Query 010888
Match_columns 498
No_of_seqs 388 out of 3184
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738 AAA+-type ATPase [Post 100.0 1.8E-56 3.9E-61 444.2 28.5 306 188-495 181-491 (491)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.8E-47 4E-52 402.2 23.6 270 203-491 419-692 (693)
3 COG1222 RPT1 ATP-dependent 26S 100.0 2.5E-46 5.5E-51 370.0 23.9 249 209-476 142-394 (406)
4 KOG0739 AAA+-type ATPase [Post 100.0 1.8E-46 3.8E-51 361.7 20.9 297 196-495 111-438 (439)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 4.5E-46 9.8E-51 386.5 24.7 287 203-494 496-790 (802)
6 KOG0736 Peroxisome assembly fa 100.0 3E-45 6.5E-50 388.6 26.5 283 210-493 664-952 (953)
7 COG1223 Predicted ATPase (AAA+ 100.0 4.3E-44 9.4E-49 339.8 18.2 298 151-478 47-359 (368)
8 KOG0737 AAA+-type ATPase [Post 100.0 1.4E-42 3.1E-47 345.3 24.0 282 211-494 85-382 (386)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 4.6E-42 9.9E-47 356.8 22.1 281 212-495 184-517 (802)
10 KOG0734 AAA+-type ATPase conta 100.0 7.2E-40 1.6E-44 335.8 19.5 240 213-474 299-541 (752)
11 TIGR01243 CDC48 AAA family ATP 100.0 2E-38 4.4E-43 356.0 28.5 287 206-494 441-731 (733)
12 KOG0740 AAA+-type ATPase [Post 100.0 5.7E-39 1.2E-43 329.9 18.3 286 201-495 136-426 (428)
13 COG0464 SpoVK ATPases of the A 100.0 3.6E-36 7.8E-41 324.3 24.3 257 207-488 231-492 (494)
14 KOG0735 AAA+-type ATPase [Post 100.0 1.1E-35 2.4E-40 313.4 24.2 231 212-445 661-894 (952)
15 KOG0731 AAA+-type ATPase conta 100.0 1.3E-35 2.7E-40 321.5 22.6 243 212-474 305-553 (774)
16 KOG0727 26S proteasome regulat 100.0 1.6E-35 3.4E-40 280.4 20.3 246 210-474 147-396 (408)
17 PTZ00454 26S protease regulato 100.0 5.1E-35 1.1E-39 304.9 24.8 249 210-477 137-389 (398)
18 KOG0728 26S proteasome regulat 100.0 2.7E-35 5.8E-40 278.6 19.8 250 208-477 137-391 (404)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 2.2E-34 4.9E-39 306.2 27.9 255 212-491 222-483 (489)
20 KOG0726 26S proteasome regulat 100.0 1.3E-35 2.8E-40 285.9 15.9 246 210-474 177-426 (440)
21 KOG0652 26S proteasome regulat 100.0 2.2E-35 4.7E-40 280.6 17.0 248 210-476 163-414 (424)
22 PRK03992 proteasome-activating 100.0 2.2E-34 4.9E-39 300.7 24.6 254 209-481 122-379 (389)
23 KOG0729 26S proteasome regulat 100.0 2E-34 4.2E-39 274.8 17.7 247 209-475 168-419 (435)
24 COG0465 HflB ATP-dependent Zn 100.0 9E-34 1.9E-38 302.5 19.6 260 211-490 143-413 (596)
25 PTZ00361 26 proteosome regulat 100.0 4.2E-33 9E-38 292.5 22.5 247 210-475 175-425 (438)
26 TIGR01241 FtsH_fam ATP-depende 100.0 9.5E-33 2.1E-37 297.4 24.3 247 210-476 47-297 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 3.8E-31 8.3E-36 274.6 23.9 246 210-474 114-363 (364)
28 CHL00176 ftsH cell division pr 100.0 6.4E-31 1.4E-35 287.8 24.2 243 212-474 177-423 (638)
29 KOG0730 AAA+-type ATPase [Post 100.0 2E-31 4.4E-36 281.3 18.1 256 213-496 180-441 (693)
30 TIGR03689 pup_AAA proteasome A 100.0 3.1E-30 6.8E-35 274.3 23.3 271 207-493 171-499 (512)
31 TIGR01243 CDC48 AAA family ATP 100.0 4.8E-30 1E-34 288.4 24.4 279 212-494 172-458 (733)
32 KOG0651 26S proteasome regulat 100.0 1.2E-30 2.5E-35 253.9 15.5 248 210-476 124-375 (388)
33 PRK10733 hflB ATP-dependent me 100.0 7.5E-29 1.6E-33 273.8 24.4 246 212-477 146-395 (644)
34 KOG0732 AAA+-type ATPase conta 100.0 1.8E-29 3.8E-34 280.1 17.2 264 211-479 258-530 (1080)
35 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.5E-28 3.2E-33 282.7 18.4 204 248-477 1627-1880(2281)
36 KOG0741 AAA+-type ATPase [Post 100.0 8E-29 1.7E-33 254.6 14.1 271 212-486 213-502 (744)
37 PLN00020 ribulose bisphosphate 100.0 2.7E-27 5.9E-32 238.5 21.6 167 248-419 145-330 (413)
38 COG3829 RocR Transcriptional r 99.9 6.7E-25 1.5E-29 229.0 4.1 342 79-473 115-497 (560)
39 KOG0742 AAA+-type ATPase [Post 99.9 5.7E-21 1.2E-25 191.9 21.6 214 211-433 348-589 (630)
40 CHL00181 cbbX CbbX; Provisiona 99.9 5.4E-21 1.2E-25 191.9 19.8 214 218-442 23-260 (287)
41 TIGR02881 spore_V_K stage V sp 99.9 1.3E-20 2.8E-25 187.1 18.0 214 217-441 5-243 (261)
42 TIGR02880 cbbX_cfxQ probable R 99.9 1.4E-20 3E-25 189.0 17.5 213 219-442 23-259 (284)
43 KOG0736 Peroxisome assembly fa 99.8 1.7E-20 3.7E-25 200.7 18.0 242 249-495 429-678 (953)
44 PF00004 AAA: ATPase family as 99.8 1.5E-20 3.3E-25 165.5 14.4 130 254-385 1-132 (132)
45 KOG0744 AAA+-type ATPase [Post 99.8 3.4E-20 7.5E-25 181.9 12.2 186 215-401 139-342 (423)
46 KOG0735 AAA+-type ATPase [Post 99.8 1.8E-19 3.8E-24 191.4 17.3 239 218-480 408-654 (952)
47 KOG0743 AAA+-type ATPase [Post 99.8 2.5E-19 5.4E-24 183.9 16.7 225 214-448 197-435 (457)
48 PF05496 RuvB_N: Holliday junc 99.8 3E-18 6.6E-23 163.1 16.1 191 211-430 17-223 (233)
49 COG2256 MGS1 ATPase related to 99.8 2.1E-17 4.5E-22 167.3 18.4 213 212-478 18-242 (436)
50 TIGR02639 ClpA ATP-dependent C 99.7 6.3E-17 1.4E-21 182.1 21.5 176 204-401 168-360 (731)
51 PRK00080 ruvB Holliday junctio 99.7 1.4E-16 2.9E-21 163.5 21.5 219 212-477 19-253 (328)
52 TIGR02902 spore_lonB ATP-depen 99.7 7.3E-17 1.6E-21 175.1 20.5 255 172-475 14-333 (531)
53 TIGR00635 ruvB Holliday juncti 99.7 1.3E-16 2.8E-21 161.7 20.3 190 216-434 2-207 (305)
54 COG3604 FhlA Transcriptional r 99.7 4.1E-19 8.9E-24 183.5 1.9 220 212-451 217-456 (550)
55 COG2204 AtoC Response regulato 99.7 5.3E-19 1.1E-23 185.1 2.3 214 215-455 138-378 (464)
56 TIGR00763 lon ATP-dependent pr 99.7 4.2E-16 9.2E-21 176.4 21.8 232 219-473 321-585 (775)
57 PRK10820 DNA-binding transcrip 99.7 7.8E-18 1.7E-22 182.5 6.4 322 83-467 82-447 (520)
58 PRK14956 DNA polymerase III su 99.7 5.5E-16 1.2E-20 163.6 19.3 176 210-419 10-214 (484)
59 PRK12323 DNA polymerase III su 99.7 3.6E-16 7.9E-21 168.8 16.2 188 210-432 8-229 (700)
60 COG2255 RuvB Holliday junction 99.7 1.1E-15 2.5E-20 148.4 17.1 182 211-420 19-216 (332)
61 PRK07003 DNA polymerase III su 99.7 9E-16 2E-20 167.7 18.3 189 210-433 8-225 (830)
62 PRK11034 clpA ATP-dependent Cl 99.7 8.9E-16 1.9E-20 171.6 17.0 237 203-475 171-434 (758)
63 COG0464 SpoVK ATPases of the A 99.7 3E-15 6.6E-20 161.7 20.0 222 239-477 5-229 (494)
64 PRK14962 DNA polymerase III su 99.7 2.1E-15 4.5E-20 160.9 18.3 175 210-418 6-209 (472)
65 PRK13342 recombination factor 99.7 4.6E-15 1E-19 156.8 19.8 152 212-401 6-166 (413)
66 PRK14961 DNA polymerase III su 99.6 5.1E-15 1.1E-19 153.8 18.2 186 210-430 8-222 (363)
67 PRK14958 DNA polymerase III su 99.6 3.1E-15 6.8E-20 161.1 16.7 186 210-430 8-222 (509)
68 PRK14960 DNA polymerase III su 99.6 4.9E-15 1.1E-19 160.4 18.1 186 210-430 7-221 (702)
69 PLN03025 replication factor C 99.6 1.1E-14 2.3E-19 148.9 19.1 174 210-418 5-191 (319)
70 PRK07994 DNA polymerase III su 99.6 2.1E-14 4.6E-19 157.2 22.3 187 210-431 8-223 (647)
71 PRK14949 DNA polymerase III su 99.6 1.5E-14 3.2E-19 161.0 21.2 189 210-433 8-225 (944)
72 PRK04195 replication factor C 99.6 1E-14 2.2E-19 157.1 18.1 188 210-430 6-201 (482)
73 PTZ00112 origin recognition co 99.6 2.8E-14 6.2E-19 156.6 21.5 225 213-477 750-1009(1164)
74 PRK12402 replication factor C 99.6 2.3E-14 5.1E-19 146.8 19.7 179 210-417 7-216 (337)
75 TIGR00362 DnaA chromosomal rep 99.6 2E-14 4.4E-19 151.6 19.5 197 212-433 104-315 (405)
76 PRK00149 dnaA chromosomal repl 99.6 2E-14 4.4E-19 153.5 19.7 196 212-432 116-326 (450)
77 PRK07940 DNA polymerase III su 99.6 1.5E-14 3.4E-19 151.0 18.1 187 216-430 3-216 (394)
78 PRK14964 DNA polymerase III su 99.6 1.6E-14 3.4E-19 154.0 17.7 188 210-432 5-221 (491)
79 TIGR03345 VI_ClpV1 type VI sec 99.6 9.7E-15 2.1E-19 166.0 17.2 193 205-420 174-389 (852)
80 TIGR02928 orc1/cdc6 family rep 99.6 7.9E-14 1.7E-18 144.7 22.5 171 212-400 9-213 (365)
81 PRK10865 protein disaggregatio 99.6 1.4E-14 3E-19 165.1 17.8 177 204-403 164-358 (857)
82 KOG2028 ATPase related to the 99.6 3.3E-14 7.2E-19 141.9 18.0 152 212-398 132-293 (554)
83 PRK06893 DNA replication initi 99.6 3.8E-14 8.2E-19 138.1 18.3 177 212-419 10-195 (229)
84 PRK06645 DNA polymerase III su 99.6 3.6E-14 7.8E-19 152.2 19.7 188 210-432 13-233 (507)
85 PRK08691 DNA polymerase III su 99.6 2.2E-14 4.8E-19 156.6 18.3 187 210-431 8-223 (709)
86 PHA02544 44 clamp loader, smal 99.6 2.9E-14 6.4E-19 145.1 17.9 160 210-399 13-173 (316)
87 TIGR03420 DnaA_homol_Hda DnaA 99.6 2.2E-14 4.7E-19 138.8 15.9 205 214-471 11-225 (226)
88 PRK14963 DNA polymerase III su 99.6 3.9E-14 8.5E-19 152.4 18.9 177 209-419 5-209 (504)
89 PRK05342 clpX ATP-dependent pr 99.6 3E-14 6.5E-19 149.5 17.3 177 220-396 73-322 (412)
90 PRK08903 DnaA regulatory inact 99.6 3.6E-14 7.8E-19 137.8 16.6 204 212-472 12-224 (227)
91 PRK14951 DNA polymerase III su 99.6 3.4E-14 7.4E-19 155.2 17.6 185 210-429 8-226 (618)
92 PRK08084 DNA replication initi 99.6 1.4E-13 3E-18 134.7 20.1 185 212-430 16-211 (235)
93 PRK07764 DNA polymerase III su 99.6 5.4E-14 1.2E-18 158.5 19.5 186 210-430 7-223 (824)
94 PRK14969 DNA polymerase III su 99.6 3.1E-14 6.7E-19 154.3 16.9 188 210-432 8-224 (527)
95 KOG2004 Mitochondrial ATP-depe 99.6 2.4E-14 5.2E-19 153.1 15.1 165 218-399 411-596 (906)
96 PRK05563 DNA polymerase III su 99.6 1E-13 2.2E-18 151.3 20.5 187 209-430 7-222 (559)
97 PRK14952 DNA polymerase III su 99.6 2E-13 4.4E-18 148.6 22.6 187 210-431 5-222 (584)
98 PRK14957 DNA polymerase III su 99.6 7.6E-14 1.7E-18 150.6 19.1 175 210-418 8-211 (546)
99 COG3283 TyrR Transcriptional r 99.6 5.6E-16 1.2E-20 154.1 2.2 360 68-497 75-474 (511)
100 PRK13341 recombination factor 99.6 6.3E-14 1.4E-18 156.2 18.5 152 211-400 21-182 (725)
101 TIGR03346 chaperone_ClpB ATP-d 99.6 4.1E-14 8.9E-19 161.7 17.4 178 204-404 159-354 (852)
