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lg-----l~~Vi~tD~ire~m 199 (498)
++|+|.|+|||||||+|+.|+++++ +.++..+|.+++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 4799999999999999999999997 66654456676655
No 35
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.23 E-value=4.9e-06 Score=72.90 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
++|+|.|++||||||+|+.|++++|++++ .+|.+...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i-~~d~~~~~ 37 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFY-DVDEEVQK 37 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEE-EHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE-ECcHHHHH
Confidence 37999999999999999999999999976 45655443
No 36
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.21 E-value=7.1e-06 Score=75.04 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
+.+.+|+|.|+|||||||+++.|+..+|..++. +|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~-~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE-ADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE-GGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc-cccc
Confidence 457799999999999999999999999988764 5544
No 37
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.19 E-value=1e-06 Score=78.83 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
+++|+|+|+|||||||+|+.|++++|++++ ..|.+++.+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~i-d~D~~~~~~ 40 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLL-DTDVAIEQR 40 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEE-EHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEE-eCchHHHHH
Confidence 346999999999999999999999999986 566655443
No 38
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.19 E-value=9.1e-06 Score=72.00 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
.+.+|+|+|+|||||||+++.|+..+|..++. +|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~-~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD-GDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE-GGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe-Cccc
Confidence 35689999999999999999999999998764 5554
No 39
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.15 E-value=7.4e-06 Score=72.90 Aligned_cols=36 Identities=36% Similarity=0.456 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
+|+|+|+|||||||+|+.||+++|++++ .+|.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~-d~d~~~~~ 41 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL-DSDFLIEQ 41 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE-EHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE-cccHHHHH
Confidence 6899999999999999999999999986 46665543
No 40
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.12 E-value=5.6e-06 Score=88.25 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe----EEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN----VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~----Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~ 233 (498)
..|.+|+++|.|||||||+|+.|+++||+.. +++.|.+++.+.+... . ...+.. ..++ .|.....+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~--~--~~~f~~---~~~~---~~~~re~~ 102 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYS--S--YNFFRP---DNEE---AMKVRKQC 102 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCC--C--GGGGCT---TCHH---HHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCc--c--ccccCc---ccHH---HHHHHHHH
Confidence 4678999999999999999999999985332 3567888887654311 0 011110 0111 12111111
Q ss_pred HHHHHHHHHHHHh--hCCCcEEEEcccCCcccc
Q 010885 234 VRKGLAGDLKKAM--KDGKPIIIEGIHLDPSIY 264 (498)
Q Consensus 234 V~egL~~~IekaL--~eG~sVIVEGthL~P~l~ 264 (498)
+... ...+..++ ..|..||+|+++......
T Consensus 103 ~~~~-l~~~~~~L~~~~g~~VIvDat~~~~~~R 134 (520)
T 2axn_A 103 ALAA-LRDVKSYLAKEGGQIAVFDATNTTRERR 134 (520)
T ss_dssp HHHH-HHHHHHHHHHSCCCEEEEESCCCSHHHH
T ss_pred HHHH-HHHHHHHHHhcCCceEEecCCCCCHHHH
Confidence 2222 23344555 578899999999876544
No 41
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.12 E-value=1.2e-05 Score=72.46 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC--eEE----cchhHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLP--NVL----QTDMVYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~--~Vi----~tD~ire~mr 200 (498)
++++|+|.|+|||||||+|+.|+++++.. .+. .++.+++.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~ 50 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK 50 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh
Confidence 46799999999999999999999999874 333 2455665543
No 42
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.09 E-value=6e-06 Score=83.33 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccc--cHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDV--SQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I--~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
|...|.++||.++++.+|..++++.+.+.++..- ..+.+.+.+.+-|.+. ++... ...+........+|.+|.|+
T Consensus 59 ~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~--~~~~~~~~~~~~~g~vi~lv 135 (328)
T 3e70_C 59 LEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEI-LETSR--RIDLIEEIRKAEKPYVIMFV 135 (328)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHH-SCCSS--CCCHHHHHHSSCSSEEEEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHH-hCCcc--ccchhhhcccCCCCeEEEEE
Confidence 5567889999999999999999999987755321 1233344444433331 11100 01111112234578999999
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 010885 167 GTACVGKSTIATQLAQRL 184 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L 184 (498)
|++||||||+++.|+..+
T Consensus 136 G~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 136 GFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999999876
No 43
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.03 E-value=4.3e-06 Score=73.81 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
.+|+|.|++||||||+|+.||++||++++. +|.+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id-~D~~~~ 43 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD-TDMIIS 43 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE-HHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE-ChHHHH
Confidence 389999999999999999999999999865 555443
No 44
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.03 E-value=1.1e-05 Score=78.15 Aligned_cols=41 Identities=20% Similarity=0.447 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
.+.+-|.|+|||||||+|+.|++++|++++..+|.+|+.+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~ 48 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVK 48 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhcc
Confidence 35688999999999999999999999999877788998754
No 45
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.02 E-value=1.7e-05 Score=77.41 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
++|++|.|+|++||||||+|+.|+ .+|+.++. +|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id-~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIID-SDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEE-HHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEe-hhHH
Confidence 457899999999999999999999 68998764 5554
No 46
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.00 E-value=2e-05 Score=78.38 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhH-HHHHHHHHhhccCCCeEEEEE
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYI-SRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a-~rY~L~~~~~~~r~P~iIlI~ 166 (498)
=|.+.|.++||.+.+|.++..++++.+.+.++. ..+++...+.+.|.+. ++.... ..+. | ..+.|.++.|.
T Consensus 35 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-l~~~~~~~~l~----~-~~~~g~vi~lv 106 (302)
T 3b9q_A 35 ELEEALLVSDFGPKITVRIVERLREDIMSGKLK--SGSEIKDALKESVLEM-LAKKNSKTELQ----L-GFRKPAVIMIV 106 (302)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC--SHHHHHHHHHHHHHHH-HCC--CCCSCC----C-CSSSCEEEEEE
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHH-hCCcccccccc----c-ccCCCcEEEEE
Confidence 367889999999999999999999998876542 2345555555555441 111000 0000 1 12467899999
Q ss_pred cCCCCcHHHHHHHHHHhc----CCCeEEcchhHH
Q 010885 167 GTACVGKSTIATQLAQRL----NLPNVLQTDMVY 196 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L----gl~~Vi~tD~ir 196 (498)
|++||||||+++.||..+ |-..+...|..+
T Consensus 107 G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 107 GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 999999999999999876 333344556543
No 47
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.00 E-value=3.8e-06 Score=73.76 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
++|+|.|+|||||||+|+.|++++|++++ .+|.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i-d~d~~~~~ 39 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFV-DTDIFMQH 39 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEE-EHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE-cccHHHHH
Confidence 47999999999999999999999999976 45655543
No 48
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.00 E-value=4.4e-06 Score=73.57 Aligned_cols=38 Identities=39% Similarity=0.441 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
++.+|+|+|+|||||||+++.|+..+|+.++ .+|.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~i-d~d~~~~ 40 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY-DSDQEIE 40 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEE-EHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE-eccHHHH
Confidence 4568999999999999999999999999875 4555443
No 49
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.99 E-value=5.6e-06 Score=72.15 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
++|+|.|+|||||||+++.|++++|+.++ ..|.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i-~~d~~~~ 37 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPII-KGSSFEL 37 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEE-ECCCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeee-cCccccc
Confidence 37999999999999999999999999975 4555443
No 50
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.98 E-value=4.8e-06 Score=74.29 Aligned_cols=40 Identities=33% Similarity=0.399 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
++.+|+|+|+|||||||+++.|++++|+.++..++.+++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 4567899999999999999999999999987555555553
No 51
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.97 E-value=4.9e-06 Score=75.28 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh-cCCCeEEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR-LNLPNVLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~-Lgl~~Vi~tD~ire 197 (498)
++.+|+|+|+|||||||+++.|+++ +|++++..++.+++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 4678999999999999999999999 79998765556665
No 52
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.97 E-value=2.3e-05 Score=80.29 Aligned_cols=100 Identities=22% Similarity=0.294 Sum_probs=67.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhH-HHHHHHHHhhccCCCeEEEEEc
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYI-SRYRMMTRFHHQRVPLVILVCG 167 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a-~rY~L~~~~~~~r~P~iIlI~G 167 (498)
|...|.++||.+.++.++..++++.+.+.++. ..+++...+.+.|.+. ++.... .... | ....|.+|.|.|
T Consensus 93 l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~-l~~~~~~~~l~----l-~~~~g~vi~lvG 164 (359)
T 2og2_A 93 LEEALLVSDFGPKITVRIVERLREDIMSGKLK--SGSEIKDALKESVLEM-LAKKNSKTELQ----L-GFRKPAVIMIVG 164 (359)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC--SHHHHHHHHHHHHHHH-HCCC---CSCC----C-CSSSSEEEEEEC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHH-hCCcccCCCcc----e-ecCCCeEEEEEc
Confidence 56789999999999999999999998877653 3345555555555441 111000 0000 1 124678999999
Q ss_pred CCCCcHHHHHHHHHHhc----CCCeEEcchhHH
Q 010885 168 TACVGKSTIATQLAQRL----NLPNVLQTDMVY 196 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L----gl~~Vi~tD~ir 196 (498)
++||||||+++.||..+ |-..+...|..|
T Consensus 165 ~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 99999999999999876 333344556543
No 53
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.94 E-value=2.1e-05 Score=70.59 Aligned_cols=42 Identities=33% Similarity=0.399 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC---CCe-EEcchhHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN---LPN-VLQTDMVYELL 199 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg---l~~-Vi~tD~ire~m 199 (498)
.++.+|+|.|++||||||+++.|+..++ ... ++..|.+++.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~ 56 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTV 56 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHH
Confidence 3578999999999999999999999884 333 34578776643
No 54
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.93 E-value=7.6e-06 Score=75.10 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
++.+|.|.|++||||||+++.|+..+|++++..++.+++.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~ 43 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL 43 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence 3568999999999999999999999999987656666654
No 55
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.91 E-value=1e-05 Score=72.64 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
.+|.+|.|+|++||||||+++.|++. |+.++..++.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~ 45 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARA 45 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHh
Confidence 46889999999999999999999998 99986544444543
No 56
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.90 E-value=1.8e-05 Score=79.51 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEE
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVC 166 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~-~~r~P~iIlI~ 166 (498)
=|...|.++||.+.+|.++..++++.+.+.++..-.+..|++.+.++|...... .+...+. ....|.+|+|+
T Consensus 39 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~l~~~~~~~~vI~iv 111 (320)
T 1zu4_A 39 ELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWT-------NKKYRIDFKENRLNIFMLV 111 (320)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC-----------CCCCCCTTSCEEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCccccc-------ccccCccccCCCCeEEEEE
Confidence 467889999999999999999999988876554323344555555555432100 0000110 12467899999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCe-EEcchhH
Q 010885 167 GTACVGKSTIATQLAQRL---NLPN-VLQTDMV 195 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~i 195 (498)
|++|+||||++..||..+ |... ++..|..
