Query 010886
Match_columns 498
No_of_seqs 321 out of 3333
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.5E-37 3.3E-42 322.6 21.8 290 137-492 26-324 (493)
2 KOG4277 Uncharacterized conser 100.0 1.7E-29 3.7E-34 241.5 16.8 258 151-467 41-311 (468)
3 TIGR01130 ER_PDI_fam protein d 100.0 6E-28 1.3E-32 257.0 21.5 289 138-490 3-302 (462)
4 PTZ00102 disulphide isomerase; 99.9 7.8E-27 1.7E-31 250.1 22.4 275 138-490 34-312 (477)
5 KOG0713 Molecular chaperone (D 99.9 1.7E-25 3.7E-30 219.6 5.3 144 36-192 15-164 (336)
6 KOG0912 Thiol-disulfide isomer 99.9 3.6E-23 7.9E-28 199.0 17.2 214 141-378 1-222 (375)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.7E-23 3.7E-28 180.4 8.4 107 126-249 3-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 5.7E-22 1.2E-26 167.6 7.5 99 138-249 3-101 (101)
9 COG0484 DnaJ DnaJ-class molecu 99.9 3.3E-22 7.2E-27 201.7 6.9 71 35-105 2-75 (371)
10 cd03007 PDI_a_ERp29_N PDIa fam 99.9 3.8E-22 8.3E-27 171.5 6.0 103 138-252 3-115 (116)
11 KOG0191 Thioredoxin/protein di 99.9 8.6E-21 1.9E-25 198.0 17.2 210 139-366 32-254 (383)
12 cd02996 PDI_a_ERp44 PDIa famil 99.8 6E-21 1.3E-25 163.4 7.0 101 137-249 2-108 (108)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.1E-20 2.5E-25 160.3 6.8 100 138-249 3-104 (104)
14 PF00085 Thioredoxin: Thioredo 99.8 4.8E-20 1E-24 155.2 6.9 102 138-252 1-103 (103)
15 KOG0712 Molecular chaperone (D 99.8 3E-20 6.5E-25 185.1 5.3 72 36-107 3-74 (337)
16 cd02994 PDI_a_TMX PDIa family, 99.8 1.2E-19 2.6E-24 153.1 7.3 98 137-250 2-100 (101)
17 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.9E-19 6.2E-24 152.7 7.9 105 138-249 2-108 (109)
18 cd03065 PDI_b_Calsequestrin_N 99.8 5.1E-19 1.1E-23 153.8 9.4 101 138-252 11-118 (120)
19 cd02993 PDI_a_APS_reductase PD 99.8 3.5E-19 7.6E-24 152.9 6.6 101 138-249 3-109 (109)
20 cd03001 PDI_a_P5 PDIa family, 99.8 1.3E-18 2.7E-23 146.9 7.7 100 138-249 2-102 (103)
21 PF01216 Calsequestrin: Calseq 99.8 1.8E-16 3.9E-21 156.1 23.0 290 125-474 27-327 (383)
22 KOG0190 Protein disulfide isom 99.7 1.2E-18 2.6E-23 181.8 7.5 102 138-252 368-472 (493)
23 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.4E-18 3E-23 146.4 6.4 98 138-249 2-102 (102)
24 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 3.7E-18 8.1E-23 144.1 7.8 100 138-249 2-104 (104)
25 cd02963 TRX_DnaJ TRX domain, D 99.7 2.1E-18 4.6E-23 148.6 6.3 100 139-251 7-110 (111)
26 PTZ00443 Thioredoxin domain-co 99.7 2E-18 4.4E-23 165.8 6.2 104 136-252 30-138 (224)
27 KOG0910 Thioredoxin-like prote 99.7 6.8E-18 1.5E-22 149.1 7.0 102 138-252 45-147 (150)
28 PRK14288 chaperone protein Dna 99.7 4.1E-18 9E-23 176.2 5.5 69 36-104 2-73 (369)
29 PRK14296 chaperone protein Dna 99.7 6.6E-18 1.4E-22 174.8 6.0 69 36-104 3-73 (372)
30 cd02999 PDI_a_ERp44_like PDIa 99.7 2.5E-17 5.3E-22 139.2 7.5 84 151-249 16-100 (100)
31 cd02997 PDI_a_PDIR PDIa family 99.7 2.2E-17 4.7E-22 139.5 7.1 101 138-249 2-104 (104)
32 cd02956 ybbN ybbN protein fami 99.7 3.2E-17 6.9E-22 136.9 7.4 93 144-249 1-95 (96)
33 TIGR01126 pdi_dom protein disu 99.7 4E-17 8.7E-22 137.1 7.6 99 141-252 1-101 (102)
34 KOG1731 FAD-dependent sulfhydr 99.7 7.3E-17 1.6E-21 167.9 10.8 228 127-373 34-285 (606)
35 cd02998 PDI_a_ERp38 PDIa famil 99.7 6.3E-17 1.4E-21 136.7 8.2 100 138-249 2-105 (105)
36 TIGR00424 APS_reduc 5'-adenyly 99.7 4.8E-17 1E-21 171.0 7.6 105 137-251 352-461 (463)
37 KOG0721 Molecular chaperone (D 99.7 6.5E-17 1.4E-21 149.5 7.5 91 13-103 69-168 (230)
38 cd02992 PDI_a_QSOX PDIa family 99.7 1E-16 2.2E-21 138.8 8.1 102 138-246 3-109 (114)
39 COG3118 Thioredoxin domain-con 99.7 5.7E-17 1.2E-21 157.7 7.0 102 138-252 25-129 (304)
40 PTZ00037 DnaJ_C chaperone prot 99.7 3.2E-17 6.9E-22 171.5 5.4 68 36-104 27-94 (421)
41 PRK14286 chaperone protein Dna 99.7 3.8E-17 8.2E-22 169.3 5.6 70 36-105 3-75 (372)
42 cd03000 PDI_a_TMX3 PDIa family 99.7 1.9E-16 4.2E-21 134.5 8.7 94 144-252 7-103 (104)
43 PRK14279 chaperone protein Dna 99.7 4E-17 8.6E-22 170.1 5.2 67 36-102 8-77 (392)
44 PRK09381 trxA thioredoxin; Pro 99.7 1.7E-16 3.7E-21 135.8 8.1 102 138-252 5-107 (109)
45 PRK14287 chaperone protein Dna 99.7 6.2E-17 1.3E-21 167.6 6.0 69 36-104 3-73 (371)
46 PLN02309 5'-adenylylsulfate re 99.7 1.3E-16 2.8E-21 167.7 7.6 104 137-252 346-456 (457)
47 PHA02278 thioredoxin-like prot 99.7 1.1E-16 2.4E-21 135.8 5.5 96 143-248 4-100 (103)
48 TIGR02187 GlrX_arch Glutaredox 99.6 5.4E-15 1.2E-19 142.3 17.8 188 153-362 19-214 (215)
49 PRK14276 chaperone protein Dna 99.6 1E-16 2.2E-21 166.6 6.1 70 36-105 3-74 (380)
50 cd02961 PDI_a_family Protein D 99.6 1.7E-16 3.6E-21 132.1 5.6 98 140-249 2-101 (101)
51 PRK14298 chaperone protein Dna 99.6 1.2E-16 2.7E-21 165.7 5.8 69 36-104 4-74 (377)
52 PRK14283 chaperone protein Dna 99.6 1.3E-16 2.8E-21 165.8 5.8 69 36-104 4-74 (378)
53 PRK14282 chaperone protein Dna 99.6 1.6E-16 3.5E-21 164.6 6.2 69 36-104 3-75 (369)
54 PRK14285 chaperone protein Dna 99.6 1.5E-16 3.3E-21 164.4 5.6 69 36-104 2-73 (365)
55 PRK14280 chaperone protein Dna 99.6 1.9E-16 4.1E-21 164.4 6.0 70 36-105 3-74 (376)
56 PRK14278 chaperone protein Dna 99.6 2.5E-16 5.4E-21 163.5 6.5 66 37-102 3-70 (378)
57 PRK10996 thioredoxin 2; Provis 99.6 3.9E-16 8.5E-21 139.9 6.9 102 138-252 37-138 (139)
58 PRK14299 chaperone protein Dna 99.6 2.2E-16 4.7E-21 158.5 5.8 69 36-104 3-73 (291)
59 PRK14291 chaperone protein Dna 99.6 2.4E-16 5.2E-21 164.0 6.0 69 36-104 2-72 (382)
60 PRK14277 chaperone protein Dna 99.6 2.3E-16 5E-21 164.3 5.7 69 36-104 4-75 (386)
61 PRK14297 chaperone protein Dna 99.6 2.8E-16 6E-21 163.5 6.2 69 36-104 3-74 (380)
62 PRK14294 chaperone protein Dna 99.6 2.7E-16 5.8E-21 162.8 5.7 69 36-104 3-74 (366)
63 PRK14301 chaperone protein Dna 99.6 2.9E-16 6.4E-21 162.7 6.0 69 36-104 3-74 (373)
64 KOG0716 Molecular chaperone (D 99.6 2.6E-16 5.7E-21 150.3 4.6 70 36-105 30-102 (279)
65 cd02985 TRX_CDSP32 TRX family, 99.6 5.8E-16 1.3E-20 131.5 5.8 97 143-251 3-101 (103)
66 PRK14284 chaperone protein Dna 99.6 3.8E-16 8.3E-21 162.9 5.6 68 37-104 1-71 (391)
67 cd02962 TMX2 TMX2 family; comp 99.6 6.1E-16 1.3E-20 140.2 5.6 89 137-228 29-120 (152)
68 PRK14281 chaperone protein Dna 99.6 6.3E-16 1.4E-20 161.5 5.8 70 36-105 2-74 (397)
69 PRK14295 chaperone protein Dna 99.6 5.9E-16 1.3E-20 161.2 5.6 69 36-104 8-83 (389)
70 KOG0717 Molecular chaperone (D 99.6 1.3E-16 2.8E-21 161.7 0.3 68 36-103 7-78 (508)
71 PRK10767 chaperone protein Dna 99.6 8.3E-16 1.8E-20 159.6 6.0 69 36-104 3-74 (371)
72 PF00226 DnaJ: DnaJ domain; I 99.6 7.3E-16 1.6E-20 119.2 4.1 60 38-97 1-64 (64)
73 cd02954 DIM1 Dim1 family; Dim1 99.6 6E-16 1.3E-20 132.8 3.2 76 144-228 3-80 (114)
74 cd02948 TRX_NDPK TRX domain, T 99.6 1.9E-15 4.1E-20 128.1 5.6 96 141-251 5-101 (102)
75 cd02965 HyaE HyaE family; HyaE 99.6 3.9E-15 8.5E-20 126.9 7.4 95 139-246 13-109 (111)
76 PRK14290 chaperone protein Dna 99.6 1.9E-15 4.1E-20 156.4 6.3 68 37-104 3-74 (365)
77 PRK14300 chaperone protein Dna 99.6 1.6E-15 3.5E-20 157.2 5.6 68 37-104 3-72 (372)
78 KOG0715 Molecular chaperone (D 99.6 1.9E-15 4E-20 150.7 5.2 68 36-103 42-111 (288)
79 TIGR02349 DnaJ_bact chaperone 99.6 2.4E-15 5.2E-20 155.3 5.9 68 38-105 1-70 (354)
80 TIGR01068 thioredoxin thioredo 99.6 6.1E-15 1.3E-19 123.3 6.9 98 142-252 2-100 (101)
81 PRK14293 chaperone protein Dna 99.6 3.3E-15 7.1E-20 155.2 6.0 69 36-104 2-72 (374)
82 PTZ00341 Ring-infected erythro 99.6 3E-15 6.5E-20 164.1 5.9 70 36-105 572-643 (1136)
83 PRK14289 chaperone protein Dna 99.6 2.8E-15 6.2E-20 156.3 5.3 69 36-104 4-75 (386)
84 PRK14292 chaperone protein Dna 99.5 3.2E-15 7E-20 155.2 5.7 67 37-103 2-70 (371)
85 PTZ00102 disulphide isomerase; 99.5 8E-15 1.7E-19 157.3 8.5 105 137-253 358-465 (477)
86 KOG0691 Molecular chaperone (D 99.5 3E-15 6.6E-20 148.0 4.5 69 36-104 4-75 (296)
87 KOG0719 Molecular chaperone (D 99.5 4.7E-15 1E-19 138.3 4.8 68 36-103 13-85 (264)
88 KOG0191 Thioredoxin/protein di 99.5 1.4E-14 2.9E-19 151.4 8.8 105 137-253 145-252 (383)
89 cd02957 Phd_like Phosducin (Ph 99.5 5.6E-15 1.2E-19 127.6 4.7 81 137-228 5-88 (113)
90 cd02953 DsbDgamma DsbD gamma f 99.5 1.2E-14 2.7E-19 123.2 6.8 96 144-249 2-103 (104)
91 PRK10266 curved DNA-binding pr 99.5 5.8E-15 1.3E-19 149.3 5.1 66 37-102 4-71 (306)
92 KOG0718 Molecular chaperone (D 99.5 4.9E-15 1.1E-19 150.2 4.1 70 36-105 8-83 (546)
93 KOG0624 dsRNA-activated protei 99.5 1.7E-14 3.7E-19 141.9 6.9 67 33-99 390-462 (504)
94 cd02989 Phd_like_TxnDC9 Phosdu 99.5 3.8E-14 8.3E-19 122.4 7.3 81 138-228 6-87 (113)
95 PF13848 Thioredoxin_6: Thiore 99.5 5.5E-13 1.2E-17 124.2 14.3 152 293-493 9-164 (184)
96 KOG0722 Molecular chaperone (D 99.5 3.9E-14 8.4E-19 133.5 6.1 66 34-99 30-97 (329)
97 cd02950 TxlA TRX-like protein 99.5 1E-13 2.2E-18 124.7 8.5 102 143-255 10-112 (142)
98 cd02984 TRX_PICOT TRX domain, 99.5 4.5E-14 9.7E-19 117.9 4.9 93 143-249 2-96 (97)
99 smart00271 DnaJ DnaJ molecular 99.5 8.2E-14 1.8E-18 106.2 5.6 55 37-91 1-59 (60)
100 PHA03102 Small T antigen; Revi 99.5 6E-14 1.3E-18 126.0 5.4 68 37-105 5-74 (153)
101 cd06257 DnaJ DnaJ domain or J- 99.5 1.1E-13 2.3E-18 103.5 5.6 52 38-89 1-55 (55)
102 TIGR01130 ER_PDI_fam protein d 99.4 1.1E-13 2.4E-18 147.4 8.0 103 137-252 347-453 (462)
103 KOG0907 Thioredoxin [Posttrans 99.4 2.6E-13 5.5E-18 115.5 8.2 85 151-250 19-103 (106)
104 PTZ00051 thioredoxin; Provisio 99.4 1.3E-13 2.9E-18 115.3 6.4 93 139-246 3-96 (98)
105 cd02947 TRX_family TRX family; 99.4 3.3E-13 7.1E-18 109.9 7.7 92 144-249 1-92 (93)
106 PLN00410 U5 snRNP protein, DIM 99.4 1.4E-13 3.1E-18 122.6 5.8 98 143-252 11-119 (142)
107 cd02949 TRX_NTR TRX domain, no 99.4 3.5E-13 7.5E-18 113.0 7.5 86 151-249 11-96 (97)
108 TIGR03835 termin_org_DnaJ term 99.4 2.5E-13 5.4E-18 146.2 5.9 68 37-104 2-71 (871)
109 cd02975 PfPDO_like_N Pyrococcu 99.4 1.3E-12 2.8E-17 112.9 7.0 95 146-252 15-109 (113)
110 cd02986 DLP Dim1 family, Dim1- 99.3 1E-12 2.2E-17 112.1 4.2 76 145-229 4-81 (114)
111 cd02982 PDI_b'_family Protein 99.3 2.5E-12 5.4E-17 108.5 6.6 87 152-252 11-102 (103)
112 cd02987 Phd_like_Phd Phosducin 99.3 2E-12 4.3E-17 120.3 6.1 80 138-228 64-147 (175)
113 COG2214 CbpA DnaJ-class molecu 99.3 2.3E-12 4.9E-17 123.2 5.5 65 36-100 5-73 (237)
114 TIGR00411 redox_disulf_1 small 99.3 1.4E-11 3.1E-16 99.4 8.3 80 156-252 2-81 (82)
115 TIGR01295 PedC_BrcD bacterioci 99.3 6.3E-12 1.4E-16 110.1 6.3 104 138-249 8-120 (122)
116 KOG0908 Thioredoxin-like prote 99.3 7.7E-12 1.7E-16 118.3 7.0 102 138-254 3-107 (288)
117 cd02951 SoxW SoxW family; SoxW 99.2 1.3E-11 2.9E-16 108.2 6.1 97 147-252 7-118 (125)
118 cd02988 Phd_like_VIAF Phosduci 99.2 1.3E-11 2.7E-16 116.5 6.1 78 138-228 84-164 (192)
119 COG5407 SEC63 Preprotein trans 99.2 1.3E-11 2.9E-16 124.8 6.0 69 36-104 97-173 (610)
120 PRK01356 hscB co-chaperone Hsc 99.2 1.5E-11 3.2E-16 113.1 5.6 62 37-98 2-71 (166)
121 PRK05014 hscB co-chaperone Hsc 99.2 2.7E-11 5.9E-16 112.0 5.8 62 37-98 1-72 (171)
122 PRK03578 hscB co-chaperone Hsc 99.1 6.3E-11 1.4E-15 109.9 6.2 68 34-101 3-82 (176)
123 PRK00294 hscB co-chaperone Hsc 99.1 6.9E-11 1.5E-15 109.2 6.2 64 35-98 2-75 (173)
124 cd02952 TRP14_like Human TRX-r 99.1 4E-11 8.7E-16 104.1 4.3 80 143-228 9-102 (119)
125 PTZ00062 glutaredoxin; Provisi 99.1 6.8E-10 1.5E-14 105.3 11.7 162 143-336 6-174 (204)
126 PTZ00100 DnaJ chaperone protei 99.1 8E-11 1.7E-15 100.5 4.7 52 36-88 64-115 (116)
127 KOG0720 Molecular chaperone (D 99.1 6.5E-11 1.4E-15 120.7 4.9 67 36-102 234-302 (490)
128 KOG0714 Molecular chaperone (D 99.1 6.7E-11 1.5E-15 118.2 4.6 69 36-104 2-74 (306)
129 PF13848 Thioredoxin_6: Thiore 99.1 7.3E-09 1.6E-13 96.4 16.9 169 171-362 8-184 (184)
130 KOG0913 Thiol-disulfide isomer 99.0 1.6E-10 3.4E-15 108.8 3.3 101 136-252 24-125 (248)
131 KOG0550 Molecular chaperone (D 99.0 1.9E-10 4.1E-15 116.2 3.5 69 31-99 367-439 (486)
132 PHA02624 large T antigen; Prov 99.0 4.3E-10 9.3E-15 120.4 5.0 60 36-96 10-71 (647)
133 PHA02125 thioredoxin-like prot 99.0 8.5E-10 1.8E-14 88.0 5.5 69 157-247 2-71 (75)
134 TIGR02187 GlrX_arch Glutaredox 99.0 2E-09 4.3E-14 103.6 8.7 82 153-251 133-214 (215)
135 TIGR00412 redox_disulf_2 small 98.9 1.1E-09 2.3E-14 87.8 5.4 72 158-249 3-75 (76)
136 PRK00293 dipZ thiol:disulfide 98.9 1.3E-09 2.8E-14 119.3 7.2 101 143-252 460-569 (571)
137 cd02959 ERp19 Endoplasmic reti 98.9 6.5E-10 1.4E-14 96.6 3.7 90 151-249 17-109 (117)
138 PRK09430 djlA Dna-J like membr 98.9 8.8E-10 1.9E-14 109.2 4.4 55 36-90 199-263 (267)
139 PF13098 Thioredoxin_2: Thiore 98.8 3.6E-09 7.7E-14 90.6 3.8 89 151-249 3-112 (112)
140 PRK03147 thiol-disulfide oxido 98.8 2.5E-08 5.4E-13 92.1 8.6 92 152-252 60-171 (173)
141 KOG1150 Predicted molecular ch 98.7 1.3E-08 2.8E-13 93.3 4.6 63 35-97 51-117 (250)
142 TIGR02740 TraF-like TraF-like 98.7 4.2E-08 9.1E-13 97.6 8.5 90 152-252 165-263 (271)
143 cd02973 TRX_GRX_like Thioredox 98.7 3.3E-08 7.2E-13 76.6 5.8 56 157-222 3-58 (67)
144 cd03011 TlpA_like_ScsD_MtbDsbE 98.6 7.9E-08 1.7E-12 83.6 7.6 93 141-247 8-120 (123)
145 cd02983 P5_C P5 family, C-term 98.6 6.7E-08 1.5E-12 85.5 6.7 83 366-490 2-91 (130)
146 cd02967 mauD Methylamine utili 98.6 8.4E-08 1.8E-12 82.2 7.0 63 152-220 20-82 (114)
147 cd02955 SSP411 TRX domain, SSP 98.6 4E-08 8.6E-13 86.2 4.8 81 145-228 7-92 (124)
148 PRK01773 hscB co-chaperone Hsc 98.6 5.9E-08 1.3E-12 89.7 5.8 62 37-98 2-73 (173)
149 TIGR02738 TrbB type-F conjugat 98.6 1.9E-07 4.1E-12 84.9 8.0 95 149-251 46-151 (153)
150 KOG0914 Thioredoxin-like prote 98.6 5E-08 1.1E-12 90.9 4.2 85 142-229 131-218 (265)
151 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 2.4E-07 5.2E-12 76.4 7.3 76 153-246 12-87 (89)
152 cd03009 TryX_like_TryX_NRX Try 98.5 1.8E-07 3.9E-12 82.5 7.1 69 152-226 17-109 (131)
153 PRK11509 hydrogenase-1 operon 98.5 3.7E-07 8E-12 80.4 8.5 100 140-252 21-123 (132)
154 PRK14018 trifunctional thiored 98.5 2.7E-07 5.8E-12 99.0 9.0 91 151-251 54-171 (521)
155 cd02964 TryX_like_family Trypa 98.5 2.5E-07 5.5E-12 81.9 6.9 69 152-226 16-109 (132)
156 cd03010 TlpA_like_DsbE TlpA-li 98.5 1.6E-07 3.5E-12 82.2 5.3 82 152-245 24-126 (127)
157 cd02966 TlpA_like_family TlpA- 98.5 2.9E-07 6.2E-12 77.6 6.4 68 153-226 19-107 (116)
158 TIGR00714 hscB Fe-S protein as 98.5 1.7E-07 3.7E-12 85.5 5.3 50 49-98 3-60 (157)
159 cd03007 PDI_a_ERp29_N PDIa fam 98.5 1.5E-06 3.3E-11 75.0 10.3 98 262-363 6-115 (116)
160 TIGR00385 dsbE periplasmic pro 98.4 8.5E-07 1.8E-11 82.4 7.6 95 151-252 61-170 (173)
161 COG5269 ZUO1 Ribosome-associat 98.4 3.3E-07 7.1E-12 87.8 4.1 67 36-102 42-116 (379)
162 cd02958 UAS UAS family; UAS is 98.3 1.3E-06 2.9E-11 75.2 7.1 92 151-252 15-110 (114)
163 PRK15412 thiol:disulfide inter 98.3 1.8E-06 3.9E-11 81.1 7.7 95 151-252 66-175 (185)
164 cd03008 TryX_like_RdCVF Trypar 98.2 1.8E-06 4E-11 77.8 6.2 76 152-227 24-123 (146)
165 PF13905 Thioredoxin_8: Thiore 98.2 2.3E-06 5.1E-11 70.8 5.5 74 153-226 1-92 (95)
166 PRK13728 conjugal transfer pro 98.2 4.3E-06 9.2E-11 77.8 7.5 85 157-252 73-170 (181)
167 KOG0568 Molecular chaperone (D 98.2 2E-06 4.4E-11 80.6 4.8 85 3-90 16-103 (342)
168 PF13899 Thioredoxin_7: Thiore 98.2 1.3E-06 2.7E-11 70.8 2.8 64 151-224 15-81 (82)
169 cd03065 PDI_b_Calsequestrin_N 98.1 2.6E-05 5.5E-10 68.0 10.8 94 262-362 14-117 (120)
170 PLN02919 haloacid dehalogenase 98.1 6.2E-06 1.3E-10 96.5 8.8 91 152-252 419-535 (1057)
171 COG4232 Thiol:disulfide interc 98.1 2.7E-06 5.9E-11 90.8 5.2 98 145-252 464-567 (569)
172 cd02981 PDI_b_family Protein D 98.1 1.7E-05 3.7E-10 65.9 8.8 94 262-363 4-97 (97)
173 cd01659 TRX_superfamily Thiore 98.1 7.7E-06 1.7E-10 60.4 5.9 63 157-226 1-63 (69)
174 PF00085 Thioredoxin: Thioredo 98.1 2.1E-05 4.5E-10 65.5 9.0 96 262-363 4-103 (103)
175 cd03066 PDI_b_Calsequestrin_mi 98.1 2.7E-05 5.9E-10 65.8 9.3 95 262-364 5-101 (102)
176 cd03069 PDI_b_ERp57 PDIb famil 98.0 2.9E-05 6.3E-10 65.9 9.0 93 262-363 5-103 (104)
177 smart00594 UAS UAS domain. 98.0 1.5E-05 3.2E-10 69.7 7.1 92 151-249 25-121 (122)
178 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 2.7E-05 5.9E-10 65.6 8.5 79 280-360 22-104 (104)
179 KOG1789 Endocytosis protein RM 98.0 5.7E-06 1.2E-10 91.7 4.8 53 36-88 1280-1336(2235)
180 KOG4277 Uncharacterized conser 98.0 0.00011 2.3E-09 72.0 12.3 106 268-375 34-143 (468)
181 TIGR02196 GlrX_YruB Glutaredox 97.9 1.9E-05 4.1E-10 61.4 5.9 71 157-249 2-73 (74)
182 cd03012 TlpA_like_DipZ_like Tl 97.9 1.8E-05 4E-10 69.2 6.3 74 152-225 22-114 (126)
183 TIGR02661 MauD methylamine deh 97.9 4.6E-05 9.9E-10 71.9 8.8 91 152-250 73-176 (189)
184 cd03002 PDI_a_MPD1_like PDI fa 97.9 7.4E-05 1.6E-09 63.3 9.1 92 268-361 10-109 (109)
185 COG0526 TrxA Thiol-disulfide i 97.9 3.7E-05 8.1E-10 64.0 6.5 69 153-228 32-101 (127)
186 cd03006 PDI_a_EFP1_N PDIa fami 97.8 6.8E-05 1.5E-09 64.7 8.0 77 280-360 32-113 (113)
187 cd02960 AGR Anterior Gradient 97.8 2.2E-05 4.7E-10 69.2 4.9 98 145-252 11-122 (130)
188 cd02996 PDI_a_ERp44 PDIa famil 97.8 0.00011 2.3E-09 62.5 8.4 92 262-360 6-108 (108)
189 cd02981 PDI_b_family Protein D 97.8 6.3E-05 1.4E-09 62.4 6.8 87 146-251 10-96 (97)
190 cd03003 PDI_a_ERdj5_N PDIa fam 97.8 0.00011 2.4E-09 61.6 8.2 77 280-359 21-100 (101)
191 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00013 2.9E-09 62.6 8.5 106 138-252 6-118 (126)
192 PLN02399 phospholipid hydroper 97.8 0.00015 3.2E-09 70.7 9.9 98 152-252 98-233 (236)
193 PF13192 Thioredoxin_3: Thiore 97.7 5.5E-05 1.2E-09 60.3 5.3 73 158-250 3-76 (76)
194 cd00340 GSH_Peroxidase Glutath 97.7 0.00013 2.8E-09 66.1 7.3 42 152-194 21-63 (152)
195 cd03001 PDI_a_P5 PDIa family, 97.6 0.00034 7.4E-09 58.3 9.1 79 280-360 21-102 (103)
196 PTZ00056 glutathione peroxidas 97.6 0.0003 6.6E-09 66.9 9.6 56 152-207 38-102 (199)
197 PF08534 Redoxin: Redoxin; In 97.6 9.2E-05 2E-09 66.3 5.7 77 152-228 27-126 (146)
198 TIGR01126 pdi_dom protein disu 97.6 0.00053 1.1E-08 56.9 9.8 80 280-363 16-101 (102)
199 cd03068 PDI_b_ERp72 PDIb famil 97.6 0.00042 9.1E-09 59.2 9.2 95 262-363 5-107 (107)
200 TIGR02200 GlrX_actino Glutared 97.6 0.00013 2.8E-09 57.5 5.6 58 157-227 2-61 (77)
201 PLN02412 probable glutathione 97.6 0.00029 6.2E-09 65.1 8.5 43 152-194 28-71 (167)
202 TIGR03143 AhpF_homolog putativ 97.6 0.0018 3.9E-08 71.2 16.2 183 153-360 366-554 (555)
203 cd02993 PDI_a_APS_reductase PD 97.6 0.0003 6.4E-09 60.0 7.7 80 280-360 24-109 (109)
204 cd02999 PDI_a_ERp44_like PDIa 97.5 0.00025 5.4E-09 59.7 6.4 77 280-360 21-100 (100)
205 cd02956 ybbN ybbN protein fami 97.5 0.00079 1.7E-08 55.6 8.8 79 280-361 15-96 (96)
206 TIGR02540 gpx7 putative glutat 97.4 0.0008 1.7E-08 61.0 9.4 42 152-193 21-63 (153)
207 PRK11509 hydrogenase-1 operon 97.4 0.0019 4.2E-08 57.0 11.3 93 268-366 27-126 (132)
208 cd02969 PRX_like1 Peroxiredoxi 97.4 0.00068 1.5E-08 62.6 9.0 96 152-252 24-151 (171)
209 TIGR00424 APS_reduc 5'-adenyly 97.4 0.00053 1.2E-08 72.9 9.2 100 262-362 356-461 (463)
210 cd03005 PDI_a_ERp46 PDIa famil 97.3 0.001 2.2E-08 55.3 8.1 77 280-360 19-102 (102)
211 PF13728 TraF: F plasmid trans 97.3 0.00057 1.2E-08 65.8 7.3 86 152-247 119-212 (215)
212 cd02995 PDI_a_PDI_a'_C PDIa fa 97.3 0.0011 2.4E-08 55.2 8.1 78 280-360 21-104 (104)
213 cd03067 PDI_b_PDIR_N PDIb fami 97.3 0.00028 6E-09 58.4 4.1 97 143-251 9-110 (112)
214 cd02998 PDI_a_ERp38 PDIa famil 97.3 0.0012 2.6E-08 55.0 8.3 67 292-360 36-105 (105)
215 cd02963 TRX_DnaJ TRX domain, D 97.3 0.0016 3.4E-08 55.8 8.9 80 280-362 27-110 (111)
216 cd02961 PDI_a_family Protein D 97.2 0.0015 3.3E-08 53.4 7.9 80 279-360 17-101 (101)
217 cd02994 PDI_a_TMX PDIa family, 97.2 0.0019 4.1E-08 53.8 8.5 79 280-362 19-101 (101)
218 cd02997 PDI_a_PDIR PDIa family 97.2 0.0021 4.7E-08 53.5 8.8 90 268-360 10-104 (104)
219 TIGR02180 GRX_euk Glutaredoxin 97.1 0.00036 7.8E-09 56.0 3.2 61 157-227 1-63 (84)
220 cd02965 HyaE HyaE family; HyaE 97.1 0.0031 6.6E-08 54.1 9.0 84 268-357 20-109 (111)
221 PF00578 AhpC-TSA: AhpC/TSA fa 97.1 0.00057 1.2E-08 59.0 4.6 77 152-228 24-120 (124)
222 KOG0910 Thioredoxin-like prote 97.1 0.0018 4E-08 57.9 7.8 82 279-363 63-147 (150)
223 PLN02309 5'-adenylylsulfate re 97.1 0.0016 3.6E-08 69.2 8.9 99 262-362 350-455 (457)
224 PF02114 Phosducin: Phosducin; 97.1 0.00053 1.1E-08 68.0 4.6 103 138-252 127-237 (265)
225 KOG2501 Thioredoxin, nucleored 97.1 0.0014 3E-08 59.2 6.7 70 152-227 32-126 (157)
226 cd03072 PDI_b'_ERp44 PDIb' fam 97.1 0.0015 3.3E-08 56.1 6.5 101 138-252 1-107 (111)
227 cd03017 PRX_BCP Peroxiredoxin 97.0 0.0017 3.7E-08 57.4 6.8 55 153-207 23-79 (140)
228 KOG0912 Thiol-disulfide isomer 97.0 0.0018 3.9E-08 63.9 7.3 135 280-429 16-158 (375)
229 COG3118 Thioredoxin domain-con 97.0 0.002 4.4E-08 63.7 7.7 97 262-363 28-129 (304)
230 cd02982 PDI_b'_family Protein 97.0 0.0021 4.5E-08 53.6 6.8 68 293-362 31-101 (103)
231 KOG0723 Molecular chaperone (D 97.0 0.0013 2.7E-08 54.9 5.1 49 41-90 60-108 (112)
232 cd02991 UAS_ETEA UAS family, E 96.9 0.0011 2.4E-08 57.4 4.7 92 151-252 15-112 (116)
233 TIGR01068 thioredoxin thioredo 96.9 0.011 2.4E-07 48.5 10.4 81 280-363 17-100 (101)
234 cd03000 PDI_a_TMX3 PDIa family 96.9 0.0059 1.3E-07 51.3 8.8 79 279-362 17-102 (104)
235 TIGR02739 TraF type-F conjugat 96.9 0.0027 5.8E-08 62.5 7.5 90 153-252 150-247 (256)
236 cd02953 DsbDgamma DsbD gamma f 96.9 0.0036 7.8E-08 52.6 7.4 63 299-361 39-104 (104)
237 PRK09381 trxA thioredoxin; Pro 96.9 0.007 1.5E-07 51.2 8.9 81 280-363 24-107 (109)
238 cd03015 PRX_Typ2cys Peroxiredo 96.8 0.007 1.5E-07 56.0 9.2 97 153-252 29-156 (173)
239 cd02983 P5_C P5 family, C-term 96.8 0.0059 1.3E-07 54.0 8.2 87 278-366 20-117 (130)
240 PF07912 ERp29_N: ERp29, N-ter 96.8 0.011 2.4E-07 51.0 9.4 94 268-365 14-120 (126)
241 cd02950 TxlA TRX-like protein 96.8 0.0089 1.9E-07 53.6 9.4 86 278-363 20-109 (142)
242 PRK10996 thioredoxin 2; Provis 96.8 0.0083 1.8E-07 53.6 9.1 68 293-363 71-138 (139)
243 PTZ00443 Thioredoxin domain-co 96.8 0.0055 1.2E-07 59.3 8.5 82 279-364 54-139 (224)
244 KOG2603 Oligosaccharyltransfer 96.7 0.0078 1.7E-07 59.8 9.2 107 137-252 41-165 (331)
245 cd02985 TRX_CDSP32 TRX family, 96.7 0.015 3.3E-07 48.9 9.5 91 268-362 6-101 (103)
246 TIGR01626 ytfJ_HI0045 conserve 96.6 0.0072 1.6E-07 56.6 7.7 93 152-247 58-174 (184)
247 PHA02278 thioredoxin-like prot 96.6 0.015 3.2E-07 49.3 9.0 79 280-359 17-100 (103)
248 PTZ00256 glutathione peroxidas 96.6 0.0089 1.9E-07 56.0 8.4 42 153-194 40-83 (183)
249 PRK00522 tpx lipid hydroperoxi 96.6 0.0043 9.3E-08 57.2 6.1 54 153-207 44-98 (167)
250 cd03073 PDI_b'_ERp72_ERp57 PDI 96.6 0.0042 9.1E-08 53.4 5.6 61 397-489 17-86 (111)
251 TIGR03137 AhpC peroxiredoxin. 96.6 0.011 2.4E-07 55.6 8.9 91 152-252 30-155 (187)
252 TIGR03143 AhpF_homolog putativ 96.6 0.0056 1.2E-07 67.4 7.8 79 153-249 475-554 (555)
253 PRK09437 bcp thioredoxin-depen 96.5 0.0077 1.7E-07 54.4 7.2 56 152-207 29-86 (154)
254 PRK13703 conjugal pilus assemb 96.5 0.0061 1.3E-07 59.7 6.9 92 153-252 143-240 (248)
255 cd02989 Phd_like_TxnDC9 Phosdu 96.5 0.017 3.7E-07 49.6 8.7 94 262-360 9-112 (113)
256 cd02976 NrdH NrdH-redoxin (Nrd 96.4 0.0052 1.1E-07 47.3 4.8 54 157-222 2-56 (73)
257 PF06110 DUF953: Eukaryotic pr 96.4 0.00067 1.5E-08 58.8 -0.4 76 151-226 17-99 (119)
258 cd03073 PDI_b'_ERp72_ERp57 PDI 96.4 0.0072 1.6E-07 51.9 6.0 98 140-252 3-110 (111)
259 cd02948 TRX_NDPK TRX domain, T 96.4 0.019 4.2E-07 48.2 8.3 92 263-362 5-101 (102)
260 PRK11200 grxA glutaredoxin 1; 96.4 0.0044 9.5E-08 50.3 4.1 79 157-252 3-82 (85)
261 PRK10606 btuE putative glutath 96.3 0.02 4.3E-07 53.7 9.0 42 152-194 24-66 (183)
262 cd02949 TRX_NTR TRX domain, no 96.3 0.022 4.7E-07 47.3 8.3 81 278-361 13-97 (97)
263 KOG3192 Mitochondrial J-type c 96.3 0.0027 5.9E-08 56.6 2.9 64 35-98 6-79 (168)
264 PRK15317 alkyl hydroperoxide r 96.3 0.01 2.2E-07 64.7 8.0 82 153-252 116-197 (517)
265 KOG0911 Glutaredoxin-related p 96.3 0.017 3.6E-07 55.0 8.3 78 151-242 15-92 (227)
266 cd02970 PRX_like2 Peroxiredoxi 96.3 0.0071 1.5E-07 53.8 5.7 55 153-207 23-79 (149)
267 cd02957 Phd_like Phosducin (Ph 96.3 0.022 4.8E-07 48.7 8.5 59 279-341 25-87 (113)
268 cd03014 PRX_Atyp2cys Peroxired 96.3 0.009 2E-07 53.1 6.0 55 152-207 25-80 (143)
269 KOG0907 Thioredoxin [Posttrans 96.2 0.042 9.2E-07 46.8 9.5 81 278-363 21-105 (106)
270 KOG3425 Uncharacterized conser 96.2 0.0048 1E-07 52.8 3.4 73 151-225 23-104 (128)
271 PRK10382 alkyl hydroperoxide r 96.1 0.031 6.8E-07 52.6 9.0 93 153-252 31-155 (187)
272 cd02954 DIM1 Dim1 family; Dim1 96.1 0.021 4.6E-07 49.2 7.2 62 278-341 14-79 (114)
273 cd02975 PfPDO_like_N Pyrococcu 96.1 0.05 1.1E-06 46.7 9.5 67 293-362 41-108 (113)
274 cd03018 PRX_AhpE_like Peroxire 96.1 0.011 2.4E-07 52.8 5.5 54 154-207 29-84 (149)
275 cd02987 Phd_like_Phd Phosducin 96.0 0.036 7.9E-07 51.6 8.9 80 280-363 85-174 (175)
276 KOG1672 ATP binding protein [P 96.0 0.0066 1.4E-07 56.4 3.7 76 143-228 74-149 (211)
277 cd03020 DsbA_DsbC_DsbG DsbA fa 96.0 0.0073 1.6E-07 57.1 4.2 85 151-249 75-197 (197)
278 cd03072 PDI_b'_ERp44 PDIb' fam 95.9 0.017 3.6E-07 49.6 5.8 62 397-489 19-82 (111)
279 cd02968 SCO SCO (an acronym fo 95.8 0.015 3.3E-07 51.3 5.4 44 152-195 21-69 (142)
280 PF07449 HyaE: Hydrogenase-1 e 95.8 0.0088 1.9E-07 50.8 3.3 81 138-227 11-93 (107)
281 cd02984 TRX_PICOT TRX domain, 95.7 0.063 1.4E-06 44.0 8.4 89 268-360 5-96 (97)
282 cd03419 GRX_GRXh_1_2_like Glut 95.7 0.012 2.7E-07 46.8 3.9 59 157-227 2-62 (82)
283 cd02947 TRX_family TRX family; 95.7 0.068 1.5E-06 42.4 8.4 65 293-361 29-93 (93)
284 TIGR02183 GRXA Glutaredoxin, G 95.6 0.02 4.4E-07 46.6 4.8 79 157-252 2-81 (86)
285 PRK10877 protein disulfide iso 95.6 0.025 5.4E-07 55.1 6.0 88 151-252 105-230 (232)
286 cd02971 PRX_family Peroxiredox 95.5 0.033 7.2E-07 49.0 6.1 55 152-206 21-77 (140)
287 cd02972 DsbA_family DsbA famil 95.4 0.029 6.3E-07 45.3 4.9 37 157-193 1-37 (98)
288 cd02066 GRX_family Glutaredoxi 95.3 0.018 3.8E-07 44.0 3.4 56 157-226 2-58 (72)
289 PLN00410 U5 snRNP protein, DIM 95.2 0.13 2.8E-06 46.1 9.0 96 264-362 10-118 (142)
290 TIGR02190 GlrX-dom Glutaredoxi 95.2 0.032 6.9E-07 44.6 4.6 57 156-226 9-65 (79)
291 COG2143 Thioredoxin-related pr 95.2 0.067 1.5E-06 48.1 6.9 90 148-246 37-142 (182)
292 PTZ00253 tryparedoxin peroxida 95.2 0.15 3.2E-06 48.4 9.9 94 153-252 36-163 (199)
293 PRK15000 peroxidase; Provision 95.2 0.099 2.1E-06 49.7 8.6 100 152-252 33-161 (200)
294 PF01216 Calsequestrin: Calseq 95.1 0.73 1.6E-05 46.8 14.7 106 262-375 39-155 (383)
295 PRK13190 putative peroxiredoxi 95.1 0.13 2.8E-06 49.0 9.1 100 153-252 27-153 (202)
296 cd02951 SoxW SoxW family; SoxW 95.0 0.096 2.1E-06 45.4 7.5 43 320-362 74-117 (125)
297 cd02962 TMX2 TMX2 family; comp 95.0 0.11 2.4E-06 47.2 7.9 72 268-341 38-119 (152)
298 PF00462 Glutaredoxin: Glutare 94.8 0.02 4.4E-07 42.9 2.3 54 157-222 1-55 (60)
299 cd02986 DLP Dim1 family, Dim1- 94.7 0.098 2.1E-06 45.0 6.5 69 277-347 13-85 (114)
300 TIGR03140 AhpF alkyl hydropero 94.7 0.093 2E-06 57.3 8.0 82 153-252 117-198 (515)
301 cd03066 PDI_b_Calsequestrin_mi 94.6 0.14 3.1E-06 43.0 7.2 95 139-252 3-100 (102)
302 cd03069 PDI_b_ERp57 PDIb famil 94.5 0.1 2.3E-06 44.0 6.1 92 144-252 9-103 (104)
303 cd03029 GRX_hybridPRX5 Glutare 94.4 0.083 1.8E-06 41.1 5.0 69 157-249 3-71 (72)
304 KOG3414 Component of the U4/U6 94.4 0.08 1.7E-06 45.8 5.2 73 147-228 15-89 (142)
305 COG1076 DjlA DnaJ-domain-conta 94.2 0.066 1.4E-06 49.8 4.8 51 37-87 113-173 (174)
306 cd02992 PDI_a_QSOX PDIa family 94.2 0.25 5.3E-06 42.4 8.0 62 280-341 22-89 (114)
307 PF14595 Thioredoxin_9: Thiore 94.2 0.027 5.8E-07 49.7 2.0 67 153-226 41-107 (129)
308 PF03190 Thioredox_DsbH: Prote 94.1 0.019 4.1E-07 52.5 0.9 76 144-228 28-114 (163)
309 PTZ00137 2-Cys peroxiredoxin; 94.1 0.18 3.8E-06 50.0 7.8 93 152-252 97-224 (261)
310 cd02988 Phd_like_VIAF Phosduci 94.1 0.27 5.7E-06 46.5 8.6 77 279-362 103-190 (192)
311 KOG2640 Thioredoxin [Function 94.0 0.038 8.3E-07 55.0 2.8 88 151-252 74-161 (319)
312 PTZ00051 thioredoxin; Provisio 93.8 0.44 9.5E-06 39.0 8.6 87 263-357 6-96 (98)
313 TIGR00411 redox_disulf_1 small 93.8 0.39 8.4E-06 37.9 7.9 63 293-362 18-80 (82)
314 TIGR01295 PedC_BrcD bacterioci 93.6 0.45 9.7E-06 41.5 8.5 79 280-361 25-121 (122)
315 cd03023 DsbA_Com1_like DsbA fa 93.5 0.093 2E-06 46.6 4.3 39 152-191 4-42 (154)
316 PRK13599 putative peroxiredoxi 93.4 0.3 6.5E-06 47.0 7.9 97 155-252 31-155 (215)
317 PRK10329 glutaredoxin-like pro 93.4 0.12 2.6E-06 41.6 4.3 74 157-252 3-76 (81)
318 KOG0431 Auxilin-like protein a 93.2 0.18 3.8E-06 54.0 6.4 32 40-71 391-422 (453)
319 cd03067 PDI_b_PDIR_N PDIb fami 93.0 0.43 9.3E-06 39.9 6.9 91 268-362 12-110 (112)
320 cd03016 PRX_1cys Peroxiredoxin 93.0 0.35 7.6E-06 46.0 7.6 41 155-195 28-69 (203)
321 PRK15317 alkyl hydroperoxide r 92.6 4 8.6E-05 44.5 16.1 173 154-362 19-196 (517)
322 PRK13191 putative peroxiredoxi 92.6 0.61 1.3E-05 44.9 8.6 91 155-252 36-160 (215)
323 cd03019 DsbA_DsbA DsbA family, 92.5 0.16 3.5E-06 46.5 4.4 42 152-193 14-55 (178)
324 PRK13189 peroxiredoxin; Provis 92.4 0.51 1.1E-05 45.7 7.8 97 155-252 38-162 (222)
325 cd02952 TRP14_like Human TRX-r 92.3 0.73 1.6E-05 40.1 7.9 49 292-340 46-100 (119)
326 PF02114 Phosducin: Phosducin; 92.0 0.35 7.7E-06 48.0 6.3 68 293-364 165-238 (265)
327 TIGR02194 GlrX_NrdH Glutaredox 92.0 0.2 4.4E-06 39.0 3.8 69 158-247 2-70 (72)
328 TIGR03140 AhpF alkyl hydropero 91.7 6.6 0.00014 42.8 16.4 174 153-362 19-197 (515)
329 COG1076 DjlA DnaJ-domain-conta 91.3 0.1 2.2E-06 48.6 1.5 61 38-98 2-72 (174)
330 cd03027 GRX_DEP Glutaredoxin ( 91.2 0.34 7.4E-06 37.8 4.3 56 157-226 3-59 (73)
331 cd03418 GRX_GRXb_1_3_like Glut 91.1 0.33 7.1E-06 37.8 4.1 56 157-226 2-59 (75)
332 TIGR02181 GRX_bact Glutaredoxi 90.6 0.2 4.2E-06 39.7 2.4 55 158-226 2-57 (79)
333 cd02958 UAS UAS family; UAS is 90.2 3.1 6.6E-05 35.4 9.8 44 319-362 65-109 (114)
334 TIGR02189 GlrX-like_plant Glut 89.2 0.4 8.7E-06 40.1 3.3 62 149-226 4-69 (99)
335 PHA03050 glutaredoxin; Provisi 88.5 0.46 9.9E-06 40.5 3.2 64 150-226 10-77 (108)
336 PF11009 DUF2847: Protein of u 88.4 0.24 5.1E-06 42.0 1.4 90 144-245 8-104 (105)
337 PF07449 HyaE: Hydrogenase-1 e 88.2 1 2.2E-05 38.4 5.1 70 267-341 18-93 (107)
338 COG0695 GrxC Glutaredoxin and 88.1 0.73 1.6E-05 37.0 4.0 54 157-222 3-59 (80)
339 PRK00293 dipZ thiol:disulfide 88.0 2.1 4.6E-05 47.3 9.0 57 306-362 508-568 (571)
340 PRK10638 glutaredoxin 3; Provi 87.7 0.57 1.2E-05 37.5 3.2 56 157-226 4-60 (83)
341 PF13462 Thioredoxin_4: Thiore 87.0 0.59 1.3E-05 41.9 3.3 44 151-194 10-55 (162)
342 TIGR00365 monothiol glutaredox 86.7 0.65 1.4E-05 38.7 3.1 50 163-226 25-75 (97)
343 PRK03147 thiol-disulfide oxido 86.4 4.2 9.2E-05 36.9 8.7 44 320-363 128-171 (173)
344 PF03656 Pam16: Pam16; InterP 86.4 1.2 2.6E-05 39.1 4.7 53 38-91 59-111 (127)
345 PRK10954 periplasmic protein d 86.1 0.73 1.6E-05 43.9 3.5 41 153-193 37-80 (207)
346 PF02966 DIM1: Mitosis protein 85.8 0.9 1.9E-05 39.9 3.5 68 151-227 18-85 (133)
347 PF05768 DUF836: Glutaredoxin- 85.7 0.84 1.8E-05 36.6 3.2 80 157-250 2-81 (81)
348 PRK11657 dsbG disulfide isomer 85.7 2.6 5.5E-05 41.6 7.2 28 151-178 115-142 (251)
349 KOG3170 Conserved phosducin-li 85.7 1.1 2.4E-05 42.1 4.2 102 138-252 93-200 (240)
350 TIGR02740 TraF-like TraF-like 85.1 6.6 0.00014 39.1 9.9 69 292-362 184-262 (271)
351 cd03028 GRX_PICOT_like Glutare 84.5 1.2 2.7E-05 36.4 3.7 50 163-226 21-71 (90)
352 KOG0908 Thioredoxin-like prote 84.1 5.1 0.00011 39.1 8.1 69 290-363 37-105 (288)
353 cd03068 PDI_b_ERp72 PDIb famil 83.8 2.2 4.8E-05 36.2 5.1 92 144-251 9-106 (107)
354 PF13098 Thioredoxin_2: Thiore 82.7 2.1 4.6E-05 35.8 4.6 41 320-360 72-112 (112)
355 smart00594 UAS UAS domain. 82.2 9 0.0002 33.1 8.4 43 318-360 74-121 (122)
356 cd03011 TlpA_like_ScsD_MtbDsbE 79.9 10 0.00023 32.1 8.0 38 320-358 83-120 (123)
357 KOG3171 Conserved phosducin-li 79.7 3.1 6.6E-05 39.6 4.7 80 138-228 140-223 (273)
358 PRK10824 glutaredoxin-4; Provi 78.6 1.5 3.2E-05 37.9 2.2 50 163-226 28-78 (115)
359 PRK12759 bifunctional gluaredo 78.2 2.1 4.5E-05 45.4 3.6 60 157-222 4-66 (410)
360 PF00837 T4_deiodinase: Iodoth 77.3 7.1 0.00015 38.0 6.6 49 137-185 83-134 (237)
361 cd03013 PRX5_like Peroxiredoxi 77.2 8.3 0.00018 34.9 6.9 54 154-207 30-87 (155)
362 KOG1731 FAD-dependent sulfhydr 76.3 5.9 0.00013 43.0 6.3 71 290-360 73-149 (606)
363 PTZ00062 glutaredoxin; Provisi 74.3 12 0.00027 35.6 7.4 71 280-363 19-93 (204)
364 TIGR00412 redox_disulf_2 small 74.2 13 0.00028 29.2 6.4 58 293-360 17-75 (76)
365 KOG0914 Thioredoxin-like prote 73.7 6.6 0.00014 37.6 5.2 68 272-341 139-216 (265)
366 PF11009 DUF2847: Protein of u 72.3 12 0.00026 31.7 6.1 93 262-356 4-104 (105)
367 PRK14018 trifunctional thiored 71.2 20 0.00044 39.1 9.0 42 320-361 129-170 (521)
368 PF11833 DUF3353: Protein of u 71.0 5.6 0.00012 37.6 4.2 43 46-93 1-44 (194)
369 COG4232 Thiol:disulfide interc 64.8 21 0.00046 39.1 7.5 58 306-363 508-567 (569)
370 KOG1752 Glutaredoxin and relat 62.8 11 0.00023 32.0 3.9 65 148-226 9-75 (104)
371 PF13728 TraF: F plasmid trans 62.6 46 0.001 31.9 8.8 76 281-358 124-212 (215)
372 cd03009 TryX_like_TryX_NRX Try 62.2 29 0.00063 29.8 6.8 22 320-341 89-110 (131)
373 cd03026 AhpF_NTD_C TRX-GRX-lik 61.2 57 0.0012 26.5 7.9 54 294-355 32-85 (89)
374 KOG2603 Oligosaccharyltransfer 61.2 61 0.0013 32.8 9.4 99 262-363 45-165 (331)
375 KOG0724 Zuotin and related mol 60.7 7.4 0.00016 39.9 3.1 52 49-100 4-62 (335)
376 cd02991 UAS_ETEA UAS family, E 57.9 1.2E+02 0.0026 26.0 9.7 43 320-362 66-111 (116)
377 cd02959 ERp19 Endoplasmic reti 57.8 13 0.00029 31.8 3.7 34 307-341 52-87 (117)
378 PF14687 DUF4460: Domain of un 57.1 15 0.00033 31.5 3.9 44 47-90 4-54 (112)
379 cd02973 TRX_GRX_like Thioredox 57.0 53 0.0011 24.4 6.6 40 294-336 19-58 (67)
380 PF13192 Thioredoxin_3: Thiore 56.4 91 0.002 24.2 8.1 37 319-361 39-76 (76)
381 PF13446 RPT: A repeated domai 56.0 11 0.00024 28.4 2.7 27 37-63 5-31 (62)
382 cd03070 PDI_b_ERp44 PDIb famil 53.3 79 0.0017 26.1 7.4 67 279-352 18-85 (91)
383 COG2143 Thioredoxin-related pr 52.6 32 0.00069 31.4 5.2 36 320-355 105-140 (182)
384 PF13743 Thioredoxin_5: Thiore 50.6 8.2 0.00018 35.8 1.3 34 159-192 2-35 (176)
385 COG1225 Bcp Peroxiredoxin [Pos 50.4 43 0.00093 30.6 5.9 55 153-207 30-86 (157)
386 KOG3171 Conserved phosducin-li 50.0 49 0.0011 31.7 6.2 81 280-364 162-251 (273)
387 PF13462 Thioredoxin_4: Thiore 47.8 21 0.00046 31.6 3.6 35 202-251 128-162 (162)
388 PF13905 Thioredoxin_8: Thiore 46.9 47 0.001 26.5 5.3 20 472-491 74-93 (95)
389 cd02964 TryX_like_family Trypa 45.6 59 0.0013 28.1 6.0 22 320-341 89-110 (132)
390 cd02955 SSP411 TRX domain, SSP 45.3 1.9E+02 0.0041 25.1 9.0 18 325-342 75-92 (124)
391 KOG1672 ATP binding protein [P 44.6 58 0.0013 30.8 5.8 61 278-341 85-148 (211)
392 cd03010 TlpA_like_DsbE TlpA-li 44.5 1E+02 0.0022 26.1 7.3 37 320-356 90-126 (127)
393 PHA02125 thioredoxin-like prot 44.1 1.3E+02 0.0028 23.1 7.2 17 319-335 35-51 (75)
394 PF13417 GST_N_3: Glutathione 43.9 33 0.00071 26.5 3.7 68 160-252 2-70 (75)
395 cd02966 TlpA_like_family TlpA- 43.6 1.2E+02 0.0025 24.2 7.3 23 472-494 89-111 (116)
396 COG3019 Predicted metal-bindin 42.7 1.1E+02 0.0025 27.3 7.0 77 155-252 26-103 (149)
397 KOG3414 Component of the U4/U6 42.3 1.1E+02 0.0024 26.9 6.7 68 277-347 22-94 (142)
398 TIGR02738 TrbB type-F conjugat 40.8 1.9E+02 0.0041 26.1 8.7 68 293-362 69-151 (153)
399 TIGR00385 dsbE periplasmic pro 40.2 47 0.001 30.4 4.7 44 320-363 127-170 (173)
400 TIGR02739 TraF type-F conjugat 38.7 1.6E+02 0.0035 29.1 8.4 41 320-360 203-244 (256)
401 cd03074 PDI_b'_Calsequestrin_C 38.1 88 0.0019 26.7 5.4 44 397-462 23-67 (120)
402 TIGR03044 PS_II_psb27 photosys 37.2 1.3E+02 0.0029 26.6 6.6 56 41-101 50-110 (135)
403 cd03060 GST_N_Omega_like GST_N 37.0 58 0.0013 24.6 4.1 51 158-221 2-53 (71)
404 PLN02919 haloacid dehalogenase 36.8 1.6E+02 0.0034 35.4 9.4 44 320-363 492-535 (1057)
405 cd03023 DsbA_Com1_like DsbA fa 36.8 43 0.00094 29.1 3.8 34 201-249 120-153 (154)
406 cd03041 GST_N_2GST_N GST_N fam 35.7 1E+02 0.0022 23.8 5.3 73 158-252 3-76 (77)
407 PRK15412 thiol:disulfide inter 35.2 72 0.0016 29.5 5.1 42 321-362 133-174 (185)
408 cd02967 mauD Methylamine utili 33.1 1.3E+02 0.0028 24.7 6.0 42 293-334 40-82 (114)
409 PF13743 Thioredoxin_5: Thiore 30.9 32 0.00069 31.8 2.0 20 200-225 137-156 (176)
410 PRK10877 protein disulfide iso 30.4 80 0.0017 30.6 4.7 40 319-363 191-230 (232)
411 PF01323 DSBA: DSBA-like thior 28.5 73 0.0016 29.1 4.0 35 201-249 158-192 (193)
412 COG5552 Uncharacterized conser 27.4 98 0.0021 24.4 3.7 34 36-69 2-39 (88)
413 COG1651 DsbG Protein-disulfide 26.8 1.4E+02 0.003 28.7 5.7 38 320-363 205-242 (244)
414 cd03071 PDI_b'_NRX PDIb' famil 26.6 1.5E+02 0.0032 25.4 4.9 26 397-422 16-43 (116)
415 PF09673 TrbC_Ftype: Type-F co 25.1 2.4E+02 0.0053 24.0 6.3 45 170-225 36-80 (113)
416 PF07739 TipAS: TipAS antibiot 24.8 1.2E+02 0.0027 25.3 4.4 53 44-102 51-105 (118)
417 cd03025 DsbA_FrnE_like DsbA fa 24.8 86 0.0019 28.7 3.7 27 157-183 3-29 (193)
418 PRK13703 conjugal pilus assemb 24.5 3.5E+02 0.0076 26.6 8.0 40 321-360 197-237 (248)
419 COG2761 FrnE Predicted dithiol 23.8 1.3E+02 0.0028 29.2 4.7 39 201-253 175-213 (225)
420 PRK13728 conjugal transfer pro 23.4 6.1E+02 0.013 23.7 9.3 43 320-362 124-169 (181)
421 PF11539 DUF3228: Protein of u 23.2 15 0.00032 34.4 -1.8 28 140-167 24-55 (197)
422 cd00570 GST_N_family Glutathio 23.2 1.2E+02 0.0026 21.6 3.7 53 159-222 3-55 (71)
423 cd03031 GRX_GRX_like Glutaredo 23.1 1E+02 0.0023 27.7 3.7 60 157-226 2-68 (147)
424 cd02977 ArsC_family Arsenate R 22.9 30 0.00066 28.8 0.2 31 158-194 2-32 (105)
425 cd03035 ArsC_Yffb Arsenate Red 21.1 33 0.00072 28.9 0.1 15 158-172 2-16 (105)
426 cd03037 GST_N_GRX2 GST_N famil 20.7 1.9E+02 0.0042 21.6 4.4 15 159-173 3-17 (71)
427 TIGR02742 TrbC_Ftype type-F co 20.6 1.9E+02 0.0041 25.5 4.8 22 319-340 60-81 (130)
428 PF12434 Malate_DH: Malate deh 20.2 1.1E+02 0.0023 19.4 2.1 16 51-66 10-25 (28)
429 cd03059 GST_N_SspA GST_N famil 20.1 1.6E+02 0.0035 21.9 3.8 70 158-252 2-72 (73)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=322.57 Aligned_cols=290 Identities=21% Similarity=0.268 Sum_probs=227.1
Q ss_pred eEEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
.|++||.+||+..|..++.+||+|||||||||++++|+|++||+.|+.. +++|+|||+++ ..+|++|+
T Consensus 26 ~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~------ 96 (493)
T KOG0190|consen 26 DVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYE------ 96 (493)
T ss_pred ceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhc------
Confidence 4899999999999999999999999999999999999999999999874 79999999965 55999999
Q ss_pred eeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHhhcCCcccccccchhhhhhhhhcCCCcEEEEEEecCCCCCc
Q 010886 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERAS 293 (498)
Q Consensus 214 I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~ 293 (498)
|+||||+++|++|.. +..|+|+|++++|+.|++++ .+|+...+.+.+..+.|+.+.+ +.|+.|........