102 CHL00095 clpC Clp protease ATP 99.6 1.9E-14 4.2E-19 163.9 14.3 195 204-421 165-381 (821)
103 TIGR02397 dnaX_nterm DNA polym 99.6 7.2E-14 1.5E-18 144.4 17.1 175 211-419 7-210 (355)
104 PRK14088 dnaA chromosomal repl 99.6 8E-14 1.7E-18 148.2 17.7 196 212-432 99-309 (440)
105 PF05673 DUF815: Protein of un 99.6 1.4E-13 3E-18 132.9 17.6 191 212-431 21-244 (249)
106 COG0466 Lon ATP-dependent Lon 99.6 6.8E-14 1.5E-18 150.4 17.0 164 219-399 324-508 (782)
107 PF00308 Bac_DnaA: Bacterial d 99.6 1.1E-13 2.3E-18 134.0 16.5 195 212-431 2-211 (219)
108 PRK14959 DNA polymerase III su 99.6 1.2E-13 2.5E-18 150.2 18.4 176 210-419 8-212 (624)
109 PRK05896 DNA polymerase III su 99.5 1.1E-13 2.5E-18 149.6 17.7 177 209-419 7-212 (605)
110 PRK07133 DNA polymerase III su 99.5 1.3E-13 2.8E-18 151.9 18.3 193 209-430 9-221 (725)
111 TIGR00390 hslU ATP-dependent p 99.5 3.4E-14 7.4E-19 147.0 12.9 248 219-474 13-430 (441)
112 PRK00411 cdc6 cell division co 99.5 5.6E-13 1.2E-17 139.8 21.8 227 213-477 25-285 (394)
113 KOG0989 Replication factor C, 99.5 4.3E-13 9.3E-18 131.8 19.1 178 210-419 28-222 (346)
114 TIGR02974 phageshock_pspF psp 99.5 1.3E-14 2.8E-19 148.6 8.9 198 220-451 1-233 (329)
115 PRK14965 DNA polymerase III su 99.5 1.4E-13 3.1E-18 150.8 17.3 176 210-419 8-212 (576)
116 PRK12422 chromosomal replicati 99.5 3.8E-13 8.2E-18 142.9 19.9 201 212-432 105-317 (445)
117 PRK14086 dnaA chromosomal repl 99.5 5.4E-13 1.2E-17 144.5 21.2 196 212-432 282-492 (617)
118 PRK06647 DNA polymerase III su 99.5 2.1E-13 4.5E-18 148.5 18.0 186 210-430 8-222 (563)
119 PRK10787 DNA-binding ATP-depen 99.5 3.6E-13 7.7E-18 151.8 19.8 227 219-474 323-582 (784)
120 PRK05201 hslU ATP-dependent pr 99.5 4.2E-14 9.1E-19 146.4 11.2 244 219-474 16-432 (443)
121 TIGR02903 spore_lon_C ATP-depe 99.5 1.1E-12 2.4E-17 144.7 23.2 172 206-403 142-370 (615)
122 PRK14953 DNA polymerase III su 99.5 2.9E-13 6.2E-18 145.2 18.0 176 210-419 8-212 (486)
123 TIGR00382 clpX endopeptidase C 99.5 2.9E-13 6.3E-18 141.6 17.2 179 219-397 78-329 (413)
124 TIGR02329 propionate_PrpR prop 99.5 3.1E-14 6.8E-19 153.7 10.2 218 214-471 208-467 (526)
125 PRK15424 propionate catabolism 99.5 1.3E-14 2.8E-19 156.6 7.0 207 215-451 216-465 (538)
126 PRK09111 DNA polymerase III su 99.5 4.2E-13 9E-18 146.9 18.4 192 210-430 16-235 (598)
127 PRK08451 DNA polymerase III su 99.5 4.6E-13 1E-17 144.0 18.3 189 210-433 6-223 (535)
128 PRK11608 pspF phage shock prot 99.5 2.5E-13 5.4E-18 139.1 15.5 202 216-451 4-240 (326)
129 PRK06305 DNA polymerase III su 99.5 8.3E-13 1.8E-17 140.7 19.4 175 211-419 10-214 (451)
130 PRK14970 DNA polymerase III su 99.5 7.2E-13 1.6E-17 138.0 18.3 179 211-418 10-200 (367)
131 PRK11388 DNA-binding transcrip 99.5 9E-14 1.9E-18 154.8 11.2 220 213-472 320-569 (638)
132 PRK14955 DNA polymerase III su 99.5 9.2E-13 2E-17 138.5 18.2 182 210-419 8-220 (397)
133 TIGR01817 nifA Nif-specific re 99.5 2.3E-14 5E-19 156.3 6.4 213 212-468 190-439 (534)
134 PRK11034 clpA ATP-dependent Cl 99.5 6.6E-13 1.4E-17 148.7 18.0 205 219-439 459-718 (758)
135 TIGR02640 gas_vesic_GvpN gas v 99.5 1.2E-12 2.5E-17 130.2 17.8 134 251-399 21-198 (262)
136 PRK00440 rfc replication facto 99.5 1.5E-12 3.2E-17 132.4 18.6 175 210-419 9-195 (319)
137 PRK14087 dnaA chromosomal repl 99.5 9.2E-13 2E-17 140.3 17.5 169 251-434 141-325 (450)
138 PRK05022 anaerobic nitric oxid 99.5 1.8E-13 3.9E-18 148.3 11.9 204 216-453 185-422 (509)
139 COG1474 CDC6 Cdc6-related prot 99.5 2.2E-12 4.8E-17 133.6 19.0 229 213-477 12-268 (366)
140 PRK05642 DNA replication initi 99.5 4.5E-12 9.7E-17 124.0 19.8 156 252-430 46-210 (234)
141 COG1221 PspF Transcriptional r 99.5 3.5E-14 7.5E-19 146.7 5.1 202 213-451 73-309 (403)
142 PRK15429 formate hydrogenlyase 99.5 3E-13 6.5E-18 151.7 12.9 203 214-451 372-609 (686)
143 PRK08727 hypothetical protein; 99.5 4.3E-12 9.3E-17 124.0 19.4 172 212-418 13-195 (233)
144 PRK14954 DNA polymerase III su 99.5 5.4E-12 1.2E-16 138.4 21.9 182 210-419 8-220 (620)
145 PRK14948 DNA polymerase III su 99.4 3.2E-12 6.8E-17 140.8 18.4 175 211-419 9-214 (620)
146 TIGR02639 ClpA ATP-dependent C 99.4 2.7E-12 5.7E-17 144.9 17.8 204 218-439 454-714 (731)
147 PRK14950 DNA polymerase III su 99.4 3.1E-12 6.8E-17 140.7 17.9 186 210-430 8-223 (585)
148 PRK13407 bchI magnesium chelat 99.4 2.1E-12 4.6E-17 132.0 14.9 162 213-399 3-216 (334)
149 cd00009 AAA The AAA+ (ATPases 99.4 4.4E-12 9.4E-17 112.0 14.6 138 222-384 2-150 (151)
150 COG0593 DnaA ATPase involved i 99.4 4.6E-12 1E-16 131.4 16.7 196 211-431 80-289 (408)
151 CHL00081 chlI Mg-protoporyphyr 99.4 7.1E-12 1.5E-16 128.5 17.5 162 212-399 11-232 (350)
152 PRK06620 hypothetical protein; 99.4 8.7E-12 1.9E-16 120.2 16.5 173 212-430 10-191 (214)
153 COG2812 DnaX DNA polymerase II 99.4 2E-12 4.3E-17 137.7 11.6 198 208-434 6-226 (515)
154 PRK14971 DNA polymerase III su 99.4 2.8E-11 6.2E-16 133.3 20.3 184 211-429 10-223 (614)
155 PRK07471 DNA polymerase III su 99.4 6.5E-11 1.4E-15 122.8 21.9 187 212-430 13-240 (365)
156 PF00158 Sigma54_activat: Sigm 99.3 3.3E-12 7.2E-17 118.5 9.7 136 220-383 1-160 (168)
157 COG2607 Predicted ATPase (AAA+ 99.3 4.9E-11 1.1E-15 113.7 17.3 191 212-431 54-276 (287)
158 PRK05564 DNA polymerase III su 99.3 4.4E-11 9.6E-16 121.9 18.5 172 216-422 2-185 (313)
159 PRK09112 DNA polymerase III su 99.3 7.8E-11 1.7E-15 121.6 20.0 203 212-444 17-256 (351)
160 COG0542 clpA ATP-binding subun 99.3 1.6E-11 3.5E-16 135.6 15.2 204 218-439 491-757 (786)
161 PHA02244 ATPase-like protein 99.3 9.5E-12 2.1E-16 127.2 12.2 130 250-395 118-269 (383)
162 PRK10923 glnG nitrogen regulat 99.3 1.2E-11 2.7E-16 132.7 13.3 216 216-471 136-385 (469)
163 TIGR03345 VI_ClpV1 type VI sec 99.3 4.2E-11 9.1E-16 136.6 17.9 203 218-439 566-833 (852)
164 TIGR02915 PEP_resp_reg putativ 99.3 2.9E-12 6.2E-17 136.6 7.7 204 216-453 137-374 (445)
165 KOG0991 Replication factor C, 99.3 2.7E-11 5.8E-16 114.9 13.2 157 208-396 17-183 (333)
166 TIGR03346 chaperone_ClpB ATP-d 99.3 6.7E-11 1.4E-15 135.5 19.0 205 217-439 564-828 (852)
167 PRK13531 regulatory ATPase Rav 99.3 2.1E-10 4.4E-15 121.3 21.0 153 219-398 21-193 (498)
168 TIGR02030 BchI-ChlI magnesium 99.3 8.1E-11 1.8E-15 120.6 17.5 156 216-399 2-219 (337)
169 PRK10865 protein disaggregatio 99.3 1.6E-10 3.6E-15 132.0 21.2 207 217-439 567-831 (857)
170 TIGR01650 PD_CobS cobaltochela 99.3 2.3E-11 5E-16 123.1 12.6 136 251-400 64-234 (327)
171 COG0542 clpA ATP-binding subun 99.3 4.2E-11 9E-16 132.3 15.6 183 203-407 155-354 (786)
172 TIGR02442 Cob-chelat-sub cobal 99.3 7.2E-11 1.6E-15 131.0 17.3 156 216-399 2-214 (633)
173 CHL00095 clpC Clp protease ATP 99.3 6E-11 1.3E-15 135.5 16.6 204 218-439 509-784 (821)
174 PRK15115 response regulator Gl 99.3 1E-11 2.3E-16 132.3 9.8 213 219-471 135-381 (444)
175 PRK09087 hypothetical protein; 99.3 6.9E-11 1.5E-15 115.0 14.6 136 252-418 45-186 (226)
176 COG0470 HolB ATPase involved i 99.2 1.4E-10 3.1E-15 117.9 15.8 150 218-396 1-178 (325)
177 PRK11361 acetoacetate metaboli 99.2 7.7E-11 1.7E-15 126.0 14.3 216 216-471 141-390 (457)
178 TIGR01818 ntrC nitrogen regula 99.2 3E-11 6.5E-16 129.4 10.5 218 217-471 133-381 (463)
179 COG0714 MoxR-like ATPases [Gen 99.2 1.1E-10 2.5E-15 119.8 12.8 154 219-399 25-203 (329)
180 PF01078 Mg_chelatase: Magnesi 99.2 1.3E-11 2.8E-16 117.0 4.9 45 217-275 2-46 (206)
181 PRK07399 DNA polymerase III su 99.2 4.1E-10 8.8E-15 114.7 15.9 180 216-426 2-220 (314)
182 PF07728 AAA_5: AAA domain (dy 99.2 6.3E-11 1.4E-15 106.0 8.5 110 253-377 1-139 (139)
183 PRK08058 DNA polymerase III su 99.2 7.5E-10 1.6E-14 113.7 17.3 149 216-397 3-180 (329)
184 TIGR00678 holB DNA polymerase 99.2 5.8E-10 1.3E-14 105.2 15.1 127 250-398 13-167 (188)
185 COG1224 TIP49 DNA helicase TIP 99.2 1.2E-09 2.5E-14 109.7 17.4 131 311-477 292-435 (450)
186 PRK05707 DNA polymerase III su 99.2 9.6E-10 2.1E-14 112.6 17.0 131 249-399 20-178 (328)
187 TIGR00368 Mg chelatase-related 99.2 8.2E-10 1.8E-14 118.8 17.1 145 215-389 189-394 (499)
188 KOG1969 DNA replication checkp 99.1 1.5E-09 3.1E-14 117.3 18.0 202 211-437 264-516 (877)
189 smart00382 AAA ATPases associa 99.1 3E-10 6.4E-15 99.1 10.7 128 251-386 2-147 (148)
190 TIGR00764 lon_rel lon-related 99.1 1.3E-09 2.9E-14 120.1 17.9 54 211-278 11-64 (608)
191 PRK10365 transcriptional regul 99.1 7.6E-11 1.6E-15 125.4 7.1 213 219-471 140-386 (441)
192 PRK11331 5-methylcytosine-spec 99.1 1.4E-09 3.1E-14 114.1 15.0 142 217-385 174-357 (459)
193 PRK04132 replication factor C 99.1 2.7E-09 5.7E-14 120.3 18.0 148 250-420 563-724 (846)
194 PF07724 AAA_2: AAA domain (Cd 99.1 3.4E-10 7.4E-15 105.4 8.9 113 250-366 2-130 (171)
195 COG1220 HslU ATP-dependent pro 99.1 2.6E-09 5.7E-14 106.5 15.3 156 311-474 251-433 (444)
196 smart00350 MCM minichromosome 99.1 1.3E-09 2.8E-14 118.3 14.3 167 218-400 203-401 (509)
197 KOG0741 AAA+-type ATPase [Post 99.1 6.1E-10 1.3E-14 116.2 10.9 146 249-397 536-684 (744)
198 TIGR03015 pepcterm_ATPase puta 99.1 1E-08 2.2E-13 101.7 19.0 191 252-475 44-267 (269)
199 TIGR02031 BchD-ChlD magnesium 99.0 6.4E-09 1.4E-13 114.5 18.3 136 251-399 16-174 (589)
200 COG3284 AcoR Transcriptional a 99.0 4.9E-11 1.1E-15 127.6 0.2 209 249-479 334-582 (606)
201 PRK06871 DNA polymerase III su 99.0 3E-08 6.5E-13 101.2 19.5 144 223-398 7-178 (325)
202 PRK12377 putative replication 99.0 2.7E-09 5.8E-14 105.0 11.5 141 212-377 68-222 (248)
203 TIGR00602 rad24 checkpoint pro 99.0 1E-08 2.2E-13 112.8 17.0 172 209-402 75-290 (637)
204 PRK07993 DNA polymerase III su 99.0 3.5E-08 7.7E-13 101.4 19.7 154 249-426 22-203 (334)