T Consensus 112 G~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 112 GVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 999999999999999876 4443 3345654
No 57
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.88 E-value=4.1e-05 Score=69.97 Aligned_cols=40 Identities=38% Similarity=0.363 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYE 197 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~-~Vi~tD~ire 197 (498)
.++.+|+|.|+|||||||+++.|+..+ |.. +++.+|.++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 467899999999999999999999998 554 1345676665
No 58
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.88 E-value=2.4e-05 Score=83.79 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc--cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEE
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLL--DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILV 165 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~--~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI 165 (498)
=|...|..+||.+.++.+|..+++..+.+.+.. ...+..|++.+.++|....- ...+ ....+.+|+|
T Consensus 230 el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~------~Isl-----~i~~GeVI~L 298 (503)
T 2yhs_A 230 ELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDE------PLNV-----EGKAPFVILM 298 (503)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHHHHHHHHHHHHTTBC------CCCC-----CSCTTEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCC------Ccee-----eccCCeEEEE
Confidence 466779999999999999999999988765442 22233444444444432100 0111 1246789999
Q ss_pred EcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHH
Q 010885 166 CGTACVGKSTIATQLAQRL---NLP-NVLQTDMVY 196 (498)
Q Consensus 166 ~G~pGSGKSTlA~~LA~~L---gl~-~Vi~tD~ir 196 (498)
+|++||||||+++.|+..+ +-. .+...|.++
T Consensus 299 VGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred ECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 9999999999999999876 333 333466654
No 59
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.87 E-value=3.2e-05 Score=71.28 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=32.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC----CCe-EEcchhHHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLN----LPN-VLQTDMVYEL 198 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg----l~~-Vi~tD~ire~ 198 (498)
..++.+|+|.|++||||||+++.|+..++ .+. ++..|.++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~ 68 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG 68 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhh
Confidence 45678999999999999999999999875 332 2456766643
No 60
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.86 E-value=6.8e-05 Score=66.47 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
++|+|.|++||||||+|+.|++++ |++++.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 379999999999999999999998 898764
No 61
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.85 E-value=1.1e-05 Score=75.15 Aligned_cols=46 Identities=30% Similarity=0.351 Sum_probs=35.2
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 154 ~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
+++.....+|.|+|.+||||||+|+.|++.+|++++..++.+++.+
T Consensus 6 ~~~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~ 51 (192)
T 2grj_A 6 IHHHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVL 51 (192)
T ss_dssp ----CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHH
Confidence 3444456799999999999999999999999999876556656544
No 62
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.84 E-value=1.6e-05 Score=71.72 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+|.|.|++||||||+|+.|++++|++++..++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHh
Confidence 899999999999999999999999998654444443
No 63
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.81 E-value=0.00024 Score=67.40 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=26.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..++.+|+|.|++||||||+++.|++.++
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 44678999999999999999999999986
No 64
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.79 E-value=1.8e-05 Score=72.83 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+|++|.|.|++||||||+++.|+. +|++++. +|.+.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id-~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVID-ADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEE-HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEE-ccHHHH
Confidence 578999999999999999999998 9998764 555433
No 65
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.79 E-value=1.8e-05 Score=72.01 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
+.+|.|.|++||||||+++.|+. +|+.++..++..++
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~ 38 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVARE 38 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHH
Confidence 46899999999999999999987 99998654444443
No 66
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.79 E-value=1.5e-05 Score=75.71 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.+|++|.|+|++||||||+|+.|++.+|++
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 468899999999999999999999999987
No 67
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.78 E-value=3.1e-05 Score=76.72 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=59.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH-HHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 010885 89 LSRMLTVTKIPNHVAIKIALEL-KKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~el-Kk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G 167 (498)
|...|..+||.+.++.++..++ ++.+... .++.+++...+.+.|.+. ++... . +.-...+.+|+|+|
T Consensus 45 l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-l~~~~--~------~~~~~~g~vi~lvG 112 (296)
T 2px0_A 45 AEKLLQETGIKESTKTNTLKKLLRFSVEAG---GLTEENVVGKLQEILCDM-LPSAD--K------WQEPIHSKYIVLFG 112 (296)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHSSS---CCCTTTHHHHHHHHHHTT-SCCGG--G------SCCCCCSSEEEEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhhccc---CCCHHHHHHHHHHHHHHH-hCCcc--c------ccccCCCcEEEEEC
Confidence 5678999999999999999999 5555543 233456666666666552 21110 0 11123578999999
Q ss_pred CCCCcHHHHHHHHHHhc
Q 010885 168 TACVGKSTIATQLAQRL 184 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L 184 (498)
++|+||||++..||..+
T Consensus 113 ~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 113 STGAGKTTTLAKLAAIS 129 (296)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 68
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.77 E-value=4e-05 Score=76.64 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G 167 (498)
=|.+.|.++||.+..|.++..++++ ..+. .+..+.+.+.++|.... + +. + ...+|.+|+|+|
T Consensus 50 ~l~~~L~~~dv~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~l~~~~--~-----~~----~-~~~~~~vi~ivG 111 (306)
T 1vma_A 50 ELEELLIQADVGVETTEYILERLEE-----KDGD-ALESLKEIILEILNFDT--K-----LN----V-PPEPPFVIMVVG 111 (306)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTT-----CCSC-HHHHHHHHHHHHTCSCC--C-----CC----C-CSSSCEEEEEEC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHh-----cCHH-HHHHHHHHHHHHhCCCC--C-----Cc----c-cCCCCeEEEEEc
Confidence 4678899999999999999998876 1122 33444444444442210 0 11 1 134688999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 010885 168 TACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ir 196 (498)
++||||||++..||..+ |... ++..|..|
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 99999999999999876 4443 34556554
No 69
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.77 E-value=1.8e-05 Score=74.54 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=35.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
+|.+|+|.|+|||||||+++.|++++|+..+..++.++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 5789999999999999999999999999987666777664
No 70
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.76 E-value=5.3e-05 Score=70.66 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
.++|.|.|++||||||+|+.||++||++++. .|.+++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~ 42 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDE 42 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHH
Confidence 3589999999999999999999999999875 676665
No 71
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.76 E-value=3.1e-05 Score=69.51 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
.+|+|+|+|||||||+++.|+..++....+..|.+++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 4789999999999999999998886544456776654
No 72
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.76 E-value=2.2e-05 Score=79.64 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=32.0
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM 194 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ 194 (498)
...+|.+|+|+||+||||||+|..||++++... ++.|.
T Consensus 6 ~~~~~~~i~i~GptgsGKt~la~~La~~~~~~i-is~Ds 43 (316)
T 3foz_A 6 KASLPKAIFLMGPTASGKTALAIELRKILPVEL-ISVDS 43 (316)
T ss_dssp -CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEE-EECCT
T ss_pred cCCCCcEEEEECCCccCHHHHHHHHHHhCCCcE-Eeccc
Confidence 345688999999999999999999999999875 46665
No 73
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.71 E-value=8e-05 Score=66.48 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=32.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYEL 198 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V-i~tD~ire~ 198 (498)
-..+.+|+|.|+|||||||+++.|+..++...+ +.+|.++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~ 48 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY 48 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh
Confidence 345679999999999999999999988766532 456666653
No 74
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.71 E-value=9.1e-05 Score=77.77 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=66.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhc-CCChhhHHHHHHHHHhhccCCCeEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERR-GYGEEYISRYRMMTRFHHQRVPLVILV 165 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-q~eLe~~V~~lL~~~-~yge~~a~rY~L~~~~~~~r~P~iIlI 165 (498)
|.+.|.+++|.+.++..+..+++..+.+..+. .++ .+.+...|.+-|.+. +-... ........|.+|++
T Consensus 31 l~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~~~~--------~~~~~~~~~~vI~l 102 (433)
T 3kl4_A 31 LQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGDKE--------PNVNPTKLPFIIML 102 (433)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCSSSC--------CCCSCCSSSEEEEE
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcCcccc--------ccccccCCCeEEEE
Confidence 46778889999999999999999999877653 232 334444444433321 00000 00111235899999
Q ss_pred EcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 010885 166 CGTACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (498)
Q Consensus 166 ~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ir 196 (498)
+|++|+||||++..||..+ |... ++..|..|
T Consensus 103 vG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 103 VGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 9999999999999999776 5554 34556544
No 75
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.70 E-value=2.2e-05 Score=71.91 Aligned_cols=38 Identities=34% Similarity=0.373 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
|++|.|+|++||||||+++.|++++|++++..++.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 67899999999999999999999999998755555554
No 76
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.70 E-value=0.00015 Score=76.51 Aligned_cols=100 Identities=16% Similarity=0.312 Sum_probs=67.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCccc-cc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~-I~-q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
|.+.|.+++|.+.++..+..+++..+.+..+.. ++ .+.+...|.+-|.+. .+.. . ..+....+|.+|+++
T Consensus 35 i~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~-L~~~--~-----~~~~~~~~p~vIliv 106 (443)
T 3dm5_A 35 IQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKF-LGTE--A-----KPIEIKEKPTILLMV 106 (443)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH-TTSS--C-----CCCCCCSSSEEEEEE
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHH-hcCc--c-----cccccCCCCeEEEEE
Confidence 557889999999999999999999988776542 22 344444444444331 1100 0 001112358999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 010885 167 GTACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~ir 196 (498)
|++|+||||++..||..+ |.+. ++..|..|
T Consensus 107 G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 107 GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 999999999999999876 5554 34556554
No 77
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.69 E-value=2.7e-05 Score=75.38 Aligned_cols=40 Identities=30% Similarity=0.279 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
.+|++|.|.|+|||||||+++.|++++|+.++..++.+|.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~ 46 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRI 46 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHH
Confidence 3578999999999999999999999999998654444444
No 78
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.69 E-value=0.00012 Score=76.62 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=66.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc------cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL------DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLV 162 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~------~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~i 162 (498)
|.+.|.++||.+.++.++..++++.+.+.++. ......+.+.+.++|.... .+ +. + ....|.+
T Consensus 34 ~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-----~~----~-~~~~~~v 102 (433)
T 2xxa_A 34 VRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEEN-QT-----LN----L-AAQPPAV 102 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHHCSSS-CC-----CC----C-CSSSSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHhcccc-cc-----cc----c-cCCCCeE
Confidence 66789999999999999999999998887653 2333455666655553211 00 00 1 1246889
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc----CCCeE-Ecchh
Q 010885 163 ILVCGTACVGKSTIATQLAQRL----NLPNV-LQTDM 194 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~L----gl~~V-i~tD~ 194 (498)
|+++|++|+||||++..||..+ |.+.+ +..|.
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 9999999999999999999766 55543 34453
No 79
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.65 E-value=3.3e-05 Score=74.13 Aligned_cols=34 Identities=41% Similarity=0.654 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
.+|+|+|+|||||||+|..||.++|+.++ ..|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i-~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVV-ALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEE-ECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEE-eccHH
Confidence 37999999999999999999999999875 45554
No 80
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.64 E-value=5.8e-05 Score=75.26 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhc------cCCCe
Q 010885 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHH------QRVPL 161 (498)
Q Consensus 88 lLsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~------~r~P~ 161 (498)
=|.+.|.++||.+.+|.++..++++.+. .-....+.+.+.++|... . ..+....-.+.. ...|.
T Consensus 34 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~--~---~~~~~~~~~~~~~~~~~~~~~g~ 103 (304)
T 1rj9_A 34 ELEMALLAADVGLSATEEILQEVRASGR-----KDLKEAVKEKLVGMLEPD--E---RRATLRKLGFNPQKPKPVEPKGR 103 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCC-----SSTTHHHHHHHTTTTCTT--C---HHHHHHHTTCCCCCCCCCCCSSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCcc--c---ccccccccccccccccccCCCCe
Confidence 4778899999999999999999987654 212233444444433211 0 000000001111 12578
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+|.|+|++||||||+++.|+..+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999776
No 81
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.64 E-value=0.00013 Score=78.26 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=54.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC---C-eEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNL---P-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl---~-~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~ 233 (498)
..+.+|+++|++||||||+|+.|+++++. . .++..|.+++.+.+. ..|. ..+....