T Consensus 97 v~gyPTlkiFrnG~~----~~~Y~G~r~adgIv~wl~kq--~gPa~~~l~~~~~a~~~l~~~~---~~vig~F~d~~~~~ 167 (493)
T KOG0190|consen 97 VRGYPTLKIFRNGRS----AQDYNGPREADGIVKWLKKQ--SGPASKTLKTVDEAEEFLSKKD---VVVIGFFKDLESLA 167 (493)
T ss_pred CCCCCeEEEEecCCc----ceeccCcccHHHHHHHHHhc--cCCCceecccHHHHHhhccCCc---eEEEEEecccccch
Confidence 999999999999984 35999999999999999999 6888877777777888887533 44444443222223
Q ss_pred HHHHHHHHhccccceEEEEEecccccHHHHHHcCCCC--CCEEEEEeCCCCceeeecCCCChhHHHHHHHhcccCCCCcc
Q 010886 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQL 371 (498)
Q Consensus 294 ~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~--~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~~~~~vp~l 371 (498)
..+...|..+++++.|++.. ..++.++++++. .+.++++++.++..+.|.|+++.+.|.+||..+++|+++++
T Consensus 168 ~~~~~~a~~l~~d~~F~~ts-----~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~f 242 (493)
T KOG0190|consen 168 ESFFDAASKLRDDYKFAHTS-----DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEF 242 (493)
T ss_pred HHHHHHHHhccccceeeccC-----cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhccccccee
Confidence 44555666778888888542 345888888753 45699999988888888999999999999999999999999
Q ss_pred cccchhhhccCCCCCcCCCCCCceeEEEEEeCC-CchhhHHHHHHHHHHHHhhcccccccccccCCCchHHHHhccCCce
Q 010886 372 RSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRL 450 (498)
Q Consensus 372 t~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~-~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 450 (498)
|..+.... +....+ +-++++.. .....+.+++.++++|+ +|+++ +
T Consensus 243 t~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~e~~~~~~~~vAk----------------------~f~~~-l 288 (493)
T KOG0190|consen 243 TVANNAKI------YSSFVK-----LGLDFFVFFKCNRFEELRKKFEEVAK----------------------KFKGK-L 288 (493)
T ss_pred ccccccee------eccccc-----cceeEEeccccccHHHHHHHHHHHHH----------------------hcccc-e
Confidence 99775331 111111 33444442 22368899999999999 88885 9
Q ss_pred EEEEEeCccCchhhhhhhhhhheeeeccC--Cc-eeeeeecccce
Q 010886 451 TFAWLDGEAQDVSFIMLISLFYVDFFLHS--DL-FVLWLLFPSMS 492 (498)
Q Consensus 451 ~f~wvd~~~q~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~ 492 (498)
+|+.+|.+..+. ...+|.-. .. +.+++++.-|+
T Consensus 289 ~Fi~~d~e~~~~---------~~~~~Gl~~~~~~~~~v~~~~~~~ 324 (493)
T KOG0190|consen 289 RFILIDPESFAR---------VLEFFGLEEEQLPIRAVILNEDGS 324 (493)
T ss_pred EEEEEChHHhhH---------HHHhcCcccccCCeeEEeeccccc
Confidence 999998888777 44444433 23 47888877765
No 2
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=241.53 Aligned_cols=258 Identities=18% Similarity=0.287 Sum_probs=176.9
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~ 227 (498)
++++.|+|.||||||+||+++.|.|.++.-+|+.. ++||++||+ ....+|++++ |+|||||++|++|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT---~f~aiAnefg------iqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT---RFPAIANEFG------IQGYPTIKFFKGDH 111 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc---cchhhHhhhc------cCCCceEEEecCCe
Confidence 67889999999999999999999999999999875 799999999 5555999999 99999999999987
Q ss_pred cCCCCcccccCCCCHHHHHHHHHHHhhcCCcccccccchhhhhhhhhcCCCcEEEEEEecCCCCCcHHHHH---HHHhcc
Q 010886 228 KSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQ---ISRNYW 304 (498)
Q Consensus 228 ~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~---~A~~~~ 304 (498)
.. +|+|+|+.++|++|+.+- ..|-...++........++. .+.|+.+||+.. ..|.+.. +|..
T Consensus 112 a~-----dYRG~R~Kd~iieFAhR~--a~aiI~pi~enQ~~fehlq~--Rhq~ffVf~Gtg---e~PL~d~fidAASe-- 177 (468)
T KOG4277|consen 112 AI-----DYRGGREKDAIIEFAHRC--AAAIIEPINENQIEFEHLQA--RHQPFFVFFGTG---EGPLFDAFIDAASE-- 177 (468)
T ss_pred ee-----ecCCCccHHHHHHHHHhc--ccceeeecChhHHHHHHHhh--ccCceEEEEeCC---CCcHHHHHHHHhhh--
Confidence 64 999999999999999886 23433334332211222322 345899999833 2333322 3332
Q ss_pred ccceEEEEEecccccHHHHHHcC-CCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhcccCCCCcccccchhhhccCC
Q 010886 305 AYASFAFVLWREEESSIWWNTFE-VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDA 383 (498)
Q Consensus 305 ~~~~f~~v~~~~~~~~~l~~~f~-V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~~~~~vp~lt~~~~~~~~c~~ 383 (498)
....++.. ++ +++++..++ .+.-|++.+||+.. -.+..+| +.++|.+||+.+++|-+-..++.+..+.+-.
T Consensus 178 -~~~~a~Ff--Sa-seeVaPe~~~~kempaV~VFKDet-f~i~de~--dd~dLseWinRERf~~fLa~dgflL~EiG~s- 249 (468)
T KOG4277|consen 178 -KFSVARFF--SA-SEEVAPEENDAKEMPAVAVFKDET-FEIEDEG--DDEDLSEWINRERFPGFLAADGFLLAEIGAS- 249 (468)
T ss_pred -heeeeeee--cc-ccccCCcccchhhccceEEEccce-eEEEecC--chhHHHHHHhHhhccchhhcccchHHHhCcC-
Confidence 22233332 21 223333333 22469999999743 2233344 4578999999999998887777777664332
Q ss_pred CCCcCCCCCCceeEEEEEeCC------CchhhHHHHHHHHHHHHhhcccccccccccCCCchHHHHhccCCceEEEEEeC
Q 010886 384 RGYSRAGSDTTIWYCVILAGR------LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDG 457 (498)
Q Consensus 384 ~~~~~~~k~~~~~lcvi~~~~------~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~wvd~ 457 (498)
+| |.++.+.+ ++.+..++.....++|+-+|..-+ |-+ ++.|+|+|+
T Consensus 250 ------GK-----LVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pd----------------fh~-dFQF~hlDG 301 (468)
T KOG4277|consen 250 ------GK-----LVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPD----------------FHN-DFQFAHLDG 301 (468)
T ss_pred ------Cc-----eEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChh----------------hhh-hceeeccch
Confidence 44 66666643 234566677777777774443111 222 589999999
Q ss_pred ccCchhhhhh
Q 010886 458 EAQDVSFIML 467 (498)
Q Consensus 458 ~~q~~~~~~~ 467 (498)
+..++.|.|.
T Consensus 302 nD~~nqilM~ 311 (468)
T KOG4277|consen 302 NDLANQILMA 311 (468)
T ss_pred hHHHHHHHHH
Confidence 9999977775
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.96 E-value=6e-28 Score=256.96 Aligned_cols=289 Identities=16% Similarity=0.218 Sum_probs=211.5
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|++||.++|++.++++++++|.||||||++|+++.|+|.++|+.+++. +.+++|||+++. ++|++++ |
T Consensus 3 v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------i 73 (462)
T TIGR01130 3 VLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK---DLAQKYG------V 73 (462)
T ss_pred ceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH---HHHHhCC------C
Confidence 688999999999999999999999999999999999999999998754 799999999664 4999999 9
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHhhcCCcccccccchhhhhhhhhcCCCcEEEEEEecCCCCCcH
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASP 294 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~ 294 (498)
+++||+++|++|... ...|.|.++.++|++|+.+.+ .|....+++.+.++.|++.. +..+|+++.+..+....
T Consensus 74 ~~~Pt~~~~~~g~~~---~~~~~g~~~~~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~~--~~~vi~~~~~~~~~~~~ 146 (462)
T TIGR01130 74 SGYPTLKIFRNGEDS---VSDYNGPRDADGIVKYMKKQS--GPAVKEIETVADLEAFLADD--DVVVIGFFKDLDSELND 146 (462)
T ss_pred ccccEEEEEeCCccc---eeEecCCCCHHHHHHHHHHhc--CCCceeecCHHHHHHHHhcC--CcEEEEEECCCCcHHHH
Confidence 999999999998751 248999999999999999982 34444466656678888752 23344444432333344
Q ss_pred HHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCce--eeecCCC--ChhHHHHHHHhcccCCCCc
Q 010886 295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSF--NNSRLSEVMEQNKLQELPQ 370 (498)
Q Consensus 295 ~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~--~~y~g~~--~~~~L~~fi~~~~~~~vp~ 370 (498)
.+..+|..+.+...+ ++... ...+.++++.. .+++++|+..+... ..|.|+. +.+.|.+||+.+++|++++
T Consensus 147 ~~~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~ 221 (462)
T TIGR01130 147 TFLSVAEKLRDVYFF-FAHSS---DVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGE 221 (462)
T ss_pred HHHHHHHHhhhccce-EEecC---CHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEe
Confidence 556677776655442 22221 23467777764 36677776544333 3567765 4579999999999999999
Q ss_pred ccccchhhhccCCCCCcCCCCCCceeEEEEEeC-C-CchhhHHHHHHHHHHHHhhcccccccccccCCCchHHHHhccCC
Q 010886 371 LRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-R-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNK 448 (498)
Q Consensus 371 lt~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~-~-~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 448 (498)
++..+.... +.. + .++++++. + .....+.+.+.++++|+ +|++.
T Consensus 222 ~~~~~~~~~-~~~------~-----~~~~l~~~~~~~~~~~~~~~~~~~~~a~----------------------~~~~~ 267 (462)
T TIGR01130 222 FTQETAAKY-FES------G-----PLVVLYYNVDESLDPFEELRNRFLEAAK----------------------KFRGK 267 (462)
T ss_pred eCCcchhhH-hCC------C-----CceeEEEEecCCchHHHHHHHHHHHHHH----------------------HCCCC
Confidence 998876442 111 0 13334332 2 22224778888888888 78765
Q ss_pred ceEEEEEeCccCchhhhhhhhhhheeeeccC--Cceeeeeeccc
Q 010886 449 RLTFAWLDGEAQDVSFIMLISLFYVDFFLHS--DLFVLWLLFPS 490 (498)
Q Consensus 449 ~~~f~wvd~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 490 (498)
.+.|+|+|+..... ++..|..+ ++|.++|+++.
T Consensus 268 ~i~f~~~d~~~~~~---------~~~~~~~~~~~~P~~vi~~~~ 302 (462)
T TIGR01130 268 FVNFAVADEEDFGR---------ELEYFGLKAEKFPAVAIQDLE 302 (462)
T ss_pred eEEEEEecHHHhHH---------HHHHcCCCccCCceEEEEeCC
Confidence 69999999998888 77767766 69999999876
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.95 E-value=7.8e-27 Score=250.08 Aligned_cols=275 Identities=17% Similarity=0.244 Sum_probs=199.2
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc---cceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|.+|+.++|++.+++++.++|.||||||+||+++.|+|+++|+.+++ .+.+++|||+++. .+|++++ |
T Consensus 34 v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~---~l~~~~~------i 104 (477)
T PTZ00102 34 VTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM---ELAQEFG------V 104 (477)
T ss_pred cEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH---HHHHhcC------C
Confidence 68899999999998899999999999999999999999999998864 4899999999655 4999999 9
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHhhcCCcccccccchhhhhhhhhcCCCcEEEE-EEecCCCCCc
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERAS 293 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~~it~~~~~~~fl~~~~~~~~~vl-~f~~~~~~~~ 293 (498)
++|||+++|++|... .|.|.+++++|++|+.+. ..|....+++.+....+... ..+.++ .+.+..+...
T Consensus 105 ~~~Pt~~~~~~g~~~-----~y~g~~~~~~l~~~l~~~--~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 174 (477)
T PTZ00102 105 RGYPTIKFFNKGNPV-----NYSGGRTADGIVSWIKKL--TGPAVTEVESASEIKLIAKK---IFVAFYGEYTSKDSELY 174 (477)
T ss_pred CcccEEEEEECCceE-----EecCCCCHHHHHHHHHHh--hCCCceeecCHHHHHHhhcc---CcEEEEEEeccCCcHHH
Confidence 999999999998653 899999999999999998 35555556654434443322 224333 4443332223
Q ss_pred HHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhcccCCCCcccc
Q 010886 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRS 373 (498)
Q Consensus 294 ~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~~~~~vp~lt~ 373 (498)
..+..+|..+++...|..+. +. ..+.+++++..+.....|.| .+.++|.+||+.+.+|++.+++.
T Consensus 175 ~~f~~~a~~~~~~~~F~~~~--~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~ 239 (477)
T PTZ00102 175 KKFEEVADKHREHAKFFVKK--HE------------GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINA 239 (477)
T ss_pred HHHHHHHHhccccceEEEEc--CC------------CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCc
Confidence 34455777777776665442 11 24678888865544444444 58899999999999999999999
Q ss_pred cchhhhccCCCCCcCCCCCCceeEEEEEeCCCchhhHHHHHHHHHHHHhhcccccccccccCCCchHHHHhccCCceEEE
Q 010886 374 VTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFA 453 (498)
Q Consensus 374 ~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~ 453 (498)
.++....-. + ..++++....++.+.+.+.++++|+ +++++ +.|+
T Consensus 240 ~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~~A~----------------------~~~~~-~~f~ 283 (477)
T PTZ00102 240 ENYRRYISS-------G------KDLVWFCGTTEDYDKYKSVVRKVAR----------------------KLREK-YAFV 283 (477)
T ss_pred cchHHHhcC-------C------ccEEEEecCHHHHHHHHHHHHHHHH----------------------hccCc-eEEE
Confidence 987542211 1 1223332233456677888888888 78775 8899
Q ss_pred EEeCccCchhhhhhhhhhheeeeccCCceeeeeeccc
Q 010886 454 WLDGEAQDVSFIMLISLFYVDFFLHSDLFVLWLLFPS 490 (498)
Q Consensus 454 wvd~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (498)
|+|+..... .+++.|....+|.+++.+..
T Consensus 284 ~vd~~~~~~--------~~~~~~gi~~~P~~~i~~~~ 312 (477)
T PTZ00102 284 WLDTEQFGS--------HAKEHLLIEEFPGLAYQSPA 312 (477)
T ss_pred EEechhcch--------hHHHhcCcccCceEEEEcCC
Confidence 999987543 13445666678988887643
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-25 Score=219.58 Aligned_cols=144 Identities=17% Similarity=0.098 Sum_probs=103.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhhhhHcCChhhhhcccccCCchhhhhh---h
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHIL---E 109 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~~~~---~ 109 (498)
.+|||++|||+++|+..|||+||||||++||||+|| .++++|++|+.||||||||++|+.||+||+++..... +
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~ 94 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGE 94 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccc
Confidence 789999999999999999999999999999999998 4788899999999999999999999999988876321 1
Q ss_pred hhhcccCCcccccccCCCCCCCCCCceeEEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEE
Q 010886 110 KVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG 189 (498)
Q Consensus 110 ~~~~~~~~~~f~~~~~~~y~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va 189 (498)
.++..++-+.++..+||+..+... +.+. .....|++.++.-.|.||-...+.|+...+-....+.-+
T Consensus 95 ~g~~~~~~f~~~f~dfg~~~~g~~-------~~e~------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~ 161 (336)
T KOG0713|consen 95 GGGGGNDIFSAFFGDFGVTVGGNP-------LEEA------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGT 161 (336)
T ss_pred cCCcccchHHHhhcccccccCCCc-------ccCC------CCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcc
Confidence 111112323333333443322211 1111 345567777777889999998888887766544333333
Q ss_pred EEE
Q 010886 190 MVE 192 (498)
Q Consensus 190 ~Vd 192 (498)
+.+
T Consensus 162 ~~~ 164 (336)
T KOG0713|consen 162 RKC 164 (336)
T ss_pred ccc
Confidence 333
No 6
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.90 E-value=3.6e-23 Score=198.96 Aligned_cols=214 Identities=14% Similarity=0.205 Sum_probs=152.1
Q ss_pred ecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc-----cceEEEEEcccchhhhHHHHhCCCCccccee
Q 010886 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-----IANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (498)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~-----~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~ 215 (498)
||..|++..+++.+.++|.|||+||..++.|+|+|+++|..++. .+.+|+|||+ .+..++.+|. |.
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd---~e~~ia~ky~------I~ 71 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD---KEDDIADKYH------IN 71 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc---hhhHHhhhhc------cc
Confidence 46789999999999999999999999999999999999999863 4689999999 5556999998 99
Q ss_pred eeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHhhcCCcccccccchhhhhhhhhcC-CCcEEEEEEecCCCCCcH
Q 010886 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTG-PHKVKVIFFSKTGERASP 294 (498)
Q Consensus 216 ~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~~it~~~~~~~fl~~~~-~~~~~vl~f~~~~~~~~~ 294 (498)
.|||+++|++|... ..+|+|.|+++++.+|+++++. -|... ..+ ++++-.... ....++.+|-+++.....
T Consensus 72 KyPTlKvfrnG~~~---~rEYRg~RsVeaL~efi~kq~s-~~i~E-f~s---l~~l~n~~~p~K~~vIgyF~~kdspey~ 143 (375)
T KOG0912|consen 72 KYPTLKVFRNGEMM---KREYRGQRSVEALIEFIEKQLS-DPINE-FES---LDQLQNLDIPSKRTVIGYFPSKDSPEYD 143 (375)
T ss_pred cCceeeeeeccchh---hhhhccchhHHHHHHHHHHHhc-cHHHH-HHh---HHHHHhhhccccceEEEEeccCCCchHH
Confidence 99999999999764 4589999999999999999832 22111 111 222222111 233566666544333344
Q ss_pred HHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCce-eeecCCCC-hhHHHHHHHhcccCCCCccc
Q 010886 295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP-VVYYGSFN-NSRLSEVMEQNKLQELPQLR 372 (498)
Q Consensus 295 ~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~-~~y~g~~~-~~~L~~fi~~~~~~~vp~lt 372 (498)
.++.+|.-++++..|..- ..+.. ....-.+. .+++|.+....+ ..|.|.++ .+.|+.||.+.-.|+|-++|
T Consensus 144 ~~~kva~~lr~dc~f~V~-~gD~~-----~~~~~~~~-~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiT 216 (375)
T KOG0912|consen 144 NLRKVASLLRDDCVFLVG-FGDLL-----KPHEPPGK-NILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREIT 216 (375)
T ss_pred HHHHHHHHHhhccEEEee-ccccc-----cCCCCCCC-ceEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhh
Confidence 456677778877765433 22211 11111111 256665543333 36899974 68899999999999999999
Q ss_pred ccchhh
Q 010886 373 SVTSME 378 (498)
Q Consensus 373 ~~~~~~ 378 (498)
-+|.-+
T Consensus 217 FeN~EE 222 (375)
T KOG0912|consen 217 FENAEE 222 (375)
T ss_pred hccHHH
Confidence 999755
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.89 E-value=1.7e-23 Score=180.40 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=94.0
Q ss_pred CCCCCCCCCceeEEEecCCCCccc---ccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHH
Q 010886 126 PLLDATDHSVHAFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHL 202 (498)
Q Consensus 126 ~~y~~~~~~~~~V~~Lt~~nF~~~---v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l 202 (498)
++|.++ + .|++|+++||++. ++++++++|.||||||+||+.++|.|+++|+.+++.+.|++|||+++.. +
T Consensus 3 ~~~~~~-~---~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~---l 75 (113)
T cd03006 3 PFFSQR-S---PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG---K 75 (113)
T ss_pred CccCCC-C---CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH---H
Confidence 455554 2 3899999999986 5899999999999999999999999999999999889999999996654 8
Q ss_pred H-HhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 203 A-ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 203 ~-~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
| ++++ |++||||++|++|.. +..|.|.++.++|+.|+
T Consensus 76 ~~~~~~------I~~~PTl~lf~~g~~----~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 76 CRKQKH------FFYFPVIHLYYRSRG----PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHHhcC------CcccCEEEEEECCcc----ceEEeCCCCHHHHHhhC
Confidence 8 5888 999999999999865 46899999999999984
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.86 E-value=5.7e-22 Score=167.56 Aligned_cols=99 Identities=23% Similarity=0.524 Sum_probs=91.1
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeee
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~ 217 (498)
|++||.++|+..++++++|+|.||||||++|+++.|.|+++|+.+++.+.|++|||++++ .+|++++ |++|
T Consensus 3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~~ 73 (101)
T cd03003 3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR---MLCRSQG------VNSY 73 (101)
T ss_pred eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH---HHHHHcC------CCcc
Confidence 678999999999988899999999999999999999999999999988999999999665 4999999 9999
Q ss_pred eEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
||+++|++|.. ...|.|.++.++|++|+
T Consensus 74 Pt~~~~~~g~~----~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 74 PSLYVFPSGMN----PEKYYGDRSKESLVKFA 101 (101)
T ss_pred CEEEEEcCCCC----cccCCCCCCHHHHHhhC
Confidence 99999999864 45899999999999884
No 9
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.3e-22 Score=201.70 Aligned_cols=71 Identities=30% Similarity=0.499 Sum_probs=67.2
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 35 ~~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
...|||+||||+++||.+|||+|||+||++||||+|+ .+.++|++|++|||||+||++|+.||+||+.+..
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 3679999999999999999999999999999999998 4788999999999999999999999999999865
No 10
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.86 E-value=3.8e-22 Score=171.50 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=88.1
Q ss_pred EEEecCCCCcccccCCCcEEEEEec--CCCC---CCCCChHHHHHHHHHhhccceEEEEEcccc--hhhhHHHHhCCCCc
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYS--DGSY---LCGQFSGAWKTIAALLEGIANTGMVELGDI--RLATHLAERKPIGQ 210 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYa--pwC~---~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~--~~~~~l~~~~~~~~ 210 (498)
+++||+.||+++|++++.+||+||| |||+ ||++|+|+|.++|.. +.||+|||++. ..+.+||++|+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~--- 75 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYK--- 75 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhC---
Confidence 6889999999999999999999999 9999 999999999888764 78999999521 12356999999
Q ss_pred cccee--eeeEEEEeCCCCcCCCCcccccCC-CCHHHHHHHHHHH
Q 010886 211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA 252 (498)
Q Consensus 211 ~~~I~--~~PTl~~f~~g~~~~~~~~~Y~G~-r~~~~Iv~fv~k~ 252 (498)
|+ +||||++|++|... .+..|+|+ |++++|++|+.++
T Consensus 76 ---I~~~gyPTl~lF~~g~~~--~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 ---LDKESYPVIYLFHGGDFE--NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred ---CCcCCCCEEEEEeCCCcC--CCccCCCCcccHHHHHHHHHhc
Confidence 98 99999999998521 14589997 9999999999875
No 11
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.6e-21 Score=198.04 Aligned_cols=210 Identities=17% Similarity=0.325 Sum_probs=156.3
Q ss_pred EEecCCCCccc-ccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeee
Q 010886 139 NVVTSEDFPSI-FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (498)
Q Consensus 139 ~~Lt~~nF~~~-v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~ 217 (498)
..++..+|... ...+..|+|+||+|||+||+++.|+|+++++.|++.+.+|.|||++++ .+|++++ |+||
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~---~~~~~y~------i~gf 102 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK---DLCEKYG------IQGF 102 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH---HHHHhcC------CccC
Confidence 34455555554 488999999999999999999999999999999999999999999665 4999999 9999
Q ss_pred eEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHhhcCCccc------ccccchhhhhhhhhcCCCcEEEEEEec---C
Q 010886 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIF------YYTKESMGKNFLAKTGPHKVKVIFFSK---T 288 (498)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~------~it~~~~~~~fl~~~~~~~~~vl~f~~---~ 288 (498)
||+++|.+| .. +..|.|.++++.+.+|+.+.+....... .++..+ ++..... .++.++|.+|.+ +
T Consensus 103 Ptl~~f~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~-~~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 103 PTLKVFRPG-KK---PIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN-FDETVKD-SDADWLVEFYAPWCGH 176 (383)
T ss_pred cEEEEEcCC-Cc---eeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc-hhhhhhc-cCcceEEEEeccccHH
Confidence 999999999 32 5699999999999999988743221111 122222 2222222 234477778775 2
Q ss_pred CCCCcHHHHHHHHhcc--ccceEEEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhccc
Q 010886 289 GERASPFVRQISRNYW--AYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL 365 (498)
Q Consensus 289 ~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~~~ 365 (498)
++...+.+..++..+. ..+.++. .+|+ ...++++++|..+|++.+|++++.....|.|.++.+.|..|++...-
T Consensus 177 ck~l~~~~~~~a~~~~~~~~v~~~~---~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSKENVELGK---IDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred hhhcChHHHHHHHHhccCcceEEEe---eccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcC
Confidence 3445678888887664 3333443 3443 37799999999999999999876624556888999999999997654
Q ss_pred C
Q 010886 366 Q 366 (498)
Q Consensus 366 ~ 366 (498)
+
T Consensus 254 ~ 254 (383)
T KOG0191|consen 254 R 254 (383)
T ss_pred C
Confidence 4
No 12
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=6e-21 Score=163.39 Aligned_cols=101 Identities=20% Similarity=0.303 Sum_probs=90.3
Q ss_pred eEEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc------cceEEEEEcccchhhhHHHHhCCCCc
Q 010886 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG------IANTGMVELGDIRLATHLAERKPIGQ 210 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~------~i~va~Vdc~~~~~~~~l~~~~~~~~ 210 (498)
.|++|+++||++.++++++++|.||||||++|+++.|.|+++|+.+++ .+.+++|||++++ ++|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~--- 75 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---DIADRYR--- 75 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---HHHHhCC---
Confidence 378999999999998899999999999999999999999999998752 3789999999664 4999999
Q ss_pred ccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 211 ~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
|+++||+++|++|... ...|.|.++.++|++|+
T Consensus 76 ---v~~~Ptl~~~~~g~~~---~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 ---INKYPTLKLFRNGMMM---KREYRGQRSVEALAEFV 108 (108)
T ss_pred ---CCcCCEEEEEeCCcCc---ceecCCCCCHHHHHhhC
Confidence 9999999999999742 46899999999999985
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.82 E-value=1.1e-20 Score=160.29 Aligned_cols=100 Identities=21% Similarity=0.463 Sum_probs=89.6
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
|.+||.++|++.+ +++++++|.||||||++|+++.|.|+++|+++.+.+.+++|||++++ .+|++++ |++
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------i~~ 73 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE---SLCQQAN------IRA 73 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH---HHHHHcC------CCc
Confidence 6789999999987 66779999999999999999999999999999888999999999655 4999999 999
Q ss_pred eeEEEEeCCCCcCCCCcccccCCCC-HHHHHHHH
Q 010886 217 LPSLVAFPPGCKSSDCMTRFEGELS-VDAVTDWF 249 (498)
Q Consensus 217 ~PTl~~f~~g~~~~~~~~~Y~G~r~-~~~Iv~fv 249 (498)
+||+++|.+|+.. ...|.|.++ .++|.+|+
T Consensus 74 ~Pt~~~~~~g~~~---~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 74 YPTIRLYPGNASK---YHSYNGWHRDADSILEFI 104 (104)
T ss_pred ccEEEEEcCCCCC---ceEccCCCCCHHHHHhhC
Confidence 9999999998432 568999987 99999885
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.80 E-value=4.8e-20 Score=155.16 Aligned_cols=102 Identities=17% Similarity=0.361 Sum_probs=94.0
Q ss_pred EEEecCCCCcccccC-CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 138 FNVVTSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~-~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
|.++|.++|++.+.+ +++++|.||+|||++|+.+.|.|+++++.+++.+.++.|||++++. +|++++ |++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~------v~~ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE---LCKKYG------VKS 71 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH---HHHHTT------CSS
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch---hhhccC------CCC
Confidence 568999999999966 9999999999999999999999999999999889999999996654 999999 999
Q ss_pred eeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 217 ~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+||+++|.+|... ..|.|.++.++|.+|++++
T Consensus 72 ~Pt~~~~~~g~~~----~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 72 VPTIIFFKNGKEV----KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSEEEEEETTEEE----EEEESSSSHHHHHHHHHHH
T ss_pred CCEEEEEECCcEE----EEEECCCCHHHHHHHHHcC
Confidence 9999999999763 4899999999999999874
No 15
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3e-20 Score=185.05 Aligned_cols=72 Identities=33% Similarity=0.540 Sum_probs=68.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcCChhhhhcccccCCchhhhh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHI 107 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~~~ 107 (498)
...+|++|||+++||.+|||+|||+||++|||||||++.|+|++|..|||+||||++|+.||+||+++.+.+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g 74 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG 74 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence 468999999999999999999999999999999999999999999999999999999999999998887543
No 16
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.79 E-value=1.2e-19 Score=153.13 Aligned_cols=98 Identities=17% Similarity=0.364 Sum_probs=86.8
Q ss_pred eEEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCccccee
Q 010886 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~ 215 (498)
.|.+||.++|++.+++. |+|.||||||++|+++.|.|+++|+.+++. +.+++|||++++. +|++++ |+
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~------i~ 70 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFF------VT 70 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcC------Cc
Confidence 37899999999988543 899999999999999999999999988754 8999999996654 899998 99
Q ss_pred eeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHH
Q 010886 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (498)
Q Consensus 216 ~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~ 250 (498)
++||+++|++|.. ..|.|.++.++|++|+.
T Consensus 71 ~~Pt~~~~~~g~~-----~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 71 ALPTIYHAKDGVF-----RRYQGPRDKEDLISFIE 100 (101)
T ss_pred ccCEEEEeCCCCE-----EEecCCCCHHHHHHHHh
Confidence 9999999999864 37999999999999985
No 17
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.78 E-value=2.9e-19 Score=152.71 Aligned_cols=105 Identities=20% Similarity=0.391 Sum_probs=90.9
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
|.+|++++|++.+ +++++++|.||||||++|+++.|.|+++|+.+.+.+.++.|||+++. ...+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~------i~~ 74 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYG------VQG 74 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcC------CCc
Confidence 6789999999988 56777999999999999999999999999999988899999999632 345999999 999
Q ss_pred eeEEEEeCCCCcC-CCCcccccCCCCHHHHHHHH
Q 010886 217 LPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 217 ~PTl~~f~~g~~~-~~~~~~Y~G~r~~~~Iv~fv 249 (498)
+||+++|.+|... ......|.|.++.++|++|+
T Consensus 75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9999999998621 01245899999999999997
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.78 E-value=5.1e-19 Score=153.79 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=84.6
Q ss_pred EEEecCCCCcccccCCC-cEEEEEecCCCC--CCC--CChHHHHHHHHHh--hccceEEEEEcccchhhhHHHHhCCCCc
Q 010886 138 FNVVTSEDFPSIFHDSK-PWLIQVYSDGSY--LCG--QFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQ 210 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~-~~lV~FYapwC~--~C~--~l~p~~~~~A~~l--~~~i~va~Vdc~~~~~~~~l~~~~~~~~ 210 (498)
|.+||++||++.|.+++ +++|.|+++||+ ||+ .++|..+++|.++ ++.++|++|||++++. ||++|+
T Consensus 11 v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~---La~~~~--- 84 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK---VAKKLG--- 84 (120)
T ss_pred eeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH---HHHHcC---
Confidence 78999999999995555 555666666675 599 7788888887776 6679999999996654 999999
Q ss_pred ccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 211 ~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
|+++|||++|++|+.. .|.|.++.+.|++|+.+.
T Consensus 85 ---I~~iPTl~lfk~G~~v-----~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 85 ---LDEEDSIYVFKDDEVI-----EYDGEFAADTLVEFLLDL 118 (120)
T ss_pred ---CccccEEEEEECCEEE-----EeeCCCCHHHHHHHHHHH
Confidence 9999999999999753 599999999999999865
No 19
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.77 E-value=3.5e-19 Score=152.86 Aligned_cols=101 Identities=13% Similarity=0.325 Sum_probs=87.6
Q ss_pred EEEecCCCCcccc---cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHh-CCCCccc
Q 010886 138 FNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER-KPIGQIF 212 (498)
Q Consensus 138 V~~Lt~~nF~~~v---~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~-~~~~~~~ 212 (498)
|.+++.++|+..+ +++++|+|.||+|||+||+++.|.|+++|+.+++. +.+++|||+.+. ..+|.+ ++
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~----- 75 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQ----- 75 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcC-----
Confidence 7899999999988 46789999999999999999999999999999875 899999999621 237764 77
Q ss_pred ceeeeeEEEEeCCCCcCCCCcccccCC-CCHHHHHHHH
Q 010886 213 FRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (498)
Q Consensus 213 ~I~~~PTl~~f~~g~~~~~~~~~Y~G~-r~~~~Iv~fv 249 (498)
|+++||+++|.+|... +..|.|+ |++++|++|+
T Consensus 76 -v~~~Pti~~f~~~~~~---~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 76 -LKSFPTILFFPKNSRQ---PIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred -CCcCCEEEEEcCCCCC---ceeccCCCCCHHHHHhhC
Confidence 9999999999988653 5689995 9999999985
No 20
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=1.3e-18 Score=146.95 Aligned_cols=100 Identities=24% Similarity=0.447 Sum_probs=89.5
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
|.++++++|++.+ +.+.+++|.||+|||++|+++.|.|.++|+.+.+.+.++.+||+++. .+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~------i~~ 72 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ---SLAQQYG------VRG 72 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH---HHHHHCC------CCc
Confidence 6789999999988 55666999999999999999999999999999988999999999665 4999998 999
Q ss_pred eeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 217 ~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
+||+++|.+|... ...|.|+++.++|++|+
T Consensus 73 ~P~~~~~~~~~~~---~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 73 FPTIKVFGAGKNS---PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cCEEEEECCCCcc---eeecCCCCCHHHHHHHh
Confidence 9999999998432 56899999999999997
No 21
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.75 E-value=1.8e-16 Score=156.07 Aligned_cols=290 Identities=17% Similarity=0.216 Sum_probs=180.4
Q ss_pred CCCCCCCCCCceeEEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHH-------HHHHHHhhcc-ceEEEEEcccc
Q 010886 125 LPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW-------KTIAALLEGI-ANTGMVELGDI 196 (498)
Q Consensus 125 ~~~y~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~-------~~~A~~l~~~-i~va~Vdc~~~ 196 (498)
||-|+|.+ .|.+||.+||++++++.+...|.||.|--+ .+.....| +=+|+.|... +.||.||..++
T Consensus 27 fP~YDGkD----RVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd 101 (383)
T PF01216_consen 27 FPEYDGKD----RVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD 101 (383)
T ss_dssp SSS-SSS------CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT
T ss_pred CccCCCcc----ceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH
Confidence 56677762 278999999999999999999999999743 33333333 2345556554 79999999955
Q ss_pred hhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHhhcCCcccccccchhhhhhhhhcC
Q 010886 197 RLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTG 276 (498)
Q Consensus 197 ~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~~it~~~~~~~fl~~~~ 276 (498)
..||+++| +...++|.+|++|... +|.|.++++-+++|+...+. -| +.+|++...+..|-.-
T Consensus 102 ---~klAKKLg------v~E~~SiyVfkd~~~I-----EydG~~saDtLVeFl~dl~e-dP-VeiIn~~~e~~~Fe~i-- 163 (383)
T PF01216_consen 102 ---AKLAKKLG------VEEEGSIYVFKDGEVI-----EYDGERSADTLVEFLLDLLE-DP-VEIINNKHELKAFERI-- 163 (383)
T ss_dssp ---HHHHHHHT--------STTEEEEEETTEEE-----EE-S--SHHHHHHHHHHHHS-SS-EEEE-SHHHHHHHHH---
T ss_pred ---HHHHHhcC------ccccCcEEEEECCcEE-----EecCccCHHHHHHHHHHhcc-cc-hhhhcChhhhhhhhhc--
Confidence 45999999 8899999999999865 99999999999999999843 33 3346655445555542
Q ss_pred CCcEEEEEEecCCCC-CcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCC-CChh
Q 010886 277 PHKVKVIFFSKTGER-ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNS 354 (498)
Q Consensus 277 ~~~~~vl~f~~~~~~-~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~-~~~~ 354 (498)
+..+.|++|.+..+. ....+..+|..|..+++|..+. ...++++++++ ...|-+|+++.+.|+...|+ .+..
T Consensus 164 ed~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~ 237 (383)
T PF01216_consen 164 EDDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEE 237 (383)
T ss_dssp -SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HH
T ss_pred ccceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHH
Confidence 223777776644322 1223344888999999987764 35589999996 67899999999999988776 4678
Q ss_pred HHHHHHHhcccCCCCcccccchhhhccCCCCCcCCCCCCceeEEEEEeCCCchhhHHHHHHHHHHHHhhccccccccccc
Q 010886 355 RLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADT 434 (498)
Q Consensus 355 ~L~~fi~~~~~~~vp~lt~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~ 434 (498)
.|.+||++|+-|.+-+++..++++.=-.. . . + .+.|.++-..+++-.+..+.|+++|+
T Consensus 238 e~~~fi~~h~rptlrkl~~~~m~e~Wedd-~-~--g-----~hIvaFaee~dpdG~efleilk~va~------------- 295 (383)
T PF01216_consen 238 ELVEFIEEHKRPTLRKLRPEDMFETWEDD-I-D--G-----IHIVAFAEEEDPDGFEFLEILKQVAR------------- 295 (383)
T ss_dssp HHHHHHHHT-S-SEEE--GGGHHHHHHSS-S-S--S-----EEEEEE--TTSHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhchhHhhhCChhhhhhhhccc-C-C--C-----ceEEEEecCCCCchHHHHHHHHHHHH-------------
Confidence 89999999999999999999987733221 0 0 1 24443333455666677888888888
Q ss_pred CCCchHHHHhccCC-ceEEEEEeCccCchhhhhhhhhhhee
Q 010886 435 DQSLAPAAVAFRNK-RLTFAWLDGEAQDVSFIMLISLFYVD 474 (498)
Q Consensus 435 ~~~~~~~a~~~~~~-~~~f~wvd~~~q~~~~~~~~~~~~~~ 474 (498)
..... .+.++|||-..-+--+-+.=.+|-.+
T Consensus 296 ---------~nt~np~LsivwIDPD~fPllv~yWE~tF~Id 327 (383)
T PF01216_consen 296 ---------DNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID 327 (383)
T ss_dssp ---------HCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred ---------hcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence 33222 58999999766444222222344444
No 22
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-18 Score=181.82 Aligned_cols=102 Identities=16% Similarity=0.346 Sum_probs=90.8
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc--ceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~--i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|.+|..+||++++ +.++-+||+|||||||||++++|+|+++|+.+++. +.||++|++.|... ... |
T Consensus 368 VkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~-----~~~------~ 436 (493)
T KOG0190|consen 368 VKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP-----SLK------V 436 (493)
T ss_pred eEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc-----ccc------c
Confidence 8899999999988 88999999999999999999999999999999875 79999999977531 123 8
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
.+||||++|+.|.+ +++..|+|+|+.+++..|+.+.
T Consensus 437 ~~fPTI~~~pag~k--~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 437 DGFPTILFFPAGHK--SNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred cccceEEEecCCCC--CCCcccCCCcchHHHHhhhccC
Confidence 89999999999974 3578999999999999999876
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.75 E-value=1.4e-18 Score=146.42 Aligned_cols=98 Identities=17% Similarity=0.413 Sum_probs=87.3
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc---cceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|.+||.++|++.+.++ .++|.||||||++|+.+.|.|+++|+.+++ .+.+++|||+++. .+|++++ |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v 71 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR---ELCSEFQ------V 71 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh---hhHhhcC------C
Confidence 5789999999999665 599999999999999999999999999987 5899999999654 4899998 9
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
+++||+++|++|.. ...|.|.++.++|.+|+
T Consensus 72 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 72 RGYPTLLLFKDGEK----VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CcCCEEEEEeCCCe----eeEeeCCCCHHHHHhhC
Confidence 99999999998864 35799999999999885
No 24
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.74 E-value=3.7e-18 Score=144.10 Aligned_cols=100 Identities=19% Similarity=0.393 Sum_probs=87.4
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc--cceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~--~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|.+||.++|++.+ +++++++|.||+|||++|+++.|.|+++++.+++ .+.++++||+++. ++.+++ +
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~------~ 71 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND----VPSEFV------V 71 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh----hhhhcc------C
Confidence 6789999999988 5568999999999999999999999999999987 3799999999652 777777 8
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
.++||+++|++|.+. ....|.|.++.++|++|+
T Consensus 72 ~~~Pt~~~~~~~~~~--~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDKS--NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCcC--CceEccCCcCHHHHHhhC
Confidence 999999999998721 245899999999999985
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.74 E-value=2.1e-18 Score=148.59 Aligned_cols=100 Identities=22% Similarity=0.375 Sum_probs=86.8
Q ss_pred EEecCCCCcccc---cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 139 NVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 139 ~~Lt~~nF~~~v---~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
..++.++|++.+ +.+++|+|.||||||++|+.+.|.|+++++.+++. +.+++|||++++ .+|++++ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~---~l~~~~~------V 77 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER---RLARKLG------A 77 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH---HHHHHcC------C
Confidence 567888898654 36899999999999999999999999999999874 899999999554 4999999 9
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHH
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k 251 (498)
+++||+++|++|+. ...+.|.++.+.|++|+.+
T Consensus 78 ~~~Pt~~i~~~g~~----~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 78 HSVPAIVGIINGQV----TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ccCCEEEEEECCEE----EEEecCCCCHHHHHHHHhc
Confidence 99999999998865 3456799999999999865
No 26
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.74 E-value=2e-18 Score=165.83 Aligned_cols=104 Identities=21% Similarity=0.440 Sum_probs=91.7
Q ss_pred eeEEEecCCCCccccc-----CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCc
Q 010886 136 HAFNVVTSEDFPSIFH-----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ 210 (498)
Q Consensus 136 ~~V~~Lt~~nF~~~v~-----~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~ 210 (498)
+.|++||++||++.+. .+++|+|+||||||+||++++|.|+++|+++++.+.+++|||++++ .+|++++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~---~l~~~~~--- 103 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL---NLAKRFA--- 103 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH---HHHHHcC---
Confidence 3589999999999883 2589999999999999999999999999999998999999999664 4999999
Q ss_pred ccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 211 ~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
|+++||+++|.+|... ..+.|.++.++|.+|+.+.
T Consensus 104 ---I~~~PTl~~f~~G~~v----~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 104 ---IKGYPTLLLFDKGKMY----QYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred ---CCcCCEEEEEECCEEE----EeeCCCCCHHHHHHHHHHH
Confidence 9999999999998653 2345889999999999886
No 27
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.8e-18 Score=149.14 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=93.6
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
+..++..+|++.| +++.+++|+|||+|||+|+-|.|..++++.+++|.+++++||.+++.. |+.+|+ |+.
T Consensus 45 ~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e---la~~Y~------I~a 115 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE---LAEDYE------ISA 115 (150)
T ss_pred ccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc---hHhhcc------eee
Confidence 4668888898876 999999999999999999999999999999999999999999996654 999999 999
Q ss_pred eeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 217 ~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+||+++|++|++ ...+-|..+.+.|.+|+.|.