205 PF06068 TIP49: TIP49 C-termin 99.0 1.5E-08 3.3E-13 103.1 16.7 68 213-287 19-88 (398)
206 COG1219 ClpX ATP-dependent pro 99.0 9.2E-10 2E-14 108.9 7.6 132 219-350 62-203 (408)
207 PF13177 DNA_pol3_delta2: DNA 99.0 6.1E-09 1.3E-13 96.1 12.5 133 222-385 1-160 (162)
208 PRK08116 hypothetical protein; 99.0 4.7E-09 1E-13 104.7 11.9 131 250-397 113-258 (268)
209 PRK09862 putative ATP-dependen 98.9 1.8E-08 3.8E-13 108.3 16.3 145 215-389 188-391 (506)
210 COG1239 ChlI Mg-chelatase subu 98.9 1.3E-08 2.7E-13 105.0 14.2 162 214-401 13-234 (423)
211 KOG1514 Origin recognition com 98.9 3.2E-08 7E-13 106.8 17.7 228 219-479 397-660 (767)
212 COG0606 Predicted ATPase with 98.9 2.4E-09 5.2E-14 111.7 8.6 48 214-275 175-222 (490)
213 PF07726 AAA_3: ATPase family 98.9 6.5E-10 1.4E-14 97.4 3.7 110 253-378 1-130 (131)
214 PF14532 Sigma54_activ_2: Sigm 98.9 1.4E-09 3E-14 97.5 5.8 126 221-386 1-136 (138)
215 PRK08769 DNA polymerase III su 98.9 3.9E-08 8.4E-13 100.2 16.6 170 223-425 9-206 (319)
216 PRK08181 transposase; Validate 98.9 4.5E-09 9.8E-14 104.6 9.5 128 251-394 106-250 (269)
217 PTZ00111 DNA replication licen 98.9 3.2E-08 7E-13 111.3 17.3 165 218-399 450-657 (915)
218 PRK06090 DNA polymerase III su 98.9 1.1E-07 2.3E-12 96.9 19.3 144 223-397 8-178 (319)
219 KOG2227 Pre-initiation complex 98.9 1.7E-07 3.6E-12 97.4 20.5 239 217-479 149-420 (529)
220 PF05621 TniB: Bacterial TniB 98.9 4.2E-08 9.2E-13 97.9 15.2 201 219-438 35-271 (302)
221 PRK06964 DNA polymerase III su 98.9 1.7E-08 3.6E-13 103.7 12.7 133 249-398 19-203 (342)
222 PRK07952 DNA replication prote 98.9 2.6E-08 5.6E-13 97.8 13.4 141 212-377 66-221 (244)
223 smart00763 AAA_PrkA PrkA AAA d 98.9 7.5E-08 1.6E-12 98.8 17.0 62 217-284 49-118 (361)
224 KOG0745 Putative ATP-dependent 98.8 1.1E-08 2.3E-13 105.0 9.5 99 252-350 227-332 (564)
225 KOG0990 Replication factor C, 98.8 3.9E-08 8.4E-13 97.7 12.4 166 208-405 31-209 (360)
226 PRK06835 DNA replication prote 98.8 2.1E-08 4.5E-13 102.7 10.9 113 251-378 183-306 (329)
227 KOG2035 Replication factor C, 98.8 5.3E-07 1.2E-11 88.1 17.6 174 212-419 7-220 (351)
228 KOG1942 DNA helicase, TBP-inte 98.7 3.4E-07 7.3E-12 90.0 14.9 89 310-416 296-398 (456)
229 PRK13765 ATP-dependent proteas 98.7 2.7E-07 5.8E-12 102.0 15.0 52 211-276 24-75 (637)
230 PRK08699 DNA polymerase III su 98.7 1.5E-07 3.2E-12 96.5 12.0 132 249-397 19-183 (325)
231 KOG1051 Chaperone HSP104 and r 98.7 1.5E-07 3.2E-12 105.9 12.7 128 219-365 563-710 (898)
232 PRK06526 transposase; Provisio 98.7 2.7E-08 5.9E-13 98.4 6.0 74 249-324 96-173 (254)
233 PF01695 IstB_IS21: IstB-like 98.7 1.8E-08 3.9E-13 94.4 4.1 72 249-322 45-120 (178)
234 COG1484 DnaC DNA replication p 98.6 2.2E-07 4.7E-12 92.0 10.4 72 250-323 104-180 (254)
235 PRK09183 transposase/IS protei 98.6 9.4E-08 2E-12 94.9 7.8 75 249-324 100-178 (259)
236 PRK06921 hypothetical protein; 98.6 1.9E-07 4.2E-12 93.0 9.4 68 251-321 117-188 (266)
237 PF01637 Arch_ATPase: Archaeal 98.6 2.1E-07 4.6E-12 89.3 9.1 180 221-421 2-228 (234)
238 PF03215 Rad17: Rad17 cell cyc 98.6 1.6E-06 3.5E-11 93.8 16.5 207 209-437 10-269 (519)
239 PF13173 AAA_14: AAA domain 98.6 4E-07 8.7E-12 80.4 9.6 69 252-322 3-73 (128)
240 PRK08939 primosomal protein Dn 98.5 3.3E-07 7.1E-12 93.1 9.0 71 250-322 155-229 (306)
241 PF13401 AAA_22: AAA domain; P 98.5 9.7E-07 2.1E-11 77.5 9.8 73 251-323 4-100 (131)
242 PRK13406 bchD magnesium chelat 98.5 9.4E-07 2E-11 96.9 11.7 123 252-390 26-173 (584)
243 KOG0478 DNA replication licens 98.4 2.9E-06 6.2E-11 91.7 13.3 172 219-398 430-625 (804)
244 KOG2680 DNA helicase TIP49, TB 98.4 2.7E-05 5.8E-10 77.1 18.6 131 311-477 289-432 (454)
245 PF12775 AAA_7: P-loop contain 98.4 3.7E-07 8.1E-12 91.2 5.1 137 250-400 32-194 (272)
246 PF05729 NACHT: NACHT domain 98.4 5.8E-06 1.3E-10 75.1 12.3 140 253-401 2-165 (166)
247 PRK07276 DNA polymerase III su 98.4 2.5E-05 5.4E-10 78.6 17.8 170 223-430 7-199 (290)
248 PRK05917 DNA polymerase III su 98.3 5.9E-06 1.3E-10 82.9 13.0 118 249-386 17-154 (290)
249 COG1241 MCM2 Predicted ATPase 98.3 2.7E-06 5.8E-11 93.8 11.0 169 217-402 285-486 (682)
250 COG4650 RtcR Sigma54-dependent 98.3 9.4E-07 2E-11 86.9 6.6 77 250-326 207-298 (531)
251 PRK07132 DNA polymerase III su 98.3 7.8E-05 1.7E-09 75.5 20.4 125 251-397 18-160 (299)
252 KOG0480 DNA replication licens 98.3 8E-07 1.7E-11 95.2 5.7 175 215-403 342-546 (764)
253 PF12774 AAA_6: Hydrolytic ATP 98.2 1.7E-05 3.7E-10 77.4 13.4 131 252-396 33-177 (231)
254 KOG0477 DNA replication licens 98.2 7.1E-06 1.5E-10 87.8 10.5 175 219-404 450-655 (854)
255 KOG0482 DNA replication licens 98.2 7.2E-06 1.6E-10 85.9 10.2 210 218-436 342-589 (721)
256 PRK05818 DNA polymerase III su 98.2 1.5E-05 3.3E-10 78.5 12.0 121 249-386 5-147 (261)
257 KOG2228 Origin recognition com 98.2 1.6E-05 3.5E-10 79.8 11.7 163 217-399 23-219 (408)
258 PF00931 NB-ARC: NB-ARC domain 98.1 3.4E-05 7.3E-10 77.1 13.7 159 249-428 17-202 (287)
259 cd01120 RecA-like_NTPases RecA 98.1 2E-05 4.4E-10 71.0 10.5 72 254-325 2-100 (165)
260 PLN03210 Resistant to P. syrin 98.1 0.0001 2.2E-09 88.0 18.8 176 212-421 178-389 (1153)
261 COG1618 Predicted nucleotide k 98.1 3.8E-05 8.2E-10 69.8 11.6 25 251-275 5-29 (179)
262 PF00493 MCM: MCM2/3/5 family 98.1 6.4E-07 1.4E-11 92.1 0.2 168 218-402 24-224 (331)
263 KOG0481 DNA replication licens 98.1 6.2E-05 1.3E-09 79.1 13.5 186 196-390 309-518 (729)
264 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00019 4.2E-09 76.4 16.4 67 212-283 76-142 (634)
265 PF03969 AFG1_ATPase: AFG1-lik 98.0 2E-05 4.3E-10 81.9 8.6 103 248-366 59-168 (362)
266 TIGR02237 recomb_radB DNA repa 98.0 3.9E-05 8.5E-10 73.3 10.0 80 245-324 6-111 (209)
267 PHA00729 NTP-binding motif con 98.0 2.8E-05 6E-10 75.2 8.9 25 252-276 18-42 (226)
268 TIGR01618 phage_P_loop phage n 97.9 1.3E-05 2.8E-10 77.5 6.0 111 251-363 12-142 (220)
269 PF00910 RNA_helicase: RNA hel 97.9 1.2E-05 2.5E-10 68.9 3.8 23 254-276 1-23 (107)
270 COG3267 ExeA Type II secretory 97.8 0.00077 1.7E-08 65.8 15.9 169 253-437 53-254 (269)
271 cd01124 KaiC KaiC is a circadi 97.8 0.00017 3.6E-09 67.3 11.0 71 254-324 2-109 (187)
272 COG5271 MDN1 AAA ATPase contai 97.8 0.00015 3.3E-09 84.6 11.8 135 251-401 1543-1705(4600)
273 PRK14722 flhF flagellar biosyn 97.8 0.00016 3.4E-09 75.3 11.0 112 248-373 134-266 (374)
274 KOG1968 Replication factor C, 97.7 6.8E-05 1.5E-09 85.3 8.2 201 214-433 316-533 (871)
275 PF13207 AAA_17: AAA domain; P 97.7 3.4E-05 7.4E-10 66.8 4.4 31 254-284 2-32 (121)
276 PRK09361 radB DNA repair and r 97.7 0.00024 5.1E-09 68.8 10.5 40 246-285 18-60 (225)
277 PF09336 Vps4_C: Vps4 C termin 97.7 2.6E-05 5.6E-10 60.0 2.8 33 461-493 29-62 (62)
278 PF14516 AAA_35: AAA-like doma 97.7 0.0042 9E-08 64.0 19.6 172 249-432 29-243 (331)
279 PRK11823 DNA repair protein Ra 97.7 0.00041 8.9E-09 74.3 12.4 80 246-325 75-171 (446)
280 PRK12723 flagellar biosynthesi 97.7 0.00059 1.3E-08 71.5 13.2 109 251-372 174-305 (388)
281 PHA02624 large T antigen; Prov 97.7 0.00018 4E-09 78.1 9.5 124 247-385 427-561 (647)
282 PRK08533 flagellar accessory p 97.6 0.00044 9.5E-09 67.5 11.3 77 247-323 20-130 (230)
283 cd01121 Sms Sms (bacterial rad 97.6 0.00046 1E-08 72.1 12.0 79 247-325 78-173 (372)
284 KOG1051 Chaperone HSP104 and r 97.6 0.00036 7.8E-09 79.2 11.8 163 216-401 184-365 (898)
285 PRK08118 topology modulation p 97.6 0.00016 3.5E-09 67.0 7.2 33 252-284 2-34 (167)
286 cd01394 radB RadB. The archaea 97.6 0.00051 1.1E-08 66.1 10.5 40 246-285 14-56 (218)
287 PRK07261 topology modulation p 97.6 0.0002 4.4E-09 66.5 7.3 34 253-286 2-35 (171)
288 PRK15455 PrkA family serine pr 97.6 0.00013 2.7E-09 79.1 6.6 64 215-284 73-137 (644)
289 PF05707 Zot: Zonular occluden 97.6 0.00021 4.6E-09 67.7 7.4 123 254-386 3-146 (193)
290 TIGR02012 tigrfam_recA protein 97.5 0.00053 1.1E-08 70.0 10.4 80 246-325 50-148 (321)
291 PRK00131 aroK shikimate kinase 97.5 9.9E-05 2.1E-09 67.8 4.7 33 250-282 3-35 (175)
292 PRK04296 thymidine kinase; Pro 97.5 0.0011 2.4E-08 62.6 11.8 33 252-284 3-38 (190)
293 COG5271 MDN1 AAA ATPase contai 97.5 0.00045 9.7E-09 80.9 10.3 136 251-401 888-1049(4600)
294 PF01745 IPT: Isopentenyl tran 97.5 0.00022 4.8E-09 67.9 6.7 134 253-402 3-142 (233)
295 COG1373 Predicted ATPase (AAA+ 97.5 0.0031 6.7E-08 66.6 16.1 120 253-393 39-161 (398)
296 PRK06067 flagellar accessory p 97.5 0.001 2.2E-08 64.9 11.5 78 246-323 20-133 (234)
297 cd00983 recA RecA is a bacter 97.5 0.00076 1.7E-08 68.9 10.9 80 246-325 50-148 (325)
298 KOG2170 ATPase of the AAA+ sup 97.5 0.00056 1.2E-08 68.1 9.4 99 219-325 83-193 (344)
299 PF03266 NTPase_1: NTPase; In 97.5 0.00015 3.3E-09 67.3 5.1 23 253-275 1-23 (168)
300 COG1485 Predicted ATPase [Gene 97.5 0.0013 2.8E-08 67.0 12.0 102 248-366 62-171 (367)
301 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0018 3.9E-08 63.4 12.7 41 245-285 15-58 (237)
302 KOG2543 Origin recognition com 97.4 0.0021 4.5E-08 66.1 13.1 157 219-399 7-193 (438)
303 PF06309 Torsin: Torsin; Inte 97.4 0.00025 5.4E-09 62.3 5.8 52 219-275 26-77 (127)
304 cd01393 recA_like RecA is a b 97.4 0.0011 2.5E-08 63.9 10.9 41 246-286 14-63 (226)
305 PHA02774 E1; Provisional 97.4 0.00064 1.4E-08 73.7 9.9 36 249-284 432-468 (613)
306 PF13191 AAA_16: AAA ATPase do 97.4 0.00016 3.5E-09 66.9 4.5 59 220-287 2-63 (185)
307 PF13671 AAA_33: AAA domain; P 97.4 0.00037 8.1E-09 61.9 6.6 33 254-288 2-34 (143)
308 PRK14974 cell division protein 97.4 0.002 4.4E-08 66.3 12.8 35 250-284 139-176 (336)
309 COG3854 SpoIIIAA ncharacterize 97.4 0.00055 1.2E-08 65.8 7.8 74 249-322 135-230 (308)