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~--------~~f~-----~~er~~~------- 429 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRG--------LGFS-----KEDRITN------- 429 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTT--------CCSS-----HHHHHHH-------
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccc--------cccc-----HHHHHHH-------
Confidence 45789999999999999999999998863 2 346788888765321 0111 1111111
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcccCCc
Q 010885 234 VRKGLAGDLKKAMKDGKPIIIEGIHLDP 261 (498)
Q Consensus 234 V~egL~~~IekaL~eG~sVIVEGthL~P 261 (498)
...+...+...+..|..||+|++.+.+
T Consensus 430 -l~~i~~~~~~~l~~G~~VI~d~~~~~~ 456 (546)
T 2gks_A 430 -ILRVGFVASEIVKHNGVVICALVSPYR 456 (546)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEECCCCCH
T ss_pred -HHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence 122334455567889999999876544
No 82
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.63 E-value=3.1e-05 Score=70.23 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
++|.|+|++||||||+++.|+. +|++++..++.+++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~ 37 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHS 37 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHH
Confidence 3799999999999999999999 99987654444443
No 83
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.62 E-value=3.6e-05 Score=69.32 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVL 190 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~Vi 190 (498)
++++|+|.|++||||||+++.|++++ |++++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 57899999999999999999999999 576553
No 84
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.61 E-value=2.9e-05 Score=79.30 Aligned_cols=36 Identities=22% Similarity=0.509 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
++.+|+|+|++||||||+|..||..++... ++.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~~~i-is~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFNGEI-ISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTEEE-EECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcCCce-eccccc
Confidence 456999999999999999999999999765 566655
No 85
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.61 E-value=0.00013 Score=72.42 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=65.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~-~I~q-~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
|.+.|.++||.+..+.++..++++.+.+.++. .++. +.+...+.+-|... |+... .. . +.-..+|.+|++.
T Consensus 32 ~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~--~---i~~~~~~~vi~i~ 104 (297)
T 1j8m_F 32 LQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNL-FGGDK-EP--K---VIPDKIPYVIMLV 104 (297)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH-TTCSC-CC--C---CSCSSSSEEEEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHH-hcccc-cc--c---cccCCCCeEEEEE
Confidence 66789999999999999999999998887763 2333 44555555554441 22110 00 0 1111238899999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCeE-Ecch
Q 010885 167 GTACVGKSTIATQLAQRL---NLPNV-LQTD 193 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L---gl~~V-i~tD 193 (498)
|++|+||||++..||..+ |.+.+ +..|
T Consensus 105 G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 105 GVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp CSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999999999999776 54433 3445
No 86
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.58 E-value=5.2e-05 Score=71.16 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
.++.+|.|+|++||||||+++.|+.++|+.++..++.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 4577999999999999999999999999998765555554
No 87
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.57 E-value=6.2e-05 Score=76.62 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i--re~mr 200 (498)
++.+|+|+||+||||||+|..||++++... ++.|.+ +..|.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~i-is~Ds~QvYr~~~ 44 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEV-ISGDSMQVYRGMD 44 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEE-EECCGGGGBTTCC
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccce-eecCcccceeeee
Confidence 356899999999999999999999999875 566654 44443
No 88
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.57 E-value=6.4e-05 Score=71.89 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire 197 (498)
...+|.|.|++||||||+++.|+++||+.++..++.+|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 346899999999999999999999999998765555544
No 89
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.55 E-value=0.00011 Score=74.67 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
+|.+|+|+|++||||||+|..||+++|...+ ..|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~ii-s~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELI-SVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEE-EECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEE-eccch
Confidence 5679999999999999999999999998865 55543
No 90
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.55 E-value=0.0002 Score=74.56 Aligned_cols=93 Identities=15% Similarity=0.243 Sum_probs=54.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe----EEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN----VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~----Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~ 233 (498)
.+|.+|+++|.|||||||+++.|++.++... .+..|.++..+.+... ....|... .. ..+.....+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~----~~~ifd~~--g~----~~~r~re~~ 106 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYK----SFEFFLPD--NE----EGLKIRKQC 106 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCC----CGGGGCTT--CH----HHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCC----cccccCCC--CH----HHHHHHHHH
Confidence 4688999999999999999999999886332 2345557766554210 01223221 11 111111122
Q ss_pred HHHHHHHHHHHHh--hCCCcEEEEcccCCc
Q 010885 234 VRKGLAGDLKKAM--KDGKPIIIEGIHLDP 261 (498)
Q Consensus 234 V~egL~~~IekaL--~eG~sVIVEGthL~P 261 (498)
+...+. .+..++ ..|..+|+|+++...
T Consensus 107 ~~~~l~-~~~~~l~~~~G~~vV~D~tn~~~ 135 (469)
T 1bif_A 107 ALAALN-DVRKFLSEEGGHVAVFDATNTTR 135 (469)
T ss_dssp HHHHHH-HHHHHHHTTCCSEEEEESCCCSH
T ss_pred HHHHHH-HHHHHHHhCCCCEEEEeCCCCCH
Confidence 222332 334555 567789999998755
No 91
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.55 E-value=0.00011 Score=75.19 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
+++.+|+|+||+||||||+|..||+++|... ++.|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~ei-Is~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEV-INSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEE-EECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcE-Eccccc
Confidence 4567999999999999999999999999885 466654
No 92
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.53 E-value=0.00014 Score=70.75 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~ 198 (498)
..+|+|.|++||||||+++.|+..+|+.++..++.++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~ 86 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQA 86 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHH
Confidence 447999999999999999999999999986544444443
No 93
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.52 E-value=4e-05 Score=69.96 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVY 196 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~Vi~tD~ir 196 (498)
.++.+|.|+|+|||||||+++.|+..+ ++.++..+|.++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 356799999999999999999999988 788765555443
No 94
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.51 E-value=2.8e-05 Score=70.46 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
.+|++|+|.|++||||||+++.|+++++...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999987554
No 95
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.49 E-value=0.00023 Score=74.47 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=67.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~ 166 (498)
|.+.|.++||.+.++.++..+++..+.+..+. .++ .+.+...+.+-|... |+... ..+.-. .|.+|+++
T Consensus 34 ~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-~~~~~-------~~i~l~-~~~vi~i~ 104 (425)
T 2ffh_A 34 IRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEA-LGGEA-------RLPVLK-DRNLWFLV 104 (425)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHH-TTSSC-------CCCCCC-SSEEEEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHH-hCCCc-------ccccCC-CCeEEEEE
Confidence 55889999999999999999999998887763 223 244555555555442 32210 011112 67899999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCe-EEcchhH
Q 010885 167 GTACVGKSTIATQLAQRL---NLPN-VLQTDMV 195 (498)
Q Consensus 167 G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~i 195 (498)
|++|+||||++..||..+ |... ++..|..
T Consensus 105 G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 999999999999999877 4443 3344543
No 96
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.48 E-value=6.4e-05 Score=67.17 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
++|+|.|++||||||+++.|++++|..++
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 37899999999999999999999998654
No 97
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.47 E-value=0.00038 Score=75.23 Aligned_cols=42 Identities=31% Similarity=0.322 Sum_probs=34.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC----CCe-EEcchhHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN----LPN-VLQTDMVYELL 199 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg----l~~-Vi~tD~ire~m 199 (498)
.+|++|+|.|+|||||||+|+.|+++|+ ..+ ++.+|.+|..+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l 440 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL 440 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh
Confidence 3578999999999999999999999986 443 45678888754
No 98
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.45 E-value=5.5e-05 Score=68.44 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
.+|++|+|.|++||||||+++.|+++++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999998753
No 99
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.43 E-value=0.0002 Score=66.09 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+++.+|+|+||+||||||+++.|+..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4577999999999999999999998875
No 100
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.43 E-value=9e-05 Score=66.14 Aligned_cols=30 Identities=37% Similarity=0.329 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
++|+|.|++||||||+++.|++++ |++++.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 379999999999999999999999 998753
No 101
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.39 E-value=8.6e-05 Score=68.01 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.5
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+..++.+|+|+|+|||||||+++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 355788999999999999999999999885
No 102
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.38 E-value=0.0003 Score=73.49 Aligned_cols=98 Identities=18% Similarity=0.346 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc-cccHHH-HHHHHHHHHHhc-CCChhhHHHHHHHHHhh-ccCCCeEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQSD-LEANLFKLMERR-GYGEEYISRYRMMTRFH-HQRVPLVIL 164 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~-~I~q~e-Le~~V~~lL~~~-~yge~~a~rY~L~~~~~-~~r~P~iIl 164 (498)
+...|.+++|.+.++.++..++++...+.++. .++..+ +...+.+.|.+. +-.. . .+. ....|.+|+
T Consensus 33 ~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~------~~~~~~~~~~vI~ 103 (432)
T 2v3c_C 33 IQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEA---K------KLELNPKKQNVIL 103 (432)
T ss_dssp HHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHHHCCSC---C------CCCCCSSSCCCEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHHhCCCC---c------CccccCCCCeEEE
Confidence 45678899999999999999999988776543 334333 444443333221 0000 0 011 124578999
Q ss_pred EEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhH
Q 010885 165 VCGTACVGKSTIATQLAQRL---NLPN-VLQTDMV 195 (498)
Q Consensus 165 I~G~pGSGKSTlA~~LA~~L---gl~~-Vi~tD~i 195 (498)
|+|++|+||||++..||..+ |.+. ++..|..
T Consensus 104 ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 104 LVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp EECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 99999999999999999876 3443 3455543
No 103
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.35 E-value=0.00042 Score=76.06 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi-~tD~ire 197 (498)
+|++|+|+|+|||||||+|+.|+++| |+.++. ..|.+|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 68899999999999999999999999 988754 3466654
No 104
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.35 E-value=0.00018 Score=64.05 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVYE 197 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi-~tD~ire 197 (498)
++.+|+|.|++||||||+++.|+..+ |++.+. ..|.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 46 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH
Confidence 56789999999999999999999988 988753 3455544
No 105
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.35 E-value=0.0012 Score=62.27 Aligned_cols=84 Identities=25% Similarity=0.331 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc--------chhHHHHHhcCCCCCCCCCccccccccChHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF 227 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi~--------tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f 227 (498)
++++|+|.|++||||||++..|++.| |+..+.. ...+++.+...... .|. +....--|
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~------~~~-----~~~~~llf 73 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDE------PMA-----ADTELLLM 73 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSS------CCC-----HHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCC------CCC-----HHHHHHHH
Confidence 46799999999999999999999988 4554331 12345544321100 011 11111112
Q ss_pred hhcchhHHHHHHHHHHHHhhCCCcEEEEc
Q 010885 228 VRECRIVRKGLAGDLKKAMKDGKPIIIEG 256 (498)
Q Consensus 228 ~~q~~~V~egL~~~IekaL~eG~sVIVEG 256 (498)
.. .-.+.+...+..++.+|..||.|=
T Consensus 74 ~a---~R~~~~~~~i~p~l~~g~~Vi~DR 99 (213)
T 4edh_A 74 FA---ARAQHLAGVIRPALARGAVVLCDR 99 (213)
T ss_dssp HH---HHHHHHHHTHHHHHHTTCEEEEES
T ss_pred HH---HHHHHHHHHHHHHHHCCCEEEECc
Confidence 11 011234566778889999999885
No 106
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.34 E-value=0.00012 Score=71.67 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=30.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.+.|..+++.|+||+|||++|+.+|..+|.+.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568899999999999999999999999988653
No 107
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.31 E-value=0.00058 Score=61.27 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=48.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhhcchhHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL 238 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~q~~~V~egL 238 (498)
.+-++.|+|+|||||||+++.+. .|.. ++..|.++..+....+ ...+ . ..+.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~-~~~~d~~~g~~~~~~~---------~~~~-------~------~~~~~~~ 62 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTE-VISSDFCRGLMSDDEN---------DQTV-------T------GAAFDVL 62 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGG-EEEHHHHHHHHCSSTT---------CGGG-------H------HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCe-EEccHHHHHHhcCccc---------chhh-------H------HHHHHHH
Confidence 45689999999999999999864 3444 4678888765532111 0000 0 0112223
Q ss_pred HHHHHHHhhCCCcEEEEcccCCc
Q 010885 239 AGDLKKAMKDGKPIIIEGIHLDP 261 (498)
Q Consensus 239 ~~~IekaL~eG~sVIVEGthL~P 261 (498)
.......+..|...+++.+++.+
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~s 85 (171)
T 4gp7_A 63 HYIVSKRLQLGKLTVVDATNVQE 85 (171)
T ss_dssp HHHHHHHHHTTCCEEEESCCCSH
T ss_pred HHHHHHHHhCCCeEEEECCCCCH
Confidence 33444566789999999887653
No 108
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.29 E-value=0.00013 Score=76.33 Aligned_cols=40 Identities=40% Similarity=0.570 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLR 200 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~--ire~mr 200 (498)
+.+|+|+||+||||||+|..||++++... ++.|. ++..|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~i-is~Ds~QvYr~l~ 43 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEV-INSDSMQVYKDIP 43 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEE-EECCTTTTBSSCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeE-eecCccceecccc
Confidence 45899999999999999999999999875 56666 444443
No 109
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.26 E-value=0.00021 Score=68.25 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
..++|.|.|++||||||+|+.||++||++++. .|.+++...