T Consensus 116 vPtvlvfknGe~----~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 116 VPTVLVFKNGEK----VDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred eeEEEEEECCEE----eeeecccCCHHHHHHHHHHH
Confidence 999999999986 35788999999999999987
No 28
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=4.1e-18 Score=176.22 Aligned_cols=69 Identities=28% Similarity=0.428 Sum_probs=64.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++||.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+.+.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 469999999999999999999999999999999987 267889999999999999999999999998754
No 29
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=6.6e-18 Score=174.80 Aligned_cols=69 Identities=20% Similarity=0.418 Sum_probs=64.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+.+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 469999999999999999999999999999999986 577899999999999999999999999998754
No 30
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.70 E-value=2.5e-17 Score=139.25 Aligned_cols=84 Identities=13% Similarity=0.275 Sum_probs=74.9
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcc-cchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKS 229 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~-~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~ 229 (498)
.++++++|.||||||++|+.+.|.|+++|+.+.+ +.+++||++ +++ .++++++ |+++||+++|.+| .
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~---~l~~~~~------V~~~PT~~lf~~g-~- 83 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKP---SLLSRYG------VVGFPTILLFNST-P- 83 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCH---HHHHhcC------CeecCEEEEEcCC-c-
Confidence 5689999999999999999999999999999976 678899988 554 4899999 9999999999998 3
Q ss_pred CCCcccccCCCCHHHHHHHH
Q 010886 230 SDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 230 ~~~~~~Y~G~r~~~~Iv~fv 249 (498)
...|.|.++.++|++|+
T Consensus 84 ---~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 ---RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ---eeEecCCCCHHHHHhhC
Confidence 35899999999999985
No 31
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.70 E-value=2.2e-17 Score=139.49 Aligned_cols=101 Identities=21% Similarity=0.347 Sum_probs=89.3
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhh--ccceEEEEEcccchhhhHHHHhCCCCccccee
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~--~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~ 215 (498)
|.+|++.+|++.++++++++|.||||||++|+++.|.++++++.+. +.+.++++||+++ ....+|++++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~------i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN------VK 74 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC------Cc
Confidence 6789999999999888899999999999999999999999999997 5578999999962 1345899998 99
Q ss_pred eeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 216 ~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
++||+++|++|.. ...|.|.++.+.+++|+
T Consensus 75 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF----VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe----eEEeCCCCCHHHHHhhC
Confidence 9999999999864 35899999999999885
No 32
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.70 E-value=3.2e-17 Score=136.94 Aligned_cols=93 Identities=14% Similarity=0.267 Sum_probs=81.8
Q ss_pred CCCcccc-cC-CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEE
Q 010886 144 EDFPSIF-HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (498)
Q Consensus 144 ~nF~~~v-~~-~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~ 221 (498)
++|++.| ++ +++++|.||||||++|+.+.|.++++++.+.+.+.+++|||++++ .+|++++ |+++||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~------i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP---QIAQQFG------VQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH---HHHHHcC------CCCCCEEE
Confidence 3677777 34 679999999999999999999999999999888899999999654 4999999 99999999
Q ss_pred EeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 222 AFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
+|.+|.. ...|.|.++.+.|.+|+
T Consensus 72 ~~~~g~~----~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 72 LFAAGQP----VDGFQGAQPEEQLRQML 95 (96)
T ss_pred EEeCCEE----eeeecCCCCHHHHHHHh
Confidence 9998865 34689999999999986
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.69 E-value=4e-17 Score=137.14 Aligned_cols=99 Identities=23% Similarity=0.403 Sum_probs=89.4
Q ss_pred ecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc--cceEEEEEcccchhhhHHHHhCCCCcccceeeee
Q 010886 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (498)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~--~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~P 218 (498)
|+.++|++.+.++++++|.||++||++|+++.|.|+++|+.+++ .+.++.+||++++ .+|++++ |+++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~------i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK---DLASRFG------VSGFP 71 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH---HHHHhCC------CCcCC
Confidence 57788999998999999999999999999999999999999987 5899999999664 4999999 99999
Q ss_pred EEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 219 Tl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
|+.+|.+|+. ...|.|.++.+.|.+|+.++
T Consensus 72 ~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 72 TIKFFPKGKK----PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EEEEecCCCc----ceeecCCCCHHHHHHHHHhc
Confidence 9999999864 35899999999999999875
No 34
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=7.3e-17 Score=167.92 Aligned_cols=228 Identities=14% Similarity=0.204 Sum_probs=141.7
Q ss_pred CCCCCCCCceeEEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc---ceEEEEEcccchhhhHH
Q 010886 127 LLDATDHSVHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHL 202 (498)
Q Consensus 127 ~y~~~~~~~~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---i~va~Vdc~~~~~~~~l 202 (498)
+|+.+|+ |++|+.++|+..| .+.+.+||+||++|||||.+++|.|+++|+.+.+. +.|++|||.+..+ ..|
T Consensus 34 Ly~~~D~----ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~l 108 (606)
T KOG1731|consen 34 LYSPDDP----IIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKL 108 (606)
T ss_pred ccCCCCC----eEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhh
Confidence 4554434 8999999999998 56679999999999999999999999999999764 7999999997655 459
Q ss_pred HHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHhh---------cCCcccccccchh---hhh
Q 010886 203 AERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL---------KLPRIFYYTKESM---GKN 270 (498)
Q Consensus 203 ~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~---------~~P~~~~it~~~~---~~~ 270 (498)
|++++ |++||||++|+.+.........+.|+....+|.+.+.+.+. .-|...-+++.+. +.+
T Consensus 109 CRef~------V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~ 182 (606)
T KOG1731|consen 109 CREFS------VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDE 182 (606)
T ss_pred HhhcC------CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhc
Confidence 99999 99999999999885432234567788878888888766432 1232222322221 222
Q ss_pred hhhhcCCCcEEEEEEecCCCCCcHHHHHHHHhcc--ccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeec
Q 010886 271 FLAKTGPHKVKVIFFSKTGERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYY 348 (498)
Q Consensus 271 fl~~~~~~~~~vl~f~~~~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~ 348 (498)
..+. ..+.+.+++-... ...-...+..+. ..+....+. +.+...+.+ ++.+..|..++|++++.+++.-.
T Consensus 183 ~~~~-~~~yvAiv~e~~~----s~lg~~~~l~~l~~~~v~vr~~~--d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~ 254 (606)
T KOG1731|consen 183 GIST-TANYVAIVFETEP----SDLGWANLLNDLPSKQVGVRARL--DTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPS 254 (606)
T ss_pred cccc-ccceeEEEEecCC----cccHHHHHHhhccCCCcceEEEe--cchhccccc-cCCCCchhhhhhcCCcccccccc
Confidence 2221 2234444432211 111122111111 222333322 222222344 67778999999998776654322
Q ss_pred CC---CChhHHHHHHHhc---ccCCCCcccc
Q 010886 349 GS---FNNSRLSEVMEQN---KLQELPQLRS 373 (498)
Q Consensus 349 g~---~~~~~L~~fi~~~---~~~~vp~lt~ 373 (498)
+. .-.+.|.++|... ..|.++..+.
T Consensus 255 ~~s~~~y~~~I~~~lg~~~~a~~pt~~p~~~ 285 (606)
T KOG1731|consen 255 SSSRSAYVKKIDDLLGDKNEASGPTLHPITA 285 (606)
T ss_pred cccHHHHHHHHHHHhcCccccCCCCcCcccc
Confidence 22 2235677777543 3455554443
No 35
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.69 E-value=6.3e-17 Score=136.67 Aligned_cols=100 Identities=20% Similarity=0.401 Sum_probs=87.7
Q ss_pred EEEecCCCCccccc-CCCcEEEEEecCCCCCCCCChHHHHHHHHHhh--ccceEEEEEccc-chhhhHHHHhCCCCcccc
Q 010886 138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGD-IRLATHLAERKPIGQIFF 213 (498)
Q Consensus 138 V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~--~~i~va~Vdc~~-~~~~~~l~~~~~~~~~~~ 213 (498)
|.+|++++|+..+. ++++++|.||++||++|+++.|.|+++++.++ +.+.++.+||++ +. .+|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~------ 72 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK---DLAKKYG------ 72 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch---hhHHhCC------
Confidence 57899999999885 45599999999999999999999999999997 458999999996 44 4999999
Q ss_pred eeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 214 I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
|+++||+++|.+|... ...|.|.++.++|++|+
T Consensus 73 i~~~P~~~~~~~~~~~---~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 73 VSGFPTLKFFPKGSTE---PVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCcCEEEEEeCCCCC---ccccCCccCHHHHHhhC
Confidence 9999999999988542 56899999999999985
No 36
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.68 E-value=4.8e-17 Score=170.97 Aligned_cols=105 Identities=11% Similarity=0.294 Sum_probs=90.7
Q ss_pred eEEEecCCCCccccc---CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCccc
Q 010886 137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF 212 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v~---~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~ 212 (498)
.|++||.+||++.|. .+++|||.||||||++|+.+.|.|+++|+++++. +.|++|||+.+.. ..++++++
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-~~~~~~~~----- 425 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-EFAKQELQ----- 425 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-HHHHHHcC-----
Confidence 389999999999884 7899999999999999999999999999999875 7999999996532 22346788
Q ss_pred ceeeeeEEEEeCCCCcCCCCccccc-CCCCHHHHHHHHHH
Q 010886 213 FRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFAT 251 (498)
Q Consensus 213 ~I~~~PTl~~f~~g~~~~~~~~~Y~-G~r~~~~Iv~fv~k 251 (498)
|++||||++|++|... +..|. |.|++++|+.|+..
T Consensus 426 -I~~~PTii~Fk~g~~~---~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 -LGSFPTILFFPKHSSR---PIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred -CCccceEEEEECCCCC---ceeCCCCCCCHHHHHHHHHh
Confidence 9999999999999643 56898 58999999999864
No 37
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.5e-17 Score=149.50 Aligned_cols=91 Identities=23% Similarity=0.318 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC------ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhh
Q 010886 13 YWAPLILFGLGLFYQLVVLPRSF------PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYA 83 (498)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~------~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~a 83 (498)
.+..+.|.++|+++++++.-.+. .-|||+||||+++++.+|||+|||+|++++||||++ ++++.|..|++|
T Consensus 69 ~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KA 148 (230)
T KOG0721|consen 69 TKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKA 148 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHH
Confidence 45667777777776666543322 679999999999999999999999999999999985 467789999999
Q ss_pred hhHcCChhhhhcccccCCch
Q 010886 84 YELLTDPLWKRNYDVYGIDE 103 (498)
Q Consensus 84 y~~L~d~~~r~~yd~~g~~~ 103 (498)
|+.|+|+..|++|+.||+.+
T Consensus 149 Y~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 149 YQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHHhcchhhHHHHHHhCCCC
Confidence 99999999999999999775
No 38
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.67 E-value=1e-16 Score=138.76 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=85.1
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc---cceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
|++|+.++|++.+ +++++|+|.||||||++|+.+.|.|+++|+.+++ .+.+++|||+.+. ...+|++++
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~------ 75 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFG------ 75 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCC------
Confidence 6889999999998 4457999999999999999999999999999864 4799999997542 245899998
Q ss_pred eeeeeEEEEeCCCCcCCCCcccccCC-CCHHHHH
Q 010886 214 RRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVT 246 (498)
Q Consensus 214 I~~~PTl~~f~~g~~~~~~~~~Y~G~-r~~~~Iv 246 (498)
|+++||+++|++|.........|+|+ |..+++.
T Consensus 76 i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 76 VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred CCCCCEEEEECCCCccCCCCCcccCCccCHHHHH
Confidence 99999999999997543444678887 7766663
No 39
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.7e-17 Score=157.75 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=94.7
Q ss_pred EEEecCCCCcccc---cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v---~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|.++|..||+..| +...++||.||||||++|++|.|..++++...+|.+++++|||++++. ++.+|| |
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~---vAaqfg------i 95 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM---VAAQFG------V 95 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh---HHHHhC------c
Confidence 7889999999988 446699999999999999999999999999999999999999996655 999999 9
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
++.||++.|++|.. ...|.|....+.|..|+.+.
T Consensus 96 qsIPtV~af~dGqp----VdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 96 QSIPTVYAFKDGQP----VDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred CcCCeEEEeeCCcC----ccccCCCCcHHHHHHHHHHh
Confidence 99999999999986 46899999999999999998
No 40
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.67 E-value=3.2e-17 Score=171.50 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=64.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++||.+|||+|||+||++||||+|+ +.++|++|++||++|+||++|+.||+||+.+.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 579999999999999999999999999999999985 57999999999999999999999999998754
No 41
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=3.8e-17 Score=169.28 Aligned_cols=70 Identities=31% Similarity=0.512 Sum_probs=64.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 469999999999999999999999999999999986 3678899999999999999999999999987643
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.67 E-value=1.9e-16 Score=134.53 Aligned_cols=94 Identities=16% Similarity=0.388 Sum_probs=80.9
Q ss_pred CCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc---cceEEEEEcccchhhhHHHHhCCCCcccceeeeeEE
Q 010886 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (498)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl 220 (498)
++|++. .++++++|.||||||++|+.+.|.|+++++.+++ .+.++.+||++++ .+|++++ |+++||+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------I~~~Pt~ 76 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS---SIASEFG------VRGYPTI 76 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH---hHHhhcC------CccccEE
Confidence 678874 5578999999999999999999999999999964 3789999999554 4899998 9999999
Q ss_pred EEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
++|.+|.. ..|.|.++.+.|.+|+++.
T Consensus 77 ~l~~~~~~-----~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 77 KLLKGDLA-----YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEEcCCCc-----eeecCCCCHHHHHHHHHhh
Confidence 99977643 3789999999999999763
No 43
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=4e-17 Score=170.11 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=63.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhhhhHcCChhhhhcccccCCc
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~ 102 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 479999999999999999999999999999999987 3578899999999999999999999999864
No 44
>PRK09381 trxA thioredoxin; Provisional
Probab=99.66 E-value=1.7e-16 Score=135.81 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=90.7
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
|.+++.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+.+.. ++++++ |++
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~ 75 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYG------IRG 75 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh---HHHhCC------CCc
Confidence 7889999999865 678899999999999999999999999999998889999999996554 888888 999
Q ss_pred eeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 217 ~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+||+++|++|.. ...+.|..+.+.|..|+.+.
T Consensus 76 ~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 76 IPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred CCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHh
Confidence 999999998865 23677999999999999876
No 45
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=6.2e-17 Score=167.61 Aligned_cols=69 Identities=30% Similarity=0.582 Sum_probs=64.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 469999999999999999999999999999999986 467889999999999999999999999998754
No 46
>PLN02309 5'-adenylylsulfate reductase
Probab=99.65 E-value=1.3e-16 Score=167.70 Aligned_cols=104 Identities=14% Similarity=0.404 Sum_probs=91.1
Q ss_pred eEEEecCCCCcccc---cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcc-cchhhhHHHH-hCCCCc
Q 010886 137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-DIRLATHLAE-RKPIGQ 210 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v---~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~-~~~~~~~l~~-~~~~~~ 210 (498)
.|++|+.+||++++ +.+++|||.||||||++|+.+.|.|+++|+.+.+. +.|++|||+ ++. .+|. +++
T Consensus 346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~--- 419 (457)
T PLN02309 346 NVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQ--- 419 (457)
T ss_pred CcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCC---
Confidence 48899999999987 57999999999999999999999999999999876 899999999 544 3776 578
Q ss_pred ccceeeeeEEEEeCCCCcCCCCcccccC-CCCHHHHHHHHHHH
Q 010886 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA 252 (498)
Q Consensus 211 ~~~I~~~PTl~~f~~g~~~~~~~~~Y~G-~r~~~~Iv~fv~k~ 252 (498)
|++||||++|++|... +..|.| .|++++|++|+...
T Consensus 420 ---I~~~PTil~f~~g~~~---~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 ---LGSFPTILLFPKNSSR---PIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ---CceeeEEEEEeCCCCC---eeecCCCCcCHHHHHHHHHHh
Confidence 9999999999998653 568985 79999999999763
No 47
>PHA02278 thioredoxin-like protein
Probab=99.65 E-value=1.1e-16 Score=135.76 Aligned_cols=96 Identities=9% Similarity=0.118 Sum_probs=81.3
Q ss_pred CCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeEEE
Q 010886 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (498)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PTl~ 221 (498)
.++|++.++++++++|.|||||||+|+.++|.++++++.+.+.+.+.+||+++++. ...++++++ |+++||++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~------I~~iPT~i 77 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD------IMSTPVLI 77 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC------CccccEEE
Confidence 35677888899999999999999999999999999998876667899999996521 234899998 99999999
Q ss_pred EeCCCCcCCCCcccccCCCCHHHHHHH
Q 010886 222 AFPPGCKSSDCMTRFEGELSVDAVTDW 248 (498)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~r~~~~Iv~f 248 (498)
+|++|+. .....|..+.+.|.++
T Consensus 78 ~fk~G~~----v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQL----VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEE----EEEEeCCCCHHHHHhh
Confidence 9999976 3467798888888776
No 48
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.65 E-value=5.4e-15 Score=142.30 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=124.3
Q ss_pred CCcEEEEEec---CCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCc
Q 010886 153 SKPWLIQVYS---DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (498)
Q Consensus 153 ~~~~lV~FYa---pwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~ 228 (498)
+...++.|++ |||++|+.+.|.++++|+.+.+. +.+..+|.++++ +++++|+ |.++||+++|++|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~---~l~~~~~------V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK---EEAEKYG------VERVPTTIILEEGKD 89 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH---HHHHHcC------CCccCEEEEEeCCee
Confidence 3455777998 99999999999999999998542 345556655544 4999999 999999999999865
Q ss_pred CCCCcccccCCCCHHHHHHHHHHHhhcCCcccccccchhhhhhhhhcCCCcEEEE-EEecCC-CC--CcHHHHHHHHhcc
Q 010886 229 SSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG-ER--ASPFVRQISRNYW 304 (498)
Q Consensus 229 ~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~~it~~~~~~~fl~~~~~~~~~vl-~f~~~~-~~--~~~~~~~~A~~~~ 304 (498)
. ...|.|..+.+.+.+|+...+..-+....++. +..+. ++.. ++.+.|+ |+++.| .| ..+.+..++...
T Consensus 90 ~---~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~-~~~~~-l~~~-~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~- 162 (215)
T TIGR02187 90 G---GIRYTGIPAGYEFAALIEDIVRVSQGEPGLSE-KTVEL-LQSL-DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN- 162 (215)
T ss_pred e---EEEEeecCCHHHHHHHHHHHHHhcCCCCCCCH-HHHHH-HHhc-CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-
Confidence 3 24788999999999999876321111112322 11222 2222 2224444 444432 22 224444455442
Q ss_pred ccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 010886 305 AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 305 ~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
+.+.+..++.. ..++++++|+|.+.||+++++++. .+.|..+.+.|.+|+..
T Consensus 163 ~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 DKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred CceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 34555555422 247899999999999999986532 27888888899999864
No 49
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1e-16 Score=166.61 Aligned_cols=70 Identities=31% Similarity=0.529 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 469999999999999999999999999999999986 4778999999999999999999999999987643
No 50
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.64 E-value=1.7e-16 Score=132.12 Aligned_cols=98 Identities=22% Similarity=0.453 Sum_probs=86.9
Q ss_pred EecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHh--hccceEEEEEcccchhhhHHHHhCCCCcccceeee
Q 010886 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (498)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l--~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~ 217 (498)
+||.++|.+.+.+.++++|.||++||++|+++.|.|+++++.+ .+.+.++.|||+++. .+|++++ |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN---DLCSEYG------VRGY 72 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH---HHHHhCC------CCCC
Confidence 5788899999988889999999999999999999999999999 567899999999654 4999999 9999
Q ss_pred eEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
||+++|.+|... ...|.|.+++++|.+|+
T Consensus 73 Pt~~~~~~~~~~---~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGSKE---PVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCCcc---cccCCCCcCHHHHHhhC
Confidence 999999988322 56899999999999884
No 51
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.2e-16 Score=165.65 Aligned_cols=69 Identities=29% Similarity=0.508 Sum_probs=64.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+.+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 469999999999999999999999999999999986 467899999999999999999999999998754
No 52
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.3e-16 Score=165.79 Aligned_cols=69 Identities=25% Similarity=0.467 Sum_probs=64.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|.+|++||++|+||.+|+.||+||+++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 569999999999999999999999999999999986 578899999999999999999999999998754
No 53
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.6e-16 Score=164.60 Aligned_cols=69 Identities=29% Similarity=0.583 Sum_probs=63.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC----hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~----~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.++|++|++||++|+||++|+.||+||..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 4699999999999999999999999999999999863 46789999999999999999999999997654
No 54
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.5e-16 Score=164.37 Aligned_cols=69 Identities=26% Similarity=0.426 Sum_probs=64.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+|+++||||+|++ +.++|++|++||++|+||++|..||+||+.+.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 3699999999999999999999999999999999863 56789999999999999999999999998754
No 55
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=1.9e-16 Score=164.41 Aligned_cols=70 Identities=29% Similarity=0.487 Sum_probs=65.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
..|||++|||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||++|+.||+||+++..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 369999999999999999999999999999999986 5778999999999999999999999999987643
No 56
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.5e-16 Score=163.49 Aligned_cols=66 Identities=29% Similarity=0.430 Sum_probs=62.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC--hHHHHHHHHhhhhHcCChhhhhcccccCCc
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~--~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~ 102 (498)
.|||++|||+++|+.+|||+|||+||++||||+|+. +.++|++|++||++|+||++|+.||+||+.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 699999999999999999999999999999999874 667899999999999999999999999975
No 57
>PRK10996 thioredoxin 2; Provisional
Probab=99.63 E-value=3.9e-16 Score=139.92 Aligned_cols=102 Identities=21% Similarity=0.347 Sum_probs=92.3
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeee
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~ 217 (498)
++.++.++|++.++++++++|.||++||++|+++.|.++++++.+.+.+.+++||+++++ .++++++ |+++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~------V~~~ 107 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER---ELSARFR------IRSI 107 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH---HHHHhcC------CCcc
Confidence 577899999999988999999999999999999999999999999888999999999665 4999999 9999
Q ss_pred eEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
||+++|++|+. ...+.|..+.+.|.+|+.+.
T Consensus 108 Ptlii~~~G~~----v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 108 PTIMIFKNGQV----VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CEEEEEECCEE----EEEEcCCCCHHHHHHHHHHh
Confidence 99999998875 35678999999999999865
No 58
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.2e-16 Score=158.54 Aligned_cols=69 Identities=29% Similarity=0.527 Sum_probs=64.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++||.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||++|+.||+||.++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~ 73 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAA 73 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccc
Confidence 469999999999999999999999999999999985 577899999999999999999999999998743
No 59
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.4e-16 Score=163.97 Aligned_cols=69 Identities=26% Similarity=0.516 Sum_probs=64.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||+.+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 477899999999999999999999999998754
No 60
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2.3e-16 Score=164.31 Aligned_cols=69 Identities=28% Similarity=0.536 Sum_probs=64.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 4699999999999999999999999999999999873 56789999999999999999999999998754
No 61
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2.8e-16 Score=163.45 Aligned_cols=69 Identities=28% Similarity=0.547 Sum_probs=64.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 469999999999999999999999999999999987 356789999999999999999999999998764
No 62
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2.7e-16 Score=162.81 Aligned_cols=69 Identities=29% Similarity=0.487 Sum_probs=64.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.++|.+|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 4799999999999999999999999999999999873 56789999999999999999999999998764
No 63
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2.9e-16 Score=162.70 Aligned_cols=69 Identities=25% Similarity=0.450 Sum_probs=64.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.++|++|++||++|+||.+|+.||+||+.+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 4799999999999999999999999999999999873 56789999999999999999999999998754
No 64
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.6e-16 Score=150.30 Aligned_cols=70 Identities=30% Similarity=0.501 Sum_probs=64.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
..|+|++||++++|+.++||||||+|+++||||++++ +.++|++|++||++|+||.+|..||+||+.+..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 4569999999999999999999999999999998763 788999999999999999999999999988754
No 65
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.61 E-value=5.8e-16 Score=131.52 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=79.4
Q ss_pred CCCCccccc--CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEE
Q 010886 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (498)
Q Consensus 143 ~~nF~~~v~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl 220 (498)
.++|++.+. .+++++|+|||+||++|+.+.|.++++|+++ +.+.+++||++++.....++++++ |+++||+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~------V~~~Pt~ 75 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREK------IIEVPHF 75 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcC------CCcCCEE
Confidence 456777773 3899999999999999999999999999999 568999999997754456999998 9999999
Q ss_pred EEeCCCCcCCCCcccccCCCCHHHHHHHHHH
Q 010886 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k 251 (498)
++|++|+. ...+.|. ..+.|.+-+.+
T Consensus 76 ~~~~~G~~----v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 76 LFYKDGEK----IHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred EEEeCCeE----EEEEeCC-CHHHHHHHHHh
Confidence 99999875 3567774 45666665543
No 66
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=3.8e-16 Score=162.91 Aligned_cols=68 Identities=31% Similarity=0.539 Sum_probs=63.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
.|||++|||+++|+.+|||+|||+||++||||+|++ +.++|++|++||++|+||++|+.||+||+.+.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 389999999999999999999999999999999873 56789999999999999999999999998653
No 67
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.61 E-value=6.1e-16 Score=140.17 Aligned_cols=89 Identities=16% Similarity=0.370 Sum_probs=75.5
Q ss_pred eEEEecCCCCcccc--cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 137 AFNVVTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
.|.+++.++|++.+ +.+++|+|.||||||++|+.+.|.|+++|+++++. +.+++|||++++ ++|+++++...|.
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~la~~~~V~~~~~ 105 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---NVAEKFRVSTSPL 105 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---HHHHHcCceecCC
Confidence 37889999999988 34579999999999999999999999999999754 899999999665 4999999443344
Q ss_pred eeeeeEEEEeCCCCc
Q 010886 214 RRGLPSLVAFPPGCK 228 (498)
Q Consensus 214 I~~~PTl~~f~~g~~ 228 (498)
|+++||+++|++|+.
T Consensus 106 v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 106 SKQLPTIILFQGGKE 120 (152)
T ss_pred cCCCCEEEEEECCEE
Confidence 455999999999976
No 68
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=6.3e-16 Score=161.53 Aligned_cols=70 Identities=24% Similarity=0.466 Sum_probs=64.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
..|||++|||+++|+.+|||+|||+|+++||||++++ +.++|++|++||++|+||.+|+.||+||+.+..
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 3699999999999999999999999999999999863 568899999999999999999999999987543
No 69
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=5.9e-16 Score=161.19 Aligned_cols=69 Identities=23% Similarity=0.468 Sum_probs=63.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhhhhHcCChhhhhcccc----cCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDV----YGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~ay~~L~d~~~r~~yd~----~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+ ||+.+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 366889999999999999999999999 987654
No 70
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-16 Score=161.69 Aligned_cols=68 Identities=26% Similarity=0.438 Sum_probs=63.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC----ChHHHHHHHHhhhhHcCChhhhhcccccCCch
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~----~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~ 103 (498)
.+.||++|||.++|+..+||++||+||++||||+|| .+.++|+.|+.||+|||||+.|..||.+-++.
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqi 78 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQI 78 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHH
Confidence 678999999999999999999999999999999988 36778999999999999999999999886543
No 71
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=8.3e-16 Score=159.59 Aligned_cols=69 Identities=30% Similarity=0.554 Sum_probs=64.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|++ +.++|.+|++||++|+||.+|+.||+||+.+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 4699999999999999999999999999999999863 56789999999999999999999999998754
No 72
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.59 E-value=7.3e-16 Score=119.25 Aligned_cols=60 Identities=35% Similarity=0.697 Sum_probs=56.6
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCChH----HHHHHHHhhhhHcCChhhhhccc
Q 010886 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNYD 97 (498)
Q Consensus 38 d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~~----~~f~~i~~ay~~L~d~~~r~~yd 97 (498)
|||++|||+++++.++||++|+++++++|||++++.. +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999977544 78999999999999999999997
No 73
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.58 E-value=6e-16 Score=132.78 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCCccccc--CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEE
Q 010886 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (498)
Q Consensus 144 ~nF~~~v~--~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~ 221 (498)
++|++.+. ++++++|.|||+||++|+.+.|.++++|.++.+.+.+++||+++++. ++++++ |++.||++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~---la~~~~------V~~iPTf~ 73 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD---FNKMYE------LYDPPTVM 73 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH---HHHHcC------CCCCCEEE
Confidence 45667773 68899999999999999999999999999999888999999997654 999999 99999999
Q ss_pred EeCCCCc
Q 010886 222 AFPPGCK 228 (498)
Q Consensus 222 ~f~~g~~ 228 (498)
+|++|+.
T Consensus 74 ~fk~G~~ 80 (114)
T cd02954 74 FFFRNKH 80 (114)
T ss_pred EEECCEE
Confidence 9999976
No 74
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.58 E-value=1.9e-15 Score=128.11 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=80.7
Q ss_pred ecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccceeeeeE
Q 010886 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (498)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PT 219 (498)
-|.++|+..++++++++|.||||||++|+.+.|.++++++.+++. +.++.+|++ +. .++++++ |+++||
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~---~~~~~~~------v~~~Pt 74 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI---DTLKRYR------GKCEPT 74 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH---HHHHHcC------CCcCcE
Confidence 466788898889999999999999999999999999999999854 689999999 33 3889998 999999
Q ss_pred EEEeCCCCcCCCCcccccCCCCHHHHHHHHHH
Q 010886 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 220 l~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k 251 (498)
+++|++|+.. ....| .+.+.|.+++.+
T Consensus 75 ~~~~~~g~~~----~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 75 FLFYKNGELV----AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEECCEEE----EEEec-CChHHHHHHHhh
Confidence 9999998752 24445 478888888754
No 75
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.57 E-value=3.9e-15 Score=126.91 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=85.2
Q ss_pred EEecCCCCcccccCCCcEEEEEecCC--CCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 139 NVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 139 ~~Lt~~nF~~~v~~~~~~lV~FYapw--C~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
-++|..||++.++.+...+|.||++| |++|..++|.++++|+++.+.+.+++||+++++ .++.+|+ |++
T Consensus 13 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~la~~f~------V~s 83 (111)
T cd02965 13 PRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---ALAARFG------VLR 83 (111)
T ss_pred cccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---HHHHHcC------CCc
Confidence 46899999999999999999999997 999999999999999999999999999999665 4999999 999
Q ss_pred eeEEEEeCCCCcCCCCcccccCCCCHHHHH
Q 010886 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (498)
Q Consensus 217 ~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv 246 (498)
+||+++|++|+. .....|..+.+.+.
T Consensus 84 IPTli~fkdGk~----v~~~~G~~~~~e~~ 109 (111)
T cd02965 84 TPALLFFRDGRY----VGVLAGIRDWDEYV 109 (111)
T ss_pred CCEEEEEECCEE----EEEEeCccCHHHHh
Confidence 999999999976 34667888877664
No 76
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.9e-15 Score=156.41 Aligned_cols=68 Identities=31% Similarity=0.557 Sum_probs=63.5
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC----hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~----~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
.|||++|||+++|+.+|||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||+||+.+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 699999999999999999999999999999999863 45789999999999999999999999998754
No 77
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.6e-15 Score=157.25 Aligned_cols=68 Identities=26% Similarity=0.462 Sum_probs=63.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
.|||++|||+++||.+|||+|||+|+++||||+++ .+.++|.+|++||++|+|+.+|..||+||+++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 69999999999999999999999999999999886 467789999999999999999999999998754
No 78
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.9e-15 Score=150.69 Aligned_cols=68 Identities=28% Similarity=0.601 Sum_probs=63.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCch
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~ 103 (498)
..|||++|||+++|+..|||+||++||++||||.|. ++.++|++|.+|||+|+|+++|..||++|..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 449999999999999999999999999999999765 68889999999999999999999999998775
No 79
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.56 E-value=2.4e-15 Score=155.30 Aligned_cols=68 Identities=31% Similarity=0.543 Sum_probs=63.6
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 38 d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
|||++|||+++|+.+|||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||+||+.+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 7999999999999999999999999999999985 4678999999999999999999999999987643
No 80
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.56 E-value=6.1e-15 Score=123.29 Aligned_cols=98 Identities=19% Similarity=0.308 Sum_probs=84.7
Q ss_pred cCCCCcccccC-CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEE
Q 010886 142 TSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (498)
Q Consensus 142 t~~nF~~~v~~-~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl 220 (498)
+.++|.+.+.+ .++++|.||++||++|+.+.|.++++++.+.+.+.++.|||++++ .++++++ |+++||+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~~P~~ 72 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP---DIAAKYG------IRSIPTL 72 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcC------CCcCCEE
Confidence 45677777744 569999999999999999999999999999888999999999665 4899998 9999999
Q ss_pred EEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
++|++|+. ...+.|..+.+.|.+|+.+.
T Consensus 73 ~~~~~g~~----~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 73 LLFKNGKE----VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred EEEeCCcE----eeeecCCCCHHHHHHHHHhh
Confidence 99988865 24677999999999999765
No 81
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.3e-15 Score=155.15 Aligned_cols=69 Identities=26% Similarity=0.509 Sum_probs=64.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+|+++||||+|+ .+.++|.+|++||++|+||.+|+.||+||+.+.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 369999999999999999999999999999999986 577899999999999999999999999998754
No 82
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.55 E-value=3e-15 Score=164.12 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=65.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
..+||++|||+++|+..+||+|||+||++||||+++ .+.++|+.|+.||++|+||.+|+.||+||..+..
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 579999999999999999999999999999999987 3677899999999999999999999999988643
No 83
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=2.8e-15 Score=156.31 Aligned_cols=69 Identities=25% Similarity=0.495 Sum_probs=64.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+.+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 469999999999999999999999999999999986 356789999999999999999999999998754
No 84
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.2e-15 Score=155.18 Aligned_cols=67 Identities=27% Similarity=0.517 Sum_probs=63.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCch
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~ 103 (498)
.|||++|||+++|+.++||+|||+|+++||||+++ .+.++|.+|++||++|+||.+|+.||+||+.+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 49999999999999999999999999999999986 47789999999999999999999999999875
No 85
>PTZ00102 disulphide isomerase; Provisional
Probab=99.55 E-value=8e-15 Score=157.29 Aligned_cols=105 Identities=14% Similarity=0.257 Sum_probs=93.2
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc--cceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~--~i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
.|..|+.++|++.| +++++++|.||||||+||+.++|.|+++|+.+++ .+.++++||+.+.. +|++++
T Consensus 358 ~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~---~~~~~~------ 428 (477)
T PTZ00102 358 PVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET---PLEEFS------ 428 (477)
T ss_pred CeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc---chhcCC------
Confidence 37889999999986 7889999999999999999999999999999875 47899999997654 788888
Q ss_pred eeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHh
Q 010886 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (498)
Q Consensus 214 I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~ 253 (498)
|+++||+++|++|+.. +..|.|.++.++|.+|+.+.+
T Consensus 429 v~~~Pt~~~~~~~~~~---~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 429 WSAFPTILFVKAGERT---PIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred CcccCeEEEEECCCcc---eeEecCcCCHHHHHHHHHHcC
Confidence 9999999999998653 457999999999999999883
No 86
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3e-15 Score=148.00 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=64.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|||++|||+..++..+|++|||+.+++|||||||+ +.++|+.+.+||++|+|+.+|..||.+|..+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999984 67789999999999999999999999997764
No 87
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.7e-15 Score=138.33 Aligned_cols=68 Identities=24% Similarity=0.450 Sum_probs=63.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC-----ChHHHHHHHHhhhhHcCChhhhhcccccCCch
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI-----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~-----~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~ 103 (498)
..|+|++|||.++|+..+||+||++|+++||||+++ .+.++|+.++++|++|+|.++|+.||.-|...
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 679999999999999999999999999999999985 47788999999999999999999999988664
No 88
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-14 Score=151.45 Aligned_cols=105 Identities=23% Similarity=0.471 Sum_probs=92.9
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhh--ccceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~--~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
+|.+|+..||+..+ ..+..|+|.||+|||+||+.++|+|+++|..++ +.+.++++||+ ....+|++++
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~---~~~~~~~~~~------ 215 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT---VHKSLASRLE------ 215 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc---hHHHHhhhhc------
Confidence 37899999999877 778899999999999999999999999999996 45899999999 4455999999
Q ss_pred eeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHh
Q 010886 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (498)
Q Consensus 214 I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~ 253 (498)
|++|||+++|++|.. ....|.|.|+.++|++|+.+..
T Consensus 216 v~~~Pt~~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE---DIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred ccCCceEEEecCCCc---ccccccccccHHHHHHHHHhhc
Confidence 999999999999875 1346789999999999999873
No 89
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.53 E-value=5.6e-15 Score=127.60 Aligned_cols=81 Identities=15% Similarity=0.225 Sum_probs=72.5
Q ss_pred eEEEecCCCCcccccCC---CcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 137 AFNVVTSEDFPSIFHDS---KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~---~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
.|.++++++|.+.|.+. .+++|.||+|||++|+.+.|.++++|+.+.+ +++++||++++ .++++++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~------ 73 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLD------ 73 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcC------
Confidence 47889999999988444 8999999999999999999999999999865 78999999955 5999999
Q ss_pred eeeeeEEEEeCCCCc
Q 010886 214 RRGLPSLVAFPPGCK 228 (498)
Q Consensus 214 I~~~PTl~~f~~g~~ 228 (498)
|+++||+++|++|+.
T Consensus 74 i~~~Pt~~~f~~G~~ 88 (113)
T cd02957 74 IKVLPTLLVYKNGEL 88 (113)
T ss_pred CCcCCEEEEEECCEE
Confidence 999999999999975
No 90
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.53 E-value=1.2e-14 Score=123.24 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCCcccccCCCcEEEEEecCCCCCCCCChHHH---HHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeE
Q 010886 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPS 219 (498)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PT 219 (498)
++|++.++++++++|.||+|||++|+.+.|.+ +++++.+.+.+.++.||++++.. ...++++++ |+++||
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~------i~~~Pt 75 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG------VFGPPT 75 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC------CCCCCE
Confidence 45677788899999999999999999999999 68888888778999999985422 356899998 999999
Q ss_pred EEEeCC--CCcCCCCcccccCCCCHHHHHHHH
Q 010886 220 LVAFPP--GCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 220 l~~f~~--g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
+++|.+ |.. ...+.|.++.++|.+++
T Consensus 76 i~~~~~~~g~~----~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 76 YLFYGPGGEPE----PLRLPGFLTADEFLEAL 103 (104)
T ss_pred EEEECCCCCCC----CcccccccCHHHHHHHh
Confidence 999994 543 45788999999998886
No 91
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.53 E-value=5.8e-15 Score=149.31 Aligned_cols=66 Identities=24% Similarity=0.471 Sum_probs=62.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCc
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~ 102 (498)
.|||++|||+++|+.+|||+|||+|+++||||+++ .+.++|.+|++||++|+||.+|..||.||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 69999999999999999999999999999999885 5778999999999999999999999999854
No 92
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.9e-15 Score=150.24 Aligned_cols=70 Identities=29% Similarity=0.475 Sum_probs=64.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC------ChHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~------~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
+.|+|.+|+|+++|+.+|||+|||++++.+||||.. .+.+.|+.|..|||+|+||.+|..||.||++|..
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 569999999999999999999999999999999754 2566799999999999999999999999998865
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.51 E-value=1.7e-14 Score=141.94 Aligned_cols=67 Identities=30% Similarity=0.495 Sum_probs=60.3
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC------ChHHHHHHHHhhhhHcCChhhhhccccc
Q 010886 33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVY 99 (498)
Q Consensus 33 ~~~~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~------~~~~~f~~i~~ay~~L~d~~~r~~yd~~ 99 (498)
.+..+|||+||||.|+|+..||.||||++|.+||||.-+ .+..+|..|..|=|||+||++|+.||.-
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 345899999999999999999999999999999999654 2555699999999999999999999973
No 94
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.50 E-value=3.8e-14 Score=122.44 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=73.5
Q ss_pred EEEecC-CCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 138 FNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 138 V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
+.++++ ++|.+.++++++++|.||+|||++|+.+.|.++++++++.+ +++.+||+++++ .++++++ |++
T Consensus 6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~---~l~~~~~------v~~ 75 (113)
T cd02989 6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAP---FLVEKLN------IKV 75 (113)
T ss_pred eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCH---HHHHHCC------Ccc
Confidence 677887 88999998899999999999999999999999999998755 799999999665 4999999 999
Q ss_pred eeEEEEeCCCCc
Q 010886 217 LPSLVAFPPGCK 228 (498)
Q Consensus 217 ~PTl~~f~~g~~ 228 (498)
+||+++|++|..
T Consensus 76 vPt~l~fk~G~~ 87 (113)
T cd02989 76 LPTVILFKNGKT 87 (113)
T ss_pred CCEEEEEECCEE
Confidence 999999999965
No 95
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.48 E-value=5.5e-13 Score=124.24 Aligned_cols=152 Identities=18% Similarity=0.295 Sum_probs=120.3
Q ss_pred cHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCC-CChhHHHHHHHhcccCCCCcc
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQELPQL 371 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~-~~~~~L~~fi~~~~~~~vp~l 371 (498)
...+..+|..+++.+.|+.+. +.+++++++++. |+|++|++++++++.|.|. ++.+.|.+||..+++|+++++
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 345566888888888999885 456899999987 9999999988889999998 899999999999999999999
Q ss_pred cccchhhhccCCCCCcCCCCCCceeEEEEEeCC-CchhhHHHHHHHHHHHHhhcccccccccccCCCchHHHHhccCCce
Q 010886 372 RSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRL 450 (498)
Q Consensus 372 t~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~-~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 450 (498)
+..++....-. ++ .+.++++.+ +.+..+.+.+.++++|+ +++++ +
T Consensus 83 t~~n~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~l~~~a~----------------------~~~~~-~ 128 (184)
T PF13848_consen 83 TPENFEKLFSS-------PK----PPVLILFDNKDNESTEAFKKELQDIAK----------------------KFKGK-I 128 (184)
T ss_dssp STTHHHHHHST-------SS----EEEEEEEETTTHHHHHHHHHHHHHHHH----------------------CTTTT-S
T ss_pred chhhHHHHhcC-------CC----ceEEEEEEcCCchhHHHHHHHHHHHHH----------------------hcCCe-E
Confidence 99987552211 11 234555543 44567888888888888 77765 9
Q ss_pred EEEEEeCccCchhhhhhhhhhheeeeccC--Cceeeeeeccccee
Q 010886 451 TFAWLDGEAQDVSFIMLISLFYVDFFLHS--DLFVLWLLFPSMSM 493 (498)
Q Consensus 451 ~f~wvd~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 493 (498)
.|+|+|++..++ ++.+|... ++|.++|+++....
T Consensus 129 ~f~~~d~~~~~~---------~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 129 NFVYVDADDFPR---------LLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp EEEEEETTTTHH---------HHHHTTTTTSSSSEEEEEETTTSE
T ss_pred EEEEeehHHhHH---------HHHHcCCCCccCCEEEEEECCCCc
Confidence 999999997777 66666665 99999999987654
No 96
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.9e-14 Score=133.47 Aligned_cols=66 Identities=26% Similarity=0.416 Sum_probs=60.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhccccc
Q 010886 34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVY 99 (498)
Q Consensus 34 ~~~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~ 99 (498)
...+|.|++|||.++++..||.+|||+||+++|||+++ ++.+.|+.|..|||+|.|.+.|..||-.
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 44789999999999999999999999999999999876 4556699999999999999999999965
No 97
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.48 E-value=1e-13 Score=124.74 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=84.5
Q ss_pred CCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEE
Q 010886 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (498)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~ 222 (498)
...|+..+.++++++|.|||+||++|+.+.|.++++++.+.+.+.|..||++.+. ...++++|+ |+++||+++
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~------V~~iPt~v~ 82 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYR------VDGIPHFVF 82 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcC------CCCCCEEEE
Confidence 3557777788999999999999999999999999999999877888888887542 235888888 999999999
Q ss_pred eC-CCCcCCCCcccccCCCCHHHHHHHHHHHhhc
Q 010886 223 FP-PGCKSSDCMTRFEGELSVDAVTDWFATAILK 255 (498)
Q Consensus 223 f~-~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~ 255 (498)
|. +|.. ...+.|..+.+.|.+++.+.+..
T Consensus 83 ~~~~G~~----v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 83 LDREGNE----EGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred ECCCCCE----EEEEeCCCCHHHHHHHHHHHHcC
Confidence 95 5654 34677999999999999886443
No 98
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.46 E-value=4.5e-14 Score=117.87 Aligned_cols=93 Identities=15% Similarity=0.251 Sum_probs=75.3
Q ss_pred CCCCcccccCC--CcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEE
Q 010886 143 SEDFPSIFHDS--KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (498)
Q Consensus 143 ~~nF~~~v~~~--~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl 220 (498)
.++|++.+.+. ++++|.||+|||++|+++.|.++++++.+.+.+.+.+||++++. .++++++ |+++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~---~~~~~~~------i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP---EISEKFE------ITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH---HHHHhcC------CccccEE
Confidence 35677777544 99999999999999999999999999998777899999999554 4899999 9999999
Q ss_pred EEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
++|.+|... ..+.| .+.++|.+.+
T Consensus 73 ~~~~~g~~~----~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 73 VFFRNGTIV----DRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEECCEEE----EEEeC-CCHHHHHHhh
Confidence 999988652 23445 4566776654
No 99
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.46 E-value=8.2e-14 Score=106.16 Aligned_cols=55 Identities=31% Similarity=0.585 Sum_probs=51.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC----hHHHHHHHHhhhhHcCChh
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPL 91 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~----~~~~f~~i~~ay~~L~d~~ 91 (498)
.|||++|||+++++.++||++||++++++|||++++ +.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999874 6778999999999999985
No 100
>PHA03102 Small T antigen; Reviewed
Probab=99.46 E-value=6e-14 Score=126.03 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=63.2
Q ss_pred cccccccCCCCCC--CHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcCChhhhhcccccCCchhh
Q 010886 37 PSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (498)
Q Consensus 37 ~d~y~ilgv~~~a--~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~~ 105 (498)
+..|++|||+++| |.++||+|||++++++|||++ ++.++|++|++||++|+|+.+|..||.+|.++..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 4579999999999 999999999999999999996 5778999999999999999999999999988643
No 101
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.45 E-value=1.1e-13 Score=103.50 Aligned_cols=52 Identities=37% Similarity=0.636 Sum_probs=49.2
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---hHHHHHHHHhhhhHcCC
Q 010886 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTD 89 (498)
Q Consensus 38 d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~---~~~~f~~i~~ay~~L~d 89 (498)
|||++|||+++++.++||++||+++++||||++++ +.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999875 77889999999999986
No 102
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.45 E-value=1.1e-13 Score=147.36 Aligned_cols=103 Identities=16% Similarity=0.318 Sum_probs=90.6
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc---cceEEEEEcccchhhhHHHHhCCCCccc
Q 010886 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF 212 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~i~va~Vdc~~~~~~~~l~~~~~~~~~~ 212 (498)
.|..|+..+|++.+ ++++.++|.||||||++|+.+.|.|+++|+.+.+ .+.++++||+.+. ++. ++
T Consensus 347 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~----- 416 (462)
T TIGR01130 347 PVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FE----- 416 (462)
T ss_pred ccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CC-----
Confidence 47889999999987 7789999999999999999999999999999988 5899999999664 333 66
Q ss_pred ceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 213 ~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
|+++||+++|++|... .+..|.|.++.++|++|+.+.
T Consensus 417 -i~~~Pt~~~~~~~~~~--~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 417 -VEGFPTIKFVPAGKKS--EPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred -ccccCEEEEEeCCCCc--CceEecCcCCHHHHHHHHHhc
Confidence 9999999999998652 256899999999999999887
No 103
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.6e-13 Score=115.49 Aligned_cols=85 Identities=13% Similarity=0.205 Sum_probs=71.0
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~ 230 (498)
..++.++|.|||+|||+|+.++|.++++|.++.+ +.|.+||+++ ..++|++++ |+..||+++|++|+.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~------V~~~PTf~f~k~g~~-- 86 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFN------VKAMPTFVFYKGGEE-- 86 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcC------ceEeeEEEEEECCEE--
Confidence 4469999999999999999999999999999999 9999999997 355999999 999999999999976
Q ss_pred CCcccccCCCCHHHHHHHHH
Q 010886 231 DCMTRFEGELSVDAVTDWFA 250 (498)
Q Consensus 231 ~~~~~Y~G~r~~~~Iv~fv~ 250 (498)
...+.|.-.. .+.+.+.
T Consensus 87 --~~~~vGa~~~-~l~~~i~ 103 (106)
T KOG0907|consen 87 --VDEVVGANKA-ELEKKIA 103 (106)
T ss_pred --EEEEecCCHH-HHHHHHH
Confidence 3456665433 5555443
No 104
>PTZ00051 thioredoxin; Provisional
Probab=99.44 E-value=1.3e-13 Score=115.32 Aligned_cols=93 Identities=16% Similarity=0.323 Sum_probs=75.9
Q ss_pred EEecC-CCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeee
Q 010886 139 NVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (498)
Q Consensus 139 ~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~ 217 (498)
.++++ ++|++.++.+++++|.||++||++|+++.|.++++++.+.+ +.++.||++++. .++++++ |+++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~---~~~~~~~------v~~~ 72 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELS---EVAEKEN------ITSM 72 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchH---HHHHHCC------Ccee
Confidence 44544 56888888999999999999999999999999999997654 789999999554 4999999 9999
Q ss_pred eEEEEeCCCCcCCCCcccccCCCCHHHHH
Q 010886 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (498)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv 246 (498)
||+++|++|+. ...+.|. ..++|.
T Consensus 73 Pt~~~~~~g~~----~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 73 PTFKVFKNGSV----VDTLLGA-NDEALK 96 (98)
T ss_pred eEEEEEeCCeE----EEEEeCC-CHHHhh
Confidence 99999999865 2456675 445543
No 105
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.43 E-value=3.3e-13 Score=109.87 Aligned_cols=92 Identities=17% Similarity=0.321 Sum_probs=79.8
Q ss_pred CCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEe
Q 010886 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (498)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f 223 (498)
++|++.+..+++++|.||++||++|+.+.|.++++++. .+.+.++.+||++++ .++++++ +.++||+++|
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~------v~~~P~~~~~ 70 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP---ELAEEYG------VRSIPTFLFF 70 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh---hHHHhcC------cccccEEEEE
Confidence 35777777779999999999999999999999999988 667899999999654 4899998 9999999999
Q ss_pred CCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 224 PPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 224 ~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
.+|.. ...+.|..+.+.|.+|+
T Consensus 71 ~~g~~----~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 71 KNGKE----VDRVVGADPKEELEEFL 92 (93)
T ss_pred ECCEE----EEEEecCCCHHHHHHHh
Confidence 99864 35778989889999886
No 106
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.43 E-value=1.4e-13 Score=122.55 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=78.7
Q ss_pred CCCCcccc--cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEE
Q 010886 143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (498)
Q Consensus 143 ~~nF~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl 220 (498)
.++|++.| ..+++++|.|||+||++|+.+.|.++++|+++++.+.|.+||+++++. ++++|+ |++.||+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d---la~~y~------I~~~~t~ 81 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD---FNTMYE------LYDPCTV 81 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH---HHHHcC------ccCCCcE
Confidence 45678877 468899999999999999999999999999999999999999996654 999999 9977766
Q ss_pred E-EeCCCCcCCCCcccccC--------CCCHHHHHHHHHHH
Q 010886 221 V-AFPPGCKSSDCMTRFEG--------ELSVDAVTDWFATA 252 (498)
Q Consensus 221 ~-~f~~g~~~~~~~~~Y~G--------~r~~~~Iv~fv~k~ 252 (498)
+ +|++|... .....| ..+.++|++-+...