310 PRK00771 signal recognition pa 97.4 0.0062 1.4E-07 64.9 16.5 37 249-285 93-132 (437)
311 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.0012 2.5E-08 64.2 10.2 41 246-286 14-63 (235)
312 PF06745 KaiC: KaiC; InterPro 97.3 0.0021 4.4E-08 62.3 11.6 77 246-322 14-127 (226)
313 cd03283 ABC_MutS-like MutS-lik 97.3 0.0025 5.4E-08 60.8 11.8 24 251-274 25-48 (199)
314 TIGR02858 spore_III_AA stage I 97.3 0.00075 1.6E-08 67.4 8.2 68 252-319 112-203 (270)
315 PRK10536 hypothetical protein; 97.3 0.0025 5.5E-08 62.9 11.7 46 215-274 52-97 (262)
316 PRK13947 shikimate kinase; Pro 97.3 0.00025 5.4E-09 65.4 4.3 32 252-283 2-33 (171)
317 PF13604 AAA_30: AAA domain; P 97.3 0.0028 6.1E-08 60.2 11.5 34 252-285 19-55 (196)
318 PRK03839 putative kinase; Prov 97.2 0.00028 6E-09 65.9 4.1 31 253-283 2-32 (180)
319 cd01131 PilT Pilus retraction 97.2 0.00077 1.7E-08 64.2 7.0 67 253-319 3-83 (198)
320 PRK06762 hypothetical protein; 97.2 0.0011 2.4E-08 60.9 7.8 37 252-288 3-39 (166)
321 PRK13695 putative NTPase; Prov 97.2 0.003 6.6E-08 58.6 10.7 23 253-275 2-24 (174)
322 cd00046 DEXDc DEAD-like helica 97.2 0.0017 3.7E-08 56.0 8.5 24 252-275 1-24 (144)
323 PRK09354 recA recombinase A; P 97.2 0.0029 6.2E-08 65.3 11.3 79 246-324 55-152 (349)
324 KOG3347 Predicted nucleotide k 97.2 0.00029 6.2E-09 63.3 3.5 32 252-283 8-39 (176)
325 PRK06581 DNA polymerase III su 97.2 0.0055 1.2E-07 59.7 12.3 133 251-400 15-162 (263)
326 cd00464 SK Shikimate kinase (S 97.2 0.00037 8E-09 62.8 4.1 31 253-283 1-31 (154)
327 PRK00625 shikimate kinase; Pro 97.2 0.00038 8.3E-09 64.9 4.2 31 253-283 2-32 (173)
328 COG4619 ABC-type uncharacteriz 97.2 0.002 4.3E-08 59.3 8.6 28 248-275 26-53 (223)
329 PF00448 SRP54: SRP54-type pro 97.2 0.0016 3.4E-08 62.1 8.3 72 251-322 1-95 (196)
330 PRK04328 hypothetical protein; 97.1 0.0064 1.4E-07 60.0 12.9 39 246-284 18-59 (249)
331 cd00544 CobU Adenosylcobinamid 97.1 0.003 6.5E-08 58.7 9.9 72 254-327 2-90 (169)
332 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0015 3.2E-08 65.1 8.3 94 215-321 57-160 (264)
333 PRK05800 cobU adenosylcobinami 97.1 0.0026 5.7E-08 59.1 9.3 34 253-286 3-36 (170)
334 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0056 1.2E-07 59.0 11.8 22 252-273 30-51 (213)
335 PRK14532 adenylate kinase; Pro 97.1 0.00049 1.1E-08 64.6 4.3 35 253-289 2-36 (188)
336 TIGR00416 sms DNA repair prote 97.1 0.0035 7.5E-08 67.3 11.3 78 247-324 90-184 (454)
337 PF00437 T2SE: Type II/IV secr 97.1 0.001 2.2E-08 66.2 6.7 98 213-320 99-207 (270)
338 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00049 1.1E-08 64.2 4.2 34 254-289 2-35 (183)
339 PRK11889 flhF flagellar biosyn 97.1 0.0071 1.5E-07 63.2 12.9 96 224-322 217-332 (436)
340 PRK05703 flhF flagellar biosyn 97.1 0.0061 1.3E-07 64.9 12.7 36 251-286 221-261 (424)
341 TIGR00064 ftsY signal recognit 97.1 0.0092 2E-07 59.8 13.1 37 249-285 70-109 (272)
342 PRK13949 shikimate kinase; Pro 97.1 0.00054 1.2E-08 63.6 4.0 32 252-283 2-33 (169)
343 COG4088 Predicted nucleotide k 97.1 0.0029 6.4E-08 59.9 8.8 24 253-276 3-26 (261)
344 PRK04841 transcriptional regul 97.1 0.019 4E-07 66.8 17.6 151 252-421 33-219 (903)
345 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0066 1.4E-07 60.3 11.8 40 246-285 31-73 (259)
346 PRK06217 hypothetical protein; 97.0 0.00064 1.4E-08 63.7 4.4 31 253-283 3-33 (183)
347 cd00227 CPT Chloramphenicol (C 97.0 0.00055 1.2E-08 63.7 3.8 35 252-286 3-37 (175)
348 KOG2383 Predicted ATPase [Gene 97.0 0.0038 8.3E-08 64.5 10.0 28 248-275 111-138 (467)
349 cd03243 ABC_MutS_homologs The 97.0 0.0082 1.8E-07 57.2 11.8 24 250-273 28-51 (202)
350 cd02020 CMPK Cytidine monophos 97.0 0.00068 1.5E-08 60.4 3.9 30 254-283 2-31 (147)
351 PF10443 RNA12: RNA12 protein; 97.0 0.054 1.2E-06 57.0 18.4 36 367-402 197-232 (431)
352 cd02021 GntK Gluconate kinase 97.0 0.00073 1.6E-08 60.9 4.1 28 254-281 2-29 (150)
353 TIGR03499 FlhF flagellar biosy 97.0 0.0055 1.2E-07 61.7 10.8 63 224-286 167-234 (282)
354 PRK09376 rho transcription ter 97.0 0.0023 4.9E-08 66.8 8.1 77 250-326 168-272 (416)
355 smart00534 MUTSac ATPase domai 97.0 0.0092 2E-07 56.1 11.6 68 254-321 2-89 (185)
356 PRK13948 shikimate kinase; Pro 97.0 0.0009 1.9E-08 63.0 4.7 36 248-283 7-42 (182)
357 COG1102 Cmk Cytidylate kinase 97.0 0.00071 1.5E-08 61.7 3.7 28 254-281 3-30 (179)
358 PRK14531 adenylate kinase; Pro 97.0 0.00085 1.8E-08 63.0 4.5 35 252-288 3-37 (183)
359 cd01428 ADK Adenylate kinase ( 97.0 0.00077 1.7E-08 63.3 4.2 29 254-282 2-30 (194)
360 PRK12724 flagellar biosynthesi 97.0 0.0089 1.9E-07 63.1 12.4 111 251-372 223-352 (432)
361 KOG0479 DNA replication licens 97.0 0.0027 5.9E-08 68.1 8.5 148 218-382 301-480 (818)
362 TIGR02655 circ_KaiC circadian 97.0 0.006 1.3E-07 66.1 11.5 80 245-324 257-367 (484)
363 COG1066 Sms Predicted ATP-depe 96.9 0.0077 1.7E-07 62.6 11.5 101 247-347 89-206 (456)
364 PF04665 Pox_A32: Poxvirus A32 96.9 0.011 2.3E-07 58.0 12.0 133 248-398 10-169 (241)
365 TIGR02688 conserved hypothetic 96.9 0.0015 3.2E-08 68.6 6.4 65 249-325 207-275 (449)
366 PRK04301 radA DNA repair and r 96.9 0.0052 1.1E-07 62.9 10.4 41 246-286 97-146 (317)
367 PRK14530 adenylate kinase; Pro 96.9 0.00098 2.1E-08 64.2 4.7 31 252-282 4-34 (215)
368 cd01128 rho_factor Transcripti 96.9 0.0026 5.7E-08 62.8 7.8 29 249-277 14-42 (249)
369 PRK05973 replicative DNA helic 96.9 0.0069 1.5E-07 59.3 10.6 40 246-285 59-101 (237)
370 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.015 3.2E-07 56.4 12.9 39 246-284 15-56 (229)
371 cd01122 GP4d_helicase GP4d_hel 96.9 0.0098 2.1E-07 59.1 11.9 38 247-284 26-67 (271)
372 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0084 1.8E-07 57.9 11.1 41 246-286 11-54 (224)
373 TIGR01313 therm_gnt_kin carboh 96.9 0.0008 1.7E-08 61.6 3.8 27 254-280 1-27 (163)
374 COG0563 Adk Adenylate kinase a 96.9 0.00098 2.1E-08 62.5 4.3 33 253-287 2-34 (178)
375 TIGR02236 recomb_radA DNA repa 96.9 0.0068 1.5E-07 61.7 10.9 40 247-286 91-139 (310)
376 TIGR01420 pilT_fam pilus retra 96.9 0.0021 4.6E-08 66.5 7.2 70 251-320 122-205 (343)
377 PF13245 AAA_19: Part of AAA d 96.9 0.0017 3.7E-08 52.1 5.0 33 252-284 11-50 (76)
378 TIGR02782 TrbB_P P-type conjug 96.9 0.0015 3.2E-08 66.3 5.8 70 251-320 132-214 (299)
379 TIGR01613 primase_Cterm phage/ 96.9 0.0024 5.2E-08 64.9 7.3 86 223-321 54-139 (304)
380 PRK06547 hypothetical protein; 96.9 0.0012 2.5E-08 61.6 4.4 35 249-283 13-47 (172)
381 COG4178 ABC-type uncharacteriz 96.9 0.0029 6.3E-08 69.2 8.1 28 248-275 416-443 (604)
382 PF13479 AAA_24: AAA domain 96.9 0.0062 1.4E-07 58.6 9.7 67 251-322 3-80 (213)
383 cd01130 VirB11-like_ATPase Typ 96.9 0.0014 3E-08 61.7 5.0 71 249-319 23-109 (186)
384 cd03216 ABC_Carb_Monos_I This 96.9 0.0044 9.6E-08 57.0 8.2 74 248-321 23-111 (163)
385 PRK10416 signal recognition pa 96.8 0.017 3.7E-07 59.2 13.2 35 250-284 113-150 (318)
386 PRK03731 aroL shikimate kinase 96.8 0.0013 2.8E-08 60.7 4.4 32 252-283 3-34 (171)
387 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.013 2.7E-07 55.8 11.3 21 252-272 29-49 (200)
388 COG0703 AroK Shikimate kinase 96.8 0.001 2.2E-08 61.7 3.6 32 252-283 3-34 (172)
389 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0053 1.2E-07 57.5 8.5 73 249-321 23-100 (177)
390 PRK13946 shikimate kinase; Pro 96.8 0.0011 2.4E-08 62.2 3.9 33 251-283 10-42 (184)
391 TIGR02238 recomb_DMC1 meiotic 96.8 0.0097 2.1E-07 60.8 11.0 41 246-286 91-140 (313)
392 PF07693 KAP_NTPase: KAP famil 96.8 0.038 8.2E-07 56.2 15.4 30 249-278 18-47 (325)
393 PRK05057 aroK shikimate kinase 96.8 0.0016 3.5E-08 60.6 4.8 34 251-284 4-37 (172)
394 PRK14528 adenylate kinase; Pro 96.8 0.0013 2.9E-08 61.9 4.3 31 252-282 2-32 (186)
395 PTZ00088 adenylate kinase 1; P 96.8 0.0015 3.3E-08 63.7 4.7 32 252-283 7-38 (229)
396 cd00984 DnaB_C DnaB helicase C 96.8 0.0097 2.1E-07 58.0 10.2 38 247-284 9-50 (242)
397 TIGR02525 plasmid_TraJ plasmid 96.8 0.0026 5.7E-08 66.4 6.5 69 252-320 150-235 (372)
398 cd02027 APSK Adenosine 5'-phos 96.7 0.0047 1E-07 56.0 7.3 34 254-287 2-38 (149)
399 PRK13900 type IV secretion sys 96.7 0.0039 8.5E-08 64.2 7.6 71 250-320 159-245 (332)
400 PF12780 AAA_8: P-loop contain 96.7 0.16 3.4E-06 50.8 18.8 90 219-320 9-99 (268)
401 PLN03187 meiotic recombination 96.7 0.011 2.4E-07 61.1 10.7 41 246-286 121-170 (344)
402 PF13238 AAA_18: AAA domain; P 96.7 0.0012 2.7E-08 57.1 3.3 22 254-275 1-22 (129)
403 cd03115 SRP The signal recogni 96.7 0.023 4.9E-07 52.5 11.9 33 253-285 2-37 (173)
404 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.016 3.5E-07 53.2 10.6 29 253-281 4-35 (159)
405 smart00487 DEXDc DEAD-like hel 96.7 0.013 2.9E-07 53.6 10.3 33 252-284 25-62 (201)
406 PRK06696 uridine kinase; Valid 96.7 0.0044 9.6E-08 60.0 7.3 39 250-288 21-62 (223)
407 TIGR01448 recD_rel helicase, p 96.7 0.0068 1.5E-07 68.8 9.9 71 252-322 339-428 (720)
408 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0017 3.6E-08 60.6 4.2 34 252-287 4-37 (188)
409 PLN02200 adenylate kinase fami 96.7 0.0021 4.5E-08 63.0 5.0 38 250-289 42-79 (234)
410 PRK02496 adk adenylate kinase; 96.7 0.0016 3.5E-08 60.9 3.9 30 253-282 3-32 (184)
411 PRK08154 anaerobic benzoate ca 96.7 0.0028 6E-08 64.7 5.9 37 247-283 129-165 (309)
412 cd03238 ABC_UvrA The excision 96.7 0.0081 1.8E-07 56.2 8.6 27 248-274 18-44 (176)
413 PLN02674 adenylate kinase 96.7 0.0042 9.1E-08 61.1 6.8 36 251-288 31-66 (244)
414 COG2804 PulE Type II secretory 96.7 0.0042 9.2E-08 66.2 7.3 92 214-321 234-338 (500)