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 35799999999999999999999999999865 888887554
No 110
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.26 E-value=0.0004 Score=74.16 Aligned_cols=98 Identities=13% Similarity=0.199 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEE
Q 010885 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILV 165 (498)
Q Consensus 89 LsR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~-~I~q-~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~-~~r~P~iIlI 165 (498)
|.+.|.++||.+.++.++..+++..+.+..+. .++. +.+...+.+-|.+. ++.. . ..+. ....|.+|+|
T Consensus 35 l~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~l-l~~~-~------~~~~~~~~~~~vI~i 106 (504)
T 2j37_W 35 VCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKL-VDPG-V------KAWTPTKGKQNVIMF 106 (504)
T ss_dssp HHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHH-HCCC-C------CCCCCCSS--EEEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHH-hccc-c------chhccccCCCeEEEE
Confidence 44788889999999999999999888776652 2222 23333333333221 0000 0 0011 1246889999
Q ss_pred EcCCCCcHHHHHHHHHHhc---CCCeE-Ecchh
Q 010885 166 CGTACVGKSTIATQLAQRL---NLPNV-LQTDM 194 (498)
Q Consensus 166 ~G~pGSGKSTlA~~LA~~L---gl~~V-i~tD~ 194 (498)
+|++|+||||++..||..+ |.+.. +..|.
T Consensus 107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 9999999999999999776 65543 34444
No 111
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.26 E-value=0.00022 Score=67.66 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|.-++|.|+||+||||+|+.+|..++.+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999998764
No 112
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00024 Score=74.57 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|+=||++||||||||++|+++|..+|++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 567889999999999999999999999988753
No 113
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00024 Score=74.64 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|+=||++||||||||++|+++|.++|++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 568899999999999999999999999998653
No 114
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.19 E-value=0.0011 Score=65.47 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=58.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhhcCccc-ccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 010885 90 SRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (498)
Q Consensus 90 sR~Lt~agVa~~vA~rIa~elKk~Lv~~~v~~-I~q-~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G 167 (498)
...|..+++.++.+..++.+++....++.+.. .+. +++...+.+-+.. .|+... ..+.-. .+.+|.++|
T Consensus 35 ~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-------~~i~~~-~~~~i~i~g 105 (295)
T 1ls1_A 35 RRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKE-ALGGEA-------RLPVLK-DRNLWFLVG 105 (295)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHH-HTTSSC-------CCCCCC-SSEEEEEEC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHH-HHCCCC-------ceeecC-CCeEEEEEC
Confidence 47789999999999999999998877765542 333 4555544444433 122110 001112 577899999
Q ss_pred CCCCcHHHHHHHHHHhc
Q 010885 168 TACVGKSTIATQLAQRL 184 (498)
Q Consensus 168 ~pGSGKSTlA~~LA~~L 184 (498)
++|+||||++..||..+
T Consensus 106 ~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999999776
No 115
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.19 E-value=0.00014 Score=66.23 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC--CCeEEcc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN--LPNVLQT 192 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg--l~~Vi~t 192 (498)
..+.+|.|.|++||||||+++.|+..++ +.++..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 3567999999999999999999999888 7765433
No 116
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00033 Score=73.71 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|+=||++||||||||++|+++|..+|++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 567899999999999999999999999998753
No 117
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.12 E-value=0.00042 Score=67.64 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.|..|+|.|+|||||||+|+.||..++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i 78 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFI 78 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999987765
No 118
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.11 E-value=0.002 Score=62.14 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++.+|+|.|++||||||++..|++.|
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999988
No 119
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.10 E-value=0.00038 Score=64.84 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|.-|+|.|+||+|||++|+.++..++.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999998765
No 120
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.10 E-value=0.0012 Score=63.44 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+.++|+|.|++||||||+++.|+++|
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999988
No 121
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00035 Score=74.25 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|+=||++||||||||++|+++|.++|++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 568899999999999999999999999998753
No 122
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00035 Score=73.04 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|+=||+.||||||||++|+++|..+|++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 457889999999999999999999999998753
No 123
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.07 E-value=0.00091 Score=63.49 Aligned_cols=32 Identities=41% Similarity=0.543 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|..++|.|+||+|||++|+.++..++.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45677899999999999999999999988764
No 124
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.05 E-value=0.00011 Score=72.50 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVY 196 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg-----l~~Vi~tD~ir 196 (498)
++.+|.|+|++||||||+|+.|++.+| +.+ +.+|.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~v-I~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVS-IEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEE-EEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeE-eecchhh
Confidence 567899999999999999999999887 454 4555543
No 125
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.03 E-value=0.0019 Score=61.92 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
.++++|+|.|++||||||+++.|+++|+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998754
No 126
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.02 E-value=0.00038 Score=62.50 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+.+|.|+|+|||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999876
No 127
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00058 Score=72.10 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|+=||++||||||||++|+++|..+|++++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 567889999999999999999999999998753
No 128
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.01 E-value=0.0031 Score=59.71 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=48.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CC-CeEE--------cchhHHHHHhcCCCCCCCCCccccccccChHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL---NL-PNVL--------QTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF 227 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L---gl-~~Vi--------~tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f 227 (498)
+++|+|.|++||||||+++.|++.| |+ ..+. ....+|+.+.+..... ...+....+.+ -|
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~-------~~~~~~~~e~l-L~ 74 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG-------DEVITDKAEVL-MF 74 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTT-------TCCCCHHHHHH-HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccc-------cccCChHHHHH-HH
Confidence 5689999999999999999999988 55 3222 1123555544211000 00011111111 12
Q ss_pred hhcchhHHHHHHHHHHHHhhCCCcEEEEc
Q 010885 228 VRECRIVRKGLAGDLKKAMKDGKPIIIEG 256 (498)
Q Consensus 228 ~~q~~~V~egL~~~IekaL~eG~sVIVEG 256 (498)
.. .-.+.+...|..++.+|..||.|=
T Consensus 75 ~A---~R~~~~~~~i~paL~~g~~VI~DR 100 (213)
T 4tmk_A 75 YA---ARVQLVETVIKPALANGTWVIGDR 100 (213)
T ss_dssp HH---HHHHHHHHTHHHHHHTTCEEEEEC
T ss_pred HH---HHHHHHHHHHHHHHHCCCEEEEcC
Confidence 11 011335566778899999999885
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.99 E-value=0.0011 Score=63.10 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..|..++|.|+||+|||++|+.++..++.+++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999998864
No 130
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.00063 Score=64.01 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|.-++|.|+||+||||+|+.|+..++.+.+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 4667999999999999999999999987764
No 131
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.93 E-value=0.00058 Score=62.78 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+.+.+|.|.|+|||||||+++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999998875
No 132
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.91 E-value=0.00087 Score=70.68 Aligned_cols=32 Identities=41% Similarity=0.542 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.|.-|++.|+||+||||+|+.||..++++++.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 46779999999999999999999999998764
No 133
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.91 E-value=0.0017 Score=64.66 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.+..|+|.|+||||||++|+.||..++.+++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 45678999999999999999999999988753
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.90 E-value=0.00081 Score=59.77 Aligned_cols=30 Identities=43% Similarity=0.533 Sum_probs=25.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
.+.|..++|.|++|+||||+++.+++.++.
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345668999999999999999999998854
No 135
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.89 E-value=0.00067 Score=64.91 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|..++|.|+||+||||+|+.++..++.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 4678999999999999999999999987754
No 136
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.0011 Score=57.04 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+..++|.|++|+||||+|+.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999987
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.87 E-value=0.0011 Score=60.07 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+..++|.|+||+||||+|+.++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 566899999999999999999998874
No 138
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.81 E-value=0.0018 Score=61.90 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+.+..++|.|+||+|||++|+.+|..++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4456799999999999999999999883
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.80 E-value=0.0011 Score=64.57 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|.=++|.|+|||||||+++.||..++...+
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 3445999999999999999999999987654
No 140
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.78 E-value=0.0047 Score=57.33 Aligned_cols=30 Identities=37% Similarity=0.329 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
+.|.|-|+-||||||.++.|++.| |...+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 468899999999999999999988 676654
No 141
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.76 E-value=0.0013 Score=56.91 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+..++|.|++|+||||+|+.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999999987
No 142
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.76 E-value=0.005 Score=58.60 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
++++|+|.|++||||||++..|++.|+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 56799999999999999999999999863
No 143
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.75 E-value=0.0069 Score=56.75 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=48.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEc--------chhHHHHHhcCCCCCCCCCccccccccChHHHHHHHhh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL--NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVR 229 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L--gl~~Vi~--------tD~ire~mr~~~~~pLss~~~W~~~f~s~EelI~~f~~ 229 (498)
...|.|-|+.||||||+++.|+++| |...+.. .+.+|+.+.... + |. +....--|..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~--~------~~-----~~~~~lLf~a 68 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGN--D------MD-----IRTEAMLFAA 68 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSC--C------CC-----HHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhccc--C------CC-----HHHHHHHHHH
Confidence 3478999999999999999999998 5555431 234555443211 1 11 1111111211
Q ss_pred cchhHHHHHHHHHHHHhhCCCcEEEEcc
Q 010885 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGI 257 (498)
Q Consensus 230 q~~~V~egL~~~IekaL~eG~sVIVEGt 257 (498)
.-.+-+...+..++.+|..||.|--
T Consensus 69 ---~R~~~~~~~i~p~l~~g~~Vi~DRy 93 (205)
T 4hlc_A 69 ---SRREHLVLKVIPALKEGKVVLCDRY 93 (205)
T ss_dssp ---HHHHHHHHTHHHHHHTTCEEEEECC
T ss_pred ---HHHHHHHHHHHHHHHcCCEEEecCc
Confidence 0012345567788899999998863
No 144
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.73 E-value=0.001 Score=59.79 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+.+|.|.|++||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998764
No 145
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.00098 Score=60.01 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+++|+|+|||||||+++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998763
No 146
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.001 Score=62.30 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL-NLP 187 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~ 187 (498)
+|++|+|.|++||||||+++.|++++ +..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 47899999999999999999999999 443
No 147
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.72 E-value=0.00099 Score=65.50 Aligned_cols=31 Identities=29% Similarity=0.266 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|.-|+|+|+||+|||++|+.+|..++.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 4578999999999999999999999998765
No 148
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.70 E-value=0.00051 Score=65.40 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc-CCCe
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL-NLPN 188 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~ 188 (498)
.+|++|+|.|++||||||+++.|++.+ ++.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 468899999999999999999999999 5443
No 149
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.69 E-value=0.0014 Score=66.22 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=26.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+.|.+|.|.|++||||||+++.|+..++
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34689999999999999999999998875
No 150
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.67 E-value=0.00044 Score=62.59 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
++|+|.|++||||||+++.|+..++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999885
No 151
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.67 E-value=0.0037 Score=61.91 Aligned_cols=58 Identities=22% Similarity=0.457 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 127 LEANLFKLMERRGYGEEYISRYRMMTRFHHQR--VPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 127 Le~~V~~lL~~~~yge~~a~rY~L~~~~~~~r--~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
-...+.++|.-++|...+...| + ..+.+.+ +...|+|.||||+|||++|..||..+++
T Consensus 71 ~~n~i~~~l~~qg~~~~~~~~~-l-~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 71 SSNRIYKILELNGYDPQYAASV-F-LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp GGCHHHHHHHHTTCCHHHHHHH-H-HHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred chHHHHHHHHHcCCCHHHHHHH-H-HHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3457788888889887655555 2 3343333 2347999999999999999999997654
No 152
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.65 E-value=0.0013 Score=70.46 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
+.+.+|+|.|++||||||+|+.||++|+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999986
No 153
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.64 E-value=0.0014 Score=63.63 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=29.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..+.|.+++++|+||+||||+|+.+++.++..++
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 3456778999999999999999999999986654
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.63 E-value=0.00096 Score=60.26 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
|.++.|.||+||||||+++.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999997763
No 155
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.62 E-value=0.0017 Score=59.47 Aligned_cols=40 Identities=30% Similarity=0.342 Sum_probs=30.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNV-LQTDMVY 196 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V-i~tD~ir 196 (498)
...+.+|.|+|++||||||+++.|+..+ |...+ ...|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 3467899999999999999999999876 55433 3445543
No 156
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.59 E-value=0.0014 Score=61.89 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..+.+|.|.|++||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 456799999999999999999999988855
No 157
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.55 E-value=0.0016 Score=64.64 Aligned_cols=30 Identities=30% Similarity=0.213 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~ 188 (498)
.|.-|+|.|+||+|||++|+.+|..+ +...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 45789999999999999999999998 5554
No 158
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.55 E-value=0.00057 Score=64.42 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|.-++|.|+||+|||++|+.++..++.+.+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 4555899999999999999999999987653
No 159
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.54 E-value=0.0014 Score=62.90 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
...|+|+|++|+||||+|..|+++.+ .+++.|.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~ 67 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH--RLIADDRV 67 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC--EEEESSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC--eEEecchh
Confidence 56799999999999999999998876 56677753
No 160
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.53 E-value=0.0017 Score=65.09 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.|..|+|.|+||+|||++|+.+|..++.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 45778999999999999999999999998764
No 161
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.52 E-value=0.0012 Score=58.71 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..++|.|+||+||||+++.++..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999876
No 162
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0028 Score=62.14 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=25.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...|..++|.|+||+||||+|+.++..+
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999999999987
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.52 E-value=0.0018 Score=63.12 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
..+..++|.|+||+|||++|+.++.+++.+++.