T Consensus 82 ~~ffk~g~~~---vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 82 MFFFRNKHIM---IDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred EEEEECCeEE---EEEecccccccccccCCHHHHHHHHHHH
Confidence 6 99998632 334456 45666666655543
No 107
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.42 E-value=3.5e-13 Score=113.00 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=77.3
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~ 230 (498)
+.+++++|.||++||+.|+.+.|.++++++.+.+.+.++.+|+++++ +++++++ |.++||+.+|++|+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~---~l~~~~~------v~~vPt~~i~~~g~~-- 79 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ---EIAEAAG------IMGTPTVQFFKDKEL-- 79 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---HHHHHCC------CeeccEEEEEECCeE--
Confidence 67889999999999999999999999999999888899999999654 4899998 999999999998865
Q ss_pred CCcccccCCCCHHHHHHHH
Q 010886 231 DCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 231 ~~~~~Y~G~r~~~~Iv~fv 249 (498)
...+.|.++.+.|.+|+
T Consensus 80 --v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 80 --VKEISGVKMKSEYREFI 96 (97)
T ss_pred --EEEEeCCccHHHHHHhh
Confidence 45788999999999886
No 108
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.39 E-value=2.5e-13 Score=146.18 Aligned_cols=68 Identities=28% Similarity=0.522 Sum_probs=62.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
.|||++|||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|..||+||..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 59999999999999999999999999999999976 456689999999999999999999999987653
No 109
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.36 E-value=1.3e-12 Score=112.90 Aligned_cols=95 Identities=12% Similarity=0.152 Sum_probs=78.7
Q ss_pred CcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCC
Q 010886 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (498)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~ 225 (498)
|...+.....++|.||+|||++|+.+.|.+++++... +.+.+..||.++++ +++++|+ |+++||+.+|.+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~---~l~~~~~------v~~vPt~~i~~~ 84 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK---EKAEKYG------VERVPTTIFLQD 84 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH---HHHHHcC------CCcCCEEEEEeC
Confidence 4455566777889999999999999999999999886 66899999999665 4999999 999999999998
Q ss_pred CCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 226 GCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 226 g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
|... ....|.|..+.+++.+|+...
T Consensus 85 g~~~--~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 85 GGKD--GGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred Ceec--ceEEEEecCchHHHHHHHHHH
Confidence 7542 123688988889999998764
No 110
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.32 E-value=1e-12 Score=112.15 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=67.3
Q ss_pred CCcccc--cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEE
Q 010886 145 DFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (498)
Q Consensus 145 nF~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~ 222 (498)
.|++.+ .++++++|.|+|+||++|+.+.|.++++|+++++.+.|.+||.++.+. ++++|+ |+..||+++
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d---va~~y~------I~amPtfvf 74 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV---YTQYFD------ISYIPSTIF 74 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH---HHHhcC------ceeCcEEEE
Confidence 455655 368999999999999999999999999999998878999999996654 999999 999999999
Q ss_pred eCCCCcC
Q 010886 223 FPPGCKS 229 (498)
Q Consensus 223 f~~g~~~ 229 (498)
|++|+..
T Consensus 75 fkngkh~ 81 (114)
T cd02986 75 FFNGQHM 81 (114)
T ss_pred EECCcEE
Confidence 9999754
No 111
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.32 E-value=2.5e-12 Score=108.47 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCccccee--eeeEEEEeCC--CC
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR--GLPSLVAFPP--GC 227 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~--~~PTl~~f~~--g~ 227 (498)
.+.++++.||++||++|+.+.|.++++|+++++.+.++.||+++++ .+++.++ |. ++||++++.+ |.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~---~~~~~~~------i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG---RHLEYFG------LKEEDLPVIAIINLSDGK 81 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH---HHHHHcC------CChhhCCEEEEEeccccc
Confidence 3689999999999999999999999999999999999999999654 4999999 88 9999999999 54
Q ss_pred cCCCCccccc-CCCCHHHHHHHHHHH
Q 010886 228 KSSDCMTRFE-GELSVDAVTDWFATA 252 (498)
Q Consensus 228 ~~~~~~~~Y~-G~r~~~~Iv~fv~k~ 252 (498)
+. .+. |..+.++|.+|+.+.
T Consensus 82 k~-----~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 82 KY-----LMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cc-----CCCccccCHHHHHHHHHhh
Confidence 43 444 445999999999764
No 112
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.31 E-value=2e-12 Score=120.32 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=70.8
Q ss_pred EEEecC-CCCcccccCC---CcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 138 FNVVTS-EDFPSIFHDS---KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 138 V~~Lt~-~nF~~~v~~~---~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
|.+++. ++|.+.|... .+++|.||+|||++|+.+.|.++++|+.+. .++|.+||+++. .++.+|+
T Consensus 64 v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~----~l~~~f~------ 132 (175)
T cd02987 64 VYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT----GASDEFD------ 132 (175)
T ss_pred EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch----hhHHhCC------
Confidence 788998 9999988432 499999999999999999999999999874 589999999954 4889998
Q ss_pred eeeeeEEEEeCCCCc
Q 010886 214 RRGLPSLVAFPPGCK 228 (498)
Q Consensus 214 I~~~PTl~~f~~g~~ 228 (498)
|+++||+++|++|..
T Consensus 133 v~~vPTlllyk~G~~ 147 (175)
T cd02987 133 TDALPALLVYKGGEL 147 (175)
T ss_pred CCCCCEEEEEECCEE
Confidence 999999999999975
No 113
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.3e-12 Score=123.24 Aligned_cols=65 Identities=34% Similarity=0.620 Sum_probs=60.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC----hHHHHHHHHhhhhHcCChhhhhcccccC
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYG 100 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~----~~~~f~~i~~ay~~L~d~~~r~~yd~~g 100 (498)
..|||++|||.++|+..||++|||+++++||||+++. +.++|..|++||++|+|+.+|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4699999999999999999999999999999999874 4588999999999999999999999985
No 114
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.27 E-value=1.4e-11 Score=99.38 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=69.2
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCccc
Q 010886 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (498)
Q Consensus 156 ~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~ 235 (498)
.+..||+|||++|+.+.|.++++++.+++.+.+..||+++++ +++++++ |+++||+++ +|.. .
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~vPt~~~--~g~~------~ 64 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP---QKAMEYG------IMAVPAIVI--NGDV------E 64 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH---HHHHHcC------CccCCEEEE--CCEE------E
Confidence 467899999999999999999999999877899999999655 4888888 999999986 6642 7
Q ss_pred ccCCCCHHHHHHHHHHH
Q 010886 236 FEGELSVDAVTDWFATA 252 (498)
Q Consensus 236 Y~G~r~~~~Iv~fv~k~ 252 (498)
+.|..+.+.|.+++.+.
T Consensus 65 ~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 65 FIGAPTKEELVEAIKKR 81 (82)
T ss_pred EecCCCHHHHHHHHHhh
Confidence 88999999999988764
No 115
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.27 E-value=6.3e-12 Score=110.07 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=81.5
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch--------hhhHHHHhCCCC
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIG 209 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~--------~~~~l~~~~~~~ 209 (498)
+..+|.++|.+.+++++..+|.|++|||++|+.+.|.+++++++ ....+..||.+.+. ...++.+++++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 35688888999999999999999999999999999999999998 44678899988543 223455666521
Q ss_pred cccceeeeeEEEEeCCCCcCCCCcccccC-CCCHHHHHHHH
Q 010886 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWF 249 (498)
Q Consensus 210 ~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G-~r~~~~Iv~fv 249 (498)
++|.+.||+++|++|+.. ....| ..+.++|.+|+
T Consensus 86 --~~i~~~PT~v~~k~Gk~v----~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 86 --TSFMGTPTFVHITDGKQV----SVRCGSSTTAQELQDIA 120 (122)
T ss_pred --ccCCCCCEEEEEeCCeEE----EEEeCCCCCHHHHHHHh
Confidence 227789999999999763 35567 55688888875
No 116
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.7e-12 Score=118.34 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=81.0
Q ss_pred EEEec-CCCCcccc--cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVT-SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt-~~nF~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|.+++ +..|+..+ ...+.++|.|||.|||+|++++|.|+.+|.++.+ ..|.+||.++-+ ..+..+| |
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~---~taa~~g------V 72 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECR---GTAATNG------V 72 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhh---chhhhcC------c
Confidence 34454 46688888 4466999999999999999999999999999965 459999999443 3667777 9
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHhh
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL 254 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~ 254 (498)
+..||+++|++|.+. ..++| -++.+|.+-+.+++.
T Consensus 73 ~amPTFiff~ng~ki----d~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 73 NAMPTFIFFRNGVKI----DQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred ccCceEEEEecCeEe----eeecC-CCHHHHHHHHHHHhc
Confidence 999999999999873 45665 457888888887743
No 117
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.22 E-value=1.3e-11 Score=108.18 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=76.6
Q ss_pred cccccCC-CcEEEEEecCCCCCCCCChHHHH---HHHHHhhccceEEEEEcccch----------hhhHHHHhCCCCccc
Q 010886 147 PSIFHDS-KPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIF 212 (498)
Q Consensus 147 ~~~v~~~-~~~lV~FYapwC~~C~~l~p~~~---~~A~~l~~~i~va~Vdc~~~~----------~~~~l~~~~~~~~~~ 212 (498)
++..+++ ++++|.|||+||++|+++.|.+. ++++.+++.+.+..||.+++. ....++.+++
T Consensus 7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~----- 81 (125)
T cd02951 7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR----- 81 (125)
T ss_pred HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC-----
Confidence 3455777 99999999999999999999985 566667666778899987542 1245888888
Q ss_pred ceeeeeEEEEeCCC-CcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 213 FRRGLPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 213 ~I~~~PTl~~f~~g-~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
|+++||+++|.++ +.. ...+.|..+.+.+.+++...
T Consensus 82 -v~~~Pt~~~~~~~gg~~---~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 82 -VRFTPTVIFLDPEGGKE---IARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred -CccccEEEEEcCCCCce---eEEecCCCCHHHHHHHHHHH
Confidence 9999999999986 442 34678999988888888765
No 118
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.22 E-value=1.3e-11 Score=116.51 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=67.8
Q ss_pred EEEecCCCCcccc-cC--CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIF-HD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v-~~--~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|.+++..+|...| .+ +.+++|.||+|||++|+.+.|.|+++|+.+. .++|.+||++ . ++.+|+ |
T Consensus 84 v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad---~---~~~~~~------i 150 (192)
T cd02988 84 VYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST---Q---CIPNYP------D 150 (192)
T ss_pred EEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHhhCC------C
Confidence 7889999998876 33 3589999999999999999999999999985 5899999998 3 356777 9
Q ss_pred eeeeEEEEeCCCCc
Q 010886 215 RGLPSLVAFPPGCK 228 (498)
Q Consensus 215 ~~~PTl~~f~~g~~ 228 (498)
+++||+++|++|..
T Consensus 151 ~~lPTlliyk~G~~ 164 (192)
T cd02988 151 KNLPTILVYRNGDI 164 (192)
T ss_pred CCCCEEEEEECCEE
Confidence 99999999999975
No 119
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.21 E-value=1.3e-11 Score=124.80 Aligned_cols=69 Identities=30% Similarity=0.476 Sum_probs=63.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCC--------hHHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~--------~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
.-||||||||+.+++.++||++||+|+.++||||.++ -.|+.++|++||+.|+|...|++|-.||+-+.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 6799999999999999999999999999999998653 35679999999999999999999999998763
No 120
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.21 E-value=1.5e-11 Score=113.06 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=55.2
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCChHH------HHHHHHhhhhHcCChhhhhcccc
Q 010886 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTA------DFLKIQYAYELLTDPLWKRNYDV 98 (498)
Q Consensus 37 ~d~y~ilgv~~~--a~~~~ik~ayr~l~~~~HPD~~~~~~~------~f~~i~~ay~~L~d~~~r~~yd~ 98 (498)
.|||++|||++. ++..+|+++||++++++|||+..+..+ .+..|++||++|+||.+|..|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999997 689999999999999999999764333 36799999999999999999974
No 121
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=2.7e-11 Score=111.97 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=54.7
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCC--------hHHHHHHHHhhhhHcCChhhhhcccc
Q 010886 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (498)
Q Consensus 37 ~d~y~ilgv~~~--a~~~~ik~ayr~l~~~~HPD~~~~--------~~~~f~~i~~ay~~L~d~~~r~~yd~ 98 (498)
.|||++|||++. ++..+||++||++++++|||+..+ +.+.+..|++||++|+||.+|..|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 677999999999999999998542 24468999999999999999999984
No 122
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.13 E-value=6.3e-11 Score=109.87 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=57.3
Q ss_pred CCccccccccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCC--h------HHHHHHHHhhhhHcCChhhhhcccc--cCC
Q 010886 34 SFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV--YGI 101 (498)
Q Consensus 34 ~~~~d~y~ilgv~~~--a~~~~ik~ayr~l~~~~HPD~~~~--~------~~~f~~i~~ay~~L~d~~~r~~yd~--~g~ 101 (498)
+...|||++|||++. ++..+|+++||++++++|||+.+. . .+.+..|++||++|+||.+|..|+. .|.
T Consensus 3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 346799999999996 578899999999999999998652 2 2336899999999999999999984 454
No 123
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.13 E-value=6.9e-11 Score=109.17 Aligned_cols=64 Identities=16% Similarity=0.322 Sum_probs=56.6
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCC--------hHHHHHHHHhhhhHcCChhhhhcccc
Q 010886 35 FPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (498)
Q Consensus 35 ~~~d~y~ilgv~~~--a~~~~ik~ayr~l~~~~HPD~~~~--------~~~~f~~i~~ay~~L~d~~~r~~yd~ 98 (498)
...|||++||+++. .+..+|+++||++++++|||+..+ +.+.+..|++||++|+||.+|..|+-
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 36799999999998 457999999999999999998652 24569999999999999999999984
No 124
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.13 E-value=4e-11 Score=104.07 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCCCcccccC--CCcEEEEEec-------CCCCCCCCChHHHHHHHHHhhccceEEEEEcccch----hhhHHHHhCCCC
Q 010886 143 SEDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIG 209 (498)
Q Consensus 143 ~~nF~~~v~~--~~~~lV~FYa-------pwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~----~~~~l~~~~~~~ 209 (498)
.++|.+.|.+ +++++|.||| +||++|+.+.|.+++++.++.+.+++.+||+++++ ....++.+++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-- 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-- 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC--
Confidence 3556667754 6899999999 99999999999999999999877899999998542 1234777777
Q ss_pred ccccee-eeeEEEEeCCCCc
Q 010886 210 QIFFRR-GLPSLVAFPPGCK 228 (498)
Q Consensus 210 ~~~~I~-~~PTl~~f~~g~~ 228 (498)
|+ ++||+++|.+|..
T Consensus 87 ----I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 87 ----LTTGVPTLLRWKTPQR 102 (119)
T ss_pred ----cccCCCEEEEEcCCce
Confidence 98 9999999987754
No 125
>PTZ00062 glutaredoxin; Provisional
Probab=99.10 E-value=6.8e-10 Score=105.35 Aligned_cols=162 Identities=8% Similarity=-0.023 Sum_probs=102.0
Q ss_pred CCCCcccccCC-CcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEE
Q 010886 143 SEDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (498)
Q Consensus 143 ~~nF~~~v~~~-~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~ 221 (498)
.++|++.++++ ...++.|+|+||+.|+++.|..+++++++ +.++|..||++ ++ |.++||++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d-----------~~------V~~vPtfv 67 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA-----------DA------NNEYGVFE 67 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc-----------cC------cccceEEE
Confidence 34566677544 78899999999999999999999999988 45899999976 46 99999999
Q ss_pred EeCCCCcCCCCcccccCCCCHHHHHHHHHHHhhcCCcccccccchhhhhhhhhcCCCcEEEEEEecC---CCCCcHH-HH
Q 010886 222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT---GERASPF-VR 297 (498)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~~~~P~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~---~~~~~~~-~~ 297 (498)
+|++|+.. .++.|. ++..|.+++.+.....+.. ...+++...-..+++|+|.... ..|+.-. .+
T Consensus 68 ~~~~g~~i----~r~~G~-~~~~~~~~~~~~~~~~~~~-------~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k 135 (204)
T PTZ00062 68 FYQNSQLI----NSLEGC-NTSTLVSFIRGWAQKGSSE-------DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVV 135 (204)
T ss_pred EEECCEEE----eeeeCC-CHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHH
Confidence 99999763 466665 4889999998874322221 1223333222223555554421 1232211 12
Q ss_pred HHHHhccccceEEEEEecccc-c-HHHHHHcCCCCCCEEEE
Q 010886 298 QISRNYWAYASFAFVLWREEE-S-SIWWNTFEVESAPAIVF 336 (498)
Q Consensus 298 ~~A~~~~~~~~f~~v~~~~~~-~-~~l~~~f~V~~~Pti~l 336 (498)
.+-... .+.|..+...+.. . +.+.+.-|-++.|.|++
T Consensus 136 ~~L~~~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 136 NMLNSS--GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHc--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 222222 4556666543221 1 33445556667888765
No 126
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.10 E-value=8e-11 Score=100.49 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=48.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcC
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~ 88 (498)
..++|++|||+++++.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999985 78889999999999985
No 127
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=6.5e-11 Score=120.72 Aligned_cols=67 Identities=24% Similarity=0.368 Sum_probs=62.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHhhhhHcCChhhhhcccccCCc
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~ 102 (498)
..|+|.+|||..++|+++|||.||++|...|||||- .+.|.|+.++.|||+|+|+++|+.||..-..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 679999999999999999999999999999999875 6788899999999999999999999975433
No 128
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.7e-11 Score=118.25 Aligned_cols=69 Identities=35% Similarity=0.561 Sum_probs=62.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCCh----HHHHHHHHhhhhHcCChhhhhcccccCCchh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~----~~~f~~i~~ay~~L~d~~~r~~yd~~g~~~~ 104 (498)
..|+|++|||.++|+.++|++|||+++++||||+|++. ..+|.++.+||++|+|+.+|..||.+|+++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~ 74 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL 74 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence 46999999999999999999999999999999998743 3369999999999999999999999998443
No 129
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.06 E-value=7.3e-09 Score=96.36 Aligned_cols=169 Identities=14% Similarity=0.243 Sum_probs=122.4
Q ss_pred ChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCC-CCHHHHHHHH
Q 010886 171 FSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (498)
Q Consensus 171 l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~-r~~~~Iv~fv 249 (498)
+.-.|.++|+.+.+.+.++.+.-. . +|++++ +.. |++++|+++... +..|.|. .+.++|.+|+
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~~~---~---~~~~~~------~~~-p~i~~~k~~~~~---~~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTFNE---E---LAKKYG------IKE-PTIVVYKKFDEK---PVVYDGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE-H---H---HHHHCT------CSS-SEEEEEECTTTS---EEEESSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEcHH---H---HHHHhC------CCC-CcEEEeccCCCC---ceecccccCCHHHHHHHH
Confidence 456899999999988999988722 2 888888 878 999999986443 5689998 8999999999
Q ss_pred HHHhhcCCcccccccchhhhhhhhhcCCCcEEEEEEecCCCCC----cHHHHHHHHhccccceEEEEEecccccHHHHHH
Q 010886 250 ATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERA----SPFVRQISRNYWAYASFAFVLWREEESSIWWNT 325 (498)
Q Consensus 250 ~k~~~~~P~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~----~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~ 325 (498)
.+. ..|....++..+ ...+.... ..+.++++.+..... ...++.+|.++++.+.|+++... ..+.+++.
T Consensus 72 ~~~--~~P~v~~~t~~n-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~~ 144 (184)
T PF13848_consen 72 KKN--SFPLVPELTPEN-FEKLFSSP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLKY 144 (184)
T ss_dssp HHH--SSTSCEEESTTH-HHHHHSTS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHHH
T ss_pred HHh--ccccccccchhh-HHHHhcCC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHHH
Confidence 998 688876677655 56665432 123555555321111 12335588888888888888644 23668899
Q ss_pred cCCC--CCCEEEEEeCCCCce-eeecCCCChhHHHHHHHh
Q 010886 326 FEVE--SAPAIVFLKDPGVKP-VVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 326 f~V~--~~Pti~lfk~~~~~~-~~y~g~~~~~~L~~fi~~ 362 (498)
+|++ ..|+++++....... ..+.|.++.+.|.+|++.
T Consensus 145 ~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9998 689999998544332 223788999999999973
No 130
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.01 E-value=1.6e-10 Score=108.81 Aligned_cols=101 Identities=12% Similarity=0.243 Sum_probs=87.9
Q ss_pred eeEEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 136 ~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
+++..++.+|+...+. .-|+++||||||+.|+.+.|.|+..|.--.+. +++|.||.+.|+- ++..|-|
T Consensus 24 s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg---------LsGRF~v 92 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG---------LSGRFLV 92 (248)
T ss_pred ceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc---------cceeeEE
Confidence 4688999999988874 45999999999999999999999999877776 7999999997763 4445559
Q ss_pred eeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
...|||.=.++|.-. .|.|.|+.+++++|+..+
T Consensus 93 taLptIYHvkDGeFr-----rysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 93 TALPTIYHVKDGEFR-----RYSGARDKNDFISFEEHR 125 (248)
T ss_pred EecceEEEeeccccc-----cccCcccchhHHHHHHhh
Confidence 999999999999764 999999999999999765
No 131
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.9e-10 Score=116.21 Aligned_cols=69 Identities=29% Similarity=0.462 Sum_probs=62.0
Q ss_pred cCCCCccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCCh----HHHHHHHHhhhhHcCChhhhhccccc
Q 010886 31 LPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVY 99 (498)
Q Consensus 31 ~~~~~~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~----~~~f~~i~~ay~~L~d~~~r~~yd~~ 99 (498)
+..+.-.|||+|||++++++..+||+|||++++.||||++.++ ..+|+++-.||.+|+||.+|..||.-
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 3445578999999999999999999999999999999998654 44699999999999999999999975
No 132
>PHA02624 large T antigen; Provisional
Probab=98.97 E-value=4.3e-10 Score=120.37 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=57.2
Q ss_pred ccccccccCCCCCC--CHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcCChhhhhcc
Q 010886 36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96 (498)
Q Consensus 36 ~~d~y~ilgv~~~a--~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~d~~~r~~y 96 (498)
..++|++|||+++| +.++||+|||+++++||||++ ++.++|++|+.||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 999999999999999999996 6789999999999999999999999
No 133
>PHA02125 thioredoxin-like protein
Probab=98.97 E-value=8.5e-10 Score=88.01 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=52.2
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccc
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y 236 (498)
+|.||||||++|+.+.|.+++++ ..+..||+++++ +++++++ |+++||++ +|+. ...+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~---~l~~~~~------v~~~PT~~---~g~~----~~~~ 59 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGV---ELTAKHH------IRSLPTLV---NTST----LDRF 59 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCH---HHHHHcC------CceeCeEE---CCEE----EEEE
Confidence 68999999999999999997653 457889988654 5999999 99999997 4432 2356
Q ss_pred cC-CCCHHHHHH
Q 010886 237 EG-ELSVDAVTD 247 (498)
Q Consensus 237 ~G-~r~~~~Iv~ 247 (498)
.| +++..+|.+
T Consensus 60 ~G~~~~~~~l~~ 71 (75)
T PHA02125 60 TGVPRNVAELKE 71 (75)
T ss_pred eCCCCcHHHHHH
Confidence 67 345455544
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.96 E-value=2e-09 Score=103.63 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~ 232 (498)
+.+.++.||+|||++|+.+.|.+++++.. .+.+.+..||.++++ +++++++ |.++||++++.+|.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~---~~~~~~~------V~~vPtl~i~~~~~----- 197 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENP---DLAEKYG------VMSVPKIVINKGVE----- 197 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCH---HHHHHhC------CccCCEEEEecCCE-----
Confidence 44455569999999999999999999987 456888999999654 4999999 99999999997662
Q ss_pred cccccCCCCHHHHHHHHHH
Q 010886 233 MTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 233 ~~~Y~G~r~~~~Iv~fv~k 251 (498)
.|.|..+.+.|.+|+.+
T Consensus 198 --~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 --EFVGAYPEEQFLEYILS 214 (215)
T ss_pred --EEECCCCHHHHHHHHHh
Confidence 38899999999999865
No 135
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.95 E-value=1.1e-09 Score=87.76 Aligned_cols=72 Identities=18% Similarity=0.127 Sum_probs=57.8
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCccccc
Q 010886 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (498)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~ 237 (498)
|.||++||++|+.+.|.++++++++...+.+..|| + .. .+.+++ |.+.||+++ +|.. .+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~--~~---~a~~~~------v~~vPti~i--~G~~------~~~ 62 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT-D--MN---EILEAG------VTATPGVAV--DGEL------VIM 62 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C--HH---HHHHcC------CCcCCEEEE--CCEE------EEE
Confidence 88999999999999999999999998778888887 1 12 467788 999999999 7754 477
Q ss_pred CC-CCHHHHHHHH
Q 010886 238 GE-LSVDAVTDWF 249 (498)
Q Consensus 238 G~-r~~~~Iv~fv 249 (498)
|. .+.+.|.+++
T Consensus 63 G~~~~~~~l~~~l 75 (76)
T TIGR00412 63 GKIPSKEEIKEIL 75 (76)
T ss_pred eccCCHHHHHHHh
Confidence 75 3557777665
No 136
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.93 E-value=1.3e-09 Score=119.29 Aligned_cols=101 Identities=16% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCCCcccc----cCCCcEEEEEecCCCCCCCCChHHH---HHHHHHhhccceEEEEEcccc-hhhhHHHHhCCCCcccce
Q 010886 143 SEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFR 214 (498)
Q Consensus 143 ~~nF~~~v----~~~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~i~va~Vdc~~~-~~~~~l~~~~~~~~~~~I 214 (498)
.++|++.+ .++++++|+|||+||++|+.++|.. +++.+.+++ +.+.++|++++ +...+++++++ |
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~------v 532 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYN------V 532 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcC------C
Confidence 45566666 3478999999999999999999875 677777864 67899999864 23456899998 9
Q ss_pred eeeeEEEEeC-CCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 215 RGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 215 ~~~PTl~~f~-~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
.++||+++|. +|+.. ....+.|..+.+++.+++.+.
T Consensus 533 ~g~Pt~~~~~~~G~~i--~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQEI--PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCCc--ccccccCCCCHHHHHHHHHHh
Confidence 9999999997 55431 123678999999999998764
No 137
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.93 E-value=6.5e-10 Score=96.61 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=61.7
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee--eeEEEEeC-CCC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG--LPSLVAFP-PGC 227 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~--~PTl~~f~-~g~ 227 (498)
.++++++|.|||+||++|+.+.|.+.+.+........+..||.++++. .+...++ +.| +||+++|. +|.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~------~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFS------PDGGYIPRILFLDPSGD 88 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcc------cCCCccceEEEECCCCC
Confidence 678999999999999999999999999877554444666777765432 1345666 766 99999996 665
Q ss_pred cCCCCcccccCCCCHHHHHHHH
Q 010886 228 KSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 228 ~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
.. .......|.++.+...+.+
T Consensus 89 ~~-~~~~~~~~~~~~~~f~~~~ 109 (117)
T cd02959 89 VH-PEIINKKGNPNYKYFYSSA 109 (117)
T ss_pred Cc-hhhccCCCCccccccCCCH
Confidence 42 1111334555555444443
No 138
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.91 E-value=8.8e-10 Score=109.19 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=49.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC----------ChHHHHHHHHhhhhHcCCh
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELLTDP 90 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~----------~~~~~f~~i~~ay~~L~d~ 90 (498)
..|+|++|||++++|.++||+|||+|+++||||++. .+.++|++|+.||++|+..
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999852 1467899999999999753
No 139
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.80 E-value=3.6e-09 Score=90.59 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=62.9
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHH---HHHhhccceEEEEEcccch-----------------hhhHHHHhCCCCc
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELGDIR-----------------LATHLAERKPIGQ 210 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~---A~~l~~~i~va~Vdc~~~~-----------------~~~~l~~~~~~~~ 210 (498)
.++++.+|.|++|||++|+++.++..+. +..++..+.+..++++... ...+++++++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG--- 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC---
Confidence 4678999999999999999999888854 4445555788888887543 1245778888
Q ss_pred ccceeeeeEEEEeC-CCCcCCCCcccccCCCCHHHHHHHH
Q 010886 211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 211 ~~~I~~~PTl~~f~-~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
|+++||++++. +|+. ...+.|..+.++|.+++
T Consensus 80 ---v~gtPt~~~~d~~G~~----v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 ---VNGTPTIVFLDKDGKI----VYRIPGYLSPEELLKML 112 (112)
T ss_dssp -----SSSEEEECTTTSCE----EEEEESS--HHHHHHHH
T ss_pred ---CCccCEEEEEcCCCCE----EEEecCCCCHHHHHhhC
Confidence 99999999996 5553 23578999999998764
No 140
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.76 E-value=2.5e-08 Score=92.09 Aligned_cols=92 Identities=10% Similarity=0.154 Sum_probs=73.6
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchh-------------------hhHHHHhCCCCcc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------ATHLAERKPIGQI 211 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~-------------------~~~l~~~~~~~~~ 211 (498)
.+++++|.||++||++|+...|.+.++++++.+. +.+..|++++... ...+++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---- 135 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYG---- 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcC----
Confidence 4678999999999999999999999999999865 7888999874321 234666676
Q ss_pred cceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 212 ~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
|.++|+++++.+++.. ...+.|..+.+++.+++.+.
T Consensus 136 --v~~~P~~~lid~~g~i---~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 136 --VGPLPTTFLIDKDGKV---VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred --CCCcCeEEEECCCCcE---EEEEeCCCCHHHHHHHHHHh
Confidence 9999999888755443 34678999999999988754
No 141
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.3e-08 Score=93.25 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=56.9
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCChHH----HHHHHHhhhhHcCChhhhhccc
Q 010886 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTA----DFLKIQYAYELLTDPLWKRNYD 97 (498)
Q Consensus 35 ~~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~~~----~f~~i~~ay~~L~d~~~r~~yd 97 (498)
++-|||++|.|.+..+.++||+.||+|++..|||+||++.+ .|..+.+||..|-|+..|+.-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 38899999999999999999999999999999999996544 4999999999999999777654
No 142
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.70 E-value=4.2e-08 Score=97.63 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=69.7
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch--------hhhHHHHhCCCCcccceeeeeEEEEe
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIGQIFFRRGLPSLVAF 223 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~--------~~~~l~~~~~~~~~~~I~~~PTl~~f 223 (498)
.+++.||.||++||++|+.+.|.++++++++. +.|..|+.+.+. ....+++++| |+++||++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g------V~~vPtl~Lv 236 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLK------IRTVPAVFLA 236 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcC------CCcCCeEEEE
Confidence 36789999999999999999999999999875 556666665321 1134778888 9999999999
Q ss_pred CC-CCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 224 PP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 224 ~~-g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
.+ |+.. .....|..+.+.|.+.+...
T Consensus 237 ~~~~~~v---~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 237 DPDPNQF---TPIGFGVMSADELVDRILLA 263 (271)
T ss_pred ECCCCEE---EEEEeCCCCHHHHHHHHHHH
Confidence 87 4432 12355899999999988765
No 143
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.68 E-value=3.3e-08 Score=76.64 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=48.0
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEE
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~ 222 (498)
++.||++||++|+++.|.+++++.. .+.+.+..+|.++++ +++++++ |.++||+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~---~l~~~~~------i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAEFP---DLADEYG------VMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEcccCH---hHHHHcC------CcccCEEEE
Confidence 6789999999999999999999765 445889999998654 4889999 999999865
No 144
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.64 E-value=7.9e-08 Score=83.55 Aligned_cols=93 Identities=19% Similarity=0.111 Sum_probs=64.8
Q ss_pred ecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccc--------------------hhhh
Q 010886 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------------------RLAT 200 (498)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~--------------------~~~~ 200 (498)
++.+++......+++++|.||++||++|+.+.|.+.++++.+. +..|..+.+ ....
T Consensus 8 ~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (123)
T cd03011 8 LDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG 83 (123)
T ss_pred CCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc
Confidence 4444444444456899999999999999999999999987732 222222111 0113
Q ss_pred HHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHH
Q 010886 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247 (498)
Q Consensus 201 ~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~ 247 (498)
.++++++ |.++||++++.+|+ . ...+.|..+.++|.+
T Consensus 84 ~~~~~~~------i~~~P~~~vid~~g-i---~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWG------VSVTPAIVIVDPGG-I---VFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCC------CCcccEEEEEcCCC-e---EEEEeccCCHHHHHh
Confidence 4777777 99999999998776 3 346778888888864
No 145
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.63 E-value=6.7e-08 Score=85.54 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=69.6
Q ss_pred CCCCcccccchhhhccCCCCCcCCCCCCceeEEEEEeCCC-----chhhHHHHHHHHHHHHhhcccccccccccCCCchH
Q 010886 366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-----SPELNKMRETIRRVQETLLSDDESNAADTDQSLAP 440 (498)
Q Consensus 366 ~~vp~lt~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~~~-----~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~ 440 (498)
|.+.++++++.++..|..+ ++|+|++.++ .++.+++++.++++|+
T Consensus 2 ~~~~~l~~~~~~~~~C~~~-----------~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk------------------- 51 (130)
T cd02983 2 PEIIELTSEDVFEETCEEK-----------QLCIIAFLPHILDCQASCRNKYLEILKSVAE------------------- 51 (130)
T ss_pred CceEEecCHHHHHhhccCC-----------CeEEEEEcCccccCCHHHHHHHHHHHHHHHH-------------------
Confidence 5678999999999899631 4999999873 2356788888888888
Q ss_pred HHHhccCCceEEEEEeCccCchhhhhhhhhhheeeecc--CCceeeeeeccc
Q 010886 441 AAVAFRNKRLTFAWLDGEAQDVSFIMLISLFYVDFFLH--SDLFVLWLLFPS 490 (498)
Q Consensus 441 ~a~~~~~~~~~f~wvd~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 490 (498)
+|+++++.|+|+|+..|.. +.++|.- +++|.+++.+++
T Consensus 52 ---~~kgk~i~Fv~vd~~~~~~---------~~~~fgl~~~~~P~v~i~~~~ 91 (130)
T cd02983 52 ---KFKKKPWGWLWTEAGAQLD---------LEEALNIGGFGYPAMVAINFR 91 (130)
T ss_pred ---HhcCCcEEEEEEeCcccHH---------HHHHcCCCccCCCEEEEEecc
Confidence 8999889999999999999 8888875 479999999986
No 146
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.62 E-value=8.4e-08 Score=82.22 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=45.1
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEE
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl 220 (498)
++++++|.||++||++|++..|.++++++.+++.+.+..+.-++......++++++ +.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~------~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHG------LEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhC------CCCCcEE
Confidence 47899999999999999999999999998886655555452122223344677776 4455554
No 147
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.61 E-value=4e-08 Score=86.18 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCcccccCCCcEEEEEecCCCCCCCCChHH-HH--HHHHHhhccceEEEEEcccchhhhHHHHhCC--CCcccceeeeeE
Q 010886 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGA-WK--TIAALLEGIANTGMVELGDIRLATHLAERKP--IGQIFFRRGLPS 219 (498)
Q Consensus 145 nF~~~v~~~~~~lV~FYapwC~~C~~l~p~-~~--~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~--~~~~~~I~~~PT 219 (498)
.+....++++++||.|||+||+.|+.|.+. |. ++++.+.....+.+||.++++. +++.+. ....|++.|+||
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~---~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD---VDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH---HHHHHHHHHHHhcCCCCCCE
Confidence 355566889999999999999999999873 43 5677777677788999986543 433210 000122889999
Q ss_pred EEEeCCCCc
Q 010886 220 LVAFPPGCK 228 (498)
Q Consensus 220 l~~f~~g~~ 228 (498)
++++.+.+.
T Consensus 84 ~vfl~~~G~ 92 (124)
T cd02955 84 NVFLTPDLK 92 (124)
T ss_pred EEEECCCCC
Confidence 999976543
No 148
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.60 E-value=5.9e-08 Score=89.74 Aligned_cols=62 Identities=10% Similarity=0.168 Sum_probs=54.2
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHhhcCCCCCC--C------hHHHHHHHHhhhhHcCChhhhhcccc
Q 010886 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEI--P------STADFLKIQYAYELLTDPLWKRNYDV 98 (498)
Q Consensus 37 ~d~y~ilgv~~~--a~~~~ik~ayr~l~~~~HPD~~~--~------~~~~f~~i~~ay~~L~d~~~r~~yd~ 98 (498)
.|||++||+++. .+..+++++||+|.+++|||+-. + +.+.-..||+||++|+||.+|..|--
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 599999999997 78889999999999999999754 2 23357899999999999999999964
No 149
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.56 E-value=1.9e-07 Score=84.95 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=64.4
Q ss_pred cccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh---------hhHHH-HhCCCCcccceeeee
Q 010886 149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL---------ATHLA-ERKPIGQIFFRRGLP 218 (498)
Q Consensus 149 ~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~---------~~~l~-~~~~~~~~~~I~~~P 218 (498)
.+...+..+|+|||+||++|++..|.+++++++++ +.|..|+.++... ...+. ..++. ++|.++|
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~---~~v~~iP 120 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPN---PRPVVTP 120 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhcc---CCCCCCC
Confidence 33455667999999999999999999999999874 4555666653210 01122 23311 0289999
Q ss_pred EEEEeCC-CCcCCCCcccccCCCCHHHHHHHHHH
Q 010886 219 SLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 219 Tl~~f~~-g~~~~~~~~~Y~G~r~~~~Iv~fv~k 251 (498)
|.+++.. |... ...+.|..+.+++.+.+.+
T Consensus 121 Tt~LID~~G~~i---~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 121 ATFLVNVNTRKA---YPVLQGAVDEAELANRMDE 151 (153)
T ss_pred eEEEEeCCCCEE---EEEeecccCHHHHHHHHHH
Confidence 9999965 3321 1246799999988877654
No 150
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5e-08 Score=90.90 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=69.5
Q ss_pred cCCCCcccc--cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccceeeee
Q 010886 142 TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (498)
Q Consensus 142 t~~nF~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~P 218 (498)
+.+.+++.+ +....|+|+|||-|.+.|.+.+|.|.+++.++... .++|+||.. ...+.+++|+++-.=.-+..|
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG---rfpd~a~kfris~s~~srQLP 207 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG---RFPDVAAKFRISLSPGSRQLP 207 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec---cCcChHHheeeccCcccccCC
Confidence 344555555 67889999999999999999999999999998765 699999999 444588999865333356899
Q ss_pred EEEEeCCCCcC
Q 010886 219 SLVAFPPGCKS 229 (498)
Q Consensus 219 Tl~~f~~g~~~ 229 (498)
|+++|.+|...
T Consensus 208 T~ilFq~gkE~ 218 (265)
T KOG0914|consen 208 TYILFQKGKEV 218 (265)
T ss_pred eEEEEccchhh
Confidence 99999999764
No 151
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.54 E-value=2.4e-07 Score=76.45 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=61.5
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~ 232 (498)
+.+-+..|++|||++|....+.++++++.. +.+.+..+|.++. .+++++|+ |.++||+++ +|+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~---~e~a~~~~------V~~vPt~vi--dG~~---- 75 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALF---QDEVEERG------IMSVPAIFL--NGEL---- 75 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhC---HHHHHHcC------CccCCEEEE--CCEE----
Confidence 455688899999999999999999999765 4589999999844 45899999 999999964 7754
Q ss_pred cccccCCCCHHHHH
Q 010886 233 MTRFEGELSVDAVT 246 (498)
Q Consensus 233 ~~~Y~G~r~~~~Iv 246 (498)
.+.|..+.++++
T Consensus 76 --~~~G~~~~~e~~ 87 (89)
T cd03026 76 --FGFGRMTLEEIL 87 (89)
T ss_pred --EEeCCCCHHHHh
Confidence 567877766654
No 152
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.54 E-value=1.8e-07 Score=82.46 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=53.7
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc---cceEEEEEcccchh---------------------hhHHHHhCC
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRL---------------------ATHLAERKP 207 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~---~i~va~Vdc~~~~~---------------------~~~l~~~~~ 207 (498)
.++++||.||++||++|+...|.+.++++++.+ .+.+..|+.+++.. ...+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 467899999999999999999999999998864 35666677664321 134566666
Q ss_pred CCcccceeeeeEEEEeCCC
Q 010886 208 IGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 208 ~~~~~~I~~~PTl~~f~~g 226 (498)
|.++||++++..+
T Consensus 97 ------v~~~P~~~lid~~ 109 (131)
T cd03009 97 ------IEGIPTLIILDAD 109 (131)
T ss_pred ------CCCCCEEEEECCC
Confidence 9999999999743
No 153
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.53 E-value=3.7e-07 Score=80.40 Aligned_cols=100 Identities=9% Similarity=0.068 Sum_probs=83.7
Q ss_pred EecCCCCcccccCCCcEEEEEecC--CCCCCCCChHHHHHHHHHhhc-cceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 140 VVTSEDFPSIFHDSKPWLIQVYSD--GSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FYap--wC~~C~~l~p~~~~~A~~l~~-~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
.++..+.+..+......++.|-.+ -+..+...+=..+++|+++.+ .+++++||+++++. |+.+|| |++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~---LA~~fg------V~s 91 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA---IGDRFG------VFR 91 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH---HHHHcC------Ccc
Confidence 366677788887777777777654 356788899999999999975 48999999996654 999999 999
Q ss_pred eeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 217 ~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+||+++|++|+. .....|.++.+.+.+|+.+.
T Consensus 92 iPTLl~FkdGk~----v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 92 FPATLVFTGGNY----RGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred CCEEEEEECCEE----EEEEeCcCCHHHHHHHHHHH
Confidence 999999999976 35778999999999999886
No 154
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.52 E-value=2.7e-07 Score=98.98 Aligned_cols=91 Identities=20% Similarity=0.092 Sum_probs=67.9
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc-cceEEEEEcc-----cc--------------------hhhhHHHH
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELG-----DI--------------------RLATHLAE 204 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~-~i~va~Vdc~-----~~--------------------~~~~~l~~ 204 (498)
+++++++|.|||+||++|++..|++++++++++. .+.|..|+.+ ++ .....+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 4788999999999999999999999999998873 2455444331 00 01223566
Q ss_pred hCCCCcccceeeeeEEEEe-CCCCcCCCCcccccCCCCHHHHHHHHHH
Q 010886 205 RKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 205 ~~~~~~~~~I~~~PTl~~f-~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k 251 (498)
.++ |+++||++++ ++|.. ...+.|..+.+.|..++..
T Consensus 134 ~fg------V~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLN------ISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcC------CCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHHH
Confidence 666 9999999665 56654 3467899999999999974
No 155
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.50 E-value=2.5e-07 Score=81.86 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=53.4
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc---ceEEEEEcccchh----------------------hhHHHHhC
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL----------------------ATHLAERK 206 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---i~va~Vdc~~~~~----------------------~~~l~~~~ 206 (498)
.+++++|.|+++||++|+...|.++++++.+++. +.+..|+.+++.. ...+++.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4689999999999999999999999999988753 5677777764321 12344445
Q ss_pred CCCcccceeeeeEEEEeCCC
Q 010886 207 PIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 207 ~~~~~~~I~~~PTl~~f~~g 226 (498)
+ |.++||++++.++
T Consensus 96 ~------v~~iPt~~lid~~ 109 (132)
T cd02964 96 K------VEGIPTLVVLKPD 109 (132)
T ss_pred C------CCCCCEEEEECCC
Confidence 5 9999999999744
No 156
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.49 E-value=1.6e-07 Score=82.23 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=57.4
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch--------------------hhhHHHHhCCCCcc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------------------LATHLAERKPIGQI 211 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~--------------------~~~~l~~~~~~~~~ 211 (498)
.+++++|.||++||++|+...|.++++++... +.|..|+.++.. ....+++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---- 97 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG---- 97 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC----
Confidence 47899999999999999999999999987752 666666643110 1122455555
Q ss_pred cceeeeeEEEEe-CCCCcCCCCcccccCCCCHHHH
Q 010886 212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAV 245 (498)
Q Consensus 212 ~~I~~~PTl~~f-~~g~~~~~~~~~Y~G~r~~~~I 245 (498)
|.++|+.+++ ++|.. ...|.|..+.+.|
T Consensus 98 --v~~~P~~~~ld~~G~v----~~~~~G~~~~~~~ 126 (127)
T cd03010 98 --VYGVPETFLIDGDGII----RYKHVGPLTPEVW 126 (127)
T ss_pred --CCCCCeEEEECCCceE----EEEEeccCChHhc
Confidence 9999955555 56754 3467798887654
No 157
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.48 E-value=2.9e-07 Score=77.58 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=55.1
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhh-ccceEEEEEcccc--hhh------------------hHHHHhCCCCcc
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDI--RLA------------------THLAERKPIGQI 211 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~-~~i~va~Vdc~~~--~~~------------------~~l~~~~~~~~~ 211 (498)
+++++|.||++||++|++..+.+.++.+.++ ..+.+..|+++.+ ... ..+++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG---- 94 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC----
Confidence 6899999999999999999999999999986 3478999999863 110 23566666
Q ss_pred cceeeeeEEEEeCCC
Q 010886 212 FFRRGLPSLVAFPPG 226 (498)
Q Consensus 212 ~~I~~~PTl~~f~~g 226 (498)
+.++|+++++.++
T Consensus 95 --~~~~P~~~l~d~~ 107 (116)
T cd02966 95 --VRGLPTTFLIDRD 107 (116)
T ss_pred --cCccceEEEECCC
Confidence 8899999999643
No 158
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.47 E-value=1.7e-07 Score=85.52 Aligned_cols=50 Identities=16% Similarity=0.360 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCC--C------hHHHHHHHHhhhhHcCChhhhhcccc
Q 010886 49 SSVEQVKEAYEKFSSKWNSGEEI--P------STADFLKIQYAYELLTDPLWKRNYDV 98 (498)
Q Consensus 49 a~~~~ik~ayr~l~~~~HPD~~~--~------~~~~f~~i~~ay~~L~d~~~r~~yd~ 98 (498)
.+..+|+++||++++++|||+.+ + +.+.+..|++||++|+||.+|..|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 46789999999999999999743 2 34579999999999999999999985
No 159
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.45 E-value=1.5e-06 Score=74.98 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=70.1
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEe--cCCCCCcHHHHHHHHhccc---cceEEEEEecc---cccHHHHHHcCCC--CC
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYWA---YASFAFVLWRE---EESSIWWNTFEVE--SA 331 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~--~~~~~~~~~~~~~A~~~~~---~~~f~~v~~~~---~~~~~l~~~f~V~--~~ 331 (498)
+++.+ +++++.+.. .++|-|+. +-+.. .+.++.+|.++.. .+.++.|...+ .+..+|+++|+|+ ++
T Consensus 6 L~~~n-F~~~v~~~~--~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 6 LDTVT-FYKVIPKFK--YSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred CChhh-HHHHHhcCC--cEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 44444 567776432 36777888 65543 4777777766532 35577765422 1237799999999 89
Q ss_pred CEEEEEeCCC-CceeeecCC-CChhHHHHHHHhc
Q 010886 332 PAIVFLKDPG-VKPVVYYGS-FNNSRLSEVMEQN 363 (498)
Q Consensus 332 Pti~lfk~~~-~~~~~y~g~-~~~~~L~~fi~~~ 363 (498)
|||.+|++++ ..+..|.|. ++.+.|.+||+++
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999873 467899996 9999999999875
No 160
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.38 E-value=8.5e-07 Score=82.37 Aligned_cols=95 Identities=20% Similarity=0.158 Sum_probs=65.3
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccc-hhhhHHHHhCC-------------CCcccceee
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKP-------------IGQIFFRRG 216 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~-~~~~~l~~~~~-------------~~~~~~I~~ 216 (498)
..+++++|.||++||++|++..|.++++++. .+.+..|+.++. ......+++++ +.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3578999999999999999999999988753 256667775422 11112222211 123566999
Q ss_pred eeEEEEe-CCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 217 LPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 217 ~PTl~~f-~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+|+.+++ ++|+. ...+.|..+.+++.+++.+.
T Consensus 138 ~P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 138 APETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence 9965555 67764 23566999999999998775
No 161
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.3e-07 Score=87.79 Aligned_cols=67 Identities=25% Similarity=0.250 Sum_probs=59.4
Q ss_pred ccccccccCCCC---CCCHHHHHHHHHHHHhhcCCCCC-----CChHHHHHHHHhhhhHcCChhhhhcccccCCc
Q 010886 36 PPSHYDALGIKP---YSSVEQVKEAYEKFSSKWNSGEE-----IPSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (498)
Q Consensus 36 ~~d~y~ilgv~~---~a~~~~ik~ayr~l~~~~HPD~~-----~~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~~ 102 (498)
..|+|.+||++. .++..+|.++.++...+||||+. .++.+-|..|++||++|+|+.+|..||.....
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 679999999996 57888999999999999999975 36778899999999999999999999976544
No 162
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.33 E-value=1.3e-06 Score=75.21 Aligned_cols=92 Identities=8% Similarity=0.171 Sum_probs=70.1
Q ss_pred cCCCcEEEEEecCCCCCCCCChH-HH--HHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCC-C
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP-G 226 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p-~~--~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~-g 226 (498)
+++++++|.|+++||..|+.+.. .| +++.+.++....+.++|.++. ....++..++ +.++|++.++.+ +
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~------~~~~P~~~~i~~~~ 87 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYK------VDKYPHIAIIDPRT 87 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhC------ccCCCeEEEEeCcc
Confidence 66899999999999999999865 45 345666766656677787642 2345888888 999999999975 3
Q ss_pred CcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 227 ~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
... .....|..+++.+.+-+.+.
T Consensus 88 g~~---l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 88 GEV---LKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred CcE---eEEEcCCCCHHHHHHHHHHH
Confidence 322 34677999999999888765
No 163
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.30 E-value=1.8e-06 Score=81.14 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=65.5
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCC-------------Ccccceee
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPI-------------GQIFFRRG 216 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~-------------~~~~~I~~ 216 (498)
..+++++|.|||+||++|++..|.++++++. .+.|..|+.++++. .....++++. .+.|+|.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3578999999999999999999999988652 35677787654322 1112222211 22466999
Q ss_pred eeEEEEe-CCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 217 LPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 217 ~PTl~~f-~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+|+.+++ ++|.. ...+.|..+.+.+.+++...
T Consensus 143 ~P~t~vid~~G~i----~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 143 APETFLIDGNGII----RYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred CCeEEEECCCceE----EEEEecCCCHHHHHHHHHHH
Confidence 9965555 56654 34667999999888888765
No 164
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.24 E-value=1.8e-06 Score=77.76 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=54.8
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc--------cceEEEEEcccchh-hhHHHHhCC---------------
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--------IANTGMVELGDIRL-ATHLAERKP--------------- 207 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~--------~i~va~Vdc~~~~~-~~~l~~~~~--------------- 207 (498)
++++++|.|+|+||+.|++..|..+++.+++++ .+.+..|+.+++.. ..+..++.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 468999999999999999999999999887754 26777888775422 122333332
Q ss_pred CCcccceeeeeEEEEeCCCC
Q 010886 208 IGQIFFRRGLPSLVAFPPGC 227 (498)
Q Consensus 208 ~~~~~~I~~~PTl~~f~~g~ 227 (498)
+.+.|+|.++||.+++...+
T Consensus 104 l~~~y~v~~iPt~vlId~~G 123 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDG 123 (146)
T ss_pred HHHHcCCCCCCEEEEECCCC
Confidence 12255599999999997543
No 165
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.20 E-value=2.3e-06 Score=70.79 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=52.4
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhh--ccceEEEEEcccch-hhhHHHHhCCC---------------Ccccce
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIR-LATHLAERKPI---------------GQIFFR 214 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~--~~i~va~Vdc~~~~-~~~~l~~~~~~---------------~~~~~I 214 (498)
+++++|.|+|+||++|++..|...++.+.++ +.+.+..|+++++. ...+..++.+. .+.|.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999999 66888889888542 11222222211 124558
Q ss_pred eeeeEEEEeCCC
Q 010886 215 RGLPSLVAFPPG 226 (498)
Q Consensus 215 ~~~PTl~~f~~g 226 (498)
+++|+++++.++
T Consensus 81 ~~iP~~~lld~~ 92 (95)
T PF13905_consen 81 NGIPTLVLLDPD 92 (95)
T ss_dssp TSSSEEEEEETT
T ss_pred CcCCEEEEECCC
Confidence 899998888654
No 166
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.19 E-value=4.3e-06 Score=77.79 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=62.9
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch----------hhhHHHHhCCCCcccce--eeeeEEEEeC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFR--RGLPSLVAFP 224 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~----------~~~~l~~~~~~~~~~~I--~~~PTl~~f~ 224 (498)
+|.||++||++|++..|..++++++++ +.|..|+.++.. ....+...|+ + .++||..++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g------~~~~~iPttfLId 144 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFP------NIPVATPTTFLVN 144 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhC------CCCCCCCeEEEEe
Confidence 788999999999999999999999984 556667766331 1122445565 5 6999999995
Q ss_pred C-CCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 225 P-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 225 ~-g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
. |... ...+.|..+.++|.+.+.+.