415 TIGR01351 adk adenylate kinase 96.7 0.0017 3.6E-08 62.3 3.9 29 254-282 2-30 (210)
416 COG2874 FlaH Predicted ATPases 96.6 0.02 4.4E-07 54.7 11.0 119 247-377 24-178 (235)
417 PRK13764 ATPase; Provisional 96.6 0.004 8.6E-08 68.7 7.2 70 251-321 257-335 (602)
418 PRK04040 adenylate kinase; Pro 96.6 0.0023 4.9E-08 60.6 4.6 30 251-280 2-33 (188)
419 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0041 8.9E-08 61.2 6.7 34 254-287 2-38 (249)
420 PRK00279 adk adenylate kinase; 96.6 0.0019 4.2E-08 62.1 4.1 30 253-282 2-31 (215)
421 COG1936 Predicted nucleotide k 96.6 0.0015 3.3E-08 60.2 3.1 30 253-283 2-31 (180)
422 KOG0058 Peptide exporter, ABC 96.6 0.0088 1.9E-07 66.1 9.5 28 248-275 491-518 (716)
423 COG0324 MiaA tRNA delta(2)-iso 96.6 0.0024 5.2E-08 64.6 4.8 38 251-288 3-40 (308)
424 TIGR01425 SRP54_euk signal rec 96.6 0.071 1.5E-06 56.6 16.0 73 250-322 99-194 (429)
425 PF08433 KTI12: Chromatin asso 96.6 0.0077 1.7E-07 60.2 8.3 68 254-322 4-82 (270)
426 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.011 2.4E-07 53.7 8.8 74 248-321 22-109 (157)
427 TIGR02788 VirB11 P-type DNA tr 96.6 0.0087 1.9E-07 61.0 8.9 73 248-320 141-228 (308)
428 PF08303 tRNA_lig_kinase: tRNA 96.6 0.057 1.2E-06 49.6 13.1 133 257-403 5-147 (168)
429 PF13086 AAA_11: AAA domain; P 96.6 0.0028 6.1E-08 60.5 5.0 23 253-275 19-41 (236)
430 PRK12726 flagellar biosynthesi 96.6 0.022 4.8E-07 59.3 11.7 61 223-285 180-243 (407)
431 TIGR02533 type_II_gspE general 96.6 0.0073 1.6E-07 65.4 8.6 95 214-321 218-322 (486)
432 PRK09519 recA DNA recombinatio 96.6 0.016 3.5E-07 65.6 11.4 79 246-324 55-152 (790)
433 cd02019 NK Nucleoside/nucleoti 96.6 0.0038 8.2E-08 48.9 4.7 22 254-275 2-23 (69)
434 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.026 5.7E-07 54.0 11.4 23 251-273 29-51 (204)
435 PRK14527 adenylate kinase; Pro 96.6 0.002 4.3E-08 60.8 3.6 32 250-281 5-36 (191)
436 TIGR00767 rho transcription te 96.5 0.0089 1.9E-07 62.6 8.6 29 248-276 165-193 (415)
437 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0077 1.7E-07 57.2 7.6 42 249-290 13-55 (199)
438 PF09848 DUF2075: Uncharacteri 96.5 0.0034 7.5E-08 65.1 5.6 23 253-275 3-25 (352)
439 PTZ00035 Rad51 protein; Provis 96.5 0.017 3.7E-07 59.7 10.6 41 246-286 113-162 (337)
440 PRK12727 flagellar biosynthesi 96.5 0.038 8.3E-07 59.9 13.6 28 248-275 347-374 (559)
441 PRK10867 signal recognition pa 96.5 0.099 2.1E-06 55.8 16.6 74 249-322 98-195 (433)
442 COG5245 DYN1 Dynein, heavy cha 96.5 0.0052 1.1E-07 72.0 7.1 148 248-402 1491-1661(3164)
443 PHA02530 pseT polynucleotide k 96.5 0.0069 1.5E-07 61.1 7.5 34 252-287 3-37 (300)
444 cd03287 ABC_MSH3_euk MutS3 hom 96.5 0.028 6E-07 54.6 11.4 25 249-273 29-53 (222)
445 PF08423 Rad51: Rad51; InterP 96.5 0.013 2.7E-07 58.3 9.2 114 248-362 35-184 (256)
446 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0081 1.8E-07 54.1 7.2 72 248-321 23-99 (144)
447 cd03228 ABCC_MRP_Like The MRP 96.5 0.006 1.3E-07 56.4 6.5 28 248-275 25-52 (171)
448 TIGR02239 recomb_RAD51 DNA rep 96.5 0.014 3.1E-07 59.6 9.8 41 246-286 91-140 (316)
449 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0036 7.9E-08 64.3 5.4 36 252-287 163-198 (325)
450 TIGR02655 circ_KaiC circadian 96.5 0.02 4.2E-07 62.2 11.3 41 245-285 15-59 (484)
451 COG1116 TauB ABC-type nitrate/ 96.5 0.015 3.3E-07 56.8 9.3 28 248-275 26-53 (248)
452 PF00406 ADK: Adenylate kinase 96.5 0.0022 4.7E-08 58.1 3.3 33 256-290 1-33 (151)
453 PRK13808 adenylate kinase; Pro 96.5 0.017 3.8E-07 59.2 10.2 34 253-288 2-35 (333)
454 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0031 6.6E-08 56.2 4.1 31 248-278 19-49 (133)
455 PRK13833 conjugal transfer pro 96.5 0.0044 9.5E-08 63.5 5.7 69 251-319 144-224 (323)
456 PRK10436 hypothetical protein; 96.5 0.0079 1.7E-07 64.6 7.9 94 214-320 194-297 (462)
457 PF13481 AAA_25: AAA domain; P 96.5 0.019 4.2E-07 53.7 9.7 78 248-325 29-156 (193)
458 PRK10263 DNA translocase FtsK; 96.5 0.039 8.5E-07 65.0 13.8 75 312-397 1142-1218(1355)
459 PRK04182 cytidylate kinase; Pr 96.4 0.003 6.5E-08 58.3 4.0 29 253-281 2-30 (180)
460 PLN03186 DNA repair protein RA 96.4 0.017 3.8E-07 59.6 10.0 40 247-286 119-167 (342)
461 PRK01184 hypothetical protein; 96.4 0.0031 6.6E-08 59.0 3.9 29 253-282 3-31 (184)
462 TIGR02173 cyt_kin_arch cytidyl 96.4 0.0032 7E-08 57.7 4.0 29 254-282 3-31 (171)
463 PRK13851 type IV secretion sys 96.4 0.0033 7.2E-08 65.0 4.5 72 249-320 160-246 (344)
464 PRK08099 bifunctional DNA-bind 96.4 0.0058 1.3E-07 64.5 6.4 30 252-281 220-249 (399)
465 PF13521 AAA_28: AAA domain; P 96.4 0.0028 6.1E-08 58.0 3.6 26 254-280 2-27 (163)
466 PF01583 APS_kinase: Adenylyls 96.4 0.0044 9.5E-08 56.7 4.7 38 252-289 3-43 (156)
467 PRK09302 circadian clock prote 96.4 0.025 5.5E-07 61.7 11.5 113 242-361 22-174 (509)
468 PRK13894 conjugal transfer ATP 96.4 0.0053 1.2E-07 62.9 5.8 71 250-320 147-229 (319)
469 COG2805 PilT Tfp pilus assembl 96.4 0.0056 1.2E-07 61.2 5.6 70 252-321 126-209 (353)
470 cd03247 ABCC_cytochrome_bd The 96.4 0.029 6.3E-07 52.2 10.2 28 248-275 25-52 (178)
471 cd03227 ABC_Class2 ABC-type Cl 96.3 0.032 7E-07 51.2 10.3 24 252-275 22-45 (162)
472 TIGR00174 miaA tRNA isopenteny 96.3 0.0039 8.5E-08 62.7 4.5 34 254-287 2-35 (287)
473 PLN02840 tRNA dimethylallyltra 96.3 0.0037 8.1E-08 65.9 4.4 36 252-287 22-57 (421)
474 PRK14529 adenylate kinase; Pro 96.3 0.01 2.2E-07 57.7 7.1 34 253-288 2-35 (223)
475 PF02562 PhoH: PhoH-like prote 96.3 0.011 2.3E-07 56.7 7.1 24 252-275 20-43 (205)
476 TIGR02768 TraA_Ti Ti-type conj 96.3 0.019 4.2E-07 65.4 10.4 73 251-323 368-452 (744)
477 PRK08233 hypothetical protein; 96.3 0.0046 9.9E-08 57.3 4.5 33 252-284 4-37 (182)
478 COG0529 CysC Adenylylsulfate k 96.3 0.013 2.7E-07 54.5 7.1 40 249-288 21-63 (197)
479 PRK00091 miaA tRNA delta(2)-is 96.3 0.0033 7.1E-08 64.0 3.7 36 252-287 5-40 (307)
480 TIGR00959 ffh signal recogniti 96.3 0.16 3.5E-06 54.1 16.5 73 250-322 98-194 (428)
481 PF10236 DAP3: Mitochondrial r 96.3 0.19 4.1E-06 51.3 16.5 96 310-405 156-283 (309)
482 cd03246 ABCC_Protease_Secretio 96.3 0.02 4.4E-07 53.0 8.7 28 248-275 25-52 (173)
483 COG0467 RAD55 RecA-superfamily 96.2 0.007 1.5E-07 60.0 5.7 41 246-286 18-61 (260)
484 PF05970 PIF1: PIF1-like helic 96.2 0.022 4.8E-07 59.5 9.6 27 250-276 21-47 (364)
485 PRK06995 flhF flagellar biosyn 96.2 0.036 7.7E-07 59.8 11.3 26 250-275 255-280 (484)
486 cd01125 repA Hexameric Replica 96.2 0.11 2.5E-06 50.6 14.1 21 254-274 4-24 (239)
487 PRK14526 adenylate kinase; Pro 96.2 0.0048 1E-07 59.5 4.3 33 253-287 2-34 (211)
488 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.2 0.025 5.5E-07 53.7 9.3 34 252-285 39-79 (205)
489 cd03214 ABC_Iron-Siderophores_ 96.2 0.026 5.6E-07 52.6 9.1 28 248-275 22-49 (180)
490 TIGR02538 type_IV_pilB type IV 96.2 0.012 2.6E-07 65.1 7.6 94 215-321 293-396 (564)
491 PLN02165 adenylate isopentenyl 96.2 0.0043 9.4E-08 63.5 3.9 34 251-284 43-76 (334)
492 PRK00889 adenylylsulfate kinas 96.2 0.0079 1.7E-07 55.7 5.3 36 250-285 3-41 (175)
493 PRK10078 ribose 1,5-bisphospho 96.2 0.0054 1.2E-07 57.6 4.2 29 252-280 3-31 (186)
494 KOG3928 Mitochondrial ribosome 96.2 0.15 3.2E-06 53.2 14.8 116 311-430 316-458 (461)
495 PRK05541 adenylylsulfate kinas 96.1 0.0055 1.2E-07 56.8 4.0 28 249-276 5-32 (176)
496 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.019 4.1E-07 59.0 8.1 60 217-282 59-120 (358)
497 cd03223 ABCD_peroxisomal_ALDP 96.1 0.036 7.8E-07 51.0 9.3 28 248-275 24-51 (166)
498 PF00488 MutS_V: MutS domain V 96.1 0.073 1.6E-06 52.1 11.9 103 252-368 44-168 (235)
499 COG2274 SunT ABC-type bacterio 96.1 0.03 6.6E-07 63.2 10.3 28 248-275 496-523 (709)
500 cd03285 ABC_MSH2_euk MutS2 hom 96.1 0.09 2E-06 51.0 12.4 25 250-274 29-53 (222)
No 1
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-56 Score=444.19 Aligned_cols=306 Identities=54% Similarity=0.884 Sum_probs=284.1
Q ss_pred CCCCcchHHHH-HHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHH
Q 010888 188 LLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTM 266 (498)
Q Consensus 188 ~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~ 266 (498)
..+.|...+.. .+.+.+.+++..+.|+++|+||.|+.++|+-|++++..|+..|++|.++..|+++||++||||||||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 45666666655 67788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHH
Q 010888 267 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346 (498)
Q Consensus 267 lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ 346 (498)
||+|+|.+++..|+.|+.+.+.++|.|++++.++-+|+.|+.++|++|||||||+|+..|+.. .+|+.++++.++||.+
T Consensus 261 LAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 261 LAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQ 339 (491)
T ss_pred HHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988764 7899999999999999
Q ss_pred hhCCccCCCc---EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHH
Q 010888 347 MDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 423 (498)
Q Consensus 347 ld~~~~~~~~---viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~ 423 (498)
|||....... |+|+|+||.||++|++++|||.+.|++|+|+.+.|..+++..++......+++++.|++.++||||+
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChH
Confidence 9999766555 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh-hhHHHHHHHHHHhchh
Q 010888 424 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 495 (498)
Q Consensus 424 dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~-~~~~~~~~~~~~~g~~ 495 (498)
||.++|++|.+.++||..+.+.............. .|++++||+.|+++++||++ .++.+|++|.++|||.