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 345578999999999999999999999988653
No 164
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.52 E-value=0.0016 Score=64.96 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
.+..|+|.|+||+|||++|+.||+.++.+.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 35578999999999999999999999988653
No 165
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.52 E-value=0.0023 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++|.|++|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 166
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.47 E-value=0.0017 Score=64.16 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=26.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+|.+|.|+|++||||||+++.|+..++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45789999999999999999999998885
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.45 E-value=0.0024 Score=59.87 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|.-++|.|+|||||||+++.++..++...+
T Consensus 48 ~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 48 IPKGVLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3445999999999999999999999886654
No 168
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.45 E-value=0.0036 Score=61.64 Aligned_cols=28 Identities=43% Similarity=0.679 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+.+|.|.|++||||||+++.|+..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999998776
No 169
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.45 E-value=0.0026 Score=60.73 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~m 199 (498)
-..|-++|..||||||+++.|++ +|++++.++...++.+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~ 47 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRIT 47 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHh
Confidence 45789999999999999999997 9999865444455544
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.44 E-value=0.0016 Score=65.43 Aligned_cols=31 Identities=29% Similarity=0.266 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|.-|+|+|+||+|||++|+.+|..++.+.+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 3567899999999999999999999998765
No 171
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.44 E-value=0.0066 Score=58.03 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
|.-++|.|+|||||||+++.|+..++...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 444999999999999999999999886654
No 172
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.44 E-value=0.0017 Score=64.32 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
.|..++|.|+||+||||+++.+|..+|...
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 456789999999999999999999998764
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.42 E-value=0.0025 Score=62.57 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
+..++|.|+||+|||++|+.++..++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999975
No 174
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.41 E-value=0.004 Score=59.50 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.9
Q ss_pred CCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPL-VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~-iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+|. .++|.|+||+||||+|+.|+..+
T Consensus 44 ~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 44 NRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3454 79999999999999999999987
No 175
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.37 E-value=0.0042 Score=64.34 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC--CCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN--LPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg--l~~V 189 (498)
.|.-+++.||||+|||++|+.+|..+| ++++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~ 94 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFC 94 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence 457899999999999999999999998 6554
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.36 E-value=0.0021 Score=58.03 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
|..++|.|++|+||||+|..++..+
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999877
No 177
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.35 E-value=0.0024 Score=62.00 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ire~mr 200 (498)
++|.|+|.+||||||+|..|+.++|++.+..+|.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 4899999999999999999999899998766787776543
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.31 E-value=0.007 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.-|+|.|+||+|||++|+.++...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3447999999999999999998865
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.29 E-value=0.0036 Score=61.08 Aligned_cols=31 Identities=42% Similarity=0.510 Sum_probs=26.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.+.|..++|.|++|+||||+|+.+++.+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456789999999999999999999998754
No 180
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.28 E-value=0.0028 Score=63.86 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+.-|||.|+||+|||++|+.+|.+++.+++
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 4578999999999999999999999998765
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.26 E-value=0.0042 Score=60.44 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~ 188 (498)
.+..++|.|+||+||||+|+.++..+ +.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~ 68 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRV 68 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 34568999999999999999999988 6554
No 182
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0033 Score=63.42 Aligned_cols=38 Identities=5% Similarity=0.001 Sum_probs=31.0
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 147 RYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 147 rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-|..+........|..++|.|+||+|||++++.++..+
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444455556788899999999999999999999988
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0028 Score=66.75 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+..++|+|+||+||||+|+.+|+.+|+..+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3568999999999999999999999998764
No 184
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.17 E-value=0.005 Score=58.77 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC---CCeEEcchhHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN---LPNVLQTDMVYELL 199 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg---l~~Vi~tD~ire~m 199 (498)
.+++|+|+|.|||||+|+|..|.+++| +..|..+|.+++..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~ 53 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQY 53 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHH
Confidence 457999999999999999999998885 56667889999643
No 185
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.16 E-value=0.0023 Score=58.77 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+.++.|+||+||||||+.+.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45789999999999999999987653
No 186
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.13 E-value=0.0034 Score=59.41 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.4
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 156 HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 156 ~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+.....++.|.||+||||||+.+.|+..+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345667999999999999999999998764
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.12 E-value=0.0029 Score=57.92 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.+.|.|++||||||+.+.|+..+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68899999999999999999988744
No 188
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.09 E-value=0.0034 Score=70.73 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|+-||+.||||||||++|+.+|.++|+..+.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~ 268 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 468899999999999999999999999988653
No 189
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.09 E-value=0.0048 Score=65.33 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.|.-|+|.|+||+|||++|+.++.+++.+++
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv 267 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 45778999999999999999999999998765
No 190
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.07 E-value=0.0038 Score=58.92 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
++.+|+|+||+|+||||+++.|+..+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998764
No 191
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0028 Score=61.56 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+..++|.|+||+||||+++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999987
No 192
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.06 E-value=0.0026 Score=61.14 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+..++|.|+||+||||+|+.++..++.+.+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999987754
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.06 E-value=0.004 Score=64.50 Aligned_cols=30 Identities=30% Similarity=0.213 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCe
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPN 188 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L-gl~~ 188 (498)
.|.-|+|.|+||+|||++|+.+|..+ +.+.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~ 196 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTF 196 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCE
Confidence 45789999999999999999999998 6554
No 194
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.01 E-value=0.0044 Score=53.90 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.-|+|.|+||+|||++|+.++...+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3478999999999999999988766
No 195
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.99 E-value=0.0047 Score=65.46 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.|.-|+|.|+||+||||+|+.++.+++.+++
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~~~~~~f~ 78 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFF 78 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 45667999999999999999999999998865
No 196
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.99 E-value=0.0038 Score=60.48 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=25.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...+..++|.|++|+||||+++.++..+
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999987
No 197
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.98 E-value=0.0049 Score=57.20 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=17.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH-Hhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLA-QRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA-~~L 184 (498)
...+|.|.|++||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35689999999999999999999 655
No 198
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.0055 Score=60.29 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+.|. ++|.|+||+||||+|+.++..+.
T Consensus 44 g~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 44 GKLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp TCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 34454 89999999999999999999874
No 199
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.96 E-value=0.0054 Score=64.08 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+..++|.|+||+||||+|+.++..++...+
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 3457899999999999999999999987754
No 200
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.93 E-value=0.0037 Score=58.34 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.|+|+||||+||||+++.|.+++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998876
No 201
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.92 E-value=0.0071 Score=59.90 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=30.7
Q ss_pred HHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 152 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 152 ~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..+...+.|..+++.|++|+||||+|+.+|+.+.+..
T Consensus 16 ~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 16 ASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp HHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred HHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 3344556688899999999999999999999997654
No 202
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.92 E-value=0.0047 Score=61.61 Aligned_cols=28 Identities=46% Similarity=0.623 Sum_probs=25.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+.+.+|.|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4567899999999999999999999876
No 203
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.0061 Score=58.99 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 010885 163 ILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
++|.|+||+||||+|+.++..++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999874
No 204
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.90 E-value=0.0099 Score=58.02 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++|.|++|+||||+++.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999988
No 205
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.90 E-value=0.0038 Score=60.82 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
-++|.|+||+|||++|+.++..++.+.+
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 5899999999999999999999987753
No 206
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.90 E-value=0.013 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
..++|.||||+||||+|..|++.++-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998853
No 207
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.86 E-value=0.0084 Score=63.91 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
..+.+++|.|+|||||||+|+.|+..++.+.+
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 35668999999999999999999999976643
No 208
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.82 E-value=0.0073 Score=57.51 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.++|.|++|+||||+|+.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999874
No 209
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.0074 Score=57.38 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+.|. ++|.|++|+||||+|+.+++.+.
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence 4455 99999999999999999999873
No 210
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.78 E-value=0.0064 Score=55.74 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
...++.|.|++||||||+.+.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998764
No 211
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.78 E-value=0.0052 Score=57.36 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...++.|+|++||||||+++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999866
No 212
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.74 E-value=0.0059 Score=56.37 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+|.|+|++||||||++..|+..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999876
No 213
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.69 E-value=0.0065 Score=57.66 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+.|. ++|.|++|+||||+|+.+++.+.
T Consensus 37 ~~~~-~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 37 NIPH-LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CCCC-EEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCe-EEEECcCCcCHHHHHHHHHHHhc
Confidence 3344 89999999999999999999873
No 214
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.68 E-value=0.0067 Score=58.77 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 163 ILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 163 IlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
++|.|+||+|||++|+.++..++-
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCccHHHHHHHHHHhCcc
Confidence 899999999999999999998863
No 215
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.68 E-value=0.0053 Score=59.86 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.|. ++|.|++|+||||+++.|+..+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 4466 9999999999999999999965
No 216
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.62 E-value=0.0068 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|+|||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998743
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.59 E-value=0.0066 Score=55.71 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
..-++.|.|+|||||||+++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 44689999999999999999988
No 218
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.57 E-value=0.0073 Score=54.45 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...+++|.|+||+||||++..|+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998654
No 219
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.56 E-value=0.0064 Score=65.55 Aligned_cols=42 Identities=36% Similarity=0.431 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC----CCe-EEcchhHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLN----LPN-VLQTDMVYELL 199 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lg----l~~-Vi~tD~ire~m 199 (498)
.++.+|+|+|++||||||+++.|+..++ ... ++.+|.+++.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l 413 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL 413 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh
Confidence 3567999999999999999999999985 222 35778877654
No 220
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.49 E-value=0.0092 Score=61.41 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=28.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
-+.+.+|+|.|+||+||||+++.|+..++...+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 345679999999999999999999998876543
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.49 E-value=0.02 Score=54.01 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+..|+|.|+||+|||++|+.++..++
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 44578999999999999999998874
No 222
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.47 E-value=0.015 Score=60.32 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..++|.|+||+||||+|+.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999987
No 223
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.42 E-value=0.0094 Score=53.71 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
++..+++|.|+||+||||++..|+...+-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 46 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGK 46 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCS
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34569999999999999999999874443
No 224
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.41 E-value=0.0071 Score=56.56 Aligned_cols=26 Identities=38% Similarity=0.332 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
+|+|.|.+||||||+|..|+.. |.+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 3799999999999999999987 7654
No 225
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.37 E-value=0.016 Score=52.56 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+.+|+|+|.+|+||||+...|+..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 566899999999999999999998753
No 226
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.36 E-value=0.0077 Score=62.06 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
...|+|.|+||+||||+++.||..+++.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34688999999999999999999998765
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.32 E-value=0.0064 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
....++|.|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999877
No 228
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.31 E-value=0.0076 Score=56.93 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~i 195 (498)
.-|+|.|+||+||||+|..|.. .|... +++|.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~-rG~~l-vaDD~v 49 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID-RGHQL-VCDDVI 49 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH-TTCEE-EESSEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeE-ecCCEE
Confidence 4689999999999999999987 47764 567654
No 229
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.29 E-value=0.013 Score=53.37 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++.+|+|+|.+|+||||++..|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456788889999999999999999875
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.25 E-value=0.014 Score=62.28 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.|.-++|.|+||+||||+|+.++..++.+.+
T Consensus 63 ip~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4556999999999999999999999987754
No 231
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.24 E-value=0.01 Score=66.31 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+.|..|+|+|+|||||||+|+.|+..++...+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 45778999999999999999999999987754
No 232
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.17 E-value=0.013 Score=53.91 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+++|+|++||||||+...|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998764
No 233
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.17 E-value=0.013 Score=54.83 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
..+++++++|+||||||++|..++..