T Consensus 145 ~~G~i~---~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 145 VNTLEA---LPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred CCCcEE---EEEEECCCCHHHHHHHHHHH
Confidence 4 4331 12578999999998887765
No 167
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2e-06 Score=80.60 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=62.6
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHH
Q 010886 3 GPTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKI 80 (498)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~--~~~~~f~~i 80 (498)
++.+|++|+++--++++.-..+- .+ -....-..+|.+|||..+|+.+++|.||.+|++++|||... .+.++|.+|
T Consensus 16 ~sv~~~rvkmlpyfgiirnrll~-~~--kske~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qi 92 (342)
T KOG0568|consen 16 ASVAINRVKMLPYFGIIRNRLLH-LH--KSKEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQI 92 (342)
T ss_pred heeccchhcccchhhhHHHHHHH-Hh--hhHHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHH
Confidence 35567777777666655443221 10 01112457999999999999999999999999999999643 578899999
Q ss_pred Hhhhh-HcCCh
Q 010886 81 QYAYE-LLTDP 90 (498)
Q Consensus 81 ~~ay~-~L~d~ 90 (498)
.+||. +|+.-
T Consensus 93 deafrkvlq~~ 103 (342)
T KOG0568|consen 93 DEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHHHHH
Confidence 99999 77643
No 168
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.15 E-value=1.3e-06 Score=70.80 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=48.9
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHH---HHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~ 224 (498)
++++++||.||++||+.|+.+.... .++.+.+...+....||.++..... ++. .+++|+++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~----~~~------~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA----QFD------RQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH----HHH------HCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH----HhC------CccCCEEEEeC
Confidence 6799999999999999999998877 4555656777889999998543321 111 35899999874
No 169
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.13 E-value=2.6e-05 Score=68.00 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=65.9
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecC------CC--CCcHHHHHHHHhc--cccceEEEEEecccccHHHHHHcCCCCC
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKT------GE--RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESA 331 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~------~~--~~~~~~~~~A~~~--~~~~~f~~v~~~~~~~~~l~~~f~V~~~ 331 (498)
+++.+ +++.+.+. ..++|++|... ++ .+.|.+..+|.++ .+.+.|+.|+... ..+++++|||.+.
T Consensus 14 lt~~n-F~~~v~~~--~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~i 88 (120)
T cd03065 14 LNEKN-YKQVLKKY--DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEE 88 (120)
T ss_pred CChhh-HHHHHHhC--CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCccc
Confidence 44444 45555432 34777777642 22 2334555666666 5667888886432 4789999999999
Q ss_pred CEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 010886 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 332 Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
||+++|+++. .+.|.|.++.+.|.+||.+
T Consensus 89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 9999999764 4559999999999999985
No 170
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.12 E-value=6.2e-06 Score=96.53 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=68.8
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcc---cch---------------------hhhHHHHhC
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG---DIR---------------------LATHLAERK 206 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~---~~~---------------------~~~~l~~~~ 206 (498)
.+++++|.|||+||++|++..|.++++++++++. +.|..|.+. +++ ....+.+++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4789999999999999999999999999999765 555555431 110 011244444
Q ss_pred CCCcccceeeeeEEEEe-CCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 207 ~~~~~~~I~~~PTl~~f-~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+ |+++||++++ ++|+. ...+.|....+.|.+++.+.
T Consensus 499 ~------V~~iPt~ilid~~G~i----v~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 G------VSSWPTFAVVSPNGKL----IAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred C------CCccceEEEECCCCeE----EEEEecccCHHHHHHHHHHH
Confidence 4 9999999999 56754 34577999999999998775
No 171
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.12 E-value=2.7e-06 Score=90.76 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=73.7
Q ss_pred CCcccccCCC--cEEEEEecCCCCCCCCChHHHH-H--HHHHhhccceEEEEEccc-chhhhHHHHhCCCCcccceeeee
Q 010886 145 DFPSIFHDSK--PWLIQVYSDGSYLCGQFSGAWK-T--IAALLEGIANTGMVELGD-IRLATHLAERKPIGQIFFRRGLP 218 (498)
Q Consensus 145 nF~~~v~~~~--~~lV~FYapwC~~C~~l~p~~~-~--~A~~l~~~i~va~Vdc~~-~~~~~~l~~~~~~~~~~~I~~~P 218 (498)
..++.+.+++ +++|.|||+||-.||.+++.-- + ++.++.+ +.+-++|.|+ ++...++-++++ +-|.|
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~------~~G~P 536 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLG------VFGVP 536 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcC------CCCCC
Confidence 4555664444 9999999999999999876543 2 2223333 5788999984 556677888888 89999
Q ss_pred EEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 219 Tl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
++++|..+... +..-.|..+++.+.+++++.
T Consensus 537 ~~~ff~~~g~e---~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSE---PEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCc---CcCCcceecHHHHHHHHHHh
Confidence 99999955443 33478999999999999875
No 172
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.10 E-value=1.7e-05 Score=65.86 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=65.8
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecCCCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCC
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~ 341 (498)
+++.+.++.++... ..++|.+|.+.+......+..+|..+++.+.|+.+. +..+.+++++. .|++++|++.+
T Consensus 4 i~s~~~l~~~~~~~--~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~ 75 (97)
T cd02981 4 LTSKEELEKFLDKD--DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFE 75 (97)
T ss_pred cCCHHHHHHHhccC--CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEC-----hHHHHHHcCCC-CCceEEeCCcc
Confidence 34444456666532 234555554433333456677888888888888875 34577778875 48999999887
Q ss_pred CceeeecCCCChhHHHHHHHhc
Q 010886 342 VKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 342 ~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
+.++.|.|+++.++|.+||..|
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHhC
Confidence 7888899999889999999764
No 173
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.09 E-value=7.7e-06 Score=60.36 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=50.0
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
++.|+++||++|+++.+.+.+. +...+.+.+..+++++..........++ +.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYG------VGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCC------CccccEEEEEeCC
Confidence 5789999999999999999998 5556668999999996654222223556 8899999999876
No 174
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.08 E-value=2.1e-05 Score=65.51 Aligned_cols=96 Identities=25% Similarity=0.389 Sum_probs=67.0
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEe-cCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEE
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lf 337 (498)
++.++ +++.+.. .+++++++|. +.+ ....+.+..++..+.+.+.|+.+... +.+.++++|+|++.|++++|
T Consensus 4 lt~~~-f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 4 LTDEN-FEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp ESTTT-HHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred CCHHH-HHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence 34444 5555553 2345555554 322 22346667788877767777777643 24789999999999999999
Q ss_pred eCCCCceeeecCCCChhHHHHHHHhc
Q 010886 338 KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 338 k~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
+++.. ...|.|.++.+.|.+||++|
T Consensus 79 ~~g~~-~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKE-VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEE-EEEEESSSSHHHHHHHHHHH
T ss_pred ECCcE-EEEEECCCCHHHHHHHHHcC
Confidence 97554 34889999999999999875
No 175
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.06 E-value=2.7e-05 Score=65.79 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=67.9
Q ss_pred cccchhhhhhhh-hcCCCcEEEEEEecCCCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCC
Q 010886 262 YTKESMGKNFLA-KTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (498)
Q Consensus 262 it~~~~~~~fl~-~~~~~~~~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~ 340 (498)
+++.+.++.|++ ..+ .++|.+|.+........+..+|..+|+++.|++.. ...+.+.+++. .|+++++++.
T Consensus 5 i~~~~~~e~~~~~~~~--~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 5 INSERELQAFENIEDD--IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATF-----DSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred cCCHHHHHHHhcccCC--eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEEC-----cHHHHHHcCCC-CCcEEEeCCC
Confidence 445555788886 433 34454554433333456677888888889997764 34577888875 6999999887
Q ss_pred CCceeee-cCCCChhHHHHHHHhcc
Q 010886 341 GVKPVVY-YGSFNNSRLSEVMEQNK 364 (498)
Q Consensus 341 ~~~~~~y-~g~~~~~~L~~fi~~~~ 364 (498)
++.++.| .|..+.+.|.+||..++
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHhc
Confidence 7777889 88889999999998764
No 176
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.03 E-value=2.9e-05 Score=65.91 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=65.6
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecCCCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEE----
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lf---- 337 (498)
+++.+.++.|+... +.++|.+|.+........+..+|..+++++.|+++. ...+.+.+++ .|++++|
T Consensus 5 i~s~~~l~~f~~~~--~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 5 LRTEAEFEKFLSDD--DASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred cCCHHHHHHHhccC--CcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEechh
Confidence 44445577787632 334555555433333456677888888888998864 3457788998 5889999
Q ss_pred --eCCCCceeeecCCCChhHHHHHHHhc
Q 010886 338 --KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 338 --k~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
++.++..+.|.|+++.+.|.+||..+
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 44556677899999989999999876
No 177
>smart00594 UAS UAS domain.
Probab=98.02 E-value=1.5e-05 Score=69.74 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=65.8
Q ss_pred cCCCcEEEEEecCCCCCCCCChHH-HH--HHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGA-WK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~-~~--~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~ 227 (498)
++++..+|.|+++||..|+.+.-. |. ++.+.++....+-.+|.+.... ..++++++ +.++|++.++.+..
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~------~~~~P~~~~l~~~~ 97 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYK------LDSFPYVAIVDPRT 97 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcC------cCCCCEEEEEecCC
Confidence 668899999999999999987643 32 3445566556677778775533 46899988 99999999995432
Q ss_pred -cC-CCCcccccCCCCHHHHHHHH
Q 010886 228 -KS-SDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 228 -~~-~~~~~~Y~G~r~~~~Iv~fv 249 (498)
.. ..-.....|..+++++++++
T Consensus 98 g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 98 GQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CceeEEEeccccCCCCHHHHHHhh
Confidence 10 00122567999999998875
No 178
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.02 E-value=2.7e-05 Score=65.55 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=58.7
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCC-hhH
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN-NSR 355 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~-~~~ 355 (498)
++|.|+++.+ ....+.+..++..+.+.+.|+.++... ..+++++++|.++||+++|++++.....|.|..+ .++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~ 99 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADS 99 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHH
Confidence 4555655532 234577777888877677777765321 3779999999999999999987567788999886 888
Q ss_pred HHHHH
Q 010886 356 LSEVM 360 (498)
Q Consensus 356 L~~fi 360 (498)
|.+||
T Consensus 100 l~~~i 104 (104)
T cd03004 100 ILEFI 104 (104)
T ss_pred HHhhC
Confidence 98885
No 179
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=5.7e-06 Score=91.69 Aligned_cols=53 Identities=19% Similarity=0.346 Sum_probs=46.9
Q ss_pred ccccccccCCCCCC----CHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcC
Q 010886 36 PPSHYDALGIKPYS----SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (498)
Q Consensus 36 ~~d~y~ilgv~~~a----~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~ 88 (498)
..+-|+||.++-+. ..+.||++|++||.+|||||||...|.|..+++|||.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 55789999998542 336799999999999999999999999999999999997
No 180
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.96 E-value=0.00011 Score=72.02 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=82.8
Q ss_pred hhhhhhhcCCCcEEEEEEec---CCCCCcHHHHHHHHhccccceEEEEEeccccc-HHHHHHcCCCCCCEEEEEeCCCCc
Q 010886 268 GKNFLAKTGPHKVKVIFFSK---TGERASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVK 343 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~-~~l~~~f~V~~~Pti~lfk~~~~~ 343 (498)
.++|+...+++.|+|-|+.+ +|+...|.|..+...+++--.-..|...||+. +.++.+|||.++|||.+||. ..
T Consensus 34 ddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~ 111 (468)
T KOG4277|consen 34 DDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DH 111 (468)
T ss_pred hHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--Ce
Confidence 46788777788999999985 56778899988666555443345555667766 88999999999999999985 35
Q ss_pred eeeecCCCChhHHHHHHHhcccCCCCcccccc
Q 010886 344 PVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT 375 (498)
Q Consensus 344 ~~~y~g~~~~~~L~~fi~~~~~~~vp~lt~~~ 375 (498)
...|.|++++++|.+|...-.-+++-.+....
T Consensus 112 a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ 143 (468)
T KOG4277|consen 112 AIDYRGGREKDAIIEFAHRCAAAIIEPINENQ 143 (468)
T ss_pred eeecCCCccHHHHHHHHHhcccceeeecChhH
Confidence 67899999999999999887777666666533
No 181
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.94 E-value=1.9e-05 Score=61.40 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=51.8
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCccc
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~ 235 (498)
+..|+++||++|+++.+.+++. .+.+..+|.++++. ..++++.++ +.++|++.+. |. .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~------~~~vP~~~~~--~~-------~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLG------QRGVPVIVIG--HK-------I 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhC------CCcccEEEEC--CE-------E
Confidence 4679999999999988877652 36788899986543 234667778 8899999875 42 3
Q ss_pred ccCCCCHHHHHHHH
Q 010886 236 FEGELSVDAVTDWF 249 (498)
Q Consensus 236 Y~G~r~~~~Iv~fv 249 (498)
..| .+.+.|.+|+
T Consensus 61 ~~g-~~~~~i~~~i 73 (74)
T TIGR02196 61 IVG-FDPEKLDQLL 73 (74)
T ss_pred Eee-CCHHHHHHHh
Confidence 445 4677887775
No 182
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.94 E-value=1.8e-05 Score=69.25 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=51.0
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEccc------chhhhHHHHhCCC------------Cccc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD------IRLATHLAERKPI------------GQIF 212 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~------~~~~~~l~~~~~~------------~~~~ 212 (498)
.+++++|.||+.||+.|.+..|.++++.++++.. +.+..|+..+ .....+.++++++ .+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 4689999999999999999999999999999854 5666676521 1111223344332 1135
Q ss_pred ceeeeeEEEEeCC
Q 010886 213 FRRGLPSLVAFPP 225 (498)
Q Consensus 213 ~I~~~PTl~~f~~ 225 (498)
.+.++|+.+++.+
T Consensus 102 ~v~~~P~~~vid~ 114 (126)
T cd03012 102 GNQYWPALYLIDP 114 (126)
T ss_pred CCCcCCeEEEECC
Confidence 5778888887743
No 183
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.90 E-value=4.6e-05 Score=71.89 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=56.7
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCC-----------CcccceeeeeEE
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI-----------GQIFFRRGLPSL 220 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~-----------~~~~~I~~~PTl 220 (498)
.+++++|.||++||+.|++..|...++.+... +.+..|+.++.....+.++++++ .+.|+|.+.|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 56789999999999999999999999876543 33444443322222233333332 135569999987
Q ss_pred EEeC-CCCcCCCCcccccCCC-CHHHHHHHHH
Q 010886 221 VAFP-PGCKSSDCMTRFEGEL-SVDAVTDWFA 250 (498)
Q Consensus 221 ~~f~-~g~~~~~~~~~Y~G~r-~~~~Iv~fv~ 250 (498)
+++- +|.. .+.|.. +.+.+-+.+.
T Consensus 151 ~lID~~G~I------~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 151 VLLDQDGKI------RAKGLTNTREHLESLLE 176 (189)
T ss_pred EEECCCCeE------EEccCCCCHHHHHHHHH
Confidence 7765 4533 455543 3445544443
No 184
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.89 E-value=7.4e-05 Score=63.27 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=64.9
Q ss_pred hhhhhhhcCCCc-EEEEEEecC---CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCC--
Q 010886 268 GKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-- 341 (498)
Q Consensus 268 ~~~fl~~~~~~~-~~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~-- 341 (498)
+++.+.+ .++ ++|.|+++. +....+.+..++..+.+...++.++........++++|+|.++|++++|+++.
T Consensus 10 ~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 87 (109)
T cd03002 10 FDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA 87 (109)
T ss_pred HHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence 4555543 234 455555542 23346777778887776677777764432246799999999999999999875
Q ss_pred --CceeeecCCCChhHHHHHHH
Q 010886 342 --VKPVVYYGSFNNSRLSEVME 361 (498)
Q Consensus 342 --~~~~~y~g~~~~~~L~~fi~ 361 (498)
..+..|.|..+.++|.+||.
T Consensus 88 ~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 88 SKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred cccccccccCccCHHHHHHHhC
Confidence 34578899999999999973
No 185
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.85 E-value=3.7e-05 Score=63.96 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=55.7
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcc-cchhhhHHHHhCCCCcccceeeeeEEEEeCCCCc
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~-~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~ 228 (498)
+++.+|.|+++||++|+.+.|...++++.+...+.+..+|.. .++. +...++.. +..+|++.++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~----~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD---LAAEFGVA----VRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH---HHHHHhhh----hccCCeEEEEeCcch
Confidence 778999999999999999999999999999887788888886 3433 55555411 668899998888754
No 186
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.84 E-value=6.8e-05 Score=64.70 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=57.5
Q ss_pred EEEEEEecC---CCCCcHHHHHHHHhccccceEEEEEecccc-cHHHH-HHcCCCCCCEEEEEeCCCCceeeecCCCChh
Q 010886 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEE-SSIWW-NTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (498)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~-~~~l~-~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~ 354 (498)
++|.|+++- ++...|.+..+|..+++.+.|+.|+ |+ ...++ ++|+|.++||+++|+++ ..+..|.|.++.+
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd---~d~~~~l~~~~~~I~~~PTl~lf~~g-~~~~~y~G~~~~~ 107 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAIN---CWWPQGKCRKQKHFFYFPVIHLYYRS-RGPIEYKGPMRAP 107 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEE---CCCChHHHHHhcCCcccCEEEEEECC-ccceEEeCCCCHH
Confidence 455566542 2335677888888887777777775 43 35688 58999999999999875 4578899999999
Q ss_pred HHHHHH
Q 010886 355 RLSEVM 360 (498)
Q Consensus 355 ~L~~fi 360 (498)
.|..|+
T Consensus 108 ~i~~~~ 113 (113)
T cd03006 108 YMEKFV 113 (113)
T ss_pred HHHhhC
Confidence 998873
No 187
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.84 E-value=2.2e-05 Score=69.15 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCcccc----cCCCcEEEEEecCCCCCCCCChHHH---HHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeee
Q 010886 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (498)
Q Consensus 145 nF~~~v----~~~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~ 217 (498)
+|++.+ .++++++|.||++||++|+.|.... .++++.+.....+..++.+.. ...+.. . ..++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~t--d~~~~~--~------g~~v 80 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETT--DKNLSP--D------GQYV 80 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccC--CCCcCc--c------Cccc
Confidence 455544 7799999999999999999998753 234455544333445554311 011111 1 3589
Q ss_pred eEEEEeCCCCcCCCCcc------ccc-CCCCHHHHHHHHHHH
Q 010886 218 PSLVAFPPGCKSSDCMT------RFE-GELSVDAVTDWFATA 252 (498)
Q Consensus 218 PTl~~f~~g~~~~~~~~------~Y~-G~r~~~~Iv~fv~k~ 252 (498)
||++++........... .|. .+-+.+.|+.=+++.
T Consensus 81 PtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~a 122 (130)
T cd02960 81 PRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKKA 122 (130)
T ss_pred CeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHHH
Confidence 99999965433211111 111 345566777666654
No 188
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.79 E-value=0.00011 Score=62.52 Aligned_cols=92 Identities=12% Similarity=0.177 Sum_probs=60.2
Q ss_pred cccchhhhhhhhhcCCCcEEE-EEEecC---CCCCcHHHHHHHHhccc------cceEEEEEecccc-cHHHHHHcCCCC
Q 010886 262 YTKESMGKNFLAKTGPHKVKV-IFFSKT---GERASPFVRQISRNYWA------YASFAFVLWREEE-SSIWWNTFEVES 330 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~v-l~f~~~---~~~~~~~~~~~A~~~~~------~~~f~~v~~~~~~-~~~l~~~f~V~~ 330 (498)
+++++ +++.+.. +++++ .|+++- +....+.+..++..+++ .+.++.++ |+ ..+++++|+|++
T Consensus 6 l~~~~-f~~~i~~---~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd---~d~~~~l~~~~~v~~ 78 (108)
T cd02996 6 LTSGN-IDDILQS---AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVD---CDKESDIADRYRINK 78 (108)
T ss_pred cCHhh-HHHHHhc---CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEE---CCCCHHHHHhCCCCc
Confidence 44443 4555542 23544 455542 23345666667665432 24555554 43 378999999999
Q ss_pred CCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 010886 331 APAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (498)
Q Consensus 331 ~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi 360 (498)
+|++++|+++......|.|..+.++|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999998664567889999999999885
No 189
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.79 E-value=6.3e-05 Score=62.44 Aligned_cols=87 Identities=13% Similarity=0.236 Sum_probs=68.9
Q ss_pred CcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCC
Q 010886 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (498)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~ 225 (498)
.+.++..+++++|-|+.++|+ .....|.++|..+.+.+.||.++-. +++++++ +.. |++.+|++
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~------~~~~~~~------~~~-~~i~l~~~ 73 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK------EVAKKLK------VKP-GSVVLFKP 73 (97)
T ss_pred HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH------HHHHHcC------CCC-CceEEeCC
Confidence 445678899999999999987 5678999999999888888877732 2666665 544 99999987
Q ss_pred CCcCCCCcccccCCCCHHHHHHHHHH
Q 010886 226 GCKSSDCMTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 226 g~~~~~~~~~Y~G~r~~~~Iv~fv~k 251 (498)
.... ...|.|..+.++|.+|+..
T Consensus 74 ~~~~---~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 FEEE---PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cccC---CccCCCCCCHHHHHHHHHh
Confidence 5332 4579999999999999864
No 190
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.78 E-value=0.00011 Score=61.55 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=56.7
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHH
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L 356 (498)
++|.|+++.+ ....+.+..+|..+.+.+.|+.++..+ .+.++++++|+++||+++|+++ .....|.|..+.+.|
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~~~~~~l 97 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVFPSG-MNPEKYYGDRSKESL 97 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCCccCEEEEEcCC-CCcccCCCCCCHHHH
Confidence 5555665432 234577778888887766777765322 3779999999999999999865 345678999999988
Q ss_pred HHH
Q 010886 357 SEV 359 (498)
Q Consensus 357 ~~f 359 (498)
.+|
T Consensus 98 ~~f 100 (101)
T cd03003 98 VKF 100 (101)
T ss_pred Hhh
Confidence 887
No 191
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.77 E-value=0.00013 Score=62.64 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=76.0
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHH-hhc--cceEEEEEccc--chhhhHHHHhCCCCccc
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGD--IRLATHLAERKPIGQIF 212 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~-l~~--~i~va~Vdc~~--~~~~~~l~~~~~~~~~~ 212 (498)
.+.|+.-+|+++|...+.+||.|=.-.- --.-..+|.++|++ .+. .+-||.|...+ ++...+|+++|++.
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayP--yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~--- 80 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAYP--YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID--- 80 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S---
T ss_pred eeeccceehhheeccCceEEEEEeccCC--CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC---
Confidence 4789999999999999999999975431 12345789999944 432 35677777652 23346699999944
Q ss_pred ceeeeeEEEEeCCCCcCCCCcccc--cCCCCHHHHHHHHHHH
Q 010886 213 FRRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (498)
Q Consensus 213 ~I~~~PTl~~f~~g~~~~~~~~~Y--~G~r~~~~Iv~fv~k~ 252 (498)
-..||.+++|..|.. ++..| .|+.++++|..|++.+
T Consensus 81 -ke~fPv~~LF~~~~~---~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 81 -KEDFPVIYLFVGDKE---EPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -CCC-SEEEEEESSTT---SEEEE-TCS-S-HHHHHHHHHHT
T ss_pred -cccCCEEEEecCCCC---CCccCCccCCccHHHHHHHHHhC
Confidence 368999999996644 37778 8999999999999886
No 192
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.76 E-value=0.00015 Score=70.66 Aligned_cols=98 Identities=9% Similarity=-0.068 Sum_probs=67.1
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHH-HhCCCC------------
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLA-ERKPIG------------ 209 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~--------~~~~~~l~-~~~~~~------------ 209 (498)
.+++++|.|+++||+.|....|.++++.+++++. +.|..|+|+. .......+ +++++.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 4689999999999999999999999999999876 6888898841 12223333 343321
Q ss_pred ---cccc-------------eeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 210 ---QIFF-------------RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 210 ---~~~~-------------I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
..|+ |++.||..++-.+++. ...|.|..+.++|.+.+++.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV---v~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV---VERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE---EEEECCCCCHHHHHHHHHHH
Confidence 0011 2345777776443332 35678888888888887765
No 193
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.73 E-value=5.5e-05 Score=60.35 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=55.0
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCccccc
Q 010886 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (498)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~ 237 (498)
|++++++|++|..+...+++++..+. +.+-.+|.++ ..++ .+|| |.+.||+++ +|+. .|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~---~~~~-~~yg------v~~vPalvI--ng~~------~~~ 62 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIED---FEEI-EKYG------VMSVPALVI--NGKV------VFV 62 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTT---HHHH-HHTT-------SSSSEEEE--TTEE------EEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccC---HHHH-HHcC------CCCCCEEEE--CCEE------EEE
Confidence 55689999999999999999999884 6666666653 3345 8888 999999944 6754 788
Q ss_pred C-CCCHHHHHHHHH
Q 010886 238 G-ELSVDAVTDWFA 250 (498)
Q Consensus 238 G-~r~~~~Iv~fv~ 250 (498)
| ..+.+.|.+|++
T Consensus 63 G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 63 GRVPSKEELKELLE 76 (76)
T ss_dssp SS--HHHHHHHHHH
T ss_pred ecCCCHHHHHHHhC
Confidence 9 778888888874
No 194
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.66 E-value=0.00013 Score=66.12 Aligned_cols=42 Identities=7% Similarity=-0.154 Sum_probs=36.5
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~ 194 (498)
.+++++|.|+|.||+ |..-.|.++++.+++++. +.+..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 368999999999999 999999999999999754 677788764
No 195
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.63 E-value=0.00034 Score=58.34 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=58.3
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHH
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L 356 (498)
+++.++++-+ ....+.+..++..+.+.+.++.+... +..+++++|+|.+.|++++|+++...+..|.|+.+.++|
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l 98 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAI 98 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHH
Confidence 4555555422 22356677777777777777776532 236799999999999999998775667889999999999
Q ss_pred HHHH
Q 010886 357 SEVM 360 (498)
Q Consensus 357 ~~fi 360 (498)
.+|+
T Consensus 99 ~~~~ 102 (103)
T cd03001 99 VSAA 102 (103)
T ss_pred HHHh
Confidence 9997
No 196
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.62 E-value=0.0003 Score=66.89 Aligned_cols=56 Identities=5% Similarity=0.070 Sum_probs=44.6
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHHhCC
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKP 207 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~--------~~~~~~l~~~~~ 207 (498)
.+++++|.|+|.||+.|.+-.|..+++.+++++. +.|..|+|++ .......+++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~ 102 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK 102 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcC
Confidence 3689999999999999999999999999999865 6888898842 223444566665
No 197
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.62 E-value=9.2e-05 Score=66.28 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCCcEEEEEecC-CCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCC------------Cccccee--
Q 010886 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI------------GQIFFRR-- 215 (498)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~------------~~~~~I~-- 215 (498)
.+++++|.||+. ||++|+.-.|...++++.++.. +.+..|..+.+....+.+++++. .+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 578899999999 9999999999999999887765 67777777755444555555442 2356687
Q ss_pred -------eeeEEEEeCCCCc
Q 010886 216 -------GLPSLVAFPPGCK 228 (498)
Q Consensus 216 -------~~PTl~~f~~g~~ 228 (498)
++|+++++-.++.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~ 126 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGK 126 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSB
T ss_pred cccccCCeecEEEEEECCCE
Confidence 9999877655443
No 198
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.61 E-value=0.00053 Score=56.88 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=56.6
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccc--cceEEEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWA--YASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~--~~~f~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~ 353 (498)
+++.|+++.+ ....+.+..++..+.. .+.++.+. ++ ...++++|+|.+.|++++|++++. +..|.|..+.
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~~~ 91 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVD---ATAEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGRDL 91 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEE---ccchHHHHHhCCCCcCCEEEEecCCCc-ceeecCCCCH
Confidence 3444544432 2234566667776665 35555543 33 478999999999999999998765 7789999999
Q ss_pred hHHHHHHHhc
Q 010886 354 SRLSEVMEQN 363 (498)
Q Consensus 354 ~~L~~fi~~~ 363 (498)
+.|..||.++
T Consensus 92 ~~l~~~i~~~ 101 (102)
T TIGR01126 92 EAIVEFVNEK 101 (102)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 199
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.61 E-value=0.00042 Score=59.16 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=64.6
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecCCCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEE----
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lf---- 337 (498)
+++.+.++.|+... +..++|.+|.+........+..+|..+++++.|+++. ...+.+++++. .|.+++|
T Consensus 5 i~s~~ele~f~~~~-~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 5 LQTLKQVQEFLRDG-DDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred cCCHHHHHHHHhcC-CCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEC-----hHHHHHhcCCC-CCceEEECcHH
Confidence 44555577777542 1234555555433333455677888888899998764 24577888885 5788888
Q ss_pred --eCCCCceeeecCC-CChhH-HHHHHHhc
Q 010886 338 --KDPGVKPVVYYGS-FNNSR-LSEVMEQN 363 (498)
Q Consensus 338 --k~~~~~~~~y~g~-~~~~~-L~~fi~~~ 363 (498)
+..++...+|.|. .+.++ |.+||+.|
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 4567778899988 67666 99999875
No 200
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.59 E-value=0.00013 Score=57.49 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=39.7
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHh--CCCCcccceeeeeEEEEeCCCC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER--KPIGQIFFRRGLPSLVAFPPGC 227 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~--~~~~~~~~I~~~PTl~~f~~g~ 227 (498)
++.|+++||++|+++.+.+++.. +.+-.+|.+++........+ ++ +.++|++ ++.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~------~~~vP~i-~~~~g~ 61 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNG------NMTVPTV-KFADGS 61 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCC------CceeCEE-EECCCe
Confidence 57899999999999998876553 34557888755432222222 25 8899998 566664
No 201
>PLN02412 probable glutathione peroxidase
Probab=97.58 E-value=0.00029 Score=65.09 Aligned_cols=43 Identities=9% Similarity=-0.093 Sum_probs=38.5
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~ 194 (498)
.+++++|.|+++||+.|++-.|.+.++.+++++. +.|..|+|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3589999999999999999999999999999876 788889885
No 202
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.58 E-value=0.0018 Score=71.22 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=112.1
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeC-CCCcCCC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP-PGCKSSD 231 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~-~g~~~~~ 231 (498)
+.+.|+.|..+.|..|..+....+++| .+.+.+++-..|..++. .++++|+ |...|++.++. +|...
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~---~~~~~~~------v~~~P~~~i~~~~~~~~-- 433 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEP---ESETLPK------ITKLPTVALLDDDGNYT-- 433 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccch---hhHhhcC------CCcCCEEEEEeCCCccc--
Confidence 556788888989999988888888887 56677888888877443 4888888 88999999995 55332
Q ss_pred CcccccCCCCHHHHHHHHHHHhh-cCCcccccccchhhhhhhhhcCCCcEEE-EEEecCC-CCCc--HHHHHHHHhcccc
Q 010886 232 CMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKV-IFFSKTG-ERAS--PFVRQISRNYWAY 306 (498)
Q Consensus 232 ~~~~Y~G~r~~~~Iv~fv~k~~~-~~P~~~~it~~~~~~~fl~~~~~~~~~v-l~f~~~~-~~~~--~~~~~~A~~~~~~ 306 (498)
...|.|--.=.++-+|+...+. +.+... + +++ ..+.+...+ ....+ +|.+..| .|+. ..+..+|... ..
T Consensus 434 -~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~-l-~~~-~~~~i~~~~-~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~ 507 (555)
T TIGR03143 434 -GLKFHGVPSGHELNSFILALYNAAGPGQP-L-GEE-LLEKIKKIT-KPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PN 507 (555)
T ss_pred -ceEEEecCccHhHHHHHHHHHHhcCCCCC-C-CHH-HHHHHHhcC-CCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CC
Confidence 4588886666666666655321 122221 2 222 222333221 11223 3345433 3432 2223344432 23
Q ss_pred ceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 010886 307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (498)
Q Consensus 307 ~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi 360 (498)
+..-.+.. .+-++++++|+|.+.|++++ +++ +.+.|..+.++|.+||
T Consensus 508 i~~~~i~~--~~~~~~~~~~~v~~vP~~~i---~~~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 508 VEAEMIDV--SHFPDLKDEYGIMSVPAIVV---DDQ--QVYFGKKTIEEMLELI 554 (555)
T ss_pred ceEEEEEC--cccHHHHHhCCceecCEEEE---CCE--EEEeeCCCHHHHHHhh
Confidence 43333322 22378999999999999888 232 4567888888888775
No 203
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.55 E-value=0.0003 Score=60.02 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=55.3
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhcccc-ceEEEEEecccccHHHHH-HcCCCCCCEEEEEeCCCCceeeecCC-CCh
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIVFLKDPGVKPVVYYGS-FNN 353 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~-~f~V~~~Pti~lfk~~~~~~~~y~g~-~~~ 353 (498)
++|.|+++.+ ....+.+..++..+++. +.++.+... .+...++. .++|.++||+++|++++..+..|.|+ .+.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d-~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~ 102 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD-GEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDV 102 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC-ccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCH
Confidence 5555655432 23456677777777643 566666432 11245665 59999999999999877778889995 788
Q ss_pred hHHHHHH
Q 010886 354 SRLSEVM 360 (498)
Q Consensus 354 ~~L~~fi 360 (498)
++|..||
T Consensus 103 ~~l~~f~ 109 (109)
T cd02993 103 DSLLMFV 109 (109)
T ss_pred HHHHhhC
Confidence 9998885
No 204
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.50 E-value=0.00025 Score=59.67 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=55.5
Q ss_pred EEEEEEecC---CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHH
Q 010886 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (498)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L 356 (498)
++|.|+++- |....|.+..++..+.+ +.++.+... .+...++++|+|.++||+++|+++ ....|.|..+.+.|
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~-~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~~~l 96 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEES-SIKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTLDSL 96 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECC-CCCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCHHHH
Confidence 455555542 33456778888887753 555555321 124789999999999999999875 56789999999999
Q ss_pred HHHH
Q 010886 357 SEVM 360 (498)
Q Consensus 357 ~~fi 360 (498)
.+||
T Consensus 97 ~~f~ 100 (100)
T cd02999 97 AAFY 100 (100)
T ss_pred HhhC
Confidence 9885
No 205
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.45 E-value=0.00079 Score=55.57 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=54.8
Q ss_pred EEEEEEecC---CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHH
Q 010886 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (498)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L 356 (498)
++|.|+++- +....+.+..++..+.+.+.++.++.. ....++++|+|.+.|++++|+++ .....+.|..+.+.|
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~~~~~l 91 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD--AQPQIAQQFGVQALPTVYLFAAG-QPVDGFQGAQPEEQL 91 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc--CCHHHHHHcCCCCCCEEEEEeCC-EEeeeecCCCCHHHH
Confidence 444455542 223356667677777666666666532 23789999999999999999854 334467898889999
Q ss_pred HHHHH
Q 010886 357 SEVME 361 (498)
Q Consensus 357 ~~fi~ 361 (498)
.+||+
T Consensus 92 ~~~l~ 96 (96)
T cd02956 92 RQMLD 96 (96)
T ss_pred HHHhC
Confidence 99874
No 206
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.44 E-value=0.0008 Score=60.97 Aligned_cols=42 Identities=14% Similarity=-0.063 Sum_probs=37.6
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL 193 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc 193 (498)
.+++++|.|+|+||+.|++-.|.++++.+++++. +.|..|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 3678999999999999999999999999999864 68888987
No 207
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.43 E-value=0.0019 Score=56.98 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=66.4
Q ss_pred hhhhhhhcCCCcEEEEEEecCCCC------CcHHHHHHHHhccc-cceEEEEEecccccHHHHHHcCCCCCCEEEEEeCC
Q 010886 268 GKNFLAKTGPHKVKVIFFSKTGER------ASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~~~~------~~~~~~~~A~~~~~-~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~ 340 (498)
++.|+.... ..|+|+..+... ....+..++.+|.+ +++++.|+.. +.+.++.+|||.+.||+++|+++
T Consensus 27 ~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD--~~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 27 LDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE--QSEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred HHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC--CCHHHHHHcCCccCCEEEEEECC
Confidence 678886544 577777643211 23455668888863 4778887643 24789999999999999999975
Q ss_pred CCceeeecCCCChhHHHHHHHhcccC
Q 010886 341 GVKPVVYYGSFNNSRLSEVMEQNKLQ 366 (498)
Q Consensus 341 ~~~~~~y~g~~~~~~L~~fi~~~~~~ 366 (498)
. ..-...|..+.+.+.+||+...-.
T Consensus 102 k-~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 102 N-YRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred E-EEEEEeCcCCHHHHHHHHHHHhcC
Confidence 4 334557888999999999976443
No 208
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.43 E-value=0.00068 Score=62.58 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=65.6
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhc-cceEEEEEcccc--------hhhhHHHHhCCC------------Cc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI--------RLATHLAERKPI------------GQ 210 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~-~i~va~Vdc~~~--------~~~~~l~~~~~~------------~~ 210 (498)
.++++||.|+++||+.|.+..|...++.+++++ .+.+..|.++.. ....+..+++++ .+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 568899999999999999999999999999974 478888887531 111122223222 22
Q ss_pred ccceeeeeEEEEeCCCCcCCCCcccccC-----------CCCHHHHHHHHHHH
Q 010886 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-----------ELSVDAVTDWFATA 252 (498)
Q Consensus 211 ~~~I~~~PTl~~f~~g~~~~~~~~~Y~G-----------~r~~~~Iv~fv~k~ 252 (498)
.|+|.+.|+++++.++++. .|.| ..+.+++.+-+...
T Consensus 104 ~~~v~~~P~~~lid~~G~v-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKL-----VYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCeE-----EEeecccCCcccccccccHHHHHHHHHHH
Confidence 4559999999999654432 3432 23556777777665
No 209
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.43 E-value=0.00053 Score=72.95 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=66.7
Q ss_pred cccchhhhhhhhhcCCCc-EEEEEEecC---CCCCcHHHHHHHHhcccc-ceEEEEEecccccHHHHHHcCCCCCCEEEE
Q 010886 262 YTKESMGKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~-~~vl~f~~~---~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~~f~V~~~Pti~l 336 (498)
++..+ +++.+.....++ ++|.|+.+- |+...|.+..+|.++.+. +.|+.++.........+++|+|.++||+++
T Consensus 356 L~~~n-f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 356 LSRPG-IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred CCHHH-HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 45444 566654112233 455566552 233457777788887654 667777533211233457899999999999
Q ss_pred EeCCCCceeeec-CCCChhHHHHHHHh
Q 010886 337 LKDPGVKPVVYY-GSFNNSRLSEVMEQ 362 (498)
Q Consensus 337 fk~~~~~~~~y~-g~~~~~~L~~fi~~ 362 (498)
|+++...++.|. |.++.+.|..||+.
T Consensus 435 Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 435 FPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred EECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999877788997 58999999999985
No 210
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.33 E-value=0.001 Score=55.31 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=55.0
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccc---cceEEEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCC
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWA---YASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~ 352 (498)
+++.|+++-+ ....+.+..++.++.+ .+.++.+. ++ ...++++|+|.+.|++++|+++. ....|.|..+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd---~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~ 94 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVD---CTQHRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTRD 94 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEE---CCCChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCCC
Confidence 5666666522 2345677778777765 45555553 43 36799999999999999997654 5567899999
Q ss_pred hhHHHHHH
Q 010886 353 NSRLSEVM 360 (498)
Q Consensus 353 ~~~L~~fi 360 (498)
.+.|.+||
T Consensus 95 ~~~l~~~i 102 (102)
T cd03005 95 LDSLKEFV 102 (102)
T ss_pred HHHHHhhC
Confidence 99898875
No 211
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.32 E-value=0.00057 Score=65.78 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccc--------hhhhHHHHhCCCCcccceeeeeEEEEe
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~--------~~~~~l~~~~~~~~~~~I~~~PTl~~f 223 (498)
.++.-|+.||.+.|+.|+.++|....+++.+. +.|-.|+.+.. .....++++++ |..+|++.+.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~------v~~~Pal~Lv 190 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLG------VKVTPALFLV 190 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcC------CCcCCEEEEE
Confidence 36778999999999999999999999999985 44555555421 11244788888 9999999999
Q ss_pred CCCCcCCCCcccccCCCCHHHHHH
Q 010886 224 PPGCKSSDCMTRFEGELSVDAVTD 247 (498)
Q Consensus 224 ~~g~~~~~~~~~Y~G~r~~~~Iv~ 247 (498)
..+... ....-.|..+.++|.+
T Consensus 191 ~~~~~~--~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 191 NPNTKK--WYPVSQGFMSLDELED 212 (215)
T ss_pred ECCCCe--EEEEeeecCCHHHHHH
Confidence 876532 0112348899888876
No 212
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.31 E-value=0.0011 Score=55.20 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=55.0
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhcccc--ceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCC-CceeeecCCCCh
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVVYYGSFNN 353 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~~--~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~-~~~~~y~g~~~~ 353 (498)
++|.++++.+ ....+.+..++..+.+. +.++.+ |++..+++..+++.++|++++|+++. .....|.|..+.
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~i---d~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~ 97 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKM---DATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTL 97 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEE---eCcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCcCH
Confidence 4555665532 23456677777776653 445554 34445688899999999999999866 456789999999
Q ss_pred hHHHHHH
Q 010886 354 SRLSEVM 360 (498)
Q Consensus 354 ~~L~~fi 360 (498)
..|.+||
T Consensus 98 ~~l~~fi 104 (104)
T cd02995 98 EDLIKFI 104 (104)
T ss_pred HHHHhhC
Confidence 9999885
No 213
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.31 E-value=0.00028 Score=58.38 Aligned_cols=97 Identities=13% Similarity=0.243 Sum_probs=76.7
Q ss_pred CCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCccccee----eee
Q 010886 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR----GLP 218 (498)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~----~~P 218 (498)
..+|..+++...-+||.|...--..-..| ..+.++|+.++|.+.++-|||.+. ....||+++. |. .-|
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~-e~kKLCKKlK------v~~~~kp~~ 80 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDS-ESRKLCKKLK------VDPSSKPKP 80 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCCh-HHHHHHHHHc------cCCCCCCCc
Confidence 46788889999999999987654444444 489999999999999999999953 2466999998 55 334
Q ss_pred -EEEEeCCCCcCCCCcccccCCCCHHHHHHHHHH
Q 010886 219 -SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 219 -Tl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k 251 (498)
+|+-|++|..+ .+|+-..+..+++.|++.
T Consensus 81 ~~LkHYKdG~fH----kdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDGDFH----TEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCCCcc----ccccchhhHHHHHHHhhC
Confidence 36778898764 589999999999999864
No 214
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.30 E-value=0.0012 Score=54.95 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=50.2
Q ss_pred CcHHHHHHHHhccc--cceEEEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 010886 292 ASPFVRQISRNYWA--YASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (498)
Q Consensus 292 ~~~~~~~~A~~~~~--~~~f~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi 360 (498)
..+.+..++..+.. .+.++.+.. .. ...++++|+|.+.|++++|++++.....|.|..+.+.|.+||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~id~--~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 36 LAPEYEKLAAVFANEDDVVIAKVDA--DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred hChHHHHHHHHhCCCCCEEEEEEEC--CCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 45677777777652 344455432 23 467999999999999999998766677889999999998885
No 215
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.28 E-value=0.0016 Score=55.79 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=55.2
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccc-cceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~ 355 (498)
++|.|+++-+ ....|.+..++..+.+ .+.++.+... ..+.++++++|.+.||+++|+++ .....+.|..+.+.
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~~~~ 103 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HERRLARKLGAHSVPAIVGIING-QVTFYHDSSFTKQH 103 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--ccHHHHHHcCCccCCEEEEEECC-EEEEEecCCCCHHH
Confidence 4555555422 2345677777777764 3566666422 23679999999999999999864 34445588888899
Q ss_pred HHHHHHh
Q 010886 356 LSEVMEQ 362 (498)
Q Consensus 356 L~~fi~~ 362 (498)
|.+||.+
T Consensus 104 l~~~i~~ 110 (111)
T cd02963 104 VVDFVRK 110 (111)
T ss_pred HHHHHhc
Confidence 9999874
No 216
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.22 E-value=0.0015 Score=53.38 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=55.6
Q ss_pred cEEEEEEecCC---CCCcHHHHHHHHhc--cccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 010886 279 KVKVIFFSKTG---ERASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (498)
Q Consensus 279 ~~~vl~f~~~~---~~~~~~~~~~A~~~--~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~ 353 (498)
.++|.++++.+ ....+.+..++..+ ...+.|+.+... ....++++|+|...|++++|++++.....|.|..+.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~ 94 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--ANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTL 94 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--chHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCH
Confidence 35555555432 22345666677666 456666666422 237899999999999999998765566778898888
Q ss_pred hHHHHHH
Q 010886 354 SRLSEVM 360 (498)
Q Consensus 354 ~~L~~fi 360 (498)
++|.+|+
T Consensus 95 ~~i~~~~ 101 (101)
T cd02961 95 ESLVEFI 101 (101)
T ss_pred HHHHhhC
Confidence 8888774
No 217
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.22 E-value=0.0019 Score=53.85 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=56.6
Q ss_pred EEEEEEecC---CCCCcHHHHHHHHhccc-cceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 010886 280 VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (498)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~ 355 (498)
++|.|+++- +....|.+..++..+.. .+.++.++.. +...++++|+|.++||+++|+++. ...|.|..+.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~G~~~~~~ 94 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--QEPGLSGRFFVTALPTIYHAKDGV--FRRYQGPRDKED 94 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--CCHhHHHHcCCcccCEEEEeCCCC--EEEecCCCCHHH
Confidence 777777753 23345667777765543 3566666432 236799999999999999998754 467899999999
Q ss_pred HHHHHHh
Q 010886 356 LSEVMEQ 362 (498)
Q Consensus 356 L~~fi~~ 362 (498)
|.+||++
T Consensus 95 l~~~i~~ 101 (101)
T cd02994 95 LISFIEE 101 (101)
T ss_pred HHHHHhC
Confidence 9999863
No 218
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.21 E-value=0.0021 Score=53.48 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=58.1
Q ss_pred hhhhhhhcCCCcEEEEEEecCC---CCCcHHHHHHHHhcc--ccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCC
Q 010886 268 GKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~ 342 (498)
++..++.. ..++|.|+++-+ ....+.+..++..+. ..+.++.+.....+...++++++|.++|++++|+++.
T Consensus 10 ~~~~~~~~--~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~- 86 (104)
T cd02997 10 FRKFLKKE--KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK- 86 (104)
T ss_pred HHHHHhhC--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC-
Confidence 44455432 235555555422 223456666666665 3345555554332257899999999999999998653
Q ss_pred ceeeecCCCChhHHHHHH
Q 010886 343 KPVVYYGSFNNSRLSEVM 360 (498)
Q Consensus 343 ~~~~y~g~~~~~~L~~fi 360 (498)
....|.|..+.+.|.+||
T Consensus 87 ~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 87 FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred eeEEeCCCCCHHHHHhhC
Confidence 456789998988888875
No 219
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.14 E-value=0.00036 Score=56.01 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=41.1
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh--hhHHHHhCCCCcccceeeeeEEEEeCCCC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~--~~~l~~~~~~~~~~~I~~~PTl~~f~~g~ 227 (498)
++.|+++||++|+++.+.+++.. ..+...+..||-+++.. ...+.+..+ +.++|++ |.+|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g------~~~vP~v--~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITG------QRTVPNI--FINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhC------CCCCCeE--EECCE
Confidence 47899999999999999998876 33334555555543221 123556667 8899998 45663
No 220
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.14 E-value=0.0031 Score=54.09 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=57.5
Q ss_pred hhhhhhhcCCCcEEEEEEecC----CC--CCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCC
Q 010886 268 GKNFLAKTGPHKVKVIFFSKT----GE--RASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~----~~--~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~ 341 (498)
++++++. +.++|++|... .+ ...|.+..+|.+|.+.+.|+.+...+ .++++.+|+|.+.||+++|+++.
T Consensus 20 ~~~~~~~---~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 20 LDDWLAA---GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred HHHHHhC---CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCcCCEEEEEECCE
Confidence 5566642 23566666532 12 23577788999887777787876433 46899999999999999999753
Q ss_pred CceeeecCCCChhHHH
Q 010886 342 VKPVVYYGSFNNSRLS 357 (498)
Q Consensus 342 ~~~~~y~g~~~~~~L~ 357 (498)
....+.|..+.+.+.
T Consensus 95 -~v~~~~G~~~~~e~~ 109 (111)
T cd02965 95 -YVGVLAGIRDWDEYV 109 (111)
T ss_pred -EEEEEeCccCHHHHh
Confidence 333557877776654
No 221
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.13 E-value=0.00057 Score=58.98 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCCcEEEEEecC-CCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCC------------Cccccee--
Q 010886 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI------------GQIFFRR-- 215 (498)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~------------~~~~~I~-- 215 (498)
.+++.+|.||+. ||++|+...+.++++.++++.. +.+..|..+.........++++. .+.|.+.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 568999999999 9999999999999999999864 68888888754433344444332 1234466
Q ss_pred ----eeeEEEEeCCCCc
Q 010886 216 ----GLPSLVAFPPGCK 228 (498)
Q Consensus 216 ----~~PTl~~f~~g~~ 228 (498)
.+|++.++-++..
T Consensus 104 ~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTSEESEEEEEEETTSB
T ss_pred cCCceEeEEEEECCCCE
Confidence 7777777765543
No 222
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0018 Score=57.91 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=62.7
Q ss_pred cEEEEEEec-C--CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 010886 279 KVKVIFFSK-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (498)
Q Consensus 279 ~~~vl~f~~-~--~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~ 355 (498)
.|+|-|++. + |+...|.+..++.+|.+.++|+.+++.+ ..+++.+|+|+..||+++|++++ +...+.|..+.+.
T Consensus 63 PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe-~~d~~vG~~~~~~ 139 (150)
T KOG0910|consen 63 PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGE-KVDRFVGAVPKEQ 139 (150)
T ss_pred CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCE-EeeeecccCCHHH
Confidence 356666654 2 2346788888888898999999987432 46799999999999999999754 3345678888899
Q ss_pred HHHHHHhc
Q 010886 356 LSEVMEQN 363 (498)
Q Consensus 356 L~~fi~~~ 363 (498)
|..||++.
T Consensus 140 l~~~i~k~ 147 (150)
T KOG0910|consen 140 LRSLIKKF 147 (150)
T ss_pred HHHHHHHH
Confidence 99999863
No 223
>PLN02309 5'-adenylylsulfate reductase
Probab=97.13 E-value=0.0016 Score=69.24 Aligned_cols=99 Identities=10% Similarity=0.158 Sum_probs=66.2
Q ss_pred cccchhhhhhhhhcCCCc-EEEEEEecC---CCCCcHHHHHHHHhcccc-ceEEEEEecccccHHHHH-HcCCCCCCEEE
Q 010886 262 YTKESMGKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV 335 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~-~~vl~f~~~---~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~-~f~V~~~Pti~ 335 (498)
++.++ +++.+.....++ ++|.|+.+- |....+.+..+|..+.+. +.|+.++.. ++...+++ +|+|.++||++
T Consensus 350 Lt~~n-fe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d-~~~~~la~~~~~I~~~PTil 427 (457)
T PLN02309 350 LSRAG-IENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD-GDQKEFAKQELQLGSFPTIL 427 (457)
T ss_pred CCHHH-HHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC-CcchHHHHhhCCCceeeEEE
Confidence 44443 455543222233 566666652 233456777788877543 666766532 12356775 69999999999
Q ss_pred EEeCCCCceeeecC-CCChhHHHHHHHh
Q 010886 336 FLKDPGVKPVVYYG-SFNNSRLSEVMEQ 362 (498)
Q Consensus 336 lfk~~~~~~~~y~g-~~~~~~L~~fi~~ 362 (498)
+|++++..++.|.| ..+.++|..||+.
T Consensus 428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 428 LFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 99998878899975 6899999999986
No 224
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.10 E-value=0.00053 Score=67.97 Aligned_cols=103 Identities=15% Similarity=0.262 Sum_probs=68.8
Q ss_pred EEEecC-CCCccccc---CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 138 FNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 138 V~~Lt~-~nF~~~v~---~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
|.+|+. ++|-+.|. ....++|.||.|.+..|..+...+..+|+.+.. ++|.+|....- . ++.+|+
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~---~-~~~~f~------ 195 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC---P-ASENFP------ 195 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC---C-TTTTS-------
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc---C-cccCCc------
Confidence 778865 67777773 345688999999999999999999999998754 78999988721 1 556677
Q ss_pred eeeeeEEEEeCCCCcCCCCcc---cccC-CCCHHHHHHHHHHH
Q 010886 214 RRGLPSLVAFPPGCKSSDCMT---RFEG-ELSVDAVTDWFATA 252 (498)
Q Consensus 214 I~~~PTl~~f~~g~~~~~~~~---~Y~G-~r~~~~Iv~fv~k~ 252 (498)
++.+|||++|++|... .+.. ..-| ..+.++|-.|+.+.