T Consensus 420 DI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998887766555444444444 67999999999999999998 7899999999999984
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-47 Score=402.24 Aligned_cols=270 Identities=43% Similarity=0.668 Sum_probs=250.8
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..|+...+.|+++|+||.|++++|++|++.+.+|+++++.|.+. ..|+++||||||||||||++|+++|++++.+|+.
T Consensus 419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 344666677899999999999999999999999999999999987 6999999999999999999999999999999999
Q ss_pred EeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 282 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 282 v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
|++.++.++|+|++++.++.+|++|+..+|||||+||||++...|++... .+..+++++||++|||+... .+|+||+
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~-k~V~ViA 575 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEAL-KNVLVIA 575 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHccccccc-CcEEEEe
Confidence 99999999999999999999999999999999999999999999974333 78899999999999999765 4599999
Q ss_pred EeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 362 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 362 aTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
+||+|+.+|++++| ||++.+++|+||.+.|.+||+.++++.+...++++++||+.|+||||+||..+|++|+..++++
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHH
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD 491 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~ 491 (498)
..+. ..|+.+||++|++..+++.+. ++..|++|.+.
T Consensus 656 ~i~a----------------~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 656 SIEA----------------TEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred hccc----------------ccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 5541 129999999999999999876 57999998764
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-46 Score=370.04 Aligned_cols=249 Identities=40% Similarity=0.650 Sum_probs=229.5
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..+.|++++++|.|+++.++++++.+..|+++|+.|... ..||++||||||||||||+||||+|++.+..|+.+.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 346799999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
..+|.|++.+.++.+|..|+.++||||||||||+++.+|.+.. +.....++..-+||.+|||+...+ +|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCCc
Confidence 9999999999999999999999999999999999999886543 233345667778999999997654 59999999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.||||++| ||++.|+||+|+.+.|.+||+.+.+++....+++++.||+.++|+||+||+++|.+|.+.|+|+-.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R--- 377 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR--- 377 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999622
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
. .+|++||.+|..++..
T Consensus 378 ---~------------~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 ---D------------EVTMEDFLKAVEKVVK 394 (406)
T ss_pred ---C------------eecHHHHHHHHHHHHh
Confidence 1 2999999999988644
No 4
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-46 Score=361.71 Aligned_cols=297 Identities=48% Similarity=0.835 Sum_probs=264.8
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 196 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 196 e~~~~~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+..+++..+...+..+.|+++|+|+.|++.+|+.|++.+.+|++.|.+|.+...|++++||||||||||+.||+++|.+.
T Consensus 111 e~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 111 EKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 34455566777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC
Q 010888 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 355 (498)
Q Consensus 276 ~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 355 (498)
+..|+.|+.++++++|.|++++.++.+|+.|+.+.|+||||||||++++.|.++ +++.++++..+|+.+|+|+-..+.
T Consensus 191 nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 191 NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCCC
Confidence 999999999999999999999999999999999999999999999999987754 567789999999999999988888
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAM 434 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~ 434 (498)
.|+|+++||-||.||.+++|||+..|++|+|+...|..+++.++...+.. .+.|+.+|+++|+||+|+||.-+++.|.+
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 89999999999999999999999999999999999999999999887765 46789999999999999999999999999
Q ss_pred HHHHHHHHHhhc--h---------hc-c---CCC--------------CCCCCCCCCCHHHHHHHHhccCCChhh-hHHH
Q 010888 435 QPLRRLMVLLEG--R---------QE-V---APD--------------DELPQIGPIRPEDVEIALKNTRPSAHL-HAHR 484 (498)
Q Consensus 435 ~a~rrl~~~le~--~---------~~-~---~~~--------------~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~ 484 (498)
..+|+......- . .. + .++ +.+ -..++|+.||..+|...+|...+ ++.+
T Consensus 349 ePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl-~eP~vt~~D~~k~l~~tkPTvn~~Dl~k 427 (439)
T KOG0739|consen 349 EPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKL-LEPPVTMRDFLKSLSRTKPTVNEDDLLK 427 (439)
T ss_pred hhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhc-cCCCccHHHHHHHHhhcCCCCCHHHHHH
Confidence 999987652210 0 00 0 011 111 13579999999999999999875 6999
Q ss_pred HHHHHHHhchh
Q 010888 485 YEKFNADYGSE 495 (498)
Q Consensus 485 ~~~~~~~~g~~ 495 (498)
.++|.++||+|
T Consensus 428 ~~~Ft~dFGqE 438 (439)
T KOG0739|consen 428 HEKFTEDFGQE 438 (439)
T ss_pred HHHHHHhhccC
Confidence 99999999987
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-46 Score=386.51 Aligned_cols=287 Identities=33% Similarity=0.579 Sum_probs=255.6
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..|+.....|+++|+||.|+++++.+|..++.+|.++|+.|..+ ...+.+||||||||||||+||+|+|++.+..|+.
T Consensus 496 SakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis 575 (802)
T KOG0733|consen 496 SAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS 575 (802)
T ss_pred chhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence 344666667899999999999999999999999999999999986 7778999999999999999999999999999999
Q ss_pred EeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 282 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 282 v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
|.+.++..+|+|++++.++.+|..|+...|||||+||+|+|.+.|+... ...+.+++++||.+|||+..+.+ |.||+
T Consensus 576 VKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g-V~via 652 (802)
T KOG0733|consen 576 VKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG-VYVIA 652 (802)
T ss_pred ecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-eEEEe
Confidence 9999999999999999999999999999999999999999999988654 55678999999999999976654 99999
Q ss_pred EeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcC--CCCCCCCCCHHHHHHHhc--CCcHHHHHHHHHHHHhH
Q 010888 362 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEESLPYDLLVERTE--GYSGSDIRLVSKEAAMQ 435 (498)
Q Consensus 362 aTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~--~~~~~~~~~l~~La~~t~--g~s~~dL~~L~~~A~~~ 435 (498)
+||+|+.+||+++| ||+..+++++|+.++|.+||+.+.+ +.++..++++++||+.+. ||||+||..||++|...
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~ 732 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASIL 732 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999 677788999999999876 99999999999999999
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhch
Q 010888 436 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 494 (498)
Q Consensus 436 a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~ 494 (498)
++++.+...+....-..-.. ....++..||++|+++++||.++ +...|+..++.+|.
T Consensus 733 AL~~~~~~~~~~~~~~~~~~--~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 733 ALRESLFEIDSSEDDVTVRS--STIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred HHHHHHhhccccCcccceee--eeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcc
Confidence 99987764443222111000 02238899999999999999886 57999999999883
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-45 Score=388.60 Aligned_cols=283 Identities=32% Similarity=0.547 Sum_probs=259.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
...|+++|+||.|++++|.++.+.+..|++++++|.....+..|||||||||||||++|||+|.++...|+.|.+.++..
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 35799999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-CCCcEEEEEEeCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPWE 368 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viVIaaTn~p~~ 368 (498)
.|+|+++++++.+|++|+..+|||||+||+|+++|.|+..+..+.+..+++++|+.++|++.+ ....|+||+|||+|+.
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 999999999999999999999999999999999999999888899999999999999999976 6778999999999999
Q ss_pred CCHHHHh--cccceeEecCC-CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc-CCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 369 LDAAMLR--RLEKRILVPLP-DTEARRAMFESLLPSQTGEESLPYDLLVERTE-GYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 369 Ld~al~~--Rf~~~i~~~~P-d~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~-g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
|||+++| ||++-+++.++ |.+.+..+|+...++..++.++++.++|+++. .|||+|+..+|..||..|++|..+.+
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999998 66779999999999999999999999999975 69999999999999999999988877
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 493 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g 493 (498)
+......... .+...-++++||.+++++++||.+. |+.+|+.....|.
T Consensus 904 e~g~~~~~e~-~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 904 ESGTISEEEQ-ESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhcccccccc-CCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 7553222222 2233349999999999999999875 6899998887763
No 7
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.3e-44 Score=339.76 Aligned_cols=298 Identities=30% Similarity=0.431 Sum_probs=252.3
Q ss_pred CCChhhHHHHhhhhcCCCcccchhHHHHHHHHhhcCCCCCCcchHH-------------HHHHHHHhhhhhh-cCCCCCC
Q 010888 151 TSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAE-------------TRALAESLCRDII-RGSPDVK 216 (498)
Q Consensus 151 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-------------~~~~~~~~~~~~~-~~~~~~~ 216 (498)
..++.+|+.|+|+||.+.....+.+++| .++.|++.+-- +..+.++-.++.. ...++.+
T Consensus 47 ~dn~~~F~~YArdQW~Ge~v~eg~ylFD-------~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~~~~~~e~~~~it 119 (368)
T COG1223 47 DDNPEVFNIYARDQWLGEVVREGDYLFD-------TRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPREEDREIISDIT 119 (368)
T ss_pred cCCHHHHHHHHHHhhcceeeecCceEee-------cccccccceeEEEEeCCCCceecceEEEEecCcchhhhhhhcccc
Confidence 3489999999999999999999988763 34555555410 0000111112222 2347899
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcH
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE 296 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~ 296 (498)
|+|++|++++|+.++- +...+..|+.|..+. |++||+|||||||||++|+++|++.+.|++.+++.++.+.++|+..