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999887544
No 234
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.13 E-value=0.015 Score=54.31 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=26.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc--CCCe
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL--NLPN 188 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L--gl~~ 188 (498)
..++.++++.|.+|+||||++..|+..+ |.+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v 44 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKV 44 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 4567899999999999999999999766 5443
No 235
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.13 E-value=0.02 Score=59.68 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+..++|.|+||+|||++|+.|+..+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 444567899999999999999999987
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.07 E-value=0.012 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...+++|.|+||+||||++..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4469999999999999999999984
No 237
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.06 E-value=0.048 Score=54.65 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..++.+|.|+|.||+||||++..|+..+
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998876
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.05 E-value=0.011 Score=66.67 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi 190 (498)
+.|.-||+.||||||||.+|+++|.+++.+.+.
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~ 541 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEE
Confidence 346679999999999999999999999998764
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.98 E-value=0.019 Score=51.81 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..-++.|.|++|+||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999877
No 240
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.98 E-value=0.013 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...+++|+|+||+||||++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999998887643
No 241
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.95 E-value=0.011 Score=55.35 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+++.+|.|.|++||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999999876
No 242
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.95 E-value=0.016 Score=51.31 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
|-+.+|+|++||||||+..+|.-.++.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 448999999999999999999887763
No 243
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.87 E-value=0.016 Score=53.08 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+++++|++|+||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999998887765
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.87 E-value=0.04 Score=60.19 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=26.8
Q ss_pred CCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPL-VILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~-iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
+|. .++|.|+||+|||++|+.|+..++.+.+
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 454 7999999999999999999999986643
No 245
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.83 E-value=0.013 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999876
No 246
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.83 E-value=0.026 Score=54.76 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..-+++|+|++||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344589999999999999999998765
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.81 E-value=0.016 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+..++|.|+||+|||++|..++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999998653
No 248
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.79 E-value=0.042 Score=58.52 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
-|+|.|+||+|||++|+.|+..++.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred eeEeecCchHHHHHHHHHHHHHHhh
Confidence 5899999999999999999998853
No 249
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.76 E-value=0.033 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.8
Q ss_pred CCCeEEEE--EcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILV--CGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI--~G~pGSGKSTlA~~LA~~L 184 (498)
..+..++| .|++|+||||+++.+++.+
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 45778888 9999999999999999876
No 250
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.74 E-value=0.018 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
+++..|++.|.+|+||||+...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999998775
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.64 E-value=0.017 Score=55.54 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-+++|+|+||+||||++..|+..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44599999999999999999998765
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.59 E-value=0.031 Score=61.30 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+.-++|.|+||+|||++|+.||..+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445568999999999999999999997
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.55 E-value=0.017 Score=55.09 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+.-+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999997544
No 254
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.51 E-value=0.024 Score=48.05 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|++.|.+|+||||+...|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999975
No 255
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.49 E-value=0.011 Score=54.01 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++.|+|++||||||++..|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998876
No 256
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.40 E-value=0.021 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..+++|.|+|||||||++..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
No 257
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.36 E-value=0.027 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..|++.|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998754
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.34 E-value=0.018 Score=54.34 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3488999999999999999997544
No 259
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.31 E-value=0.026 Score=47.28 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
..|++.|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999764
No 260
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.29 E-value=0.044 Score=60.12 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.6
Q ss_pred CCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPL-VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~-iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+|. .++|.|+||+|||++|+.|+..+
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 454 69999999999999999999987
No 261
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.29 E-value=0.036 Score=47.16 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+++..|++.|.+|+||||+...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 262
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.28 E-value=0.023 Score=56.85 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPN 188 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~ 188 (498)
..+.|.|++||||||+++.|+..+....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4789999999999999999998876543
No 263
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.25 E-value=0.03 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+++..|++.|.+|+||||+...|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4677899999999999999999864
No 264
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.23 E-value=0.026 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.++..|++.|.+|+||||+..+|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556899999999999999999975
No 265
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.22 E-value=0.027 Score=53.82 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+++|.|++|+||||++..+++++++.++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~ 60 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILI 60 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEE
Confidence 48999999999999999999998874443
No 266
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.22 E-value=0.029 Score=48.11 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+.+..|+++|.+|+||||+...|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999998753
No 267
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.21 E-value=0.037 Score=47.98 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+.+..|+|+|.+|+|||||...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999764
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.19 E-value=0.026 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-++.|.|++||||||+.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998654
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.18 E-value=0.022 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997543
No 270
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.17 E-value=0.035 Score=47.70 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.++..|++.|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999864
No 271
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.16 E-value=0.03 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..+++|+|.||+|||++|..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4469999999999999999987643
No 272
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.16 E-value=0.013 Score=65.63 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~V 189 (498)
.+..++|.|+|||||||+|+.||..++...+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567999999999999999999999986643
No 273
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.15 E-value=0.029 Score=48.97 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+..|++.|.+|+||||+...|..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 274
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.15 E-value=0.033 Score=50.15 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+..|++.|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998754
No 275
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.14 E-value=0.031 Score=47.08 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..|++.|.+|+||||+...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999754
No 276
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.037 Score=48.63 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+..|++.|.+|+||||+...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998643
No 277
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.09 E-value=0.032 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|+|.|.+|+|||||..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 346799999999999999999864
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.02 E-value=0.029 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.-++.|.|++||||||+.+.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999863
No 279
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.00 E-value=0.032 Score=48.37 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..|+|.|++|+||||+...|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999974
No 280
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.99 E-value=0.037 Score=47.57 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
++..|+|.|.+|+||||+...|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999998753
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.97 E-value=0.025 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+.-+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 282
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.93 E-value=0.026 Score=53.77 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998654
No 283
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.92 E-value=0.031 Score=56.93 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-+|+|+|++||||||+.+.|+..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999998766
No 284
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.91 E-value=0.035 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|.|.|++|+||||+...|+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 285
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.91 E-value=0.038 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..|++.|.+|+||||+...|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 286
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.91 E-value=0.038 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.|++.|.+|+||||+...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 287
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.91 E-value=0.027 Score=53.69 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999997644
No 288
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.90 E-value=0.026 Score=55.37 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3489999999999999999998654
No 289
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.90 E-value=0.036 Score=56.41 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-+++|+|++||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44589999999999999999998866
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.89 E-value=0.023 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
-++.|.|++||||||+.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999853
No 291
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.89 E-value=0.027 Score=54.87 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+.-+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3489999999999999999998654
No 292
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.89 E-value=0.027 Score=54.22 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999997654
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.87 E-value=0.035 Score=55.59 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44689999999999999999999877
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.85 E-value=0.032 Score=54.12 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.-++.|.|++||||||+.+.|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.83 E-value=0.04 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|++|+||||+...|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 296
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.83 E-value=0.045 Score=52.28 Aligned_cols=26 Identities=42% Similarity=0.528 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+++|.|++|+||||++..++++++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 89999999999999999999987644
No 297
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.82 E-value=0.028 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999997654
No 298
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.81 E-value=0.029 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999997654
No 299
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.78 E-value=0.039 Score=49.54 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++...|++.|.+|+||||+..+|....
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998644
No 300
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.72 E-value=0.035 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
..|++.|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999998753
No 301
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.72 E-value=0.052 Score=47.91 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
..+..|++.|.+|+||||+..+|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998643
No 302
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.69 E-value=0.037 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+++|.|+||+||||+|..++...|
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G 148 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG 148 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC
Confidence 45789999999999999999998644
No 303
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.66 E-value=0.043 Score=46.99 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|++.|.+|+||||+...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999764
No 304
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.66 E-value=0.038 Score=47.03 Aligned_cols=25 Identities=20% Similarity=0.602 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|++.|.+|+||||+...|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999998753
No 305
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.66 E-value=0.031 Score=54.46 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34589999999999999999998654
No 306
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.64 E-value=0.04 Score=47.67 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|+|+|.+|+|||||...|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999975
No 307
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.61 E-value=0.18 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+.+|.|+|+.|+||||+|..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999996
No 308
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.60 E-value=0.027 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999997654
No 309
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.60 E-value=0.032 Score=54.34 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++|||||||.+.|+..+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999997654
No 310
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.59 E-value=0.035 Score=47.72 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|++.|.+|+||||+...|...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999753
No 311
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.59 E-value=0.033 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..-++.|.|++||||||+.+.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999997644
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.59 E-value=0.043 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
...|++.|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999999975
No 313
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.57 E-value=0.043 Score=46.53 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+..|++.|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999875
No 314
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.57 E-value=0.063 Score=58.65 Aligned_cols=27 Identities=41% Similarity=0.464 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+..++|+|+||+||||+|+.|+.++
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999987
No 315
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.56 E-value=0.033 Score=53.94 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999998654
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.56 E-value=0.037 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|++.|.+|+||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999754
No 317
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.55 E-value=0.038 Score=47.85 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
++..|++.|.+|+||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999754
No 318
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.52 E-value=0.034 Score=53.90 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998654
No 319
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.47 E-value=0.035 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999997544
No 320
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.46 E-value=0.038 Score=61.67 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.+..++|+|+||+||||+|+.||.++
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 344567899999999999999999987
No 321
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.46 E-value=0.051 Score=52.00 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
+-.+++++|++|+||||++..++.++ |...++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli 45 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV 45 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 35799999999999999999998887 545443
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.45 E-value=0.035 Score=54.46 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999998654
No 323
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.45 E-value=0.037 Score=46.81 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|++.|.+|+||||+...|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999975
No 324
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.44 E-value=0.15 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..+..|+++|.||+||||+...|+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999864
No 325
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.43 E-value=0.041 Score=48.21 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..|+++|.+|+||||+...|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999999754
No 326
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.42 E-value=0.064 Score=48.23 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=24.3
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHH
Q 010885 150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 150 L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
++..+.-..++..|++.|.+|+||||+..+|.