T Consensus 196 ~~~LPtllvYk~G~l~-~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 196 DKNLPTLLVYKNGDLI-GNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp TTC-SEEEEEETTEEE-EEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred ccCCCEEEEEECCEEE-EeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 8899999999999642 1111 1112 45677777777665
No 225
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.10 E-value=0.0014 Score=59.23 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=51.7
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc---ceEEEEEcccc----------------------hhhhHHHHhC
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDI----------------------RLATHLAERK 206 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~---i~va~Vdc~~~----------------------~~~~~l~~~~ 206 (498)
.++++.+.|-|-||+.|+.+.|...++-++++.. +-|.-|+-+.+ ...++|+++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 3589999999999999999999999998888765 45555554422 1223344444
Q ss_pred CCCcccceeeeeEEEEeCCCC
Q 010886 207 PIGQIFFRRGLPSLVAFPPGC 227 (498)
Q Consensus 207 ~~~~~~~I~~~PTl~~f~~g~ 227 (498)
+ |++.|++++..+.+
T Consensus 112 ~------v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 E------VKGIPALVILKPDG 126 (157)
T ss_pred c------cCcCceeEEecCCC
Confidence 4 99999998887654
No 226
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.06 E-value=0.0015 Score=56.05 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=77.4
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHH---hhccceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL---LEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~---l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|.++|.+|++....+.-+..+.|+.|- .-..+.+.+.++|++ ++|.+.++.+|.++.. ...+.+| +
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fg------l 69 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLG------K 69 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcC------C
Confidence 456888888877777777777777332 236788999999999 8999999999999543 3778888 6
Q ss_pred ee--eeEEEEeCCCCcCCCCccc-ccCCCCHHHHHHHHHHH
Q 010886 215 RG--LPSLVAFPPGCKSSDCMTR-FEGELSVDAVTDWFATA 252 (498)
Q Consensus 215 ~~--~PTl~~f~~g~~~~~~~~~-Y~G~r~~~~Iv~fv~k~ 252 (498)
++ +|.+.+....... ... +.+..++++|.+|+.+.
T Consensus 70 ~~~~~P~i~i~~~~~~~---Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 70 TPADLPVIAIDSFRHMY---LFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred CHhHCCEEEEEcchhcC---cCCCCccccCHHHHHHHHHHH
Confidence 65 9999998764311 112 56889999999999876
No 227
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.03 E-value=0.0017 Score=57.35 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=41.2
Q ss_pred CCcEEEEEe-cCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCC
Q 010886 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (498)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~ 207 (498)
+++++|.|+ +.||+.|....|.+.++.+.+.+. +.+..|..+......+.+++++
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 678999999 589999999999999999988753 6777777664433344455544
No 228
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.03 E-value=0.0018 Score=63.92 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=86.3
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccccce---EEEEEeccccc-HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCC
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWAYAS---FAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~---f~~v~~~~~~~-~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~ 352 (498)
++|-||++=| ....|.+..+|..++.... .++. .+||+. ..|+++|.|++|||+.+|+.+....-.|.|.++
T Consensus 16 vfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg-~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~Rs 94 (375)
T KOG0912|consen 16 VFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG-KVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRS 94 (375)
T ss_pred EeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE-EcccchhhHHhhhhccccCceeeeeeccchhhhhhccchh
Confidence 4555666522 2345777777776654332 2222 346765 779999999999999999987766667899999
Q ss_pred hhHHHHHHHhcccCCCCcccccchhhhccCCCCCcCCCCCCceeEEEEEeC-CCchhhHHHHHHHHHHHHhhcccccc
Q 010886 353 NSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQETLLSDDES 429 (498)
Q Consensus 353 ~~~L~~fi~~~~~~~vp~lt~~~~~~~~c~~~~~~~~~k~~~~~lcvi~~~-~~~~~~~~~~~~l~~~a~~~~~~~~~ 429 (498)
.+.|.+||++..-..+-++.+.+.....-. +.| ...+.++. .++++++ .++++|..++++-.+
T Consensus 95 VeaL~efi~kq~s~~i~Ef~sl~~l~n~~~------p~K----~~vIgyF~~kdspey~----~~~kva~~lr~dc~f 158 (375)
T KOG0912|consen 95 VEALIEFIEKQLSDPINEFESLDQLQNLDI------PSK----RTVIGYFPSKDSPEYD----NLRKVASLLRDDCVF 158 (375)
T ss_pred HHHHHHHHHHHhccHHHHHHhHHHHHhhhc------ccc----ceEEEEeccCCCchHH----HHHHHHHHHhhccEE
Confidence 999999999765444556666554442221 122 24455554 4555553 456778877765444
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.002 Score=63.74 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=68.6
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecC---CCCCcHHHHHHHHhccccceEEEEEecccc-cHHHHHHcCCCCCCEEEEE
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFL 337 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~-~~~l~~~f~V~~~Pti~lf 337 (498)
+|..++....+.......++|.|..+- |....|.+..++.+|++...++.|+ |+ ++.++.+|||.+.|++++|
T Consensus 28 vT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN---~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 28 VTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVN---CDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred chHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEec---CCcchhHHHHhCcCcCCeEEEe
Confidence 455554444444332223455555542 2335678888889999998888885 43 3889999999999999999
Q ss_pred eCCCCcee-eecCCCChhHHHHHHHhc
Q 010886 338 KDPGVKPV-VYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 338 k~~~~~~~-~y~g~~~~~~L~~fi~~~ 363 (498)
+++ .|+ -|.|....+.|..|+...
T Consensus 105 ~dG--qpVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 105 KDG--QPVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred eCC--cCccccCCCCcHHHHHHHHHHh
Confidence 975 454 478888888999999875
No 230
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.00 E-value=0.0021 Score=53.64 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=51.4
Q ss_pred cHHHHHHHHhccccceEEEEEecccccHHHHHHcCCC--CCCEEEEEeCCCCceeeec-CCCChhHHHHHHHh
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVYY-GSFNNSRLSEVMEQ 362 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~--~~Pti~lfk~~~~~~~~y~-g~~~~~~L~~fi~~ 362 (498)
.+.++.+|.++++.+.|+.++..+ ...+++.||+. +.|++++++..+.....+. |.++.+.|.+|+++
T Consensus 31 ~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~ 101 (103)
T cd02982 31 RERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVED 101 (103)
T ss_pred HHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHh
Confidence 466677999998888888886433 35699999999 8999999998433333344 44588999999975
No 231
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0013 Score=54.91 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=43.1
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcCCh
Q 010886 41 DALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP 90 (498)
Q Consensus 41 ~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~d~ 90 (498)
.||||+++++.+.||+|+|+.-...|||+. ++.=--.+|++|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999996 5555667899999998643
No 232
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.95 E-value=0.0011 Score=57.42 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=65.2
Q ss_pred cCCCcEEEEEecC----CCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeC--
Q 010886 151 HDSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP-- 224 (498)
Q Consensus 151 ~~~~~~lV~FYap----wC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~-- 224 (498)
++.+..+|.+|+| ||..|+..- .=+++.+-+.....+-..|++.... ..++..++ +++||++.++.
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~------~~~~P~~~~l~~~ 86 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKPEG-YRVSQALR------ERTYPFLAMIMLK 86 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCChHH-HHHHHHhC------CCCCCEEEEEEec
Confidence 6789999999999 888886532 1133445555556777888875433 45888888 99999998883
Q ss_pred CCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 225 PGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 225 ~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+++.. -.....|.+++++++..+...
T Consensus 87 ~~~~~--vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 87 DNRMT--IVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred CCceE--EEEEEeCCCCHHHHHHHHHHH
Confidence 22110 123577999999999988765
No 233
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.91 E-value=0.011 Score=48.52 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=56.0
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHH
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L 356 (498)
+++.++++.+ ....+.+..++..+.+.+.|+.+.... ...++++|+|...|++++|+++. ....+.|..+.+.|
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~l 93 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFKNGK-EVDRSVGALPKAAL 93 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCcCCEEEEEeCCc-EeeeecCCCCHHHH
Confidence 4444555432 223456666776776667777775332 36789999999999999997543 33456788888999
Q ss_pred HHHHHhc
Q 010886 357 SEVMEQN 363 (498)
Q Consensus 357 ~~fi~~~ 363 (498)
.+|++++
T Consensus 94 ~~~l~~~ 100 (101)
T TIGR01068 94 KQLINKN 100 (101)
T ss_pred HHHHHhh
Confidence 9999864
No 234
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.91 E-value=0.0059 Score=51.34 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=54.4
Q ss_pred cEEEEEEecCC---CCCcHHHHHHHHhcccc---ceEEEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCC
Q 010886 279 KVKVIFFSKTG---ERASPFVRQISRNYWAY---ASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (498)
Q Consensus 279 ~~~vl~f~~~~---~~~~~~~~~~A~~~~~~---~~f~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~ 351 (498)
.++|.|+++.+ ....+.+..++..+++. +.++.+ +++ ...++++|+|.+.|++++|+++ ....|.|..
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~v---d~~~~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~~ 91 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKL---DATAYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPR 91 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEE---ECccCHhHHhhcCCccccEEEEEcCC--CceeecCCC
Confidence 35555555522 23456777777776432 334444 343 3679999999999999999753 346689999
Q ss_pred ChhHHHHHHHh
Q 010886 352 NNSRLSEVMEQ 362 (498)
Q Consensus 352 ~~~~L~~fi~~ 362 (498)
+.+.|.+|+++
T Consensus 92 ~~~~l~~~~~~ 102 (104)
T cd03000 92 TKDDIVEFANR 102 (104)
T ss_pred CHHHHHHHHHh
Confidence 99999999875
No 235
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.91 E-value=0.0027 Score=62.50 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=66.7
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccc--------hhhhHHHHhCCCCcccceeeeeEEEEeC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAFP 224 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~--------~~~~~l~~~~~~~~~~~I~~~PTl~~f~ 224 (498)
++.-||.||...|++|++++|....+|+.+. +.+-.|+.+.. +....+++++| |+.+|++++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~Pal~Lv~ 221 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLG------VKYFPALYLVN 221 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcC------CccCceEEEEE
Confidence 5588999999999999999999999999887 55555655533 11233677888 99999999988
Q ss_pred CCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 225 PGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 225 ~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
.+... ....=.|..+.++|.+=+...
T Consensus 222 ~~t~~--~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 222 PKSQK--MSPLAYGFISQDELKERILNV 247 (256)
T ss_pred CCCCc--EEEEeeccCCHHHHHHHHHHH
Confidence 76442 001123999999998876654
No 236
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.90 E-value=0.0036 Score=52.56 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHhccccceEEEEEecccc--cHHHHHHcCCCCCCEEEEEeC-CCCceeeecCCCChhHHHHHHH
Q 010886 299 ISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVME 361 (498)
Q Consensus 299 ~A~~~~~~~~f~~v~~~~~~--~~~l~~~f~V~~~Pti~lfk~-~~~~~~~y~g~~~~~~L~~fi~ 361 (498)
++..+.+.+.++.++....+ ...++++|+|.+.|++++|++ ++.....+.|.++.+.|.++|+
T Consensus 39 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 39 VQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 44445445666666643221 367999999999999999986 4556677789999998888763
No 237
>PRK09381 trxA thioredoxin; Provisional
Probab=96.86 E-value=0.007 Score=51.21 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=57.8
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHH
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L 356 (498)
++|.|+++.+ ....+.+..++..+.+.+.++.+.... ...++++|+|.+.|++++|+++ .....+.|..+.+.|
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l 100 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNG-EVAATKVGALSKGQL 100 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCC-eEEEEecCCCCHHHH
Confidence 4555555432 234577777888887777777775432 3678999999999999999754 334456888888999
Q ss_pred HHHHHhc
Q 010886 357 SEVMEQN 363 (498)
Q Consensus 357 ~~fi~~~ 363 (498)
..||..+
T Consensus 101 ~~~i~~~ 107 (109)
T PRK09381 101 KEFLDAN 107 (109)
T ss_pred HHHHHHh
Confidence 9998764
No 238
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.81 E-value=0.007 Score=55.98 Aligned_cols=97 Identities=13% Similarity=-0.011 Sum_probs=62.4
Q ss_pred CCcEEEEEe-cCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhC-------C------------CCcc
Q 010886 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK-------P------------IGQI 211 (498)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~-------~------------~~~~ 211 (498)
+++++|.|| +.||++|..-.|.++++++++... +.+..|.++.........+.. + +.+.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 578999999 899999999999999999999754 677777776432111111110 1 1224
Q ss_pred ccee------eeeEEEEeCCCCcCCCCcccc----cCCCCHHHHHHHHHHH
Q 010886 212 FFRR------GLPSLVAFPPGCKSSDCMTRF----EGELSVDAVTDWFATA 252 (498)
Q Consensus 212 ~~I~------~~PTl~~f~~g~~~~~~~~~Y----~G~r~~~~Iv~fv~k~ 252 (498)
|.+. ..|+.+++.+.... ...+ ...++.++|++.+.+.
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I---~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGII---RHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeE---EEEEecCCCCCCCHHHHHHHHHHh
Confidence 5565 56788888754432 1222 2245778888888654
No 239
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.81 E-value=0.0059 Score=54.00 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=62.4
Q ss_pred CcEEEEEEecCC-C-------CCcHHHHHHHHhcccc-ceEEEEEecccccHHHHHHcCCCC--CCEEEEEeCCCCceee
Q 010886 278 HKVKVIFFSKTG-E-------RASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVV 346 (498)
Q Consensus 278 ~~~~vl~f~~~~-~-------~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~~f~V~~--~Pti~lfk~~~~~~~~ 346 (498)
+.++|+.|-++. + .....++.+|.++++. +.|+++...+ ...+.+.||+.+ +|+++++...+.+...
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~ 97 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGFGYPAMVAINFRKMKFAT 97 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCccCCCEEEEEecccCcccc
Confidence 458999887631 1 1123446689999998 8888887543 245899999964 8999999875433333
Q ss_pred ecCCCChhHHHHHHHhcccC
Q 010886 347 YYGSFNNSRLSEVMEQNKLQ 366 (498)
Q Consensus 347 y~g~~~~~~L~~fi~~~~~~ 366 (498)
+.|+++.++|.+|++...-.
T Consensus 98 ~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 98 LKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred ccCccCHHHHHHHHHHHHcC
Confidence 68999999999999875433
No 240
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.79 E-value=0.011 Score=50.99 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=62.1
Q ss_pred hhhhhhhcCCCcEEEEEEec---CCCCCcHHHHHHH-H--hccccceEEEEEeccc---ccHHHHHHcCCC--CCCEEEE
Q 010886 268 GKNFLAKTGPHKVKVIFFSK---TGERASPFVRQIS-R--NYWAYASFAFVLWREE---ESSIWWNTFEVE--SAPAIVF 336 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~---~~~~~~~~~~~~A-~--~~~~~~~f~~v~~~~~---~~~~l~~~f~V~--~~Pti~l 336 (498)
+++.+.... ..++=|.- .++ ....+..+| . +-.+++-++.|...|- ++.+|.++|++. .+|.+++
T Consensus 14 FdKvi~kf~---~~LVKFD~ayPyGe-Khd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~L 89 (126)
T PF07912_consen 14 FDKVIPKFK---YVLVKFDVAYPYGE-KHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYL 89 (126)
T ss_dssp HHHHGGGSS---EEEEEEEESS--CH-HHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEE
T ss_pred hhheeccCc---eEEEEEeccCCCcc-hHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEE
Confidence 556665432 45555541 221 134455555 2 2346778899987764 457899999996 4899999
Q ss_pred EeCCCCceeee--cCCCChhHHHHHHHhccc
Q 010886 337 LKDPGVKPVVY--YGSFNNSRLSEVMEQNKL 365 (498)
Q Consensus 337 fk~~~~~~~~y--~g~~~~~~L~~fi~~~~~ 365 (498)
|+.+.+.|+.| +|+++.+.|.+|+++|.-
T Consensus 90 F~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 90 FVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp EESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 99888889999 899999999999999843
No 241
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.79 E-value=0.0089 Score=53.63 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=58.1
Q ss_pred CcEEEEEE-ecC---CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 010886 278 HKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (498)
Q Consensus 278 ~~~~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~ 353 (498)
++++|+.| ++- |....+.+..++..+.+...|..+.........++++|+|.+.|++++|.+++.....+.|..+.
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~ 99 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPK 99 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCH
Confidence 34555544 432 22345666677777766677888764332235789999999999999996545444456888888
Q ss_pred hHHHHHHHhc
Q 010886 354 SRLSEVMEQN 363 (498)
Q Consensus 354 ~~L~~fi~~~ 363 (498)
+.|.++|...
T Consensus 100 ~~l~~~l~~l 109 (142)
T cd02950 100 QVLAQNLDAL 109 (142)
T ss_pred HHHHHHHHHH
Confidence 8888888753
No 242
>PRK10996 thioredoxin 2; Provisional
Probab=96.78 E-value=0.0083 Score=53.59 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=50.4
Q ss_pred cHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhc
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
.+.+..++.++.+.+.|+.++.. +...++++|+|.+.|++++|++ +.....+.|..+.+.|.+|+++.
T Consensus 71 ~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~~Ptlii~~~-G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 71 APIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRSIPTIMIFKN-GQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCccCEEEEEEC-CEEEEEEcCCCCHHHHHHHHHHh
Confidence 35556677766666666666532 2478999999999999999985 33444568988999999999863
No 243
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.77 E-value=0.0055 Score=59.27 Aligned_cols=82 Identities=11% Similarity=0.119 Sum_probs=58.6
Q ss_pred cEEEEEEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeee-cCCCChh
Q 010886 279 KVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY-YGSFNNS 354 (498)
Q Consensus 279 ~~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y-~g~~~~~ 354 (498)
.++|.|+++-+ ....|.+..++.++.+.+.++.++.. ...+++++|+|.++||+++|+++. .+.| .|..+.+
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PTl~~f~~G~--~v~~~~G~~s~e 129 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPTLLLFDKGK--MYQYEGGDRSTE 129 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCEEEEEECCE--EEEeeCCCCCHH
Confidence 46666776533 22356677788888776667666422 237899999999999999999643 3444 6778999
Q ss_pred HHHHHHHhcc
Q 010886 355 RLSEVMEQNK 364 (498)
Q Consensus 355 ~L~~fi~~~~ 364 (498)
+|.+|+..+.
T Consensus 130 ~L~~fi~~~~ 139 (224)
T PTZ00443 130 KLAAFALGDF 139 (224)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 244
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0078 Score=59.77 Aligned_cols=107 Identities=12% Similarity=0.180 Sum_probs=80.6
Q ss_pred eEEEecCCCCcccccC---CCcEEEEEecC----CCCCCCCChHHHHHHHHHhhc--------cceEEEEEcccchhhhH
Q 010886 137 AFNVVTSEDFPSIFHD---SKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEG--------IANTGMVELGDIRLATH 201 (498)
Q Consensus 137 ~V~~Lt~~nF~~~v~~---~~~~lV~FYap----wC~~C~~l~p~~~~~A~~l~~--------~i~va~Vdc~~~~~~~~ 201 (498)
.|..+++++|...+.. +-..+|+|.|- .|.-|++...||.-+|..... .+=++.||-++-++
T Consensus 41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~--- 117 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ--- 117 (331)
T ss_pred CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH---
Confidence 4899999999999843 44577888873 599999999999999987632 24689999996554
Q ss_pred HHHhCCCCcccceeeeeEEEEeCCCCcCCCCccccc---CCCCHHHHHHHHHHH
Q 010886 202 LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE---GELSVDAVTDWFATA 252 (498)
Q Consensus 202 l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~---G~r~~~~Iv~fv~k~ 252 (498)
+-+.++ ++..|++.+|.+....+.....+. -+..+|+|.+|+.++
T Consensus 118 ~Fq~l~------ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 118 VFQQLN------LNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred HHHHhc------ccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 888888 999999999966433222233332 234599999999886
No 245
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.67 E-value=0.015 Score=48.94 Aligned_cols=91 Identities=20% Similarity=0.155 Sum_probs=56.8
Q ss_pred hhhhhhhcCCCcEEEEEE-ecCC---CCCcHHHHHHHHhccccceEEEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCC
Q 010886 268 GKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGV 342 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~ 342 (498)
+++.+... .++++|+.| ++-+ ....|.+..++..+ ..+.|+.++..... ...++++|+|++.||+++|+++ .
T Consensus 6 ~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G-~ 82 (103)
T cd02985 6 LDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG-E 82 (103)
T ss_pred HHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC-e
Confidence 44445432 244555544 4422 22356777788777 56777777643321 1479999999999999999864 3
Q ss_pred ceeeecCCCChhHHHHHHHh
Q 010886 343 KPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 343 ~~~~y~g~~~~~~L~~fi~~ 362 (498)
....+.|. ....|.+-+..
T Consensus 83 ~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 83 KIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred EEEEEeCC-CHHHHHHHHHh
Confidence 44566775 45667666553
No 246
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.62 E-value=0.0072 Score=56.63 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=58.4
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHH-hhc--cceEEEEEcccchh-hhHHHH--------hCC-----------C
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGDIRL-ATHLAE--------RKP-----------I 208 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~-l~~--~i~va~Vdc~~~~~-~~~l~~--------~~~-----------~ 208 (498)
.+++++|+|+|.||+.|..-+|..++++.. +.- .=....||.++... .....+ .++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 389999999999999999999999999543 211 01236677664211 011111 122 1
Q ss_pred CcccceeeeeEE-EEeCCCCcCCCCcccccCCCCHHHHHH
Q 010886 209 GQIFFRRGLPSL-VAFPPGCKSSDCMTRFEGELSVDAVTD 247 (498)
Q Consensus 209 ~~~~~I~~~PTl-~~f~~g~~~~~~~~~Y~G~r~~~~Iv~ 247 (498)
.+.|++.++|+- .++-..+.. ...+.|..+.+++.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkV---v~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKV---KFVKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcE---EEEEeCCCCHHHHHH
Confidence 125669999776 455443332 345669988887766
No 247
>PHA02278 thioredoxin-like protein
Probab=96.61 E-value=0.015 Score=49.28 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=52.3
Q ss_pred EEEEEEecC---CCCCcHHHHHHHHhccccceEEEEEecccc--cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChh
Q 010886 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (498)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~--~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~ 354 (498)
++|.|+++- |....|.+..++.++.....|..++..... ..+++++|+|.+.||+++|+++. ......|..+.+
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~~~~ 95 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQVTPM 95 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCCCHH
Confidence 444455542 233457777777654444567777644321 25799999999999999999753 334557877877
Q ss_pred HHHHH
Q 010886 355 RLSEV 359 (498)
Q Consensus 355 ~L~~f 359 (498)
.|.++
T Consensus 96 ~l~~~ 100 (103)
T PHA02278 96 QLQEL 100 (103)
T ss_pred HHHhh
Confidence 77765
No 248
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.60 E-value=0.0089 Score=55.97 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=34.9
Q ss_pred CCc-EEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcc
Q 010886 153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (498)
Q Consensus 153 ~~~-~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~ 194 (498)
+++ +++.++|.||+.|++-.|.++++.+++++. +.|..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 454 455668999999999999999999999865 788888874
No 249
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.60 E-value=0.0043 Score=57.21 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=43.6
Q ss_pred CCcEEEEEecCC-CCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCC
Q 010886 153 SKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (498)
Q Consensus 153 ~~~~lV~FYapw-C~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~ 207 (498)
+++++|.||+.| |+.|.+-.|.+.++++++. .+.|..|+++........+++++
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 678999999999 9999999999999999984 46788888875444455666665
No 250
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.59 E-value=0.0042 Score=53.37 Aligned_cols=61 Identities=21% Similarity=0.130 Sum_probs=45.9
Q ss_pred EEEEEeCC----CchhhHHHHHHHHHHHHhhcccccccccccCCCchHHHHhcc-CCceEEEEEeCccCchhhhhhhhhh
Q 010886 397 YCVILAGR----LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR-NKRLTFAWLDGEAQDVSFIMLISLF 471 (498)
Q Consensus 397 lcvi~~~~----~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~f~wvd~~~q~~~~~~~~~~~ 471 (498)
++++++.- +.++.+++++.++++|+ +|| ++ +.|+|+|......
T Consensus 17 l~~~~~~~~~~~~~~~~~~~~~~~~~vAk----------------------~fk~gk-i~Fv~~D~~~~~~--------- 64 (111)
T cd03073 17 LVVAYYNVDYSKNPKGTNYWRNRVLKVAK----------------------DFPDRK-LNFAVADKEDFSH--------- 64 (111)
T ss_pred eEEEEEeccccCChhHHHHHHHHHHHHHH----------------------HCcCCe-EEEEEEcHHHHHH---------
Confidence 56665522 44567889999999998 899 55 9999999987666
Q ss_pred heeeeccC--C--ceeeeeecc
Q 010886 472 YVDFFLHS--D--LFVLWLLFP 489 (498)
Q Consensus 472 ~~~~~~~~--~--~~~~~~~~~ 489 (498)
..++|.-+ + .|++.|.+-
T Consensus 65 ~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 65 ELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHcCCCcccCCCCEEEEEeC
Confidence 55666655 4 999999773
No 251
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.59 E-value=0.011 Score=55.59 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=61.1
Q ss_pred CCCcEEEEEe-cCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchh----------------------hhHHHHhCC
Q 010886 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL----------------------ATHLAERKP 207 (498)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~----------------------~~~l~~~~~ 207 (498)
.+++++|.|| +.||+.|..-.|.+.++.+++++. +.|..|.++.... ...+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3568999999 999999999999999999998754 5677777663211 113444444
Q ss_pred CCccccee------eeeEEEEeC-CCCcCCCCcccc--c--CCCCHHHHHHHHHHH
Q 010886 208 IGQIFFRR------GLPSLVAFP-PGCKSSDCMTRF--E--GELSVDAVTDWFATA 252 (498)
Q Consensus 208 ~~~~~~I~------~~PTl~~f~-~g~~~~~~~~~Y--~--G~r~~~~Iv~fv~k~ 252 (498)
|. ..|+..++. +|... ..+ . ..+.+++|++.+...
T Consensus 110 ------v~~~~~g~~~p~tfiID~~G~I~----~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 ------VLIEEAGLADRGTFVIDPEGVIQ----AVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred ------CcccCCCceeeEEEEECCCCEEE----EEEEeCCCCCCCHHHHHHHHHHh
Confidence 64 468877775 45432 111 1 246888888877543
No 252
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.58 E-value=0.0056 Score=67.41 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=62.9
Q ss_pred CCcEEE-EEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCC
Q 010886 153 SKPWLI-QVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (498)
Q Consensus 153 ~~~~lV-~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~ 231 (498)
+++.-| -|++|+|++|.+..-.++++|.... .+..-.||.++.+ +++++|+ |.++|++++ +|+.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~---~~~~~~~------v~~vP~~~i--~~~~--- 539 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFP---DLKDEYG------IMSVPAIVV--DDQQ--- 539 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccH---HHHHhCC------ceecCEEEE--CCEE---
Confidence 455545 4579999999999989988888754 4677888888554 5999999 999999876 5543
Q ss_pred CcccccCCCCHHHHHHHH
Q 010886 232 CMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 232 ~~~~Y~G~r~~~~Iv~fv 249 (498)
.+.|..+.++|++|+
T Consensus 540 ---~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 540 ---VYFGKKTIEEMLELI 554 (555)
T ss_pred ---EEeeCCCHHHHHHhh
Confidence 678988999999886
No 253
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.53 E-value=0.0077 Score=54.40 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCCcEEEEEecC-CCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCC
Q 010886 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (498)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~ 207 (498)
.+++++|.|++. ||+.|....+.+.++++.+++. +.+..|+.+......+.+++++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 457899999975 6888999999999999999764 6777777764444444455544
No 254
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.53 E-value=0.0061 Score=59.68 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=63.9
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch------hhhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR------LATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~------~~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
++.-|+.||.+.|++|++++|....+++...=.+.-..+|....+ .....+++++ |..+|++++...+
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~PAl~Lv~~~ 216 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLG------VKYFPALMLVDPK 216 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcC------CcccceEEEEECC
Confidence 557899999999999999999999999988633333344432111 1223456666 9999999999876
Q ss_pred CcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 227 ~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
... ....=.|..+.++|.+=+...
T Consensus 217 t~~--~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 217 SGS--VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred CCc--EEEEeeccCCHHHHHHHHHHH
Confidence 542 011124899999998766544
No 255
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.48 E-value=0.017 Score=49.61 Aligned_cols=94 Identities=10% Similarity=0.167 Sum_probs=56.2
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEe
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLK 338 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk 338 (498)
+++.+.+++.+.. ...++|.|+.+.+ ....+.+..++.++. ...|..++... ..+++++|+|.+.||+++|+
T Consensus 9 i~~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 9 VSDEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEK--APFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred eCCHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEccc--CHHHHHHCCCccCCEEEEEE
Confidence 4443334444432 2334555555432 223566677777764 46777776332 46799999999999999999
Q ss_pred CCCCceee-----e--cCCCChhHHHHHH
Q 010886 339 DPGVKPVV-----Y--YGSFNNSRLSEVM 360 (498)
Q Consensus 339 ~~~~~~~~-----y--~g~~~~~~L~~fi 360 (498)
++...... . .++++.++++.|+
T Consensus 84 ~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 84 NGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 86432111 1 1345667777775
No 256
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.44 E-value=0.0052 Score=47.29 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=36.8
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeEEEE
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PTl~~ 222 (498)
++.|+++||++|.++.+.+++. .+.+..+|.+.+.. ...+.+..+ +.++|+|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNG------YRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcC------CcccCEEEE
Confidence 5789999999999987776652 25677788775432 122333335 779999975
No 257
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.43 E-value=0.00067 Score=58.84 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=45.8
Q ss_pred cCCCcEEEEEec-------CCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEe
Q 010886 151 HDSKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (498)
Q Consensus 151 ~~~~~~lV~FYa-------pwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f 223 (498)
+++++.+|.|++ +||+.|....|..+++-....+...+..|...+.+.-.+-...|.....++|+++|||+-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 456889999995 5999999999999999888666667777776522110000011110112449999999988
Q ss_pred CCC
Q 010886 224 PPG 226 (498)
Q Consensus 224 ~~g 226 (498)
..+
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 766
No 258
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.43 E-value=0.0072 Score=51.92 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=67.1
Q ss_pred EecCCCCcccccCCCcEEEEEe----cCCCCCCCCChHHHHHHHHHhh-ccceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 140 VVTSEDFPSIFHDSKPWLIQVY----SDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FY----apwC~~C~~l~p~~~~~A~~l~-~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
++|.+|..... ..+.++.|| ++.-..-..+.+.+.++|+.++ +.+.++.+|.++.. ...+.+| +
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fg------l 71 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFG------L 71 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcC------C
Confidence 46666665553 233344444 2222233568899999999999 79999999999543 3677888 6
Q ss_pred e--e--eeEEEEeCCCCcCCCCcccccCCC-CHHHHHHHHHHH
Q 010886 215 R--G--LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATA 252 (498)
Q Consensus 215 ~--~--~PTl~~f~~g~~~~~~~~~Y~G~r-~~~~Iv~fv~k~ 252 (498)
+ + +|++.++..+... ....+.. +.++|.+|+.+.
T Consensus 72 ~~~~~~~P~~~i~~~~~~K----Y~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 72 DFSGGEKPVVAIRTAKGKK----YVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CcccCCCCEEEEEeCCCCc----cCCCcccCCHHHHHHHHHHh
Confidence 5 4 9999998754321 1246778 999999999764
No 259
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.39 E-value=0.019 Score=48.15 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=55.9
Q ss_pred ccchhhhhhhhhcCCCcEEEEEE-ecCC---CCCcHHHHHHHHhcccc-ceEEEEEecccccHHHHHHcCCCCCCEEEEE
Q 010886 263 TKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (498)
Q Consensus 263 t~~~~~~~fl~~~~~~~~~vl~f-~~~~---~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lf 337 (498)
++.+.++..++. ++++++.| ++-+ ....+.+..++..+.+. ..|+.+.. +..+++++|+|+..||+++|
T Consensus 5 ~~~~~~~~~i~~---~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~---d~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLSN---KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEA---DTIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHcc---CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeC---CCHHHHHHcCCCcCcEEEEE
Confidence 344445666642 33555544 4422 22345666677666532 45666543 35678999999999999999
Q ss_pred eCCCCceeeecCCCChhHHHHHHHh
Q 010886 338 KDPGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 338 k~~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
+++... ....| .+...|.++|.+
T Consensus 79 ~~g~~~-~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGELV-AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred ECCEEE-EEEec-CChHHHHHHHhh
Confidence 865322 23345 377888888764
No 260
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.37 E-value=0.0044 Score=50.27 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=54.4
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCccc
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~ 235 (498)
++.|+.|||++|++....+++++.++. .+.+..+|.+++.. ..++.+..+.+ +..+|+|. .+|..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~----~~~vP~if--i~g~~------- 68 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKP----VETVPQIF--VDQKH------- 68 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCC----CCcCCEEE--ECCEE-------
Confidence 678999999999999999999887653 46788888875421 22344444422 67999975 46643
Q ss_pred ccCCCCHHHHHHHHHHH
Q 010886 236 FEGELSVDAVTDWFATA 252 (498)
Q Consensus 236 Y~G~r~~~~Iv~fv~k~ 252 (498)
-| ..++|.++++..
T Consensus 69 -ig--g~~~~~~~~~~~ 82 (85)
T PRK11200 69 -IG--GCTDFEAYVKEN 82 (85)
T ss_pred -Ec--CHHHHHHHHHHh
Confidence 23 346788887665
No 261
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.35 E-value=0.02 Score=53.71 Aligned_cols=42 Identities=12% Similarity=-0.103 Sum_probs=36.3
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~ 194 (498)
.++++||.|+|.||+.|++ .|.++++.+++++. +.|..+.|.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 3689999999999999976 78999999999765 688899885
No 262
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.34 E-value=0.022 Score=47.25 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=53.4
Q ss_pred CcEEEEEEe-cCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 010886 278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (498)
Q Consensus 278 ~~~~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~ 353 (498)
+++++++|. +.+ ....+.+..++.++.+.+.+..++.. +..++.++++|.+.|++++|++ +.....+.|..+.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~vPt~~i~~~-g~~v~~~~g~~~~ 89 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMGTPTVQFFKD-KELVKEISGVKMK 89 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCeeccEEEEEEC-CeEEEEEeCCccH
Confidence 345555554 322 11235555666666655666666532 2467999999999999999986 4444556888888
Q ss_pred hHHHHHHH
Q 010886 354 SRLSEVME 361 (498)
Q Consensus 354 ~~L~~fi~ 361 (498)
+.|.+|++
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 88888874
No 263
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0027 Score=56.59 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=52.5
Q ss_pred CccccccccCCC--CCCCHHHHHHHHHHHHhhcCCCCCC--------ChHHHHHHHHhhhhHcCChhhhhcccc
Q 010886 35 FPPSHYDALGIK--PYSSVEQVKEAYEKFSSKWNSGEEI--------PSTADFLKIQYAYELLTDPLWKRNYDV 98 (498)
Q Consensus 35 ~~~d~y~ilgv~--~~a~~~~ik~ayr~l~~~~HPD~~~--------~~~~~f~~i~~ay~~L~d~~~r~~yd~ 98 (498)
...+||.++|.. ....++.++.-|.-..++.|||+.. -+.+.-.++++||.+|.||.+|..|=.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 357899999755 4556777888999999999999732 256779999999999999999999963
No 264
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.34 E-value=0.01 Score=64.75 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=66.8
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~ 232 (498)
.+.-+-.|++|.|++|.+.....+++|.. .+.+..-.||..+++ +++++|+ |.++|++.+ +|..
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~~~~---~~~~~~~------v~~VP~~~i--~~~~---- 179 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGALFQ---DEVEARN------IMAVPTVFL--NGEE---- 179 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEchhCH---hHHHhcC------CcccCEEEE--CCcE----
Confidence 45568889999999999888888888774 456888888999554 5999999 999999964 5543
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 010886 233 MTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 233 ~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
.|.|..+.++|++.+.+.
T Consensus 180 --~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 180 --FGQGRMTLEEILAKLDTG 197 (517)
T ss_pred --EEecCCCHHHHHHHHhcc
Confidence 688999999999998764
No 265
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.017 Score=55.01 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=63.8
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~ 230 (498)
+..+..++.|+++||..|+++.-..+.+|+.. ....+.+++.++.+ .+|+.+. |...|++.++..|...
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~---eis~~~~------v~~vp~~~~~~~~~~v- 83 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFP---EISNLIA------VEAVPYFVFFFLGEKV- 83 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhh---HHHHHHH------HhcCceeeeeecchhh-
Confidence 47788899999999999999999999999998 56789999999554 4888887 8999999999887652
Q ss_pred CCcccccCCCCH
Q 010886 231 DCMTRFEGELSV 242 (498)
Q Consensus 231 ~~~~~Y~G~r~~ 242 (498)
....|....
T Consensus 84 ---~~l~~~~~~ 92 (227)
T KOG0911|consen 84 ---DRLSGADPP 92 (227)
T ss_pred ---hhhhccCcH
Confidence 344454433
No 266
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.33 E-value=0.0071 Score=53.78 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=40.0
Q ss_pred CCcEEEEE-ecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCC
Q 010886 153 SKPWLIQV-YSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (498)
Q Consensus 153 ~~~~lV~F-YapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~ 207 (498)
++.++|.| .+.||+.|+...|.+.++.++++.. +.+..|+.+........+++.+
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~ 79 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF 79 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC
Confidence 34555555 5999999999999999999999754 7888888875544333455544
No 267
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.33 E-value=0.022 Score=48.72 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=40.5
Q ss_pred cEEEE-EEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCC
Q 010886 279 KVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (498)
Q Consensus 279 ~~~vl-~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~ 341 (498)
.++|+ |+++.+ ....+.+..+|.++. ...|+.++... . .++++|+|.+.||+++|+++.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~--~-~l~~~~~i~~~Pt~~~f~~G~ 87 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEK--A-FLVNYLDIKVLPTLLVYKNGE 87 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchh--h-HHHHhcCCCcCCEEEEEECCE
Confidence 45544 555432 223566677887774 46777776433 2 799999999999999999864
No 268
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.27 E-value=0.009 Score=53.13 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=42.1
Q ss_pred CCCcEEEEEecCC-CCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCC
Q 010886 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (498)
Q Consensus 152 ~~~~~lV~FYapw-C~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~ 207 (498)
.++++++.||+.| |++|+.-.|.++++.+++++ +.|..|+.+......+..++++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~ 80 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEG 80 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcC
Confidence 3678999999998 69999999999999999864 6788888874433344455554
No 269
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.042 Score=46.76 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=59.0
Q ss_pred CcEEEEEEec----CCCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCCh
Q 010886 278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (498)
Q Consensus 278 ~~~~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~ 353 (498)
++++|+.|+. .+....|.+..+|.+|.+ +.|..++..+ ..++++.++|..-||+++||++... ..+-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~-~~~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEV-DEVVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEE-EEEecC-CH
Confidence 4676665542 234467899999999987 8899987654 6789999999999999999976543 334554 45
Q ss_pred hHHHHHHHhc
Q 010886 354 SRLSEVMEQN 363 (498)
Q Consensus 354 ~~L~~fi~~~ 363 (498)
..|.+.+..+
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 5777777653
No 270
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0048 Score=52.77 Aligned_cols=73 Identities=10% Similarity=-0.039 Sum_probs=53.3
Q ss_pred cCCCcEEEEEec--------CCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccce-eeeeEEE
Q 010886 151 HDSKPWLIQVYS--------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR-RGLPSLV 221 (498)
Q Consensus 151 ~~~~~~lV~FYa--------pwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I-~~~PTl~ 221 (498)
.+++.++|.|++ +||+.|.+..|...++-+.....+.|..|++.+.+.=...+.-|. +.+++ .++||+.
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR--~d~~~lt~vPTLl 100 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR--KDPGILTAVPTLL 100 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc--cCCCceeecceee
Confidence 455568999995 699999999999999999777778999999875433222233222 33335 8999998
Q ss_pred EeCC
Q 010886 222 AFPP 225 (498)
Q Consensus 222 ~f~~ 225 (498)
=+.+
T Consensus 101 rw~~ 104 (128)
T KOG3425|consen 101 RWKR 104 (128)
T ss_pred EEcC
Confidence 8775
No 271
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.10 E-value=0.031 Score=52.60 Aligned_cols=93 Identities=12% Similarity=0.050 Sum_probs=62.3
Q ss_pred CCcEEEEEe-cCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhh----------------------hHHHHhCCC
Q 010886 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA----------------------THLAERKPI 208 (498)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~----------------------~~l~~~~~~ 208 (498)
++++++.|| +.||+.|..-.+.+.+..++++.. +.+..|.++..... ..+++.||
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg- 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD- 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC-
Confidence 467889999 999999999999999999999754 56777776643221 23444454
Q ss_pred Ccccce----eee--eEEEEeCCCCcCCCCcccc--cCCCCHHHHHHHHHHH
Q 010886 209 GQIFFR----RGL--PSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (498)
Q Consensus 209 ~~~~~I----~~~--PTl~~f~~g~~~~~~~~~Y--~G~r~~~~Iv~fv~k~ 252 (498)
+ .+. |+..++-+++.. .....+ ...|+++++++.+...
T Consensus 110 -----v~~~~~g~~~r~tfIID~~G~I-~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 -----NMREDEGLADRATFVVDPQGII-QAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred -----CCcccCCceeeEEEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHhh
Confidence 6 355 888888643332 001112 2457899999888553
No 272
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.10 E-value=0.021 Score=49.19 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=44.8
Q ss_pred CcEEEEEEe-cC---CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCC
Q 010886 278 HKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (498)
Q Consensus 278 ~~~~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~ 341 (498)
+.++|+.|. +- |....|.+..+|.++.+.+.|..|+... .+++.++|+|.+.||+++|+++.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCE
Confidence 345555444 32 2234577788888887777788886433 47899999999999999999754
No 273
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.09 E-value=0.05 Score=46.68 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=49.1
Q ss_pred cHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCC-ceeeecCCCChhHHHHHHHh
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~-~~~~y~g~~~~~~L~~fi~~ 362 (498)
.+.+..++..+ +.+.+..+... +.++++++|+|.+.||+++|++++. ..+.|.|..+..++.+||..
T Consensus 41 ~~~l~~la~~~-~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 41 KQLLEELSELS-DKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIED 108 (113)
T ss_pred HHHHHHHHHhc-CceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHH
Confidence 45666666654 45667776543 2478999999999999999997543 34567888788888888875
No 274
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.07 E-value=0.011 Score=52.80 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=40.8
Q ss_pred CcEEEEEe-cCCCCCCCCChHHHHHHHHHhhc-cceEEEEEcccchhhhHHHHhCC
Q 010886 154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKP 207 (498)
Q Consensus 154 ~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~-~i~va~Vdc~~~~~~~~l~~~~~ 207 (498)
++++|.|| +.||+.|....|.+++++++++. .+.+..|+.+........+++++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 67777777 99999999999999999999975 36788888774333344455554
No 275
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.03 E-value=0.036 Score=51.56 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=52.9
Q ss_pred EEEE-EEecCC-CC--CcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCce--eee----cC
Q 010886 280 VKVI-FFSKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVY----YG 349 (498)
Q Consensus 280 ~~vl-~f~~~~-~~--~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~--~~y----~g 349 (498)
++|+ |+.+.+ .| ..+.+..+|..+. .++|..|....+ .++.+|+|...||+++|+++.... +-+ .+
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~---~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~ 160 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT---GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE 160 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch---hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC
Confidence 5555 444432 22 3566777888774 578888875432 689999999999999999864321 111 23
Q ss_pred CCChhHHHHHHHhc
Q 010886 350 SFNNSRLSEVMEQN 363 (498)
Q Consensus 350 ~~~~~~L~~fi~~~ 363 (498)
+++.++|..|+.++
T Consensus 161 ~f~~~~le~~L~~~ 174 (175)
T cd02987 161 DFDAEDLESFLVEY 174 (175)
T ss_pred CCCHHHHHHHHHhc
Confidence 56778888888753
No 276
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.01 E-value=0.0066 Score=56.36 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=64.0
Q ss_pred CCCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEE
Q 010886 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (498)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~ 222 (498)
..+|-..+.+..-+++.||-|.-..|+-+-...+.+|+..-+ .+|.+||+..-+- |+.+.+ |+-.|++.+
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PF---lv~kL~------IkVLP~v~l 143 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPF---LVTKLN------IKVLPTVAL 143 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCce---eeeeee------eeEeeeEEE
Confidence 455666677778899999999999999999999999876432 4899999995544 999999 999999999
Q ss_pred eCCCCc
Q 010886 223 FPPGCK 228 (498)
Q Consensus 223 f~~g~~ 228 (498)
|++|..
T Consensus 144 ~k~g~~ 149 (211)
T KOG1672|consen 144 FKNGKT 149 (211)
T ss_pred EEcCEE
Confidence 999975
No 277
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.98 E-value=0.0073 Score=57.14 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=52.9
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHH----------------------HH----------hhcc--c-eE--EEEEc
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIA----------------------AL----------LEGI--A-NT--GMVEL 193 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A----------------------~~----------l~~~--i-~v--a~Vdc 193 (498)
.+.+..++.|+.|.|++|+++.+...+.. .. +... . .. ..-.|
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 34678999999999999999988877410 00 0000 0 00 00112
Q ss_pred cc-chhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 194 GD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 194 ~~-~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
.. -.....+++++| |+|.|||+ |.+|. ...|..+.+.|.+|+
T Consensus 155 ~~~i~~~~~l~~~~g------i~gtPtii-~~~G~-------~~~G~~~~~~l~~~L 197 (197)
T cd03020 155 DNPVAANLALGRQLG------VNGTPTIV-LADGR-------VVPGAPPAAQLEALL 197 (197)
T ss_pred CchHHHHHHHHHHcC------CCcccEEE-ECCCe-------EecCCCCHHHHHhhC
Confidence 21 112334777777 99999997 77774 457888888887663
No 278
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.95 E-value=0.017 Score=49.64 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=45.8
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHhhcccccccccccCCCchHHHHhccCCceEEEEEeCccCchhhhhhhhhhheeee
Q 010886 397 YCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDVSFIMLISLFYVDFF 476 (498)
Q Consensus 397 lcvi~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~f~wvd~~~q~~~~~~~~~~~~~~~~ 476 (498)
+.++++ +.++.+++++.++++|+.+. +||++ +.|+|+|+..... ..++|
T Consensus 19 ~~~l~f--~~~~~~~~~~~~~~vAk~~~-------------------~~kgk-i~Fv~~d~~~~~~---------~~~~f 67 (111)
T cd03072 19 FLILFH--DKDDLESLKEFKQAVARQLI-------------------SEKGA-INFLTADGDKFRH---------PLLHL 67 (111)
T ss_pred eEEEEe--cchHHHHHHHHHHHHHHHHH-------------------hcCce-EEEEEEechHhhh---------HHHHc
Confidence 334445 45577899999999999222 28987 9999999988776 56666
Q ss_pred ccC--Cceeeeeecc
Q 010886 477 LHS--DLFVLWLLFP 489 (498)
Q Consensus 477 ~~~--~~~~~~~~~~ 489 (498)
+-+ |+|.+.|.+-
T Consensus 68 gl~~~~~P~i~i~~~ 82 (111)
T cd03072 68 GKTPADLPVIAIDSF 82 (111)
T ss_pred CCCHhHCCEEEEEcc
Confidence 666 5999988764
No 279
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.84 E-value=0.015 Score=51.33 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=37.9
Q ss_pred CCCcEEEEEecCCCCC-CCCChHHHHHHHHHhhcc----ceEEEEEccc
Q 010886 152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEGI----ANTGMVELGD 195 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~-C~~l~p~~~~~A~~l~~~----i~va~Vdc~~ 195 (498)
.+++++|.|+++||+. |.+..|.++++++.++.. +.+..|.++.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4678999999999997 999999999999999753 7788888763
No 280
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.78 E-value=0.0088 Score=50.83 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=57.9
Q ss_pred EEEecCCCCcccccCCCcEEEEEecCC--CCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCccccee
Q 010886 138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (498)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapw--C~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~ 215 (498)
...++.+++++.+......++.|..+. |..|...+=+.-|+.+.+.+....+.|+-. .+..|..+|| +.
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~---~e~~L~~r~g------v~ 81 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARA---AERALAARFG------VR 81 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH---HHHHHHHHHT-------T
T ss_pred CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECch---hHHHHHHHhC------Cc
Confidence 467889999999988777666665542 233444444666777777777787888855 4566999999 99
Q ss_pred eeeEEEEeCCCC
Q 010886 216 GLPSLVAFPPGC 227 (498)
Q Consensus 216 ~~PTl~~f~~g~ 227 (498)
.+|++++|++|.
T Consensus 82 ~~PaLvf~R~g~ 93 (107)
T PF07449_consen 82 RWPALVFFRDGR 93 (107)
T ss_dssp SSSEEEEEETTE
T ss_pred cCCeEEEEECCE
Confidence 999999999994
No 281
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.74 E-value=0.063 Score=44.02 Aligned_cols=89 Identities=13% Similarity=0.230 Sum_probs=50.8
Q ss_pred hhhhhhhcCCCcEEEEEEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCce
Q 010886 268 GKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP 344 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~ 344 (498)
+++.+....+..++|.|+.+.+ ....+.+..++..+...+.+..+.. .+..+++++|+|.+.||+++|+++. .-
T Consensus 5 ~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~~~g~-~~ 81 (97)
T cd02984 5 FEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA--EELPEISEKFEITAVPTFVFFRNGT-IV 81 (97)
T ss_pred HHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc--ccCHHHHHhcCCccccEEEEEECCE-EE
Confidence 3444443322234444555432 2234555666666544555655542 2247799999999999999998542 22
Q ss_pred eeecCCCChhHHHHHH
Q 010886 345 VVYYGSFNNSRLSEVM 360 (498)
Q Consensus 345 ~~y~g~~~~~~L~~fi 360 (498)
..+.|. +...|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 333553 566676655
No 282
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.73 E-value=0.012 Score=46.80 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=38.4
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch-h-hhHHHHhCCCCcccceeeeeEEEEeCCCC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-L-ATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~-~-~~~l~~~~~~~~~~~I~~~PTl~~f~~g~ 227 (498)
++.|+++||++|+.+.+.++++.. ...+..++..++. . ...+.+..| +.++|++ |.+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g------~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTG------QRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhC------CCCCCeE--EECCE
Confidence 578999999999999888877644 2345555554331 1 122444456 7799986 55663
No 283
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.73 E-value=0.068 Score=42.40 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=45.3
Q ss_pred cHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHH
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~ 361 (498)
.+.+..++.. ...+.++.+.... ...+++.|++.+.|++++++++. ....+.|..+.+.|.+||+
T Consensus 29 ~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 29 APVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKEELEEFLE 93 (93)
T ss_pred hHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHHHHHHHhC
Confidence 3445555554 3566677665332 36799999999999999998653 3455678777788888873
No 284
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.62 E-value=0.02 Score=46.62 Aligned_cols=79 Identities=8% Similarity=0.011 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch-hhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCccc
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~-~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~ 235 (498)
++.|..|||++|.+..-.++++..... .+.+-.+|.+.+. ...++.+..+.+ +..+|+|. .+|.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~if--i~g~-------- 66 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKP----VETVPQIF--VDEK-------- 66 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEE--ECCE--------
Confidence 577889999999988776666543321 2567777776432 122355555422 47899983 4553
Q ss_pred ccCCCCHHHHHHHHHHH
Q 010886 236 FEGELSVDAVTDWFATA 252 (498)
Q Consensus 236 Y~G~r~~~~Iv~fv~k~ 252 (498)
+-|+ .++|++++.+.
T Consensus 67 ~igG--~~dl~~~~~~~ 81 (86)
T TIGR02183 67 HVGG--CTDFEQLVKEN 81 (86)
T ss_pred EecC--HHHHHHHHHhc
Confidence 2333 47888887765
No 285
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=95.56 E-value=0.025 Score=55.13 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=58.8
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHH-h---------hc-----------------c----------ceEEEEEc
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-L---------EG-----------------I----------ANTGMVEL 193 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~-l---------~~-----------------~----------i~va~Vdc 193 (498)
.+.+..++.|.-|.|++|+++.+++.++.+. + .+ . ..+..-.|
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 4567789999999999999999888775320 0 00 0 00111123
Q ss_pred cc-chhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHH
Q 010886 194 GD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 194 ~~-~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
.. -.....+|+++| |+|.||++ |.+|. ...|.++.+.|.+++.+.