T Consensus 120 ~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdga 196 (368)
T COG1223 120 LDDVIGQEEAKRKCRL-IMEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGA 196 (368)
T ss_pred HhhhhchHHHHHHHHH-HHHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHH
Confidence 9999999999999986 455688899988764 3799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhc
Q 010888 297 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRR 376 (498)
Q Consensus 297 ~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~R 376 (498)
+.++.+++.|+..+|||+||||+|+++.+|..+...++++. +++.||+.|||+.. +..|+.|++||+|+.||+++++|
T Consensus 197 r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsE-iVNALLTelDgi~e-neGVvtIaaTN~p~~LD~aiRsR 274 (368)
T COG1223 197 RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSE-IVNALLTELDGIKE-NEGVVTIAATNRPELLDPAIRSR 274 (368)
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHH-HHHHHHHhccCccc-CCceEEEeecCChhhcCHHHHhh
Confidence 99999999999999999999999999999988777666654 78999999999984 45589999999999999999999
Q ss_pred ccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHH-HHHHHHhHHHHHHHHHhhchhccCCCCC
Q 010888 377 LEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL-VSKEAAMQPLRRLMVLLEGRQEVAPDDE 455 (498)
Q Consensus 377 f~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~-L~~~A~~~a~rrl~~~le~~~~~~~~~~ 455 (498)
|...|+|.+|+.++|..|++.+++..++..+.+++.+++++.|+||+||.. +++.|.+.|+++ .+.
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e------d~e------- 341 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE------DRE------- 341 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh------chh-------
Confidence 999999999999999999999999999999999999999999999999976 788888887764 221
Q ss_pred CCCCCCCCHHHHHHHHhccCCCh
Q 010888 456 LPQIGPIRPEDVEIALKNTRPSA 478 (498)
Q Consensus 456 ~~~~~~It~eD~~~AL~~~~ps~ 478 (498)
.|+.+||+.|+++.+++-
T Consensus 342 -----~v~~edie~al~k~r~~r 359 (368)
T COG1223 342 -----KVEREDIEKALKKERKRR 359 (368)
T ss_pred -----hhhHHHHHHHHHhhcccc
Confidence 289999999999866653
No 8
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=345.26 Aligned_cols=282 Identities=40% Similarity=0.699 Sum_probs=252.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
..-.++|+||.|++.+++++++.+..|+++|++|.. +..|+++|||+||||||||++|+++|++.|.+|+.|+.+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 345688999999999999999999999999999954 388999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC-cEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-LVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-~viVIaaTn~p~ 367 (498)
++|.|++++.++.+|..|....|+||||||+|.+...| ...+|+..+.+.++|+..+||+..+.. .|+|++|||+|.
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999998 366899999999999999999965544 799999999999
Q ss_pred CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh---
Q 010888 368 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL--- 444 (498)
Q Consensus 368 ~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l--- 444 (498)
+||.+++||+...+++++|+.++|..||+.+++......++|+.++|..|.||||+||.++|+.|+..++|+++..-
T Consensus 243 DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 243 DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -hchhccCCCCCC------CCCCCCCHHHHHHHHhccCCChhh---hHHHHHHHHHHhch
Q 010888 445 -EGRQEVAPDDEL------PQIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGS 494 (498)
Q Consensus 445 -e~~~~~~~~~~~------~~~~~It~eD~~~AL~~~~ps~~~---~~~~~~~~~~~~g~ 494 (498)
+......+.... -..+|++++||..++..+-++... .....+.|++.||+
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 111111111111 125889999999999999888543 37899999999986
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-42 Score=356.76 Aligned_cols=281 Identities=36% Similarity=0.542 Sum_probs=247.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.++++|.+|.|++....+|.+.+.. +++|+.|..+ +.|+++||||||||||||+||+++|++++.||+.+++.++.+.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3578899999999999999998877 8899988776 8999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC---CCcEEEEEEeCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLPW 367 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~---~~~viVIaaTn~p~ 367 (498)
+.|++++.++.+|+.|...+|||+||||||++.++|... ..+..++++.+|+..||++... +.+|+||+|||+|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999999863 4556799999999999998654 56799999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.||++|+| ||++.|.+..|+..+|.+||+.+++...+..+.++..||+.|.||.|+||.+||.+|+.-+++|.++..+
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999887444
Q ss_pred chhccCC---C-------------------------------------C----CCCCCCCCCHHHHHHHHhccCCChhhh
Q 010888 446 GRQEVAP---D-------------------------------------D----ELPQIGPIRPEDVEIALKNTRPSAHLH 481 (498)
Q Consensus 446 ~~~~~~~---~-------------------------------------~----~~~~~~~It~eD~~~AL~~~~ps~~~~ 481 (498)
.-...++ + + .....-.|+.+||+.|+..++||+..+
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 2000000 0 0 001122488999999999999999877
Q ss_pred ---HHHHHHHHHHhchh
Q 010888 482 ---AHRYEKFNADYGSE 495 (498)
Q Consensus 482 ---~~~~~~~~~~~g~~ 495 (498)
-.+-..|.+..+.+
T Consensus 501 GF~tVPdVtW~dIGaL~ 517 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALE 517 (802)
T ss_pred cceecCCCChhhcccHH
Confidence 26677788777654
No 10
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-40 Score=335.80 Aligned_cols=240 Identities=35% Similarity=0.569 Sum_probs=219.1
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
.+++|+|+.|++++|++|.+++ .+++.|+.|.++ ..-|++|||.||||||||+||||+|.+.+.||++.+++++...+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 4688999999999999999965 567888888876 77889999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~ 371 (498)
+|...+.++.+|..|+..+||||||||+|++..+|...... ..++.+++||.+|||+..+. .|+||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~--y~kqTlNQLLvEmDGF~qNe-GiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH--YAKQTLNQLLVEMDGFKQNE-GIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH--HHHHHHHHHHHHhcCcCcCC-ceEEEeccCChhhhhH
Confidence 99999999999999999999999999999999998765443 67899999999999997654 5999999999999999
Q ss_pred HHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 010888 372 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449 (498)
Q Consensus 372 al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~ 449 (498)
++.| ||++++.+|.||..-|.+||+.++.+.....++|+.-||+-|.||+|+||.+|++.|+..|... ++.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------ga~- 527 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------GAE- 527 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc------Ccc-
Confidence 9999 9999999999999999999999999999999999999999999999999999999999887642 222
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 450 VAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 450 ~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
.++|.|++.|=.++
T Consensus 528 -----------~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 528 -----------MVTMKHLEFAKDRI 541 (752)
T ss_pred -----------cccHHHHhhhhhhe
Confidence 28999998887664
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-38 Score=356.03 Aligned_cols=287 Identities=41% Similarity=0.655 Sum_probs=248.6
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
++.....|.++|++|+|++.+|+.|++.+.+++.+++.+... ..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 441 ~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 441 REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 334445688999999999999999999999999999988875 6788999999999999999999999999999999999
Q ss_pred cccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC
Q 010888 285 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 364 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn 364 (498)
+++.++|+|++++.++.+|..|+...|+||||||+|.+++.++... .....++++++|+..|+++... .+++||+|||
T Consensus 521 ~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aTn 598 (733)
T TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQEL-SNVVVIAATN 598 (733)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCC-CCEEEEEeCC
Confidence 9999999999999999999999999999999999999998876432 2345678999999999998654 4599999999
Q ss_pred CCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 365 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 365 ~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
+|+.+|++++| ||+..+++++|+.++|.+||+.+.++.+...+.+++.+|+.+.||||+||..+|++|+..++++...
T Consensus 599 ~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 599 RPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred ChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 9999999999999999999999999888888899999999999999999999999999999998654
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhch
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 494 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~ 494 (498)
..................+|+++||.+|+++++||.++ ++..|++|.+.||.
T Consensus 679 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 679 SPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 32211000000001122469999999999999999886 57999999999974
No 12
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-39 Score=329.94 Aligned_cols=286 Identities=52% Similarity=0.822 Sum_probs=256.6
Q ss_pred HHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 201 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
...+.+++....+++.|+++.|++.+|+.+.+.+.+|+.++..|.+...+.+++||.||||||||+|+++||.|++..|+
T Consensus 136 ~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff 215 (428)
T KOG0740|consen 136 IEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFF 215 (428)
T ss_pred hHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEe
Confidence 34456777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-CCCcEEE
Q 010888 281 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFV 359 (498)
Q Consensus 281 ~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viV 359 (498)
.++++.+.++|+|++++.++.+|..|+..+|+|+||||+|.++.+|. ...++.++++..+++..+++... .+.+|+|
T Consensus 216 ~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs--~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 216 NISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS--DNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC--CcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999984 44667788999999999888744 4458999
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 438 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~r 438 (498)
|+|||.|+.+|.++++||...+++|+|+.+.|..+|..++.+.+.. .+.+++.+++.|+||+++||..+|++|++...|
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 9999999999999999999999999999999999999999887443 457899999999999999999999999999998
Q ss_pred HHHHH--hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 439 RLMVL--LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 439 rl~~~--le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
.+... ++. + .....++++..||+.+++..+|+++. .+..|++|+..||+.
T Consensus 374 ~~~~~~~~~~---~----~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 374 ELGGTTDLEF---I----DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred hcccchhhhh---c----chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 76553 211 1 12334779999999999999999886 489999999999985
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-36 Score=324.29 Aligned_cols=257 Identities=46% Similarity=0.724 Sum_probs=233.6
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhcc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 207 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 207 ~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~-~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
++....+.++|++++|++.+++.+++.+.+++.+++.+.. ...+++++|||||||||||++|+++|++++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4455678999999999999999999999999999998876 477888999999999999999999999999999999999
Q ss_pred ccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 286 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
++.++|.|++++.++.+|..|+..+||||||||+|++++.++.....+ ..+++++++..++++....+ |+||++||+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~--~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS--GRRVVGQLLTELDGIEKAEG-VLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH--HHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence 999999999999999999999999999999999999999987543322 26899999999999876554 889999999
Q ss_pred CCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCC--CCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 366 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 366 p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~--~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
|+.+|++++| ||+..+++++||.++|.+|++.++..... ..+.++..+++.++||+++||..+|++|...+.++..
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999985554 4688999999999999999999999999999998754
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHHHH
Q 010888 442 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 488 (498)
Q Consensus 442 ~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~~~~~~~ 488 (498)
..+++.+||..|++..+|+.. |++|
T Consensus 468 -----------------~~~~~~~~~~~a~~~~~p~~~-----~~~~ 492 (494)
T COG0464 468 -----------------RREVTLDDFLDALKKIKPSVT-----YEEW 492 (494)
T ss_pred -----------------cCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence 124999999999999999987 8888
No 14
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=313.37 Aligned_cols=231 Identities=35% Similarity=0.638 Sum_probs=215.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.....|+||.|+.++|+.+.+.+.+|.+||..|... .+-+.++|||||||||||+||.++|..++..|+.|.+.++.++
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 344899999999999999999999999999999876 7777899999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
|.|.+++.++.+|.+|+..+|||||+||+|+++|+|+.. ...+..+++++|+.+|||...- ..|.|+|+|.+|+.+|
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Egl-~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEGL-DGVYILAATSRPDLID 817 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhcccccc-ceEEEEEecCCccccC
Confidence 999999999999999999999999999999999998743 3456789999999999999764 4599999999999999
Q ss_pred HHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 371 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 371 ~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
|+++| |+++.++.++|+..+|.+|++.+........++|++.+|.+|+||||+||..++..|.+.++++.++...
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999 9999999999999999999999999888899999999999999999999999999999999998776544
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=321.46 Aligned_cols=243 Identities=38% Similarity=0.596 Sum_probs=219.7
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
...++|.|+.|++++|++|.+++ .++++|+.|..+ ...|+++||+||||||||+||+|+|.+.+.||+.++++++...
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 45589999999999999999965 568888888776 8999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc--cchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~--~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
++|.....++.+|..|+...|||+||||||++...|+. ........+..+++|+.+|||+... ..|+|+++||+|+.
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDI 462 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccc
Confidence 99999999999999999999999999999999998852 2234455678999999999999766 56999999999999
Q ss_pred CCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 369 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 369 Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
||++++| ||++.+++++|+...|..|++.+++..... .+.++..+|.+|.||+|+||.++|++|+..++|+-.
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~---- 538 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL---- 538 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc----
Confidence 9999999 999999999999999999999999998885 667888899999999999999999999999998622
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
..|+.+||..|++..
T Consensus 539 --------------~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 539 --------------REIGTKDLEYAIERV 553 (774)
T ss_pred --------------CccchhhHHHHHHHH
Confidence 238999999999954
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=280.42 Aligned_cols=246 Identities=38% Similarity=0.631 Sum_probs=223.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.+.|.+++.||.|++-.|+++++.+..|+.+.+++... ..||++||+|||||||||+||+++|+.....|+.+.++++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45689999999999999999999999999999988875 89999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.+|.|+..+.++.+|+.|+.++|+||||||+|+++.+|-+.. +......+++-+|+.+|+|+... .+|-||.+||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-TNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-cceEEEEecCccc
Confidence 999999999999999999999999999999999998875433 23344567888899999999654 4588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.|||+++| |+++.|+||+||..+++-++..+..++.+..++|++.+..+-+..|++||..+|++|.+.++|+..
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr---- 381 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR---- 381 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999998521
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
. -+...||+++-+..
T Consensus 382 --y------------vvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 --Y------------VVLQKDFEKAYKTV 396 (408)
T ss_pred --e------------eeeHHHHHHHHHhh
Confidence 1 17889999988764
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=304.87 Aligned_cols=249 Identities=39% Similarity=0.642 Sum_probs=221.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|+++|+||+|++.+++++++.+.+|+.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35789999999999999999999999999999988875 68889999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.++.|.+++.++.+|..++...|+||||||+|.++..+..... ......+++..++..++++.... ++.||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC-CEEEEEecCCch
Confidence 9999999999999999999999999999999999877643221 12234567788888898875443 588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|++++| ||+..+++++|+.++|..|++.++.......+.++..++..+.||||+||..+|++|...++++-.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~---- 371 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR---- 371 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 99999998 999999999999999999999999988888889999999999999999999999999999887511
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
..|+++||.+|+++....