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 33344333456789999999999999999885
No 327
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.39 E-value=0.043 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+.|.|++|+||||+.+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998765
No 328
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.39 E-value=0.051 Score=49.00 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
...+..|++.|.+|+||||+...|..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 34578899999999999999998874
No 329
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.36 E-value=0.081 Score=51.34 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV 189 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V 189 (498)
-..|++.|++|+||||++..+|..+ |...+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 4679999999999999999998876 76653
No 330
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.33 E-value=0.047 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+..|+|.|+||+|||++|+.++...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34568999999999999999999854
No 331
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.32 E-value=0.034 Score=56.21 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.+++|+|++||||||+.+.|+..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3789999999999999999988764
No 332
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.31 E-value=0.052 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
....|+|.|.+|+|||||...|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999754
No 333
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.30 E-value=0.067 Score=59.74 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.6
Q ss_pred CCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPL-VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~-iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+|. .++|.|+||+|||++|+.|+..+
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 453 89999999999999999999988
No 334
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.28 E-value=0.039 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4488999999999999999997544
No 335
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.24 E-value=0.065 Score=47.02 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..+..|++.|.+|+||||+...|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4567899999999999999999976
No 336
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.24 E-value=0.051 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...|++.|.+|+||||+...|...-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999997643
No 337
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.23 E-value=0.056 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|++.|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999753
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.23 E-value=0.056 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|++.|.+|+||||+...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3467999999999999999999753
No 339
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.18 E-value=0.053 Score=48.02 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+....|+|.|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999998754
No 340
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.17 E-value=0.046 Score=46.84 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
....|+|.|.+|+||||+...|.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 34679999999999999999885
No 341
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.15 E-value=0.048 Score=55.75 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..+++|+|+|||||||++..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998764
No 342
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.13 E-value=0.046 Score=48.25 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..|+|.|.+|+|||||...|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999874
No 343
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.13 E-value=0.061 Score=45.77 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..|++.|.+|+||||+...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999863
No 344
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.11 E-value=0.034 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
.....|.|.|++|+||||+...|+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999999875
No 345
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.09 E-value=0.052 Score=54.88 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ir 196 (498)
..-++|.|+||+||||+|..|..+ |... +++|.+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l-v~dD~~~ 178 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL-VADDNVE 178 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE-EESSEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce-ecCCeEE
Confidence 346999999999999999999875 7764 4666543
No 346
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.07 E-value=0.049 Score=58.50 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
..++|.|+|||||||+|+.|+..+...
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 368999999999999999999988543
No 347
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.06 E-value=0.07 Score=45.99 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
++..|++.|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999988753
No 348
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.06 E-value=0.054 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|++.|.+|+||||+...|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999998753
No 349
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.06 E-value=0.096 Score=54.48 Aligned_cols=27 Identities=41% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
.--+|+|+|++||||||+...|+..+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 345899999999999999999988774
No 350
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.05 E-value=0.056 Score=47.46 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
....|++.|.+|+||||+...|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998764
No 351
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.05 E-value=0.053 Score=46.70 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|++.|.+|+||||+...|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999874
No 352
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.01 E-value=0.08 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..+|.|+|+||+||||+...|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998754
No 353
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.98 E-value=0.046 Score=53.25 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998654
No 354
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.97 E-value=0.058 Score=47.49 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|+|+|.+|+|||||...|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999998763
No 355
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.95 E-value=0.1 Score=48.60 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
+-.+++++|++|+||||.+..++.++ |...++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v 41 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQV 41 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 35799999999999999999999987 666554
No 356
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.92 E-value=0.082 Score=52.41 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..+++.|++|+||||+|..|++.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999999999853
No 357
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.89 E-value=0.051 Score=55.72 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-++.|.|++||||||+.+.|+--+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 488999999999999999998654
No 358
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.87 E-value=0.07 Score=46.28 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|.+|+||||+...|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999854
No 359
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.86 E-value=0.06 Score=54.22 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...++.|+|+|||||||++..|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999999876
No 360
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.83 E-value=0.054 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+..|++.|.+|+||||+...|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 361
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.80 E-value=0.054 Score=47.01 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
....|++.|.+|+||||+...|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999998753
No 362
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.79 E-value=0.074 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|.+|+|||||...|...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998754
No 363
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.78 E-value=0.078 Score=47.23 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+.+..|+|+|.+|+||||+...|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999753
No 364
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.76 E-value=0.083 Score=46.83 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
....|++.|.+|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999764
No 365
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.76 E-value=0.061 Score=45.65 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA 181 (498)
..|++.|.+|+||||+...|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999884
No 366
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.72 E-value=0.077 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
++...|++.|.+|+||||+...|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4577899999999999999999974
No 367
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.67 E-value=0.061 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+--+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3488999999999999999998654
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.65 E-value=0.082 Score=44.75 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.|++.|.+|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 369
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.65 E-value=0.062 Score=54.95 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+--+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3588999999999999999998654
No 370
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.64 E-value=0.074 Score=52.50 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
++.-+++|+|.||+||||++..+|...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999998654
No 371
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.64 E-value=0.068 Score=46.75 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|+|.|.+|+||||+...|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999753
No 372
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.63 E-value=0.086 Score=52.83 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
....++.|.|+||+||||+...|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998655
No 373
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.63 E-value=0.059 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..+++|.|+||+||||++..++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998654
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.62 E-value=0.07 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
...|++.|.+|+||||+...|..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999998864
No 375
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.62 E-value=0.062 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+--+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3588999999999999999998654
No 376
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.61 E-value=0.062 Score=55.55 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+--+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3488999999999999999998654
No 377
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.60 E-value=0.072 Score=54.30 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++..|+|.|.+||||||++++|.--+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 567889999999999999999995433
No 378
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.59 E-value=0.086 Score=45.79 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...|+|.|.+|+|||||.+.|....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4679999999999999998887654
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.53 E-value=0.042 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 162 VILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+++|+|++||||||+.+.|+..+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 789999999999999999987663
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.51 E-value=0.19 Score=50.09 Aligned_cols=28 Identities=32% Similarity=0.271 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.....+|.|.|+||+||||+...|+..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3567789999999999999999998765
No 381
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.50 E-value=0.068 Score=54.38 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..+++|+|+||+||||+|..++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998754
No 382
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.49 E-value=0.08 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
++..|+|+|.+|+|||||...|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999998753
No 383
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.47 E-value=0.056 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
++..|+|.|.+|+||||+...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999873
No 384
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.46 E-value=0.07 Score=47.10 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
..+..|++.|.+|+||||+...|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999998753
No 385
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.46 E-value=0.073 Score=47.00 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
++..|+|+|.+|+|||||...|...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999753
No 386
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.45 E-value=0.088 Score=52.65 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+...+++|+|+||+||||++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999999999986
No 387
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.44 E-value=0.068 Score=54.79 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+--+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3488999999999999999998654
No 388
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.44 E-value=0.069 Score=52.20 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+...+++|+|+||+||||+|..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999875
No 389
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.43 E-value=0.068 Score=54.91 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+--+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3588999999999999999998654
No 390
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.42 E-value=0.072 Score=52.61 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...+++|+|+||+||||++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45699999999999999999999764
No 391
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.42 E-value=0.086 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
..|++.|.+|+||||+...|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998654
No 392
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.41 E-value=0.063 Score=54.24 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lgl~~Vi~tD~ir 196 (498)
..-|+|.|+||+||||+|..|.. .|... +++|.+.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~l-v~DD~v~ 181 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLF-VGDDAIE 181 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEE-EEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEE-EeCCEEE
Confidence 34699999999999999999864 57664 5777654
No 393
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.39 E-value=0.057 Score=53.38 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999997543
No 394
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.39 E-value=0.076 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+...|+|.|.+|+||||+...|..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 456899999999999999999875
No 395
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.38 E-value=0.1 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..++.+.|+||+||||+.+.|+ .+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4588999999999999999998 553
No 396
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.31 E-value=0.17 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++|.|++||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998877
No 397
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.29 E-value=0.087 Score=46.70 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
....|+|.|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4468999999999999999988754
No 398
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.28 E-value=0.099 Score=46.45 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
....|+|+|.+|+|||||...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999874
No 399
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.28 E-value=0.096 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
|-+.+|.|++|+||||+..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999987655
No 400
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.26 E-value=0.079 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|+|.|.+|+||||+...|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 457899999999999999999874
No 401
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.22 E-value=0.083 Score=46.03 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..|+|+|.+|+||||+...|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999754
No 402
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.22 E-value=0.08 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.|++.|.+|+||||+...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999998753
No 403
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.18 E-value=0.094 Score=46.77 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
++...|++.|.+|+||||+...|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999885
No 404
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.18 E-value=0.078 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+...|++.|.+|+||||+...|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999975
No 405
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.16 E-value=0.092 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
+++..|++.|.+|+||||+...|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 457789999999999999999873
No 406
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.16 E-value=0.056 Score=55.01 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+--+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3589999999999999999998654
No 407
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.13 E-value=0.099 Score=46.41 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+...|+|.|.+|+|||||...|...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999888753
No 408
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.10 E-value=0.046 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|+|++||||||+.+.|+..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4589999999999999999997655
No 409
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.09 E-value=0.074 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
-.++.|+|+||||||||+..|+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 459999999999999999988643
No 410
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.04 E-value=0.09 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
...|+|+|.+|+||||+...|..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999874
No 411
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.02 E-value=0.072 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|++.|.+|+||||+..+|...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999763
No 412
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.98 E-value=0.083 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+.-+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3489999999999999999998654
No 413
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.96 E-value=0.11 Score=46.02 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
....|+|+|.+|+||||+...|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998864
No 414
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.93 E-value=0.079 Score=54.75 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+.-+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3489999999999999999998543
No 415
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.91 E-value=0.066 Score=57.07 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..+++|+|++||||||+.+.|+..+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44699999999999999999987663
No 416
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.88 E-value=0.083 Score=46.79 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+...|+|+|.+|+||||+...|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3568999999999999999999754
No 417
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.87 E-value=0.1 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..+.+|+|.|++|+||||+|..++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3467999999999999999999864
No 418
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.86 E-value=0.094 Score=45.98 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
.+..|+|.|.+|+|||||...|.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999885
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.84 E-value=0.096 Score=46.20 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|.+|+||||+...|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999998753
No 420
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.13 Score=55.95 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=24.7
Q ss_pred HhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 153 RFHHQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 153 ~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+...+.+..|+|+|.+|+|||||..+|....
T Consensus 160 ~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 160 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp -CCCCCCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred HHhccCCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 33334456789999999999999999997543
No 421
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.70 E-value=0.055 Score=55.07 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+--+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.68 E-value=0.12 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
...|+|.|.+|+|||||...|...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 423
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.68 E-value=0.11 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|+|.|.+|+||||+...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999743
No 424
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.66 E-value=0.095 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
....|+|.|.+|+|||||...|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999865
No 425
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.64 E-value=0.1 Score=47.38 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
++..|+++|.+|+||||+...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999999863
No 426
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.58 E-value=0.12 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
...|+|+|.+|+|||||...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999864
No 427
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.56 E-value=0.11 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 010885 161 LVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+.|.+.|+||+||||+...|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999643
No 428
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.55 E-value=0.081 Score=55.66 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
..++.|.|++||||||+.+.|+..+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3478899999999999999998765
No 429
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.51 E-value=0.045 Score=59.16 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.-|+|.|+||+|||++|+.++..++..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCc
Confidence 368999999999999999999887643
No 430
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.49 E-value=0.13 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|+|+|.+|+||||+...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999998864
No 431
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.48 E-value=0.18 Score=48.59 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
+.+++|.|+|-.|+||||+|..||..| |.+.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vll 74 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 74 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 456788888999999999999998876 666543
No 432
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.47 E-value=0.095 Score=46.08 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+...|++.|.+|+||||+...|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999988543
No 433
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.42 E-value=0.34 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|+|+|.||+||||+...|..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~ 255 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLG 255 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999998864
No 434
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.32 E-value=0.12 Score=47.09 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
....|+|.|.+|+|||||...|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999763
No 435
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.32 E-value=0.12 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.-+++|+|+||+||||++..++..+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44599999999999999999988754
No 436
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.31 E-value=0.098 Score=46.86 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|+|.|.+|+|||||...|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999863
No 437
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=91.26 E-value=0.36 Score=48.69 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 121 DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 121 ~I~q~eLe~~V~~lL~~~~yge~~a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
.+++++.++.+..+-.+ -..+-..++..+.|++|+|-|.-||||+|.++.|...|+-.