T Consensus 185 ~~~v~~~~~la~~lg------i~gTPtiv-~~~G~-------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFG------VQGTPAIV-LSNGT-------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcC------CccccEEE-EcCCe-------EeeCCCCHHHHHHHHHHc
Confidence 21 112344677777 99999998 77774 457999999999998754
No 286
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.48 E-value=0.033 Score=48.99 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=41.2
Q ss_pred CCCcEEEEEe-cCCCCCCCCChHHHHHHHHHhhc-cceEEEEEcccchhhhHHHHhC
Q 010886 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERK 206 (498)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~-~i~va~Vdc~~~~~~~~l~~~~ 206 (498)
.+++++|.|+ +.||+.|....|.+.+++++++. .+.+..|..+........+++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 4778888888 78999999999999999999954 4678888876433323334444
No 287
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.35 E-value=0.029 Score=45.34 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=29.4
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEc
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL 193 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc 193 (498)
++.|+.+.|++|..+.|..+++.....+.+.+..+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 4689999999999999999999866666665555543
No 288
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.34 E-value=0.018 Score=43.98 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=39.2
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
++.|+++||++|+++.+.+++.. +.+-.+|...+.. ...+.+..+ ...+|++ |.+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~------~~~~P~~--~~~~ 58 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSG------WPTVPQI--FING 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhC------CCCcCEE--EECC
Confidence 56788999999999887777553 6677888886542 234455555 5688877 3455
No 289
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.22 E-value=0.13 Score=46.11 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=56.3
Q ss_pred cchhhhhhhhhcCCCcEEEEEEe-cC---CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEE-EEe
Q 010886 264 KESMGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV-FLK 338 (498)
Q Consensus 264 ~~~~~~~fl~~~~~~~~~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~-lfk 338 (498)
+.+.+++.+... .++++|+-|. +- |....|.+..+|.++.+...|..|+.. +.+++++.|+|.+.|+++ +||
T Consensus 10 s~~e~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVD--e~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDIT--EVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECC--CCHHHHHHcCccCCCcEEEEEE
Confidence 333355555422 3456555444 31 223457778888888766777777643 247899999999666555 888
Q ss_pred CCCCceeeecCC--------CChhHHHHHHHh
Q 010886 339 DPGVKPVVYYGS--------FNNSRLSEVMEQ 362 (498)
Q Consensus 339 ~~~~~~~~y~g~--------~~~~~L~~fi~~ 362 (498)
++...-....|. .+.++|.+-++.
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence 653222223552 345556555554
No 290
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.20 E-value=0.032 Score=44.57 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=39.5
Q ss_pred EEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 156 ~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
-++.|..+||++|++..-.+++. .+.+-.+|++++.....+.+..| ...+|++. .+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g------~~~vP~i~--i~g 65 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTG------ATTVPQVF--IGG 65 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHC------CCCcCeEE--ECC
Confidence 46789999999998877666432 25566788876644444555556 78999984 355
No 291
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.067 Score=48.11 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=60.1
Q ss_pred ccccCCCcEEEEEecCCCCCCCCChHHHHH---HHHHhhccceEEEEEccc-------------chhhhHHHHhCCCCcc
Q 010886 148 SIFHDSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGIANTGMVELGD-------------IRLATHLAERKPIGQI 211 (498)
Q Consensus 148 ~~v~~~~~~lV~FYapwC~~C~~l~p~~~~---~A~~l~~~i~va~Vdc~~-------------~~~~~~l~~~~~~~~~ 211 (498)
++...++..+++|-++.|..|.++...... +-+.+++.+.+..+|.+. --...+||++++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~---- 112 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA---- 112 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc----
Confidence 344678899999999999999988755432 334455544455555431 112347999998
Q ss_pred cceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHH
Q 010886 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (498)
Q Consensus 212 ~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv 246 (498)
|++.||+++|...+.. .-.-.|-...+.++
T Consensus 113 --vrstPtfvFfdk~Gk~---Il~lPGY~ppe~Fl 142 (182)
T COG2143 113 --VRSTPTFVFFDKTGKT---ILELPGYMPPEQFL 142 (182)
T ss_pred --cccCceEEEEcCCCCE---EEecCCCCCHHHHH
Confidence 9999999999875443 12334777776554
No 292
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.19 E-value=0.15 Score=48.36 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCcEEEEEec-CCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchh-------------------------hhHHHHh
Q 010886 153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAER 205 (498)
Q Consensus 153 ~~~~lV~FYa-pwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~-------------------------~~~l~~~ 205 (498)
++.++|.||+ .||.+|..-.+.+.+.+++++.. +.|..|+++.... ...+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 5678889995 88999999889999999999865 6888888874321 1234444
Q ss_pred CCCCccccee------eeeEEEEeCCCCcCCC-CcccccCCCCHHHHHHHHHHH
Q 010886 206 KPIGQIFFRR------GLPSLVAFPPGCKSSD-CMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 206 ~~~~~~~~I~------~~PTl~~f~~g~~~~~-~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
|| +. .+|+..++-+...... ....-.-+|+.+++++.+...
T Consensus 116 yg------v~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YG------VLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cC------CcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 44 54 4788888875443200 000112457888888877653
No 293
>PRK15000 peroxidase; Provisional
Probab=95.17 E-value=0.099 Score=49.74 Aligned_cols=100 Identities=8% Similarity=0.004 Sum_probs=65.7
Q ss_pred CCCcEEEEEec-CCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHH----hCC---------------CCc
Q 010886 152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE----RKP---------------IGQ 210 (498)
Q Consensus 152 ~~~~~lV~FYa-pwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~----~~~---------------~~~ 210 (498)
.++++++.||+ .||+.|..-.|++.+.+++++.. +.|..|.++....+...++ +.+ +.+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 46789999999 59999999999999999999754 6788888874322221111 111 122
Q ss_pred cccee------eeeEEEEeCCCCcCCCCcccc--cCCCCHHHHHHHHHHH
Q 010886 211 IFFRR------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (498)
Q Consensus 211 ~~~I~------~~PTl~~f~~g~~~~~~~~~Y--~G~r~~~~Iv~fv~k~ 252 (498)
.|++. .+|+..++-+.+... ....+ .-+|+.+++++.+...
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~-~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVR-HQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 45576 789988887443320 00111 2458999999888653
No 294
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=95.12 E-value=0.73 Score=46.85 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=58.1
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecCCCCCcHH---------HHHHHHhcc--ccceEEEEEecccccHHHHHHcCCCC
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPF---------VRQISRNYW--AYASFAFVLWREEESSIWWNTFEVES 330 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~---------~~~~A~~~~--~~~~f~~v~~~~~~~~~l~~~f~V~~ 330 (498)
++..+ +.+.+++.. +++++|.......... ...+|++.. ..+.||.|.. .....+++++|+..
T Consensus 39 LneKN-fk~~lKkyd---~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~--~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 39 LNEKN-FKRALKKYD---VLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDS--KKDAKLAKKLGVEE 112 (383)
T ss_dssp E-TTT-HHHHHHH-S---EEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEET--TTTHHHHHHHT--S
T ss_pred cchhH-HHHHHHhhc---EEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEecc--HHHHHHHHhcCccc
Confidence 44433 566776554 6666665321111111 122333322 3455666653 33477999999999
Q ss_pred CCEEEEEeCCCCceeeecCCCChhHHHHHHHhcccCCCCcccccc
Q 010886 331 APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT 375 (498)
Q Consensus 331 ~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~~~~~vp~lt~~~ 375 (498)
.++|.+|+++ ..+.|.|.++.+.|..||..---..+..+++..
T Consensus 113 ~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~ 155 (383)
T PF01216_consen 113 EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKH 155 (383)
T ss_dssp TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHH
T ss_pred cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChh
Confidence 9999999964 467899999999999999863322233444433
No 295
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.07 E-value=0.13 Score=49.02 Aligned_cols=100 Identities=11% Similarity=-0.000 Sum_probs=61.7
Q ss_pred CCcE-EEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhH----HHHhCC--------------CCccc
Q 010886 153 SKPW-LIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATH----LAERKP--------------IGQIF 212 (498)
Q Consensus 153 ~~~~-lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~----l~~~~~--------------~~~~~ 212 (498)
++.+ |+.|.+.||+.|..-.+.+.+..++++.. +.+..|+++....+.+ +.++++ +.+.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 3433 44678999999999999999999999754 6777777773211111 111111 02244
Q ss_pred cee------eeeEEEEeCCCCcCC-CCcccccCCCCHHHHHHHHHHH
Q 010886 213 FRR------GLPSLVAFPPGCKSS-DCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 213 ~I~------~~PTl~~f~~g~~~~-~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
++. .+|+..++-+++... .......++|+.++|+..+...
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 463 589998887544320 0001124679999999888664
No 296
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.02 E-value=0.096 Score=45.42 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=34.9
Q ss_pred HHHHHHcCCCCCCEEEEEeCC-CCceeeecCCCChhHHHHHHHh
Q 010886 320 SIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~-~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
..++.+|+|.+.|++++|.++ +.....+.|..+.+.+.++|+.
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 678999999999999999876 4444566888888888888765
No 297
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=94.96 E-value=0.11 Score=47.18 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=45.9
Q ss_pred hhhhhhhcCCCcEEEEEEecCC---CCCcHHHHHHHHhccc-cceEEEEEecccccHHHHHHcCCCC------CCEEEEE
Q 010886 268 GKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVES------APAIVFL 337 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~~~~l~~~f~V~~------~Pti~lf 337 (498)
+++.+.......++|.|+++.+ ....|.+..++.++.+ .+.|+.|+... .++++++|+|.+ .||+++|
T Consensus 38 f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~PT~ilf 115 (152)
T cd02962 38 LEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQLPTIILF 115 (152)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCCCEEEEE
Confidence 4555543322235555666532 2345667778777653 46777776322 478999999987 9999999
Q ss_pred eCCC
Q 010886 338 KDPG 341 (498)
Q Consensus 338 k~~~ 341 (498)
+++.
T Consensus 116 ~~Gk 119 (152)
T cd02962 116 QGGK 119 (152)
T ss_pred ECCE
Confidence 9753
No 298
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.80 E-value=0.02 Score=42.95 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=37.7
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch-hhhHHHHhCCCCcccceeeeeEEEE
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~-~~~~l~~~~~~~~~~~I~~~PTl~~ 222 (498)
++.|..+||++|++....+++. .+.+-.+|.++++ ....+.+..+ ..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g------~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSG------VRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHS------SSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcC------CCccCEEEE
Confidence 4678899999998766555321 2688899998763 3333444446 889999875
No 299
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=94.74 E-value=0.098 Score=45.00 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=50.5
Q ss_pred CCcEEEEEEecC----CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeee
Q 010886 277 PHKVKVIFFSKT----GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY 347 (498)
Q Consensus 277 ~~~~~vl~f~~~----~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y 347 (498)
.++++|+-|+.. +....|.+..+|.++.+.+.|..|... +.+++++.|+|..-||.++|+++....++|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPtfvffkngkh~~~d~ 85 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPSTIFFFNGQHMKVDY 85 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence 356788777642 122357778889888655777777643 247899999998899999999877766776
No 300
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.71 E-value=0.093 Score=57.26 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=63.3
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~ 232 (498)
.+.-+-.|++|.|++|....-..+++|.. .+.+..-.+|+.+++ +++++|+ |.++|++.+ +|..
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-~p~i~~~~id~~~~~---~~~~~~~------v~~VP~~~i--~~~~---- 180 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALL-NPNISHTMIDGALFQ---DEVEALG------IQGVPAVFL--NGEE---- 180 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHh-CCCceEEEEEchhCH---HHHHhcC------CcccCEEEE--CCcE----
Confidence 45568889999999998777777776655 345777778988554 5999999 999999965 5543
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 010886 233 MTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 233 ~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
.+.|..+.+++++.+.+.
T Consensus 181 --~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 181 --FHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEecCCCHHHHHHHHhhc
Confidence 688999999888877654
No 301
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.59 E-value=0.14 Score=42.95 Aligned_cols=95 Identities=8% Similarity=0.116 Sum_probs=67.2
Q ss_pred EEe-cCCCCccccc-CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceee
Q 010886 139 NVV-TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (498)
Q Consensus 139 ~~L-t~~nF~~~v~-~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~ 216 (498)
.++ +.++.+.+++ ++++.+|=|+..--+ .....|.++|..+.....|+...-. .+...++ +.
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~------~~- 66 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS------KVAKKLG------LK- 66 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH------HHHHHcC------CC-
Confidence 345 3445777787 788888888766433 4567899999999877777665533 2666665 54
Q ss_pred eeEEEEeCCCCcCCCCcccc-cCCCCHHHHHHHHHHH
Q 010886 217 LPSLVAFPPGCKSSDCMTRF-EGELSVDAVTDWFATA 252 (498)
Q Consensus 217 ~PTl~~f~~g~~~~~~~~~Y-~G~r~~~~Iv~fv~k~ 252 (498)
.|++.++++.... ...| .|..+.+.|.+|+...
T Consensus 67 ~~~i~l~~~~~e~---~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 67 MNEVDFYEPFMEE---PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCcEEEeCCCCCC---CcccCCCCCCHHHHHHHHHHh
Confidence 6999999873221 3469 7888999999999754
No 302
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.47 E-value=0.1 Score=43.98 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=64.7
Q ss_pred CCCcccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEe
Q 010886 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (498)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f 223 (498)
++.+.++..+++.+|=|+..--+ .....|.++|..+.....|+...-. .+..+++ + .|++++|
T Consensus 9 ~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~------~--~~~ivl~ 71 (104)
T cd03069 9 AEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYG------Y--GEGVVLF 71 (104)
T ss_pred HHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcC------C--CCceEEE
Confidence 34556677788888888866433 4678999999999777778665533 2667777 7 6889999
Q ss_pred CCCC---cCCCCcccccCCCCHHHHHHHHHHH
Q 010886 224 PPGC---KSSDCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 224 ~~g~---~~~~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
++.. +..+....|.|..+.++|.+|+...
T Consensus 72 ~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 72 RPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred echhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 5421 0011234699999999999999754
No 303
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.42 E-value=0.083 Score=41.15 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=44.2
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccc
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y 236 (498)
++.|..+||+.|.+..-.+++. .+.+-.+|.+++.....+.+..| ...+|.+ |.+|. +
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g------~~~vP~i--fi~g~--------~ 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTG------AMTVPQV--FIDGE--------L 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhC------CCCcCeE--EECCE--------E
Confidence 5778899999998876444421 25677788776553333444446 7799997 55663 2
Q ss_pred cCCCCHHHHHHHH
Q 010886 237 EGELSVDAVTDWF 249 (498)
Q Consensus 237 ~G~r~~~~Iv~fv 249 (498)
-|+ .++|.+|+
T Consensus 61 igg--~~~l~~~l 71 (72)
T cd03029 61 IGG--SDDLEKYF 71 (72)
T ss_pred EeC--HHHHHHHh
Confidence 332 56777764
No 304
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.41 E-value=0.08 Score=45.80 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=61.4
Q ss_pred cccc--cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeC
Q 010886 147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (498)
Q Consensus 147 ~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~ 224 (498)
+.+| .+.+.++|-|-.+|.+.|.++-....+.|+.++....+.-||.++- +.+.+-|+ +...||+++|-
T Consensus 15 dqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV---~~~~~~~~------l~~p~tvmfFf 85 (142)
T KOG3414|consen 15 DQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV---PDFVKMYE------LYDPPTVMFFF 85 (142)
T ss_pred HHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh---hhhhhhhc------ccCCceEEEEE
Confidence 3445 5678899999999999999999999999999999999999999843 44666666 88999999998
Q ss_pred CCCc
Q 010886 225 PGCK 228 (498)
Q Consensus 225 ~g~~ 228 (498)
+++.
T Consensus 86 n~kH 89 (142)
T KOG3414|consen 86 NNKH 89 (142)
T ss_pred cCce
Confidence 8754
No 305
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.066 Score=49.78 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=43.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC----------ChHHHHHHHHhhhhHc
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELL 87 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~----------~~~~~f~~i~~ay~~L 87 (498)
.+.|++||+...+++.+|+++||++....|||+-- ...+++.+|+.||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999631 2456788888888743
No 306
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.20 E-value=0.25 Score=42.43 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=38.9
Q ss_pred EEEEEEecCC---CCCcHHHHHHHHhccc---cceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCC
Q 010886 280 VKVIFFSKTG---ERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (498)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~ 341 (498)
++|.|+++-+ ....+.+..++..+++ .+.|+.++........++++|+|..+|++++|+++.
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence 4555555422 2235666777776653 244555532111235799999999999999998865
No 307
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=94.20 E-value=0.027 Score=49.73 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=40.3
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
.+.-++-|..+|||.|.+..|.+.++|+... .+.+--+--+++.. +-.++- ..+.+..||++++.++
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~e---l~~~~l---t~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKE---LMDQYL---TNGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHH---HTTTTT---T-SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChh---HHHHHH---hCCCeecCEEEEEcCC
Confidence 4456667889999999999999999999753 45555555554432 444442 1228899999999654
No 308
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.14 E-value=0.019 Score=52.52 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=47.6
Q ss_pred CCCcccccCCCcEEEEEecCCCCCCCCChH-HH--HHHHHHhhccceEEEEEcccchhhhHHHHhC--------CCCccc
Q 010886 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQIF 212 (498)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~C~~l~p-~~--~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~--------~~~~~~ 212 (498)
+-|+..-+.+++++|.++++||+-|+.|+- .| .++|+.|.....-.+||.++.+. +...| |
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd---id~~y~~~~~~~~~----- 99 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD---IDKIYMNAVQAMSG----- 99 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH---HHHHHHHHHHHHHS-----
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc---HHHHHHHHHHHhcC-----
Confidence 334455578999999999999999998874 34 35677787766677899887655 44444 4
Q ss_pred ceeeeeEEEEeCCCCc
Q 010886 213 FRRGLPSLVAFPPGCK 228 (498)
Q Consensus 213 ~I~~~PTl~~f~~g~~ 228 (498)
.-|+|+.++..+...
T Consensus 100 -~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 100 -SGGWPLTVFLTPDGK 114 (163)
T ss_dssp ----SSEEEEE-TTS-
T ss_pred -CCCCCceEEECCCCC
Confidence 559999888876543
No 309
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.14 E-value=0.18 Score=50.02 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=62.2
Q ss_pred CCCcEEEEEe-cCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhh-------------------------hHHHH
Q 010886 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA-------------------------THLAE 204 (498)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~-------------------------~~l~~ 204 (498)
.++.+++.|| +.||+.|..-.|.+.+..+++++. +.|..|.++....+ ..+|+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 3456777788 899999999999999999999755 56777777642111 22444
Q ss_pred hCCCCccccee-----eeeEEEEeC-CCCcCCCCcccc--cCCCCHHHHHHHHHHH
Q 010886 205 RKPIGQIFFRR-----GLPSLVAFP-PGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (498)
Q Consensus 205 ~~~~~~~~~I~-----~~PTl~~f~-~g~~~~~~~~~Y--~G~r~~~~Iv~fv~k~ 252 (498)
.|| +. ..|+..++. +|... ....| ..+|+.++|++-+...
T Consensus 177 ayG------v~~~~g~a~R~tFIID~dG~I~--~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFG------LLRDEGFSHRASVLVDKAGVVK--HVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcC------CCCcCCceecEEEEECCCCEEE--EEEEeCCCCCCCHHHHHHHHHHh
Confidence 444 64 478888886 44432 11112 3568999998877543
No 310
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.06 E-value=0.27 Score=46.52 Aligned_cols=77 Identities=10% Similarity=0.204 Sum_probs=50.5
Q ss_pred cEEEE-EEecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeee------c
Q 010886 279 KVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY------Y 348 (498)
Q Consensus 279 ~~~vl-~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y------~ 348 (498)
.++|+ |+.+.+ ....+.+..+|.+|. .++|..+.... ...+|++...||+++|+++.... .+ .
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i~~lPTlliyk~G~~v~-~ivG~~~~g 175 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPDKNLPTILVYRNGDIVK-QFIGLLEFG 175 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCCCCCCEEEEEECCEEEE-EEeCchhhC
Confidence 35555 444322 223567777888874 57888886432 35789999999999999864321 12 2
Q ss_pred C-CCChhHHHHHHHh
Q 010886 349 G-SFNNSRLSEVMEQ 362 (498)
Q Consensus 349 g-~~~~~~L~~fi~~ 362 (498)
| .++.++|..++.+
T Consensus 176 g~~~~~~~lE~~L~~ 190 (192)
T cd02988 176 GMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCHHHHHHHHHh
Confidence 2 4677888887765
No 311
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.01 E-value=0.038 Score=55.03 Aligned_cols=88 Identities=9% Similarity=0.194 Sum_probs=66.5
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~ 230 (498)
++..++-+.||+.||+..+...|+++-....+...-.++ .++.........+++ +.+.|++.+-..-.
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~------~~~~ps~~~~n~t~--- 141 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYG------IHSEPSNLMLNQTC--- 141 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccc------cccCCcceeecccc---
Confidence 446678899999999999999999987776666322222 333334444566777 89999998876544
Q ss_pred CCcccccCCCCHHHHHHHHHHH
Q 010886 231 DCMTRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 231 ~~~~~Y~G~r~~~~Iv~fv~k~ 252 (498)
+..|.|.++..+|++|-.+.
T Consensus 142 --~~~~~~~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 142 --PASYRGERDLASLVNFYTEI 161 (319)
T ss_pred --chhhcccccHHHHHHHHHhh
Confidence 45999999999999999887
No 312
>PTZ00051 thioredoxin; Provisional
Probab=93.84 E-value=0.44 Score=39.04 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=49.5
Q ss_pred ccchhhhhhhhhcCCCcEEEEEE-ecCC---CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEe
Q 010886 263 TKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLK 338 (498)
Q Consensus 263 t~~~~~~~fl~~~~~~~~~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk 338 (498)
++.+.+++.++ .++++++.| .+.+ ....+.+..++..+. ...|+.++.. +...++++|+|.+.|++++|+
T Consensus 6 ~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 6 TSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVD--ELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred cCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECc--chHHHHHHCCCceeeEEEEEe
Confidence 34333455554 233555544 4422 122455555666543 3566665432 236799999999999999998
Q ss_pred CCCCceeeecCCCChhHHH
Q 010886 339 DPGVKPVVYYGSFNNSRLS 357 (498)
Q Consensus 339 ~~~~~~~~y~g~~~~~~L~ 357 (498)
++. ....+.|. ..++|.
T Consensus 80 ~g~-~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 80 NGS-VVDTLLGA-NDEALK 96 (98)
T ss_pred CCe-EEEEEeCC-CHHHhh
Confidence 643 33455664 445543
No 313
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=93.78 E-value=0.39 Score=37.87 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=44.7
Q ss_pred cHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
.+.+..++..+.....+..++.. +.+++++++|+.+.|++++ ++. ..+.|..+.+.|.+++..
T Consensus 18 ~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 18 KRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEELVEAIKK 80 (82)
T ss_pred HHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHHHHHHHh
Confidence 45556666666555666666532 2467889999999999886 322 366888888899888875
No 314
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.58 E-value=0.45 Score=41.45 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=49.4
Q ss_pred EEEEEEec-C---CCCCcHHHHHHHHhccccceEEEEEeccc-----cc----HHHHHHcCCC----CCCEEEEEeCCCC
Q 010886 280 VKVIFFSK-T---GERASPFVRQISRNYWAYASFAFVLWREE-----ES----SIWWNTFEVE----SAPAIVFLKDPGV 342 (498)
Q Consensus 280 ~~vl~f~~-~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~-----~~----~~l~~~f~V~----~~Pti~lfk~~~~ 342 (498)
..+++|+. . |....|.+..++.+ ....+.+++.... .. .++.++|++. +.||+++|+++..
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 55555552 2 23456777777775 3456777775421 11 2566777655 4899999998654
Q ss_pred ceeeecC-CCChhHHHHHHH
Q 010886 343 KPVVYYG-SFNNSRLSEVME 361 (498)
Q Consensus 343 ~~~~y~g-~~~~~~L~~fi~ 361 (498)
.. ...| ..+.++|.+|+.
T Consensus 103 v~-~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 103 VS-VRCGSSTTAQELQDIAA 121 (122)
T ss_pred EE-EEeCCCCCHHHHHHHhh
Confidence 33 3456 456888998864
No 315
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.50 E-value=0.093 Score=46.57 Aligned_cols=39 Identities=3% Similarity=0.044 Sum_probs=29.8
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEE
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMV 191 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~V 191 (498)
+.++.+++|+.++|+||+++.|.+.++.... +.+.+...
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEE
Confidence 3567899999999999999999998877665 33434333
No 316
>PRK13599 putative peroxiredoxin; Provisional
Probab=93.45 E-value=0.3 Score=47.00 Aligned_cols=97 Identities=7% Similarity=-0.022 Sum_probs=61.5
Q ss_pred cEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHH------hCC------------CCcccce-
Q 010886 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE------RKP------------IGQIFFR- 214 (498)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~------~~~------------~~~~~~I- 214 (498)
.+|+.|.+.||+.|..-.+.+.+++.+++.. +.+..|.++....+...++ ..+ +.+.|++
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 4567888999999999999999999999754 6788888885322211111 000 1223435
Q ss_pred ------eeeeEEEEeCCCCcCCCCccccc--CCCCHHHHHHHHHHH
Q 010886 215 ------RGLPSLVAFPPGCKSSDCMTRFE--GELSVDAVTDWFATA 252 (498)
Q Consensus 215 ------~~~PTl~~f~~g~~~~~~~~~Y~--G~r~~~~Iv~fv~k~ 252 (498)
...|+..++-+.+... ....|. .+|+.++|++.+...
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir-~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIR-LIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEE-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 3689988887543320 111232 357899999888653
No 317
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.41 E-value=0.12 Score=41.61 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=48.0
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccc
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y 236 (498)
++.|..+||++|++..-.+++ ..+.+-.+|.++++...+..+..| ...+|++.+ ++. .
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i--~~~-------~- 60 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQG------FRQLPVVIA--GDL-------S- 60 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcC------CCCcCEEEE--CCE-------E-
Confidence 466778999999887655533 126788889886654333344445 779999864 332 1
Q ss_pred cCCCCHHHHHHHHHHH
Q 010886 237 EGELSVDAVTDWFATA 252 (498)
Q Consensus 237 ~G~r~~~~Iv~fv~k~ 252 (498)
-++...+.|.+.+...
T Consensus 61 ~~Gf~~~~l~~~~~~~ 76 (81)
T PRK10329 61 WSGFRPDMINRLHPAP 76 (81)
T ss_pred EecCCHHHHHHHHHhh
Confidence 2355677777776543
No 318
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=93.20 E-value=0.18 Score=53.95 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=28.0
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Q 010886 40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI 71 (498)
Q Consensus 40 y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~ 71 (498)
++-+++..-.+..+|||+|||-.+..||||.+
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlq 422 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQ 422 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCccccc
Confidence 55567777789999999999999999999976
No 319
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=93.04 E-value=0.43 Score=39.88 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=55.8
Q ss_pred hhhhhhhcCCCcEEEEEEecCCCCCcHHH---HHHHHhccccceEEEEEecccccHHHHHHcCCC----CCC-EEEEEeC
Q 010886 268 GKNFLAKTGPHKVKVIFFSKTGERASPFV---RQISRNYWAYASFAFVLWREEESSIWWNTFEVE----SAP-AIVFLKD 339 (498)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~~~~~~~~~---~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~----~~P-ti~lfk~ 339 (498)
+.+.+.. .+.+.|+|..+.. .....+ ..+|.+.++.-..++|.=.+.+...||++++|. .-| .|.-|++
T Consensus 12 fKKLLRT--r~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKd 88 (112)
T cd03067 12 FKKLLRT--RNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKD 88 (112)
T ss_pred HHHHHhh--cCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccC
Confidence 4444443 3446776665432 223333 446766666655555543333457899999998 445 3556666
Q ss_pred CCCceeeecCCCChhHHHHHHHh
Q 010886 340 PGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 340 ~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
++ -...|+...+..+|..|++.
T Consensus 89 G~-fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 89 GD-FHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CC-ccccccchhhHHHHHHHhhC
Confidence 44 34578888899999999874
No 320
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.00 E-value=0.35 Score=45.99 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=34.7
Q ss_pred cEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEccc
Q 010886 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD 195 (498)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~ 195 (498)
++|+.|.+.||+.|..-.+.+.+.+++++.. +.|..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4566788999999999999999999999765 6788888774
No 321
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.63 E-value=4 Score=44.55 Aligned_cols=173 Identities=11% Similarity=0.039 Sum_probs=94.5
Q ss_pred CcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCc
Q 010886 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM 233 (498)
Q Consensus 154 ~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~ 233 (498)
+++-+.+|.+-|..|..+....+++|+.- +.+++-..+ . -...|++.+..+|... .
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~-----~---------------~~~~p~~~~~~~~~~~---~ 74 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDS-----L---------------DVRKPSFSITRPGEDT---G 74 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEcc-----C---------------CCCCCEEEEEcCCccc---e
Confidence 34444445557999988877777776543 444432211 0 0147999998876543 5
Q ss_pred ccccCCCCHHHHHHHHHHHhh-cCCcccccccchhhhhhhhhcCCCcEEEEEEecCC-CCCc--HHHHHHHHhccccceE
Q 010886 234 TRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTG-ERAS--PFVRQISRNYWAYASF 309 (498)
Q Consensus 234 ~~Y~G~r~~~~Iv~fv~k~~~-~~P~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~-~~~~--~~~~~~A~~~~~~~~f 309 (498)
..|.|--.=.++-.|+...+. +.+... + +++ ..+.+...+...-+-+|.+..| -|+. .....+|.. ...+..
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l-~~~-~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~ 150 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQVGGHPPK-L-DQE-VIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITH 150 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHhcCCCCC-C-CHH-HHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceE
Confidence 688887776777777765321 223222 2 222 2223333221112334555443 2322 122223332 234443
Q ss_pred EEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 010886 310 AFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 310 ~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
-.+ +.. .+++.++|++.+.|++++ +++ ..+.|..+.+++.+.+..
T Consensus 151 ~~i---d~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 151 TMI---DGALFQDEVEARNIMAVPTVFL---NGE--EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEE---EchhCHhHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhc
Confidence 333 433 388999999999999876 222 356888887777777764
No 322
>PRK13191 putative peroxiredoxin; Provisional
Probab=92.59 E-value=0.61 Score=44.88 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=59.6
Q ss_pred cEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhh------------------------HHHHhCCCC
Q 010886 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLAT------------------------HLAERKPIG 209 (498)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~------------------------~l~~~~~~~ 209 (498)
++|+.|.++||+.|..-.+.+.+.+.+++.. +.|..|+++....+. .+++.||
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~yg-- 113 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLG-- 113 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcC--
Confidence 3444677999999999999999999999765 678888887443221 2333333
Q ss_pred ccccee-------eeeEEEEeCCCCcCCCCcccc--cCCCCHHHHHHHHHHH
Q 010886 210 QIFFRR-------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (498)
Q Consensus 210 ~~~~I~-------~~PTl~~f~~g~~~~~~~~~Y--~G~r~~~~Iv~fv~k~ 252 (498)
+. ..|+..++-+++... ....| .-+|+.++|+..+...
T Consensus 114 ----v~~~~~~~~~~r~tfIID~~G~Ir-~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 114 ----MIHAESSTATVRAVFIVDDKGTVR-LILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred ----CcccccCCceeEEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 42 468877776443320 01112 2457999999888654
No 323
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.49 E-value=0.16 Score=46.53 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEc
Q 010886 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL 193 (498)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc 193 (498)
+.++.+++|+.+.|+||+++.+...++.+++.+.+.+..+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 678899999999999999999999999888866665544443
No 324
>PRK13189 peroxiredoxin; Provisional
Probab=92.40 E-value=0.51 Score=45.66 Aligned_cols=97 Identities=9% Similarity=0.005 Sum_probs=58.6
Q ss_pred cEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHh----CC--------------CCccccee
Q 010886 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER----KP--------------IGQIFFRR 215 (498)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~----~~--------------~~~~~~I~ 215 (498)
++|+.|.++||+.|..-.+.+.+.+.+++.. +.|..|.++....+...++. .+ +.+.|++.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 4445667999999999999999999999754 57778887743221111110 00 12234453
Q ss_pred -------eeeEEEEeCCCCcCCCCcccc--cCCCCHHHHHHHHHHH
Q 010886 216 -------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (498)
Q Consensus 216 -------~~PTl~~f~~g~~~~~~~~~Y--~G~r~~~~Iv~fv~k~ 252 (498)
.+|+..++.+.+... ....| .++|+.+++...+...
T Consensus 118 ~~~~~~~~~r~tfIID~~G~Ir-~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 118 SPGKGTNTVRAVFIIDPKGIIR-AILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred ccccCCCceeEEEEECCCCeEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 468777776433320 01112 3677888888877553
No 325
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=92.29 E-value=0.73 Score=40.05 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhccccceEEEEEeccc-----ccHHHHHHcCCC-CCCEEEEEeCC
Q 010886 292 ASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVE-SAPAIVFLKDP 340 (498)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~-----~~~~l~~~f~V~-~~Pti~lfk~~ 340 (498)
..|.+..++.++.+...|..|...+. ....+..+++|. +.||+++|+.+
T Consensus 46 ~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 46 AEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 35777778887776788888876432 135789999998 99999999653
No 326
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=92.01 E-value=0.35 Score=48.03 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=43.7
Q ss_pred cHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCce--eee----cCCCChhHHHHHHHhcc
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVY----YGSFNNSRLSEVMEQNK 364 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~--~~y----~g~~~~~~L~~fi~~~~ 364 (498)
...+..+|.+|. .++|..+....+. +..+|.+...|+|++|++++... +.+ ..+++..+|..|+.++.
T Consensus 165 n~~L~~LA~kyp-~vKFvkI~a~~~~---~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 165 NSCLECLARKYP-EVKFVKIRASKCP---ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp HHHHHHHHHH-T-TSEEEEEEECGCC---TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred HHHHHHHHHhCC-ceEEEEEehhccC---cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 345566888874 6889988765543 56789988999999999764322 111 23467889999999754
No 327
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.00 E-value=0.2 Score=39.02 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=43.0
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCccccc
Q 010886 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (498)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~ 237 (498)
+.|..++|++|++....+++ ..+.+-.+|.++++...+...+.| ..++|++.+ +|. ..-
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g------~~~vP~v~~--~g~-------~~~ 60 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQG------FRQVPVIVA--DGD-------LSW 60 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcC------CcccCEEEE--CCC-------cEE
Confidence 45677999999887755543 235777888886654333334446 779999754 442 233
Q ss_pred CCCCHHHHHH
Q 010886 238 GELSVDAVTD 247 (498)
Q Consensus 238 G~r~~~~Iv~ 247 (498)
|+.+.+.|.+
T Consensus 61 ~G~~~~~~~~ 70 (72)
T TIGR02194 61 SGFRPDKLKA 70 (72)
T ss_pred eccCHHHHHh
Confidence 4455565544
No 328
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.68 E-value=6.6 Score=42.83 Aligned_cols=174 Identities=13% Similarity=0.038 Sum_probs=91.2
Q ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCC
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~ 232 (498)
+.+.|+.|.. -|..|..+....+++++. .+.+.+-.-+- + ....|++.+..+|...
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-s~ki~~~~~~~-------------~------~~~~p~~~~~~~~~~~--- 74 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASL-SDKISLTQNTA-------------D------TLRKPSFTILRDGADT--- 74 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHh-CCCeEEEEecC-------------C------cCCCCeEEEecCCccc---
Confidence 3344555555 688887777666666543 34444422221 1 2356999998777543
Q ss_pred cccccCCCCHHHHHHHHHHHhh-cCCcccccccchhhhhhhhhcCCCcEEEEEEecCC-CCCc--HHHHHHHHhccccce
Q 010886 233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTG-ERAS--PFVRQISRNYWAYAS 308 (498)
Q Consensus 233 ~~~Y~G~r~~~~Iv~fv~k~~~-~~P~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~-~~~~--~~~~~~A~~~~~~~~ 308 (498)
...|.|--.=.++-.|+...+. +.+... ++ ++ ..+.+...+...-+-+|.+..| -|+. .....++.. ...+.
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-~p~i~ 150 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGGHGPK-LD-EG-IIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL-NPNIS 150 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh-CCCce
Confidence 5688887766677777665311 222221 22 22 2223333221112334555443 3322 111223332 22333
Q ss_pred EEEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 010886 309 FAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 309 f~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
....+.. .+++.++|++.+.|++++ +++ ..+.|..+.+.+.+.+..
T Consensus 151 ---~~~id~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 151 ---HTMIDGALFQDEVEALGIQGVPAVFL---NGE--EFHNGRMDLAELLEKLEE 197 (515)
T ss_pred ---EEEEEchhCHHHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhh
Confidence 3333443 388999999999999886 222 356788777766555543
No 329
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=0.1 Score=48.58 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=47.6
Q ss_pred ccccccCCCCCCC--HHHHHHHHHHHHhhcCCCCCC--C------hHHHHHHHHhhhhHcCChhhhhcccc
Q 010886 38 SHYDALGIKPYSS--VEQVKEAYEKFSSKWNSGEEI--P------STADFLKIQYAYELLTDPLWKRNYDV 98 (498)
Q Consensus 38 d~y~ilgv~~~a~--~~~ik~ayr~l~~~~HPD~~~--~------~~~~f~~i~~ay~~L~d~~~r~~yd~ 98 (498)
|++..+|..+.+. .+.++..|+.+.+.+|||+.. + ..+++..++.||.+|.||..|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4555666666554 444899999999999999754 2 23468999999999999999999964
No 330
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.18 E-value=0.34 Score=37.75 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=37.1
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
++.|+.|||++|++..-.+++. .+.+-.+|.++++. ..++.+..+ -..+|++ |.+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g------~~~vP~v--~i~~ 59 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTG------SSVVPQI--FFNE 59 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhC------CCCcCEE--EECC
Confidence 5678899999998877555532 25677888886543 233444445 5688987 4455
No 331
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=91.11 E-value=0.33 Score=37.77 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=36.1
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCccccee-eeeEEEEeCCC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRR-GLPSLVAFPPG 226 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~-~~PTl~~f~~g 226 (498)
++.|..+||++|.+....+++. .+.+-.+|.++++. ...+-+..+ .. ++|++ |.+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~------~~~~vP~v--~i~g 59 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSG------GRRTVPQI--FIGD 59 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhC------CCCccCEE--EECC
Confidence 4677889999998877666542 25677888886532 222334445 55 89987 4555
No 332
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=90.56 E-value=0.2 Score=39.69 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=36.1
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
+.|..|||++|.+....+++. .+.+-.+|.+.++. ..++.+..+ ...+|++ |.+|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g------~~~vP~i--~i~g 57 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSG------RRTVPQI--FIGD 57 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhC------CCCcCEE--EECC
Confidence 567789999999888777643 14566677775532 233444445 6799997 4455
No 333
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=90.24 E-value=3.1 Score=35.36 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=34.1
Q ss_pred cHHHHHHcCCCCCCEEEEEeC-CCCceeeecCCCChhHHHHHHHh
Q 010886 319 SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 319 ~~~l~~~f~V~~~Pti~lfk~-~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
...++..|++.++|+++++.+ .+..-....|..+.+.+..-+++
T Consensus 65 ~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 65 GQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred HHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence 467899999999999999977 44444556898888877766654
No 334
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=89.23 E-value=0.4 Score=40.15 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=38.0
Q ss_pred cccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhH----HHHhCCCCcccceeeeeEEEEeC
Q 010886 149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH----LAERKPIGQIFFRRGLPSLVAFP 224 (498)
Q Consensus 149 ~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~----l~~~~~~~~~~~I~~~PTl~~f~ 224 (498)
.|++++ ++.|-.|||++|++..-.+++. .+.+..+|.++++...+ +.+..| .+.+|+| |.
T Consensus 4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg------~~tvP~V--fi 67 (99)
T TIGR02189 4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGC------SPAVPAV--FV 67 (99)
T ss_pred hhccCC--EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcC------CCCcCeE--EE
Confidence 444444 5778899999998877555433 14456677765433222 333334 6788987 56
Q ss_pred CC
Q 010886 225 PG 226 (498)
Q Consensus 225 ~g 226 (498)
+|
T Consensus 68 ~g 69 (99)
T TIGR02189 68 GG 69 (99)
T ss_pred CC
Confidence 66
No 335
>PHA03050 glutaredoxin; Provisional
Probab=88.48 E-value=0.46 Score=40.55 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=38.0
Q ss_pred ccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccc---hh-hhHHHHhCCCCcccceeeeeEEEEeCC
Q 010886 150 FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RL-ATHLAERKPIGQIFFRRGLPSLVAFPP 225 (498)
Q Consensus 150 v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~---~~-~~~l~~~~~~~~~~~I~~~PTl~~f~~ 225 (498)
+++++ ++.|..|||++|++..-.+++..-.. ..+-.+|.+++ .. ...+-+.-| .+.+|+| |.+
T Consensus 10 i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG------~~tVP~I--fI~ 76 (108)
T PHA03050 10 LANNK--VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITG------GRTVPRI--FFG 76 (108)
T ss_pred hccCC--EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcC------CCCcCEE--EEC
Confidence 44444 67889999999988776665442111 13556666642 11 223444455 6799998 445
Q ss_pred C
Q 010886 226 G 226 (498)
Q Consensus 226 g 226 (498)
|
T Consensus 77 g 77 (108)
T PHA03050 77 K 77 (108)
T ss_pred C
Confidence 5
No 336
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=88.38 E-value=0.24 Score=42.01 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=59.7
Q ss_pred CCCcccc--cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhh-HHHHhCCCCccccee-eeeE
Q 010886 144 EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFRR-GLPS 219 (498)
Q Consensus 144 ~nF~~~v--~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~-~l~~~~~~~~~~~I~-~~PT 219 (498)
+++++++ +.+++++|.=.+..|+-+.....+|++.+....+.+.++-+|.-+++... .+|+++| |+ .=|.
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~------V~HeSPQ 81 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG------VKHESPQ 81 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----------SSE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC------CCcCCCc
Confidence 4567777 34888888888999999988888888888887766899999998765533 3677888 75 7899
Q ss_pred EEEeCCCCcCCCCccccc---CCCCHHHH
Q 010886 220 LVAFPPGCKSSDCMTRFE---GELSVDAV 245 (498)
Q Consensus 220 l~~f~~g~~~~~~~~~Y~---G~r~~~~I 245 (498)
++++++|.. .|. +..+.++|
T Consensus 82 ~ili~~g~~------v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKV------VWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEE------EEEEEGGG-SHHHH
T ss_pred EEEEECCEE------EEECccccCCHHhc
Confidence 999999975 454 45555554
No 337
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=88.24 E-value=1 Score=38.40 Aligned_cols=70 Identities=26% Similarity=0.338 Sum_probs=44.2
Q ss_pred hhhhhhhhcCCCcEEEEEEecCCCC----Cc--HHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCC
Q 010886 267 MGKNFLAKTGPHKVKVIFFSKTGER----AS--PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (498)
Q Consensus 267 ~~~~fl~~~~~~~~~vl~f~~~~~~----~~--~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~ 340 (498)
.++.|+.... ..|+|+..+... .. ..+=.+.+.+.+....+.+. ......|..+||+...|++++|+++
T Consensus 18 ~ld~~l~~~~---~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 18 TLDAFLAAPG---DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp CHHHHHHCCS---CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETT
T ss_pred hHHHHHhCCC---cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECC
Confidence 3788887543 577777643221 11 12233556666666655554 2334779999999999999999975
Q ss_pred C
Q 010886 341 G 341 (498)
Q Consensus 341 ~ 341 (498)
.
T Consensus 93 ~ 93 (107)
T PF07449_consen 93 R 93 (107)
T ss_dssp E
T ss_pred E
Confidence 4
No 338
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.10 E-value=0.73 Score=36.98 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=33.3
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch--hhhHHHHhC-CCCcccceeeeeEEEE
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--LATHLAERK-PIGQIFFRRGLPSLVA 222 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~--~~~~l~~~~-~~~~~~~I~~~PTl~~ 222 (498)
++.|-.|+|++|++....++ ..-+.+..+|.+++. ...+..++. | .+.+|+|.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g------~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKG------QRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCC------CCCcCEEEE
Confidence 46677899999977664443 112566677776554 222333443 5 789999754
No 339
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=88.03 E-value=2.1 Score=47.32 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=42.3
Q ss_pred cceEEEEEeccc--ccHHHHHHcCCCCCCEEEEEeCCCCc--eeeecCCCChhHHHHHHHh
Q 010886 306 YASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVK--PVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 306 ~~~f~~v~~~~~--~~~~l~~~f~V~~~Pti~lfk~~~~~--~~~y~g~~~~~~L~~fi~~ 362 (498)
...+..++..+. +.+++.++|++.+.|++++|+++++. ...+.|..+.+++.+++++
T Consensus 508 ~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 508 DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 455666665433 23679999999999999999754443 2456888899999999876
No 340
>PRK10638 glutaredoxin 3; Provisional
Probab=87.70 E-value=0.57 Score=37.55 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=36.1
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch-hhhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~-~~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
++.|..+||++|++..-.+++. .+.+..+|+++++ ....+.+..| ...+|+| |.+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g------~~~vP~i--~~~g 60 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSG------RTTVPQI--FIDA 60 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhC------CCCcCEE--EECC
Confidence 4556679999998877555532 2556778887654 2234455556 6789987 3455
No 341
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.98 E-value=0.59 Score=41.95 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=35.8
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHh--hccceEEEEEcc
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELG 194 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l--~~~i~va~Vdc~ 194 (498)
.+.++.+++|+.+.|+||.++.+...++.+++ .+.+.+.-++.-
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 35677899999999999999999999998888 677777777664
No 342
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=86.69 E-value=0.65 Score=38.70 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=31.9
Q ss_pred CCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhh-HHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 163 pwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~-~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
|||++|++..-.+++. .+.+-.+|..+++... .+.+..| .+.+|.+ |.+|
T Consensus 25 ~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg------~~tvP~v--fi~g 75 (97)
T TIGR00365 25 PQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSN------WPTIPQL--YVKG 75 (97)
T ss_pred CCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhC------CCCCCEE--EECC
Confidence 9999998877655543 1467778887554322 3444445 5688887 4555
No 343
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=86.44 E-value=4.2 Score=36.87 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=35.3
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhc
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
..+.+.|++...|+++++.+++.....+.|..+.+.+.++++.-
T Consensus 128 ~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 128 RQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred chHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 56889999999999999976555445678888888999998753
No 344
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=86.40 E-value=1.2 Score=39.13 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=37.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcCChh
Q 010886 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPL 91 (498)
Q Consensus 38 d~y~ilgv~~~a~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~d~~ 91 (498)
.-..||||++..+.++|.+.|.+|-...+|++. |+.=--..|..|.|.|....
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999986 55555667778888776443
No 345
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=86.07 E-value=0.73 Score=43.92 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=31.9
Q ss_pred CCcEEEEEecCCCCCCCCChHHH---HHHHHHhhccceEEEEEc
Q 010886 153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVEL 193 (498)
Q Consensus 153 ~~~~lV~FYapwC~~C~~l~p~~---~~~A~~l~~~i~va~Vdc 193 (498)
+++-+|+|+...|+||.++.|.+ +.+.+.+.+.+.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 35669999999999999999876 677777766666666554
No 346
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=85.77 E-value=0.9 Score=39.90 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=52.7
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCC
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~ 227 (498)
..+++++|-|-.+|.+.|.++-....++|+.++....+..||.++-+ .+.+-|. +..-=|+++|-+++
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp---dfn~~ye------l~dP~tvmFF~rnk 85 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP---DFNQMYE------LYDPCTVMFFFRNK 85 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH---CCHHHTT------S-SSEEEEEEETTE
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch---hhhcccc------cCCCeEEEEEecCe
Confidence 56889999999999999999999999999999999999999999544 3666666 77333466664443
No 347
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=85.72 E-value=0.84 Score=36.58 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=52.3
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccc
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y 236 (498)
++.|..|.|+-|.......++++.. ..+.+-.||.++++. +-.+|+ . ..|.+.+=..++.. .....
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~~---l~~~Y~------~-~IPVl~~~~~~~~~--~~~~~ 67 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDEDPE---LFEKYG------Y-RIPVLHIDGIRQFK--EQEEL 67 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTTHH---HHHHSC------T-STSEEEETT-GGGC--TSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCCHH---HHHHhc------C-CCCEEEEcCccccc--cccee
Confidence 6788899999997766655554322 237899999996654 888997 3 68986653321110 12245
Q ss_pred cCCCCHHHHHHHHH
Q 010886 237 EGELSVDAVTDWFA 250 (498)
Q Consensus 237 ~G~r~~~~Iv~fv~ 250 (498)
.+..+.+.|.+|++
T Consensus 68 ~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 68 KWRFDEEQLRAWLE 81 (81)
T ss_dssp ESSB-HHHHHHHHH
T ss_pred CCCCCHHHHHHHhC
Confidence 67889999998874
No 348
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=85.70 E-value=2.6 Score=41.59 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=22.5
Q ss_pred cCCCcEEEEEecCCCCCCCCChHHHHHH
Q 010886 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI 178 (498)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~l~p~~~~~ 178 (498)
.+.+..++.|.-|.|++|+++.++..+.
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~ 142 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPW 142 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHH
Confidence 3456788999999999999998776543
No 349
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=85.68 E-value=1.1 Score=42.14 Aligned_cols=102 Identities=16% Similarity=0.267 Sum_probs=65.9
Q ss_pred EEEecCCCCcccc--cC-CCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccce
Q 010886 138 FNVVTSEDFPSIF--HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (498)
Q Consensus 138 V~~Lt~~nF~~~v--~~-~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I 214 (498)
|..++..+|.+.| .+ +-.++|..|...-+.|.-+.-.++++|..+.. ++|.++=.+ . +-..|+ =
T Consensus 93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at---~---cIpNYP------e 159 (240)
T KOG3170|consen 93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPAT---T---CIPNYP------E 159 (240)
T ss_pred eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccc---c---ccCCCc------c
Confidence 6778888887776 33 44455789999999999999999999998865 444444433 1 112234 4
Q ss_pred eeeeEEEEeCCCCcCC--CCcccccCCC-CHHHHHHHHHHH
Q 010886 215 RGLPSLVAFPPGCKSS--DCMTRFEGEL-SVDAVTDWFATA 252 (498)
Q Consensus 215 ~~~PTl~~f~~g~~~~--~~~~~Y~G~r-~~~~Iv~fv~k~ 252 (498)
.-.|||++|..|.... ..+-.+-|.+ +.+++-.++-+.
T Consensus 160 ~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 160 SNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred cCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 5899999999986530 1111333443 455555555444
No 350
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=85.08 E-value=6.6 Score=39.15 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=45.9
Q ss_pred CcHHHHHHHHhccccceEEEEEeccc---------ccHHHHHHcCCCCCCEEEEEeCCCCc-eeeecCCCChhHHHHHHH
Q 010886 292 ASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVK-PVVYYGSFNNSRLSEVME 361 (498)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~---------~~~~l~~~f~V~~~Pti~lfk~~~~~-~~~y~g~~~~~~L~~fi~ 361 (498)
..|.+..++.++. +.+..|..... ....+.+++||...|+++++.+++.. .....|.++.+.|.+.+.
T Consensus 184 ~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~ 261 (271)
T TIGR02740 184 QAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRIL 261 (271)
T ss_pred HhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHH
Confidence 3566777777663 44555543221 12458899999999999999874333 234468888888888876
Q ss_pred h
Q 010886 362 Q 362 (498)
Q Consensus 362 ~ 362 (498)
.
T Consensus 262 ~ 262 (271)
T TIGR02740 262 L 262 (271)
T ss_pred H
Confidence 4
No 351
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=84.51 E-value=1.2 Score=36.36 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhh-hHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 163 pwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~-~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
|||++|++..-.+++. .+.+-.+|..++... ..|.+..| -+.+|+| |.+|
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g------~~tvP~v--fi~g 71 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSN------WPTFPQL--YVNG 71 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhC------CCCCCEE--EECC
Confidence 7999998876555433 157778887755432 33444445 6789997 5566
No 352
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=5.1 Score=39.10 Aligned_cols=69 Identities=23% Similarity=0.221 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhc
Q 010886 290 ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
+...|.+..+|.+|. ..-|..|++..| +..+..+||+.-||.++|+++. +-..+.|. +...|++-|.++
T Consensus 37 k~IaP~Fs~lankYp-~aVFlkVdVd~c--~~taa~~gV~amPTFiff~ng~-kid~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 37 KRIAPIFSDLANKYP-GAVFLKVDVDEC--RGTAATNGVNAMPTFIFFRNGV-KIDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred HhhhhHHHHhhhhCc-ccEEEEEeHHHh--hchhhhcCcccCceEEEEecCe-EeeeecCC-CHHHHHHHHHHH
Confidence 456788899999884 455777765554 5678899999999999998643 33345665 666777777654
No 353
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=83.83 E-value=2.2 Score=36.19 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=60.5
Q ss_pred CCCcccccCC-CcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEE
Q 010886 144 EDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (498)
Q Consensus 144 ~nF~~~v~~~-~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~ 222 (498)
++.+.++... ++.+|=|+..--+ .....|.++|..+.....|+...-. .+..+++ +. .|++++
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~------~~-~~~vvl 72 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLK------VS-PGQLVV 72 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcC------CC-CCceEE
Confidence 4455666555 7777777765432 4567899999999887788665533 2666766 54 577888
Q ss_pred eCCCCcC---CCCcccccCC-CCHHH-HHHHHHH
Q 010886 223 FPPGCKS---SDCMTRFEGE-LSVDA-VTDWFAT 251 (498)
Q Consensus 223 f~~g~~~---~~~~~~Y~G~-r~~~~-Iv~fv~k 251 (498)
|++..-. .+....|.|. .+.++ |..|++.
T Consensus 73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 8654221 1223468887 66656 9999864
No 354
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=82.70 E-value=2.1 Score=35.81 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=28.3
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHH
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi 360 (498)
.++.+.+||.+.||++++...+.....+.|-.+.++|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 45899999999999999864444444568999888887764
No 355
>smart00594 UAS UAS domain.
Probab=82.22 E-value=9 Score=33.06 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=31.6
Q ss_pred ccHHHHHHcCCCCCCEEEEEeCCCCc---ee--eecCCCChhHHHHHH
Q 010886 318 ESSIWWNTFEVESAPAIVFLKDPGVK---PV--VYYGSFNNSRLSEVM 360 (498)
Q Consensus 318 ~~~~l~~~f~V~~~Pti~lfk~~~~~---~~--~y~g~~~~~~L~~fi 360 (498)
+...+++.|++.++|+++++.+.+.. .+ ...|..+.++|..++
T Consensus 74 eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 74 EGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred hHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 34679999999999999999765421 11 347888888877665
No 356
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=79.92 E-value=10 Score=32.07 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=29.5
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHH
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~ 358 (498)
..+++.|+|.+.|+++++.+++ ....+.|-.+.+.|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 5689999999999999998755 4445678777777653
No 357
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=79.66 E-value=3.1 Score=39.58 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=59.2
Q ss_pred EEEecC-CCCccccc---CCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccc
Q 010886 138 FNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (498)
Q Consensus 138 V~~Lt~-~nF~~~v~---~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (498)
|++|+. +.|-+.|+ +.-..+|..|-|.-.-|..|.....=+|.++ +.++|.++-.+ . + +.+..|.
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss---~---~----gas~~F~ 208 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS---N---T----GASDRFS 208 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec---c---c----cchhhhc
Confidence 788865 56877883 3456778999999999988887777777665 45788888776 2 1 2233444
Q ss_pred eeeeeEEEEeCCCCc
Q 010886 214 RRGLPSLVAFPPGCK 228 (498)
Q Consensus 214 I~~~PTl~~f~~g~~ 228 (498)
.+++||+.+|++|..
T Consensus 209 ~n~lP~LliYkgGeL 223 (273)
T KOG3171|consen 209 LNVLPTLLIYKGGEL 223 (273)
T ss_pred ccCCceEEEeeCCch
Confidence 899999999999864
No 358
>PRK10824 glutaredoxin-4; Provisional
Probab=78.62 E-value=1.5 Score=37.90 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=28.0
Q ss_pred CCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhH-HHHhCCCCcccceeeeeEEEEeCCC
Q 010886 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH-LAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 163 pwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~-l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
|||++|++..-.+.+.. +.+..+|..++..... |-+.-| .+.+|.| |.+|
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg------~~TVPQI--FI~G 78 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYAN------WPTFPQL--WVDG 78 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 79999988776555431 4455567665433222 222223 4566654 5666
No 359
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=78.19 E-value=2.1 Score=45.39 Aligned_cols=60 Identities=8% Similarity=-0.024 Sum_probs=35.0
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCC---CCcccceeeeeEEEE
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP---IGQIFFRRGLPSLVA 222 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~---~~~~~~I~~~PTl~~ 222 (498)
++.|..|||++|++..-.+++. .+.+-.+|.++++...++-++.+ ..+..+.+.+|++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 5778899999998766444432 25777888886653222222211 000011678999854
No 360
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=77.34 E-value=7.1 Score=37.97 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=36.6
Q ss_pred eEEEecCCCCccc---ccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhcc
Q 010886 137 AFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI 185 (498)
Q Consensus 137 ~V~~Lt~~nF~~~---v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~ 185 (498)
.|+.++.++..++ .+.+.+.+++|-+=-|+.=..-.++++++++++.+.
T Consensus 83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~ 134 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV 134 (237)
T ss_pred ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence 3677777663333 378999999999888887666677888888887664
No 361
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=77.20 E-value=8.3 Score=34.87 Aligned_cols=54 Identities=13% Similarity=-0.019 Sum_probs=41.5
Q ss_pred CcEEEEEe-cCCCCCCCCC-hHHHHHHHHHhhcc-c-eEEEEEcccchhhhHHHHhCC
Q 010886 154 KPWLIQVY-SDGSYLCGQF-SGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP 207 (498)
Q Consensus 154 ~~~lV~FY-apwC~~C~~l-~p~~~~~A~~l~~~-i-~va~Vdc~~~~~~~~l~~~~~ 207 (498)
+.+++.|| +.||+.|..- .+.+.+...++... + .|..|.++......+.+++.+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~ 87 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALG 87 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhC
Confidence 34455555 7899999997 99999999999755 3 588999886656666777776
No 362
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=76.33 E-value=5.9 Score=43.02 Aligned_cols=71 Identities=10% Similarity=0.146 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHhccccceEEEEEeccccc---HHHHHHcCCCCCCEEEEEeCCCCc---eeeecCCCChhHHHHHH
Q 010886 290 ERASPFVRQISRNYWAYASFAFVLWREEES---SIWWNTFEVESAPAIVFLKDPGVK---PVVYYGSFNNSRLSEVM 360 (498)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~---~~l~~~f~V~~~Pti~lfk~~~~~---~~~y~g~~~~~~L~~fi 360 (498)
-...|.++.+|.....-.....+...||.. ..+|.+|+|+.+|+|.+|+.+... ...+.|.....++.+.+
T Consensus 73 r~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l 149 (606)
T KOG1731|consen 73 RAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQL 149 (606)
T ss_pred hhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHH
Confidence 346789999998877777788888888843 569999999999999999875322 12334544444454444
No 363
>PTZ00062 glutaredoxin; Provisional
Probab=74.28 E-value=12 Score=35.62 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=46.7
Q ss_pred EEEEEEe-c-CCCC--CcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 010886 280 VKVIFFS-K-TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (498)
Q Consensus 280 ~~vl~f~-~-~~~~--~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~ 355 (498)
..|++|. + +.+| ..+.+..++.++ ..+.|..|. ++ |+|...|++++|+++.. --.+.|. +...
T Consensus 19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~---~d-------~~V~~vPtfv~~~~g~~-i~r~~G~-~~~~ 85 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVN---LA-------DANNEYGVFEFYQNSQL-INSLEGC-NTST 85 (204)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEc---cc-------cCcccceEEEEEECCEE-EeeeeCC-CHHH
Confidence 5666664 3 2222 345566688776 457777774 21 99999999999997543 2344565 5778
Q ss_pred HHHHHHhc
Q 010886 356 LSEVMEQN 363 (498)
Q Consensus 356 L~~fi~~~ 363 (498)
|..++..+
T Consensus 86 ~~~~~~~~ 93 (204)
T PTZ00062 86 LVSFIRGW 93 (204)
T ss_pred HHHHHHHH
Confidence 88888764
No 364
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=74.15 E-value=13 Score=29.19 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=36.4
Q ss_pred cHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCC-ChhHHHHHH
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVM 360 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~-~~~~L~~fi 360 (498)
.+.++.++.++...+.+..+. ....+.++|+.+.|++++ + +. . .+.|.. +.+.|.+++
T Consensus 17 ~~~~~~~~~e~~~~~~~~~v~-----~~~~a~~~~v~~vPti~i--~-G~-~-~~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 17 EKNVKKAVEELGIDAEFEKVT-----DMNEILEAGVTATPGVAV--D-GE-L-VIMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHcCCCeEEEEeC-----CHHHHHHcCCCcCCEEEE--C-CE-E-EEEeccCCHHHHHHHh
Confidence 455566777665555555543 223467899999999998 3 22 2 267753 446777765
No 365
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.65 E-value=6.6 Score=37.59 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred hhhcCCCcEEEEEEe---cCCCCCcHHHHHHHHhcc-ccceEEEEEecccccHHHHHHcCCCC------CCEEEEEeCCC
Q 010886 272 LAKTGPHKVKVIFFS---KTGERASPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVES------APAIVFLKDPG 341 (498)
Q Consensus 272 l~~~~~~~~~vl~f~---~~~~~~~~~~~~~A~~~~-~~~~f~~v~~~~~~~~~l~~~f~V~~------~Pti~lfk~~~ 341 (498)
+..+....|.+-||+ +++....|.+..++.+|. +.++||.|+..-- ++..++|+|.. .||+++|+++.
T Consensus 139 l~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf--pd~a~kfris~s~~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 139 LDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF--PDVAAKFRISLSPGSRQLPTYILFQKGK 216 (265)
T ss_pred hccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC--cChHHheeeccCcccccCCeEEEEccch
Confidence 333333457888886 344556777777777765 5678999875432 45788999872 79999998754
No 366
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=72.34 E-value=12 Score=31.70 Aligned_cols=93 Identities=16% Similarity=0.101 Sum_probs=43.5
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecCCCCCcHH--HH---HHHHhccccceEEEEEeccc--ccHHHHHHcCCCC-CCE
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPF--VR---QISRNYWAYASFAFVLWREE--ESSIWWNTFEVES-APA 333 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~--~~---~~A~~~~~~~~f~~v~~~~~--~~~~l~~~f~V~~-~Pt 333 (498)
+++.+.++++++.. .++++++|=.+ ..|+-.. ++ .......+.+.++++...+. -+..++++|||.. -|.
T Consensus 4 L~t~eql~~i~~~S-~~~~~~iFKHS-t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 4 LTTEEQLEEILEES-KEKPVLIFKHS-TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp --SHHHHHHHHHH----SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred cCCHHHHHHHHHhc-ccCcEEEEEeC-CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 44555577777653 23455554332 2233221 11 12222222377888886543 2367999999985 699
Q ss_pred EEEEeCCCCceeeecCCCChhHH
Q 010886 334 IVFLKDPGVKPVVYYGSFNNSRL 356 (498)
Q Consensus 334 i~lfk~~~~~~~~y~g~~~~~~L 356 (498)
+++++++...-..-..+++.+.|
T Consensus 82 ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEEECCEEEEECccccCCHHhc
Confidence 99999753221122445566555
No 367
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=71.21 E-value=20 Score=39.13 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHH
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~ 361 (498)
..+.+.|+|...|+.+++.+++.....+.|.++.+.|.++|+
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 568899999999999777554544455689999999999987
No 368
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=71.01 E-value=5.6 Score=37.64 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhH-cCChhhh
Q 010886 46 KPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYEL-LTDPLWK 93 (498)
Q Consensus 46 ~~~a~~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~-L~d~~~r 93 (498)
+++||.+||.+|+.++..+|- ++.+.-.+|..||+. |++..+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----gd~~~~~~IEaAYD~ILM~rL~~ 44 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----GDEKSREAIEAAYDAILMERLRQ 44 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999883 456678889999994 5544433
No 369
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=64.78 E-value=21 Score=39.10 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=43.8
Q ss_pred cceEEEEEeccc--ccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhc
Q 010886 306 YASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 306 ~~~f~~v~~~~~--~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
++..-.++++.. +..++.++||+-+.|++++|..++.++....|-++.+.+.+++++.
T Consensus 508 ~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 508 DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 344455554433 3477899999999999999997776666678989999999998764
No 370
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=62.78 E-value=11 Score=31.99 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=38.3
Q ss_pred ccccCCCcEEEEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchh--hhHHHHhCCCCcccceeeeeEEEEeCC
Q 010886 148 SIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLVAFPP 225 (498)
Q Consensus 148 ~~v~~~~~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~--~~~l~~~~~~~~~~~I~~~PTl~~f~~ 225 (498)
+.++++. +|.|-.+||..|+++.-.|.+ +....++..+|-.++.. +..|.+--+ -+.+|.+ |.+
T Consensus 9 ~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg------~~tvP~v--FI~ 74 (104)
T KOG1752|consen 9 KMISENP--VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTG------QRTVPNV--FIG 74 (104)
T ss_pred HHhhcCC--EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcC------CCCCCEE--EEC
Confidence 3444444 477899999999998777766 33334666777654322 122222223 4578875 455
Q ss_pred C
Q 010886 226 G 226 (498)
Q Consensus 226 g 226 (498)
|
T Consensus 75 G 75 (104)
T KOG1752|consen 75 G 75 (104)
T ss_pred C
Confidence 5
No 371
>PF13728 TraF: F plasmid transfer operon protein
Probab=62.64 E-value=46 Score=31.92 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=46.0
Q ss_pred EEEEEecCCC---CCcHHHHHHHHhccccceEEEEEecc---------cccHHHHHHcCCCCCCEEEEEeCCCCce-eee
Q 010886 281 KVIFFSKTGE---RASPFVRQISRNYWAYASFAFVLWRE---------EESSIWWNTFEVESAPAIVFLKDPGVKP-VVY 347 (498)
Q Consensus 281 ~vl~f~~~~~---~~~~~~~~~A~~~~~~~~f~~v~~~~---------~~~~~l~~~f~V~~~Pti~lfk~~~~~~-~~y 347 (498)
+++||.+.|. ...+.++..+.+| ...+..|.... ..+..+++++||+..|++++...++.+. .+-
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEe
Confidence 4445544332 2345666677665 33334443221 1236689999999999999998866433 233
Q ss_pred cCCCChhHHHH
Q 010886 348 YGSFNNSRLSE 358 (498)
Q Consensus 348 ~g~~~~~~L~~ 358 (498)
.|-++.++|.+
T Consensus 202 ~G~~s~~~L~~ 212 (215)
T PF13728_consen 202 QGFMSLDELED 212 (215)
T ss_pred eecCCHHHHHH
Confidence 77788777754
No 372
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=62.20 E-value=29 Score=29.78 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=18.2
Q ss_pred HHHHHHcCCCCCCEEEEEeCCC
Q 010886 320 SIWWNTFEVESAPAIVFLKDPG 341 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~ 341 (498)
..+.+.|+|.+.|+++++.+++
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G 110 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADG 110 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 4578899999999999997544
No 373
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=61.24 E-value=57 Score=26.48 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=33.1
Q ss_pred HHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 010886 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (498)
Q Consensus 294 ~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~ 355 (498)
+.+..++..+ +.+.+..+... +..+++++|||.+.|++++ + + ...+.|..+.++
T Consensus 32 ~~~~~l~~~~-~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi--d-G--~~~~~G~~~~~e 85 (89)
T cd03026 32 QALNLMAVLN-PNIEHEMIDGA--LFQDEVEERGIMSVPAIFL--N-G--ELFGFGRMTLEE 85 (89)
T ss_pred HHHHHHHHHC-CCceEEEEEhH--hCHHHHHHcCCccCCEEEE--C-C--EEEEeCCCCHHH
Confidence 3445565543 35666666532 2367999999999999975 3 2 234567554444
No 374
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.16 E-value=61 Score=32.83 Aligned_cols=99 Identities=10% Similarity=0.203 Sum_probs=58.5
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEecC---CCC-----CcHHHHHHHHhccc--------cceEEEEEecccccHHHHHH
Q 010886 262 YTKESMGKNFLAKTGPHKVKVIFFSKT---GER-----ASPFVRQISRNYWA--------YASFAFVLWREEESSIWWNT 325 (498)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~---~~~-----~~~~~~~~A~~~~~--------~~~f~~v~~~~~~~~~l~~~ 325 (498)
.++++ ...|+...+.|...+++|+.. ..| ...++..+|+.++. ++-|..|+.. +.+++.+.
T Consensus 45 ~n~d~-~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~--e~p~~Fq~ 121 (331)
T KOG2603|consen 45 MNDDK-FSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD--ESPQVFQQ 121 (331)
T ss_pred ecCcc-hhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc--ccHHHHHH
Confidence 44444 677877555566677777631 111 12233335554443 2345566533 35889999
Q ss_pred cCCCCCCEEEEEeCCCCce---eeecC---CCChhHHHHHHHhc
Q 010886 326 FEVESAPAIVFLKDPGVKP---VVYYG---SFNNSRLSEVMEQN 363 (498)
Q Consensus 326 f~V~~~Pti~lfk~~~~~~---~~y~g---~~~~~~L~~fi~~~ 363 (498)
+++++.|.+++|++....+ ..+++ ....+.+.+|+++-
T Consensus 122 l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 122 LNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred hcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 9999999999997744322 22211 13478899998763
No 375
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=60.68 E-value=7.4 Score=39.91 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCC-------ChHHHHHHHHhhhhHcCChhhhhcccccC
Q 010886 49 SSVEQVKEAYEKFSSKWNSGEEI-------PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (498)
Q Consensus 49 a~~~~ik~ayr~l~~~~HPD~~~-------~~~~~f~~i~~ay~~L~d~~~r~~yd~~g 100 (498)
++..+|+.+|++.++..||++.. ...+.+.+|.+||++|++.+.|..+|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 56778999999999999999652 34556999999999999977777777654
No 376
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=57.87 E-value=1.2e+02 Score=26.01 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=31.0
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCc---eeeecCCCChhHHHHHHHh
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVK---PVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~---~~~y~g~~~~~~L~~fi~~ 362 (498)
..++..+++.++|+++++-..+.+ -....|..+.++|...++.
T Consensus 66 ~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 66 YRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred HHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHH
Confidence 669999999999999888432222 1235899998887776653
No 377
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=57.80 E-value=13 Score=31.84 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.0
Q ss_pred ceEEEEEecccccHHHHHHcCCCC--CCEEEEEeCCC
Q 010886 307 ASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPG 341 (498)
Q Consensus 307 ~~f~~v~~~~~~~~~l~~~f~V~~--~Pti~lfk~~~ 341 (498)
..|..+.... +...+.+.|++.+ .||+++|.+.+
T Consensus 52 ~~fv~v~vd~-~~~~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 52 HNFVMVNLED-DEEPKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred CcEEEEEecC-CCCchhhhcccCCCccceEEEECCCC
Confidence 4566665433 2233557888876 89999997543
No 378
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=57.11 E-value=15 Score=31.52 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCC---CC----ChHHHHHHHHhhhhHcCCh
Q 010886 47 PYSSVEQVKEAYEKFSSKWNSGE---EI----PSTADFLKIQYAYELLTDP 90 (498)
Q Consensus 47 ~~a~~~~ik~ayr~l~~~~HPD~---~~----~~~~~f~~i~~ay~~L~d~ 90 (498)
+..+..++|.|.|.+-++.|||. .| -+.+-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45677889999999999999994 23 1334477777777766644
No 379
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=57.01 E-value=53 Score=24.42 Aligned_cols=40 Identities=23% Similarity=0.114 Sum_probs=25.9
Q ss_pred HHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEE
Q 010886 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (498)
Q Consensus 294 ~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~l 336 (498)
+.+..++.. ...+.+..++.. +.+++.+++|+.+.|++++
T Consensus 19 ~~l~~l~~~-~~~i~~~~id~~--~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 19 QAANRIAAL-NPNISAEMIDAA--EFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred HHHHHHHHh-CCceEEEEEEcc--cCHhHHHHcCCcccCEEEE
Confidence 344444443 234666666532 2367999999999999876
No 380
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=56.39 E-value=91 Score=24.20 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=25.8
Q ss_pred cHHHHHHcCCCCCCEEEEEeCCCCceeeecC-CCChhHHHHHHH
Q 010886 319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYG-SFNNSRLSEVME 361 (498)
Q Consensus 319 ~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g-~~~~~~L~~fi~ 361 (498)
.+++ .+|||.+.|++++ ++ .+.|.| ..+.+.|.+||+
T Consensus 39 ~~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 39 FEEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHHH
T ss_pred HHHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHhC
Confidence 3566 9999999999976 22 467788 556788888874
No 381
>PF13446 RPT: A repeated domain in UCH-protein
Probab=56.02 E-value=11 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHh
Q 010886 37 PSHYDALGIKPYSSVEQVKEAYEKFSS 63 (498)
Q Consensus 37 ~d~y~ilgv~~~a~~~~ik~ayr~l~~ 63 (498)
.+-|+.||++++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999999876
No 382
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=53.27 E-value=79 Score=26.07 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=38.5
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCC-CCceeeecCCCC
Q 010886 279 KVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFN 352 (498)
Q Consensus 279 ~~~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~-~~~~~~y~g~~~ 352 (498)
+.++.+|.++.....-.++.+|..++++..|-... .+. .....- ..+.+++|++. ......|.|+++
T Consensus 18 r~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~-G~~-----~~~~~~-~~~~~i~frp~~~~~~~~y~G~~t 85 (91)
T cd03070 18 RNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGF-GDV-----TKPERP-PGDNIIYFPPGHNAPDMVYLGSLT 85 (91)
T ss_pred ceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEe-ccc-----cccccC-CCCCeEEECCCCCCCceEEccCCC
Confidence 35566665544344556677898899888774432 221 111111 23456667765 444488999885
No 383
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.60 E-value=32 Score=31.40 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=26.3
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhH
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~ 355 (498)
++|+++|+|++.|++++|...+..-....|-+..+.
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~ 140 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQ 140 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHH
Confidence 689999999999999999765443233366666554
No 384
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=50.59 E-value=8.2 Score=35.77 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=25.8
Q ss_pred EEecCCCCCCCCChHHHHHHHHHhhccceEEEEE
Q 010886 159 QVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE 192 (498)
Q Consensus 159 ~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vd 192 (498)
.|..|.|+.|-.++|.|.++..++.+.+.+--|=
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEE
Confidence 5889999999999999999999999876444333
No 385
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.44 E-value=43 Score=30.58 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=43.3
Q ss_pred CCcEEEEEe-cCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCC
Q 010886 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (498)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~ 207 (498)
++.+++.|| ..+++-|..-+-.|++.-.+++.. +.|..|..+....++..+++++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 557788888 467888988888888888888775 5777788776667777889887
No 386
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=49.97 E-value=49 Score=31.74 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=49.6
Q ss_pred EEEEEEecC---CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCCCce--e----eecCC
Q 010886 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--V----VYYGS 350 (498)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~~~~--~----~y~g~ 350 (498)
.+|.+|.+- ++.....+.-+|+.| ..++|..+..+.. ..-.+|..+..|++++|+.++-.. + .+..+
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~---gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNT---GASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeeccc---cchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 455556542 122233445577776 4678888765443 255678888899999999765321 1 12334
Q ss_pred CChhHHHHHHHhcc
Q 010886 351 FNNSRLSEVMEQNK 364 (498)
Q Consensus 351 ~~~~~L~~fi~~~~ 364 (498)
+...+|..|++.+.
T Consensus 238 ffa~dle~FL~e~g 251 (273)
T KOG3171|consen 238 FFAGDLESFLNEYG 251 (273)
T ss_pred hhhhhHHHHHHHcC
Confidence 56677899998753
No 387
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=47.80 E-value=21 Score=31.63 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=27.2
Q ss_pred HHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHH
Q 010886 202 LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (498)
Q Consensus 202 l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k 251 (498)
.+++.+ |.+.||+++ +|. .+.|..+.++|.+.|.+
T Consensus 128 ~~~~~~------i~~tPt~~i--nG~-------~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 128 LARQLG------ITGTPTFFI--NGK-------YVVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHT-------SSSSEEEE--TTC-------EEETTTSHHHHHHHHHH
T ss_pred HHHHcC------CccccEEEE--CCE-------EeCCCCCHHHHHHHHcC
Confidence 667777 999999987 664 46789999999988754
No 388
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=46.94 E-value=47 Score=26.52 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=15.1
Q ss_pred heeeeccCCceeeeeecccc
Q 010886 472 YVDFFLHSDLFVLWLLFPSM 491 (498)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~ 491 (498)
+...|..+.+|.++|++|..
T Consensus 74 l~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 74 LLKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp HHHHTT-TSSSEEEEEETTS
T ss_pred HHHHCCCCcCCEEEEECCCC
Confidence 45567888899999999864
No 389
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=45.63 E-value=59 Score=28.05 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCCCEEEEEeCCC
Q 010886 320 SIWWNTFEVESAPAIVFLKDPG 341 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~ 341 (498)
..+.+.|+|.+.|+++++.+++
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G 110 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDG 110 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 3567789999999999996543
No 390
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=45.34 E-value=1.9e+02 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=14.5
Q ss_pred HcCCCCCCEEEEEeCCCC
Q 010886 325 TFEVESAPAIVFLKDPGV 342 (498)
Q Consensus 325 ~f~V~~~Pti~lfk~~~~ 342 (498)
.||+.++|+++++.+.+.
T Consensus 75 ~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred hcCCCCCCEEEEECCCCC
Confidence 468899999999987544
No 391
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=44.65 E-value=58 Score=30.78 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=43.2
Q ss_pred CcEEEEEEecC---CCCCcHHHHHHHHhccccceEEEEEecccccHHHHHHcCCCCCCEEEEEeCCC
Q 010886 278 HKVKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (498)
Q Consensus 278 ~~~~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~~~~l~~~f~V~~~Pti~lfk~~~ 341 (498)
.++++-||-+. |+-....+..+|..+- ..+|..|+... .+-++.+++|.-.|+|.+|+++-
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~--~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEK--APFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEeccc--CceeeeeeeeeEeeeEEEEEcCE
Confidence 45666666543 3445566777887754 45788876544 36789999999999999999754
No 392
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=44.53 E-value=1e+02 Score=26.10 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=25.2
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHH
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L 356 (498)
..+++.|++...|+.+++.+.+.....+.|.++.+.|
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred chHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 4578889999999766665444444556787776543
No 393
>PHA02125 thioredoxin-like protein
Probab=44.11 E-value=1.3e+02 Score=23.14 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.3
Q ss_pred cHHHHHHcCCCCCCEEE
Q 010886 319 SSIWWNTFEVESAPAIV 335 (498)
Q Consensus 319 ~~~l~~~f~V~~~Pti~ 335 (498)
..+++++|+|.+.||++
T Consensus 35 ~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 35 GVELTAKHHIRSLPTLV 51 (75)
T ss_pred CHHHHHHcCCceeCeEE
Confidence 47899999999999987
No 394
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=43.85 E-value=33 Score=26.46 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=42.9
Q ss_pred EecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccC
Q 010886 160 VYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG 238 (498)
Q Consensus 160 FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G 238 (498)
++.++|+.|++.. ++-.+++. ..+-.|+..+. ...+.+..+ -..+|++. .+|...
T Consensus 2 y~~~~Sp~~~kv~-----~~l~~~~i~~~~~~v~~~~~--~~~~~~~~p------~~~vPvL~--~~g~~l--------- 57 (75)
T PF13417_consen 2 YGFPGSPYSQKVR-----LALEEKGIPYELVPVDPEEK--RPEFLKLNP------KGKVPVLV--DDGEVL--------- 57 (75)
T ss_dssp EEETTSHHHHHHH-----HHHHHHTEEEEEEEEBTTST--SHHHHHHST------TSBSSEEE--ETTEEE---------
T ss_pred CCcCCChHHHHHH-----HHHHHcCCeEEEeccCcccc--hhHHHhhcc------cccceEEE--ECCEEE---------
Confidence 5678999887654 33444554 45556665433 234555555 45999997 445431
Q ss_pred CCCHHHHHHHHHHH
Q 010886 239 ELSVDAVTDWFATA 252 (498)
Q Consensus 239 ~r~~~~Iv~fv~k~ 252 (498)
.+..+|++|+.++
T Consensus 58 -~dS~~I~~yL~~~ 70 (75)
T PF13417_consen 58 -TDSAAIIEYLEER 70 (75)
T ss_dssp -ESHHHHHHHHHHH
T ss_pred -eCHHHHHHHHHHH
Confidence 3678899999887
No 395
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=43.57 E-value=1.2e+02 Score=24.24 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=17.9
Q ss_pred heeeeccCCceeeeeecccceee
Q 010886 472 YVDFFLHSDLFVLWLLFPSMSMI 494 (498)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~ 494 (498)
+.+.|....+|.++|++|-.-++
T Consensus 89 ~~~~~~~~~~P~~~l~d~~g~v~ 111 (116)
T cd02966 89 LAKAYGVRGLPTTFLIDRDGRIR 111 (116)
T ss_pred HHHhcCcCccceEEEECCCCcEE
Confidence 55667888999999999976443
No 396
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=42.75 E-value=1.1e+02 Score=27.28 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=46.0
Q ss_pred cEEEEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCc
Q 010886 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM 233 (498)
Q Consensus 155 ~~lV~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~ 233 (498)
.-++.+|+|.||-|. +|.+.- +.. +.|..+..+ ....+-+++++. +.-++-=|.++ +|
T Consensus 26 ~~~~vyksPnCGCC~----~w~~~m---k~~Gf~Vk~~~~~---d~~alK~~~gIp--~e~~SCHT~VI--~G------- 84 (149)
T COG3019 26 TEMVVYKSPNCGCCD----EWAQHM---KANGFEVKVVETD---DFLALKRRLGIP--YEMQSCHTAVI--NG------- 84 (149)
T ss_pred eeEEEEeCCCCccHH----HHHHHH---HhCCcEEEEeecC---cHHHHHHhcCCC--hhhccccEEEE--cC-------
Confidence 456889999999995 454443 332 456666655 323466777632 12234444432 33
Q ss_pred ccccCCCCHHHHHHHHHHH
Q 010886 234 TRFEGELSVDAVTDWFATA 252 (498)
Q Consensus 234 ~~Y~G~r~~~~Iv~fv~k~ 252 (498)
.-.+|-..+++|..++.+.
T Consensus 85 y~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 85 YYVEGHVPAEAIARLLAEK 103 (149)
T ss_pred EEEeccCCHHHHHHHHhCC
Confidence 1346888899998888664
No 397
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=42.26 E-value=1.1e+02 Score=26.92 Aligned_cols=68 Identities=13% Similarity=0.272 Sum_probs=41.3
Q ss_pred CCcEEEEEEecCCCC----CcHHHHHHHHhccccceEEEEEecccc-cHHHHHHcCCCCCCEEEEEeCCCCceeee
Q 010886 277 PHKVKVIFFSKTGER----ASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVY 347 (498)
Q Consensus 277 ~~~~~vl~f~~~~~~----~~~~~~~~A~~~~~~~~f~~v~~~~~~-~~~l~~~f~V~~~Pti~lfk~~~~~~~~y 347 (498)
..+++|+=|+...+. ....+...|.... +|+.+...+-+ .++..+-|++...|++++|-.+..-.+++
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs---nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~ 94 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVS---NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDL 94 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHh---hceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEee
Confidence 456889999865321 1122233444433 45555544443 47888999999999998886654444444
No 398
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=40.78 E-value=1.9e+02 Score=26.07 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=40.9
Q ss_pred cHHHHHHHHhccccceEEEEEecccc----------cHHH-HHHc---CCCCCCEEEEEeCCCCc-eeeecCCCChhHHH
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEE----------SSIW-WNTF---EVESAPAIVFLKDPGVK-PVVYYGSFNNSRLS 357 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~----------~~~l-~~~f---~V~~~Pti~lfk~~~~~-~~~y~g~~~~~~L~ 357 (498)
.|.+..++.++. ..+..+...+.. .... ...| ++...|+.+++.+.+.. ...+.|.++.+.|.
T Consensus 69 ~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~ 146 (153)
T TIGR02738 69 APVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELA 146 (153)
T ss_pred HHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHH
Confidence 466666666552 344444432211 1223 3445 78889999999765443 23568998988888
Q ss_pred HHHHh
Q 010886 358 EVMEQ 362 (498)
Q Consensus 358 ~fi~~ 362 (498)
+.|..
T Consensus 147 ~~I~~ 151 (153)
T TIGR02738 147 NRMDE 151 (153)
T ss_pred HHHHH
Confidence 87764
No 399
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=40.20 E-value=47 Score=30.36 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=32.8
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhc
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
..+.+.|++.+.|+.+++.+++.....+.|..+.+++.+++.+.
T Consensus 127 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 45788899999997777654454445567888999999988763
No 400
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=38.74 E-value=1.6e+02 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCcee-eecCCCChhHHHHHH
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSEVM 360 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~-~y~g~~~~~~L~~fi 360 (498)
..+++++||+..|++++...++.+.. +=.|-++.++|.+=|
T Consensus 203 ~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri 244 (256)
T TIGR02739 203 SGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERI 244 (256)
T ss_pred hHHHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHH
Confidence 45789999999999999987654432 226778888775544
No 401
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=38.13 E-value=88 Score=26.73 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=29.5
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHhhcccccccccccCCCchHHHHhccC-CceEEEEEeCccCch
Q 010886 397 YCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRN-KRLTFAWLDGEAQDV 462 (498)
Q Consensus 397 lcvi~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~f~wvd~~~q~~ 462 (498)
+.+.++-+.+++--++.+.++++|+ .++. ..+.|+|||-..-+-
T Consensus 23 ~IvAFaee~dpdG~eFl~ilk~vA~----------------------~nt~np~LsiIWIDPD~FPl 67 (120)
T cd03074 23 HIVAFAEEEDPDGYEFLEILKEVAR----------------------DNTDNPDLSIIWIDPDDFPL 67 (120)
T ss_pred eEEEEeccCCccHHHHHHHHHHHHH----------------------hcCcCCCceEEEECCccCch
Confidence 4444444455566677788888888 4443 369999999876555
No 402
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=37.21 E-value=1.3e+02 Score=26.62 Aligned_cols=56 Identities=14% Similarity=0.322 Sum_probs=36.5
Q ss_pred cccCCCCCCC-----HHHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcCChhhhhcccccCC
Q 010886 41 DALGIKPYSS-----VEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGI 101 (498)
Q Consensus 41 ~ilgv~~~a~-----~~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~d~~~r~~yd~~g~ 101 (498)
+.|.++++.. +++.|+.=+.-.-+|+|+..-....-|..++.|...|. .-|-.||.
T Consensus 50 ~~i~lpkd~p~~~~a~~~ar~~indyvsrYRr~~~v~g~~SFttm~TALNsLA-----GHY~sy~~ 110 (135)
T TIGR03044 50 EAIDLPDDDPNKSEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQTALNSLA-----GHYKSYAN 110 (135)
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCcCCcccHHHHHHHHHHHH-----HHhccCCC
Confidence 4566665432 44466666666778899865455667888888888775 44555553
No 403
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=37.01 E-value=58 Score=24.62 Aligned_cols=51 Identities=25% Similarity=0.248 Sum_probs=28.7
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEE
Q 010886 158 IQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (498)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~ 221 (498)
+.|+.+||+.|.+..- +-..+|. ..+..||-... ..++.+..+ ...+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~-----~L~~~gl~~e~~~v~~~~~--~~~~~~~np------~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARM-----ALLLAGITVELREVELKNK--PAEMLAASP------KGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHH-----HHHHcCCCcEEEEeCCCCC--CHHHHHHCC------CCCCCEEE
Confidence 4567899999976542 2222343 45555554322 123444445 45899985
No 404
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=36.76 E-value=1.6e+02 Score=35.39 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=33.7
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhc
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
..+.++|+|...|+.+++.+.+.....+.|....+.|.+++...
T Consensus 492 ~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 492 MYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred hHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 34677899999999999965555445568888888888888753
No 405
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=36.76 E-value=43 Score=29.09 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=26.0
Q ss_pred HHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 201 ~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
+++++++ |.|+||+++ +|. .+.|..+.+.|.+.+
T Consensus 120 ~~~~~~g------i~gtPt~~v--~g~-------~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALG------ITGTPAFII--GDT-------VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcC------CCcCCeEEE--CCE-------EecCCCCHHHHHHHh
Confidence 4677778 999999876 442 678998888887764
No 406
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=35.75 E-value=1e+02 Score=23.84 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=36.5
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccch-hhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccc
Q 010886 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (498)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~-~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y 236 (498)
..++.++|+.|.+..-..+ + +| +.+-.++..... ...++-+..+ -.++|+++.-.+|..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~----~-~g-i~y~~~~v~~~~~~~~~~~~~~p------~~~vP~l~~~~~~~~-------- 62 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLT----E-LE-LDVILYPCPKGSPKRDKFLEKGG------KVQVPYLVDPNTGVQ-------- 62 (77)
T ss_pred eEecCCCCchHHHHHHHHH----H-cC-CcEEEEECCCChHHHHHHHHhCC------CCcccEEEeCCCCeE--------
Confidence 3456689999976442111 1 22 233335544221 1122333334 348999854222321
Q ss_pred cCCCCHHHHHHHHHHH
Q 010886 237 EGELSVDAVTDWFATA 252 (498)
Q Consensus 237 ~G~r~~~~Iv~fv~k~ 252 (498)
-.....|++|+.+.
T Consensus 63 --l~es~~I~~yL~~~ 76 (77)
T cd03041 63 --MFESADIVKYLFKT 76 (77)
T ss_pred --EEcHHHHHHHHHHh
Confidence 13467888888654
No 407
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=35.23 E-value=72 Score=29.52 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=32.0
Q ss_pred HHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHh
Q 010886 321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 321 ~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~ 362 (498)
.+...||+.+.|+.+++-+.+.....+.|.++.+.+.++|+.
T Consensus 133 ~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 133 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred cHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 466789999999877776555545566899998888888765
No 408
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=33.07 E-value=1.3e+02 Score=24.75 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=20.6
Q ss_pred cHHHHHHHHhccccceEEEEEecccc-cHHHHHHcCCCCCCEE
Q 010886 293 SPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAI 334 (498)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~-~~~l~~~f~V~~~Pti 334 (498)
.+.+..++..+.+...+..+...+.+ ...+++++++..+|++
T Consensus 40 ~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 40 LPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred hHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 34555555555444444433211111 2456777777666754
No 409
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=30.94 E-value=32 Score=31.81 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=15.0
Q ss_pred hHHHHhCCCCcccceeeeeEEEEeCC
Q 010886 200 THLAERKPIGQIFFRRGLPSLVAFPP 225 (498)
Q Consensus 200 ~~l~~~~~~~~~~~I~~~PTl~~f~~ 225 (498)
..++++.+ |+++||+++|..
T Consensus 137 ~~la~~m~------I~~~Ptlvi~~~ 156 (176)
T PF13743_consen 137 QQLAREMG------ITGFPTLVIFNE 156 (176)
T ss_dssp HHHHHHTT-------SSSSEEEEE--
T ss_pred HHHHHHcC------CCCCCEEEEEec
Confidence 44888888 999999999983
No 410
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=30.45 E-value=80 Score=30.62 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=31.2
Q ss_pred cHHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhc
Q 010886 319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 319 ~~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
+..+++++||++.|+++ +.++. ...|..+.+.|.++|+..
T Consensus 191 ~~~la~~lgi~gTPtiv-~~~G~----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 191 HYALGVQFGVQGTPAIV-LSNGT----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHHHHcCCccccEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence 36689999999999988 54432 337888889999999864
No 411
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.46 E-value=73 Score=29.07 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=27.2
Q ss_pred HHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHH
Q 010886 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (498)
Q Consensus 201 ~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv 249 (498)
..+.++| |.|+||+++ +|+ . .+.|....+.|.+.+
T Consensus 158 ~~a~~~g------v~GvP~~vv--~g~-~-----~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 158 AEARQLG------VFGVPTFVV--NGK-Y-----RFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHTT------CSSSSEEEE--TTT-E-----EEESCSSHHHHHHHH
T ss_pred HHHHHcC------CcccCEEEE--CCE-E-----EEECCCCHHHHHHHh
Confidence 3677788 999999998 554 2 678988888887665
No 412
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=98 Score=24.40 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHhhc----CCCC
Q 010886 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKW----NSGE 69 (498)
Q Consensus 36 ~~d~y~ilgv~~~a~~~~ik~ayr~l~~~~----HPD~ 69 (498)
|+|.-+++|+++-|+..||+.|-++.+++. ||..
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence 567788999999999999999987666665 5553
No 413
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=1.4e+02 Score=28.75 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=29.1
Q ss_pred HHHHHHcCCCCCCEEEEEeCCCCceeeecCCCChhHHHHHHHhc
Q 010886 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (498)
Q Consensus 320 ~~l~~~f~V~~~Pti~lfk~~~~~~~~y~g~~~~~~L~~fi~~~ 363 (498)
..+...+||.+.|++++-. . .+.|..+...|.+.|...
T Consensus 205 ~~~a~~~gv~gTPt~~v~~---~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGTPTFIVNG---K---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcCCeEEECC---e---eecCCCCHHHHHHHHHHh
Confidence 4578899999999988742 2 567887788888887653
No 414
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=26.60 E-value=1.5e+02 Score=25.38 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEEEEeCCCch--hhHHHHHHHHHHHHh
Q 010886 397 YCVILAGRLSP--ELNKMRETIRRVQET 422 (498)
Q Consensus 397 lcvi~~~~~~~--~~~~~~~~l~~~a~~ 422 (498)
-|++++.++.+ +.+..++.+..+|++
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~ 43 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEK 43 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHH
Confidence 48888886543 367778888888883
No 415
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=25.10 E-value=2.4e+02 Score=23.98 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCC
Q 010886 170 QFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (498)
Q Consensus 170 ~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~ 225 (498)
.+.+....+.+.+...-..+.|..+ + .+-++|+ |+.+||+++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~Id--P---~~F~~y~------I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQID--P---RLFRQYN------ITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcceeEC--h---hHHhhCC------ceEcCEEEEEcC
Confidence 6777777777666544323333333 2 3888888 999999999887
No 416
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=24.78 E-value=1.2e+02 Score=25.31 Aligned_cols=53 Identities=19% Similarity=0.428 Sum_probs=35.7
Q ss_pred CCCCCCCH-HHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhhHcCChhhhhccc-ccCCc
Q 010886 44 GIKPYSSV-EQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYD-VYGID 102 (498)
Q Consensus 44 gv~~~a~~-~~ik~ayr~l~~~~HPD~~~~~~~~f~~i~~ay~~L~d~~~r~~yd-~~g~~ 102 (498)
|++++... .++-+.++.+...+++ ++.+.+..+.+.| +.||.-+..|| .++..
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~----~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~~ 105 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG----GDPELLRGLAQMY--VEDPRFAAMYDKKFGPG 105 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------HHHHHHHHHHT--TSTHHHHHHHG-GGSTT
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHH--HcCHHHHhhccccCCHH
Confidence 55555543 3477788888887777 4566888999998 68899999998 66653
No 417
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.75 E-value=86 Score=28.69 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=24.0
Q ss_pred EEEEecCCCCCCCCChHHHHHHHHHhh
Q 010886 157 LIQVYSDGSYLCGQFSGAWKTIAALLE 183 (498)
Q Consensus 157 lV~FYapwC~~C~~l~p~~~~~A~~l~ 183 (498)
+..|+.+.|+.|-...+.++++++.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567888999999999999999999984
No 418
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=24.47 E-value=3.5e+02 Score=26.63 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=29.0
Q ss_pred HHHHHcCCCCCCEEEEEeCCCCcee-eecCCCChhHHHHHH
Q 010886 321 IWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSEVM 360 (498)
Q Consensus 321 ~l~~~f~V~~~Pti~lfk~~~~~~~-~y~g~~~~~~L~~fi 360 (498)
...+++||+.+|++++....+.+.. +-.|-++.++|.+=|
T Consensus 197 gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri 237 (248)
T PRK13703 197 GQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRF 237 (248)
T ss_pred hHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHH
Confidence 3668999999999999987654432 226778888775544
No 419
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.82 E-value=1.3e+02 Score=29.16 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=29.6
Q ss_pred HHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccccCCCCHHHHHHHHHHHh
Q 010886 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (498)
Q Consensus 201 ~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y~G~r~~~~Iv~fv~k~~ 253 (498)
..+++.| |+++||+++ +|+. .-+|..+.+-+..-+.+.+
T Consensus 175 ~~A~e~g------I~gVP~fv~--d~~~------~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 175 AAAQEMG------IRGVPTFVF--DGKY------AVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred HHHHHCC------CccCceEEE--cCcE------eecCCCCHHHHHHHHHHHH
Confidence 3567777 999999988 4422 5679999888888887763
No 420
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=23.43 E-value=6.1e+02 Score=23.66 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=32.3
Q ss_pred HHHHHHcCC--CCCCEEEEEeCCCCce-eeecCCCChhHHHHHHHh
Q 010886 320 SIWWNTFEV--ESAPAIVFLKDPGVKP-VVYYGSFNNSRLSEVMEQ 362 (498)
Q Consensus 320 ~~l~~~f~V--~~~Pti~lfk~~~~~~-~~y~g~~~~~~L~~fi~~ 362 (498)
..+.+.|++ ...|+.+++..++... ..+.|.++.+.|.+.|..
T Consensus 124 ~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 124 DVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDT 169 (181)
T ss_pred hHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHH
Confidence 346778995 5899999997766553 357899998888777765
No 421
>PF11539 DUF3228: Protein of unknown function (DUF3228); InterPro: IPR021610 This family of proteins has no known function. ; PDB: 2PD0_B 4FBD_B.
Probab=23.22 E-value=15 Score=34.41 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=17.7
Q ss_pred EecCCCCcccc----cCCCcEEEEEecCCCCC
Q 010886 140 VVTSEDFPSIF----HDSKPWLIQVYSDGSYL 167 (498)
Q Consensus 140 ~Lt~~nF~~~v----~~~~~~lV~FYapwC~~ 167 (498)
..+.+.|.+.| .....-||.=|||.|.|
T Consensus 24 ~~~ke~F~~kvne~~~~~~~~l~dGYAPFCKH 55 (197)
T PF11539_consen 24 PCDKEEFVEKVNEIYKEGPAKLVDGYAPFCKH 55 (197)
T ss_dssp -S-HHHHHHHHHHHHHCCT--EEE-SSTTEEE
T ss_pred ccCHHHHHHHHHHHHhcCCCccccccCcceee
Confidence 36677777766 34567799999999976
No 422
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=23.17 E-value=1.2e+02 Score=21.60 Aligned_cols=53 Identities=19% Similarity=0.061 Sum_probs=26.9
Q ss_pred EEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEE
Q 010886 159 QVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (498)
Q Consensus 159 ~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~ 222 (498)
.|+.++|+.|.+..-..+.. +-...+..++-.+.... .+-+..+ -..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~-~~~~~~~------~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK----GLPYELVPVDLGEGEQE-EFLALNP------LGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc----CCCcEEEEeCCCCCCCH-HHHhcCC------CCCCCEEEE
Confidence 57789999997655333322 11134444443322111 1333334 458898754
No 423
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.11 E-value=1e+02 Score=27.69 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=33.2
Q ss_pred EEEEecC------CCCCCCCChHHHHHHHHHhhccceEEEEEcccchh-hhHHHHhCCCCcccceeeeeEEEEeCCC
Q 010886 157 LIQVYSD------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (498)
Q Consensus 157 lV~FYap------wC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~~~~~-~~~l~~~~~~~~~~~I~~~PTl~~f~~g 226 (498)
+|.|.++ +|++|++..-.+++. .+.+-.+|.+.++. ..+|-+..+.. ..-..+|.| |.+|
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~--~~~~tvPqV--FI~G 68 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAE--LKAVSLPRV--FVDG 68 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCC--CCCCCCCEE--EECC
Confidence 3556667 899997766554432 26788889875533 22344443310 001467765 4555
No 424
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=22.88 E-value=30 Score=28.77 Aligned_cols=31 Identities=0% Similarity=-0.243 Sum_probs=19.1
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHhhccceEEEEEcc
Q 010886 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG 194 (498)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~i~va~Vdc~ 194 (498)
..|+.|+|+.|++.....++. .+.+-.+|..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~ 32 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYL 32 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeec
Confidence 467889999998765333321 2445556654
No 425
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=21.12 E-value=33 Score=28.86 Aligned_cols=15 Identities=0% Similarity=-0.314 Sum_probs=11.9
Q ss_pred EEEecCCCCCCCCCh
Q 010886 158 IQVYSDGSYLCGQFS 172 (498)
Q Consensus 158 V~FYapwC~~C~~l~ 172 (498)
..|+.|+|+.|++..
T Consensus 2 ~iy~~~~C~~crka~ 16 (105)
T cd03035 2 TLYGIKNCDTVKKAR 16 (105)
T ss_pred EEEeCCCCHHHHHHH
Confidence 467889999997744
No 426
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=20.67 E-value=1.9e+02 Score=21.56 Aligned_cols=15 Identities=7% Similarity=-0.027 Sum_probs=11.2
Q ss_pred EEecCCCCCCCCChH
Q 010886 159 QVYSDGSYLCGQFSG 173 (498)
Q Consensus 159 ~FYapwC~~C~~l~p 173 (498)
.++.++|++|.+..-
T Consensus 3 Ly~~~~~p~~~rvr~ 17 (71)
T cd03037 3 LYIYEHCPFCVKARM 17 (71)
T ss_pred eEecCCCcHhHHHHH
Confidence 466789999986553
No 427
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=20.64 E-value=1.9e+02 Score=25.49 Aligned_cols=22 Identities=32% Similarity=0.819 Sum_probs=19.5
Q ss_pred cHHHHHHcCCCCCCEEEEEeCC
Q 010886 319 SSIWWNTFEVESAPAIVFLKDP 340 (498)
Q Consensus 319 ~~~l~~~f~V~~~Pti~lfk~~ 340 (498)
++.+.++|+|+..|++++.+++
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCC
Confidence 3679999999999999999875
No 428
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=20.18 E-value=1.1e+02 Score=19.35 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhcC
Q 010886 51 VEQVKEAYEKFSSKWN 66 (498)
Q Consensus 51 ~~~ik~ayr~l~~~~H 66 (498)
.++.|.+.|+.|+.||
T Consensus 10 ~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYH 25 (28)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4778999999999999
No 429
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=20.11 E-value=1.6e+02 Score=21.95 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=36.9
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHHhCCCCcccceeeeeEEEEeCCCCcCCCCcccc
Q 010886 158 IQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (498)
Q Consensus 158 V~FYapwC~~C~~l~p~~~~~A~~l~~~-i~va~Vdc~~~~~~~~l~~~~~~~~~~~I~~~PTl~~f~~g~~~~~~~~~Y 236 (498)
..|+.++|+.|++..-.. ..+|. .....+|.... ...+.+..+ ..++|++. .+|..
T Consensus 2 ~ly~~~~~~~~~~v~~~l-----~~~gi~~~~~~v~~~~~--~~~~~~~~p------~~~vP~l~--~~~~~-------- 58 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVL-----AEKGVSVEIIDVDPDNP--PEDLAELNP------YGTVPTLV--DRDLV-------- 58 (73)
T ss_pred EEEECCCChhHHHHHHHH-----HHcCCccEEEEcCCCCC--CHHHHhhCC------CCCCCEEE--ECCEE--------
Confidence 456788999997765332 22232 34444553321 122333344 44889774 23321
Q ss_pred cCCCCHHHHHHHHHHH
Q 010886 237 EGELSVDAVTDWFATA 252 (498)
Q Consensus 237 ~G~r~~~~Iv~fv~k~ 252 (498)
-.....|..|+.+.
T Consensus 59 --l~es~aI~~yL~~~ 72 (73)
T cd03059 59 --LYESRIIMEYLDER 72 (73)
T ss_pred --EEcHHHHHHHHHhh
Confidence 24567788887653
Done!