T Consensus 56 ~~~k~~y~~~l~~lq~~---------L~~lQ~~~~~~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldpr 113 (304)
T 3czq_A 56 KLDREEYEETLTKLQIE---------LVKVQFWMQATGKRVMAVFEGRDAAGKGGAIHATTANMNPR 113 (304)
T ss_dssp CCCHHHHHHHHHHHHHH---------HHHHHHHHHHHCCCEEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred cCCHHHHHHHHHHHHHH---------HHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 56777777766555333 12233333445679999999999999999999999999533
No 438
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.20 E-value=0.099 Score=46.96 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA 181 (498)
...|+|.|.+|+|||||..+|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999885
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.17 E-value=0.12 Score=47.88 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
.|-+.+|+|++|+||||+..+|.-.++.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3668999999999999999998766644
No 440
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.15 E-value=0.085 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+++|.|++||||||+.+.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 378999999999999999998643
No 441
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=91.09 E-value=0.082 Score=53.73 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNLP 187 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl~ 187 (498)
+++.|.|-|+-||||||+++.|++.++..
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999999998643
No 442
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.08 E-value=0.098 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.++.+.|+|||||||+.+.|+..+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 488999999999999999997433
No 443
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.00 E-value=0.32 Score=48.76 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=30.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE-Ecchh
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNV-LQTDM 194 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V-i~tD~ 194 (498)
.....++++.|-.|+||||+|..||..+ |.+.+ +.+|.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4456789999999999999999998876 76654 35565
No 444
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.99 E-value=0.07 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=10.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA 181 (498)
...|+|.|.+|+||||+...|.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEEECCCCC----------
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998875
No 445
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.96 E-value=0.13 Score=46.27 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|++.|.+|+||||+...|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 346799999999999999999875
No 446
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.92 E-value=0.12 Score=47.00 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
....|+|.|.+|+||||+...|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999998753
No 447
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.83 E-value=0.83 Score=58.54 Aligned_cols=64 Identities=11% Similarity=0.216 Sum_probs=46.0
Q ss_pred hcCcccccHHHHHHHHHHHHHhcCCChh------hHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 116 DNSLLDVSQSDLEANLFKLMERRGYGEE------YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 116 ~~~v~~I~q~eLe~~V~~lL~~~~yge~------~a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
+-..+.....+|++.|.+.+.+.++... .++-|.++ ..-.=++++|++||||||.-+.|++.+.
T Consensus 862 gv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~------~vRhGvmlVGp~gsGKTt~~~~L~~al~ 931 (3245)
T 3vkg_A 862 GSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQIL------NINHGVMMVGPSGGGKTTSWEVYLEAIE 931 (3245)
T ss_dssp TCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH------TTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHH------HheeeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445566778899999999988777532 13333331 2223589999999999999999998874
No 448
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.82 E-value=0.2 Score=50.37 Aligned_cols=37 Identities=41% Similarity=0.441 Sum_probs=29.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE-Ecch
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNV-LQTD 193 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V-i~tD 193 (498)
.+.+.++++.|-.|+||||+|..||..+ |.+.+ +.+|
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3456799999999999999999999877 55543 3445
No 449
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.74 E-value=0.13 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+...|++.|.+|+|||||...|..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999987754
No 450
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.73 E-value=0.15 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..|+|.|.+|+||||+...|..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999853
No 451
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.65 E-value=0.13 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+..+++|+|+||+||||+|..++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 45689999999999999999998754
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.64 E-value=0.14 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~Lg 185 (498)
..++.|.|+||+|||||...|+..+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34889999999999999999985443
No 453
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.60 E-value=0.2 Score=49.47 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE-Ecchh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV-LQTDM 194 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V-i~tD~ 194 (498)
..++++.|-.|+||||+|..||..+ |.+.+ +.+|.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5789999999999999999998766 66654 34554
No 454
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.60 E-value=0.16 Score=45.34 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
....|+|.|.+|+||||+...|..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999998875
No 455
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.01 E-value=0.048 Score=48.69 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 157 QRVPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 157 ~r~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+++..|++.|.+|+||||+...|..
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34567899999999999999988753
No 456
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.57 E-value=0.15 Score=48.30 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.++.|+|.|.+|+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 467899999999999999998864
No 457
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.56 E-value=0.15 Score=45.63 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
+..|++.|.+|+||||+...|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998753
No 458
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.56 E-value=0.17 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|+|.+|+|||||...|...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999998753
No 459
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.49 E-value=0.13 Score=54.17 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQL 180 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~L 180 (498)
...+++|.|+|||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4458999999999999999994
No 460
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.43 E-value=0.17 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|++.|.+|+||||+...|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 461
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.43 E-value=0.14 Score=55.21 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE------cchhHHHHHh
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NLPNVL------QTDMVYELLR 200 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi------~tD~ire~mr 200 (498)
+.+|.||||+|||+++..+...+ |.+.++ +.|.+.+.+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHH
Confidence 67999999999998877766555 554333 3466666554
No 462
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.39 E-value=0.14 Score=45.98 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|.+|+||||+...|...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 467999999999999999999753
No 463
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.37 E-value=0.16 Score=52.41 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.-+++|+|+||+||||++..+|...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44699999999999999999998754
No 464
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.36 E-value=0.16 Score=54.78 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
..+++|.|+||+||||++..|+..+ |.+.++
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4589999999999999999998755 555544
No 465
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.34 E-value=0.55 Score=59.25 Aligned_cols=57 Identities=16% Similarity=0.326 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHHHHhcCCChh--h----HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 122 VSQSDLEANLFKLMERRGYGEE--Y----ISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 122 I~q~eLe~~V~~lL~~~~yge~--~----a~rY~L~~~~~~~r~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
....++++.+.+.+.+.++... . .+-|.++ ..+ .-|+++|++||||||+.+.|++.+
T Consensus 885 ~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~----~~r--~gvmlvGptgsGKTt~~~~La~al 947 (2695)
T 4akg_A 885 LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQ----KTQ--QALILVGKAGCGKTATWKTVIDAM 947 (2695)
T ss_dssp SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH----HHC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHH----Hhc--ceEEEECCCCCCHHHHHHHHHHHH
Confidence 4556788888888777666432 1 2222221 112 248999999999999999999875
No 466
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.28 E-value=0.22 Score=47.44 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
.+..|+++|.+|+||||+...|..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999874
No 467
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.21 E-value=0.15 Score=54.42 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
--++.|.|++||||||+.+.|+-.+
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 468
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.18 E-value=0.19 Score=45.06 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|.||+|||||..++...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998753
No 469
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.11 E-value=0.16 Score=51.63 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+--+++|+|.||+||||++..+|...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44599999999999999999998764
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.02 E-value=0.15 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+--+++|.|+|||||||++..++..+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998654
No 471
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.02 E-value=0.19 Score=45.81 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 010885 162 VILVCGTACVGKSTIATQLAQRL---NLPNV 189 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L---gl~~V 189 (498)
.|.|.|-.|+||||+|..||..| |.+.+
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~Vl 32 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIY 32 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 35569999999999999999887 65543
No 472
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.02 E-value=0.24 Score=55.37 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
..+.+|.|+|+.|+||||||..++.+
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 35679999999999999999988765
No 473
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.88 E-value=0.18 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.+.++.|.|++|+||||+.+.|+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998643
No 474
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.77 E-value=0.24 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|.+|+|||||...|...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999998753
No 475
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.77 E-value=0.11 Score=46.66 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|.+|+||||+...|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457899999999999999998654
No 476
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.77 E-value=0.15 Score=53.43 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCeE--EEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLV--ILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~i--IlI~G~pGSGKSTlA~~LA~~ 183 (498)
..-+ +.|+|++|+|||||...|+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3446 999999999999999999754
No 477
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.75 E-value=0.083 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 010885 158 RVPLVILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA 181 (498)
..+..|+|.|.+|+||||+...|.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCT
T ss_pred cCccEEEEECCCCCCHHHHHHHHh
Confidence 345789999999999999998876
No 478
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.73 E-value=0.17 Score=52.80 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+.-+++|+|.||+||||+|..+|...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44699999999999999999998765
No 479
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.71 E-value=0.36 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|+|.||+||||+...|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCC
Confidence 447999999999999999999743
No 480
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=89.62 E-value=0.4 Score=50.41 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
.+..|+|+|.||+||||+...|...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999865
No 481
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.60 E-value=0.17 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
...|++.|.||+||||+...|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999964
No 482
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.52 E-value=0.19 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
..-|+|.|++|+|||||...|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999863
No 483
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.50 E-value=0.17 Score=54.10 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.-++.|.|++||||||+.+.|+..+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998655
No 484
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.49 E-value=0.19 Score=51.49 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 010885 162 VILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+++|.|+||+||||++..++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998886544
No 485
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.38 E-value=0.25 Score=44.96 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 010885 160 PLVILVCGTACVGKSTIATQLAQR 183 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~ 183 (498)
...|+|.|.+|+|||||...|...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999753
No 486
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.37 E-value=0.23 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+..|.+.|.||+||||+...|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999975
No 487
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.33 E-value=0.17 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
...|.|.|+||+|||||...|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 44799999999999999999964
No 488
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.23 E-value=0.2 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-++.|.|++||||||+.+.|+.-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998755
No 489
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.20 E-value=0.33 Score=51.64 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE-Ecchh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPNV-LQTDM 194 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V-i~tD~ 194 (498)
+.++++++.|.+|+||||+|..||..+ |.+.+ +.+|.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 456789999999999999999998876 76653 45664
No 490
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.12 E-value=0.09 Score=46.30 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=5.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 010885 160 PLVILVCGTACVGKSTIATQLAQ 182 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~ 182 (498)
+..|+|.|.+|+||||+...|..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEC----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998864
No 491
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.08 E-value=0.24 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 160 PLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 160 P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
+-+.+|+|++|+||||+-..++-.+
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999887554
No 492
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.04 E-value=0.21 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-++.|.|++||||||+.+.|+..+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999998654
No 493
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.04 E-value=0.18 Score=54.01 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 010885 162 VILVCGTACVGKSTIATQLA 181 (498)
Q Consensus 162 iIlI~G~pGSGKSTlA~~LA 181 (498)
++.|.|++||||||+.+.|+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
No 494
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.92 E-value=0.19 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 161 LVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
-++.|.|++||||||+.+.|+..+
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 479999999999999999998655
No 495
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.91 E-value=0.57 Score=43.51 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=17.0
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 010885 161 LVILVCGTACVGKSTIATQL 180 (498)
Q Consensus 161 ~iIlI~G~pGSGKSTlA~~L 180 (498)
..+++.|++||||||+...+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 48999999999999977654
No 496
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.90 E-value=0.38 Score=47.76 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE-Ecchh
Q 010885 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPNV-LQTDM 194 (498)
Q Consensus 158 r~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~V-i~tD~ 194 (498)
+...++++.|-.|+||||+|..||..+ |.+.+ +.+|.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 345688999999999999999999876 66654 34554
No 497
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.89 E-value=0.68 Score=45.37 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=25.6
Q ss_pred CCCeEEEEEcC-CCCcHHHHHHHHHHhc---CCCeEE
Q 010885 158 RVPLVILVCGT-ACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 158 r~P~iIlI~G~-pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
..+.+|+|+|+ +|+||||+|..||..+ |.+.++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL 138 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 138 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence 34678888876 8999999999998876 666543
No 498
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=88.86 E-value=0.26 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L 184 (498)
.|-+.+|+|++|+||||+..++.-.+
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999886544
No 499
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.82 E-value=0.27 Score=50.17 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRLNL 186 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~Lgl 186 (498)
.+.+.+|.|++|+||||+...++--++.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3568999999999999999999876654
No 500
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.80 E-value=0.45 Score=45.66 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 010885 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (498)
Q Consensus 159 ~P~iIlI~G~pGSGKSTlA~~LA~~L---gl~~Vi 190 (498)
.-.+.+++|+.|+||||.+-.++.++ |.+.++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli 61 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV 61 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 34799999999999999999999887 666544
Done!