T Consensus 372 --------------~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 372 --------------YVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------CccCHHHHHHHHHHHHhc
Confidence 139999999999987554
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-35 Score=278.56 Aligned_cols=250 Identities=38% Similarity=0.609 Sum_probs=225.6
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
+....|+.+++-+.|++...+++++.+..|.++|++|..+ ...|+++|||||||||||++|+++|+...+.|+.+++++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 4456899999999999999999999999999999999987 788899999999999999999999999999999999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch--hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATN 364 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn 364 (498)
+..+|.|+..+.++.+|-.|+.++|+|||.||||++...|.+... ++++ .+..-+|+.++||+.... ++-||.+||
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfeatk-nikvimatn 294 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEATK-NIKVIMATN 294 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhcccccccc-ceEEEEecc
Confidence 999999999999999999999999999999999999998865332 3343 455667889999986544 488999999
Q ss_pred CCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 365 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 365 ~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
+.+-||++++| |+++.|+||+|+.+.|.+||+.+.+++.+....++..+|.+..|.||+++..+|.+|.+.++|+-
T Consensus 295 ridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer-- 372 (404)
T KOG0728|consen 295 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER-- 372 (404)
T ss_pred ccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999852
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+ ..+|.+||+-|..+.-..
T Consensus 373 ----r------------vhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 373 ----R------------VHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred ----h------------ccccHHHHHHHHHHHHhc
Confidence 1 128999999999875433
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.2e-34 Score=306.15 Aligned_cols=255 Identities=24% Similarity=0.342 Sum_probs=217.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
.+..+|++|.|++.+|+.+.+....+... .......+++++||+||||||||++|+++|++++.+++.++++.+.+++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~~--~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQ--ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhhHH--HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 46788999999999999998755332111 1122367789999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~ 371 (498)
+|+++..++.+|..++..+||||||||+|.++..++.. .......+++..++..++. ...+|+||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999998764432 2344567888889988874 3456999999999999999
Q ss_pred HHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 372 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 372 al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~--~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
+++| ||+..+++++|+.++|.+||+.++.+.... .+.+++.+++.|.||||+||+.+|.+|...+..+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 9998 999999999999999999999999876543 4778999999999999999999999998876542
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCCh---hhhHHHHHHHHHH
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSA---HLHAHRYEKFNAD 491 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~---~~~~~~~~~~~~~ 491 (498)
.++++.+||..|++++.|++ .+++..+++|...
T Consensus 448 -----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 448 -----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 13499999999999999985 3468999999875
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=285.85 Aligned_cols=246 Identities=36% Similarity=0.609 Sum_probs=222.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|..++.||.|+++..+++++.+..|+.+|+++... ..||++|+|||+||||||+||+|+|++....|+.+-++++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 35688999999999999999999999999999999876 89999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.+|.|+..+.++.+|+.|..++|+|+||||||++..+|.+..+ ......+..-+|+++++|+..++ .|-||.+||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg-DvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG-DVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccC-CeEEEEeccccc
Confidence 9999999999999999999999999999999999998865433 22233444557888999997755 488999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.|||++.| |+++.|+|+.||...++.|+..+...+.+..+++++++...-+.+||+||.++|.+|.+.|+|+-..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm--- 412 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM--- 412 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh---
Confidence 99999999 9999999999999999999999999999999999999998888999999999999999999985322
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
.++++||.+|.+++
T Consensus 413 ---------------~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 413 ---------------KVTMEDFKKAKEKV 426 (440)
T ss_pred ---------------hccHHHHHHHHHHH
Confidence 18999999998764
No 21
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-35 Score=280.59 Aligned_cols=248 Identities=34% Similarity=0.570 Sum_probs=223.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|...++||.|++..+++|.+.+..|+.+.+.|..+ ..||++||+|||||||||++||+.|.+.+..|..+-+..+.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 45688899999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..|.|...+.++..|..|+...|+||||||+|++..+|-++.. ......+..-+|+.+++|++... .|-||++||+.+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~-~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD-RVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc-ceEEEeeccccc
Confidence 9999999999999999999999999999999999988764332 22233455567888999997654 488999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
-|||+++| |+++.|+||.|+.+.|..|++.+.+++....++++++||+.|++|+|++.+++|-+|.+.++||-..
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at--- 398 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT--- 398 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc---
Confidence 99999998 9999999999999999999999999999999999999999999999999999999999999986221
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
.++.+||.+.+.+++.
T Consensus 399 ---------------ev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 399 ---------------EVTHEDFMEGILEVQA 414 (424)
T ss_pred ---------------cccHHHHHHHHHHHHH
Confidence 2899999998877643
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.2e-34 Score=300.74 Aligned_cols=254 Identities=40% Similarity=0.610 Sum_probs=223.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|.++|++|+|+++.++++.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 446789999999999999999999999999999988775 6888999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh-hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
...+.|..++.++.+|..++...|+||||||+|.++..+...... .....+.+..++..++++... .++.||+|||++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~v~VI~aTn~~ 280 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-GNVKIIAATNRI 280 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-CCEEEEEecCCh
Confidence 999999999999999999999999999999999998776543221 122344556777778776543 358899999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.+|+++++ ||+..+++++|+.++|.+||+.++.......+.++..++..|.||+++||+.+|++|...++++-
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---- 356 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---- 356 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998888888999999999999999999999999999988751
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 481 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~ 481 (498)
...|+.+||.+|+..++++...+
T Consensus 357 --------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------CCCcCHHHHHHHHHHHhcccccc
Confidence 02399999999999999886654
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=274.78 Aligned_cols=247 Identities=35% Similarity=0.571 Sum_probs=222.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..+.|+++++|+.|+.+.++.+++.+..|+.+|+.|..+ ..|+++||+|||||||||++||++|++.+..|+.|-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 456799999999999999999999999999999998876 8999999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcccc--chhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~--~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
..+|+|+..+.++.+|+.|+....||||+||+|++.+.|-+. +...++ .+..-+++.+++|+..++ ++-|+.+||+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrtmleli~qldgfdprg-nikvlmatnr 325 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGFDPRG-NIKVLMATNR 325 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHHHHHHHHhccCCCCCC-CeEEEeecCC
Confidence 999999999999999999999999999999999999887543 333444 445566888999997655 4888999999
Q ss_pred CCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 010888 366 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443 (498)
Q Consensus 366 p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~ 443 (498)
|+.|||+++| |+++.++|.+||.+.|..|++.+.+.+....++.++-+|+.+..-+|++|+.+|.+|.+.++|.-..
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk- 404 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK- 404 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh-
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999874221
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 444 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 444 le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
..|..||.+|+.++.
T Consensus 405 -----------------~atekdfl~av~kvv 419 (435)
T KOG0729|consen 405 -----------------VATEKDFLDAVNKVV 419 (435)
T ss_pred -----------------hhhHHHHHHHHHHHH
Confidence 168999999988753
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-34 Score=302.48 Aligned_cols=260 Identities=37% Similarity=0.546 Sum_probs=228.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
....++|.|+.|.+++|+++.+.+ .+++.|+.|..+ ...|++|||+||||||||+||+++|.+.+.||+.++.+++..
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 357799999999999999999965 456677666554 788899999999999999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcccc-chhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
.++|.....++.+|..|+.++||||||||+|++...|... +..++..++.+++++.+|||+. .+..|+|+++||+|+-
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpdV 300 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPDV 300 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCccc
Confidence 9999999999999999999999999999999999988643 4456667789999999999998 4456999999999999
Q ss_pred CCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc
Q 010888 369 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 446 (498)
Q Consensus 369 Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~ 446 (498)
||++++| ||++.+.++.||...|.+|++.+++..++..++++..+|+.|.|++++|+.+++++|+..+.|+-.
T Consensus 301 lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~----- 375 (596)
T COG0465 301 LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK----- 375 (596)
T ss_pred chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC-----
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999998622
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhccC-----CC--hhhhHHHHHHHHH
Q 010888 447 RQEVAPDDELPQIGPIRPEDVEIALKNTR-----PS--AHLHAHRYEKFNA 490 (498)
Q Consensus 447 ~~~~~~~~~~~~~~~It~eD~~~AL~~~~-----ps--~~~~~~~~~~~~~ 490 (498)
..+++.||.+|..++- .+ .++..++-..|++
T Consensus 376 -------------~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhE 413 (596)
T COG0465 376 -------------KEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHE 413 (596)
T ss_pred -------------eeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHH
Confidence 2389999999988752 22 3444455455554
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.2e-33 Score=292.47 Aligned_cols=247 Identities=37% Similarity=0.587 Sum_probs=217.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|..+|+||.|++..++++.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 45688999999999999999999999999999988875 77889999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|.....++.+|..+....|+||||||+|.+..++..... ......+.+..++..++++... .++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~-~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR-GDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc-CCeEEEEecCChH
Confidence 9999999999999999999999999999999999887653221 1222344556788888887543 3588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|++++| ||+..|+|++|+.++|.+||+.++.......++++..++..+.|++++||..+|++|...|+++-
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~----- 408 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER----- 408 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999987 99999999999999999999999998888888999999999999999999999999999988752
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
+ ..|+.+||..|+.++.
T Consensus 409 -r------------~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 -R------------MKVTQADFRKAKEKVL 425 (438)
T ss_pred -C------------CccCHHHHHHHHHHHH
Confidence 1 1299999999999864
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=9.5e-33 Score=297.43 Aligned_cols=247 Identities=37% Similarity=0.575 Sum_probs=215.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|.++|+||+|++++|+++.+.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 346789999999999999999987765 6677666543 67788999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|...+.++.+|..++...|+||||||+|.+...++... ..+......++.++..|+++.... .++||+|||+|+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~-~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT-GVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC-CeEEEEecCChh
Confidence 999999999999999999999999999999999998876532 223345678889999999886544 489999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|++++| ||+..+++++|+.++|.+|++.++.......+.++..++..+.||+++||..++++|...+.++-
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~----- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN----- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999988777778889999999999999999999999988766531
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
..+|+.+||..|+.....
T Consensus 280 -------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 -------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred -------------CCCCCHHHHHHHHHHHhc
Confidence 124999999999998754
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=3.8e-31 Score=274.64 Aligned_cols=246 Identities=40% Similarity=0.646 Sum_probs=213.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|.+.|++|+|+++.++++++.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 35688999999999999999999999999999888765 67889999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh-hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|.....++.+|..++...|+||||||+|.+...+...... .....+.+..++..++++... .++.||+|||.++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCChh
Confidence 99999988999999999999999999999999998765432211 112234556677777776443 4588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|+++++ ||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||..++++|...++++-
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999997 99999999999999999999999988877777899999999999999999999999999988751
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
. ..|+.+||.+|+.++
T Consensus 348 -~------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -R------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred -C------------CccCHHHHHHHHHHh
Confidence 1 139999999999864
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=6.4e-31 Score=287.76 Aligned_cols=243 Identities=36% Similarity=0.581 Sum_probs=210.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.+.++|+|++|.+++++++.+.+.. ++.++.+... ...++++||+||||||||++|+++|++++.|++.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 4568999999999999999987654 6666666554 6677899999999999999999999999999999999999988
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcccc-chhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|.....++.+|..++...|+||||||+|.+...++.. ...+......++.|+..++++... .+++||++||+++.+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~L 334 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDIL 334 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHhh
Confidence 888888889999999999999999999999998776532 223344567788899999987644 458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
|++++| ||+..+.+++|+.++|.+||+.+++......+.++..+|..+.||+++||+.++++|+..+.|+-
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------- 407 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------- 407 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 999998 99999999999999999999999988777778889999999999999999999999988876641
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
...|+++||+.|+.++
T Consensus 408 -----------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------CCCcCHHHHHHHHHHH
Confidence 0239999999999876
No 29
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=281.30 Aligned_cols=256 Identities=34% Similarity=0.560 Sum_probs=231.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
++.. .++.|.......+++.+..++.++..+... .++++++|+|||||||||.+++++|++.+..++.+++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4555 789999999999999999999999988765 88899999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 292 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
.|++++.++..|+.+...+ |++|||||+|.+++++..... ..+++..+++..+++... ...++|+++||+|..||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998765433 568899999999999874 45589999999999999
Q ss_pred HHHHh-cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 010888 371 AAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449 (498)
Q Consensus 371 ~al~~-Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~ 449 (498)
++++| ||+..+.+..|+...|.+|++.+.+.++...+.++..+|..+.||+|+||..+|++|...+.|+
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999999886
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhchhc
Q 010888 450 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEI 496 (498)
Q Consensus 450 ~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~---~~~~~~~~~~~g~~~ 496 (498)
++++|..|+..++||+..+ ...-..|.+..|.|-
T Consensus 405 -------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~ 441 (693)
T KOG0730|consen 405 -------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEE 441 (693)
T ss_pred -------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHH
Confidence 5778888888888887654 255567777777653
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=3.1e-30 Score=274.28 Aligned_cols=271 Identities=28% Similarity=0.491 Sum_probs=212.4
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------
Q 010888 207 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT------- 278 (498)
Q Consensus 207 ~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~------- 278 (498)
.+....|+++|++|+|+++.++++++.+..++.+++.+... ..+++++|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 34557799999999999999999999999999999988765 7788999999999999999999999998544
Q ss_pred ---EEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 279 ---FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 279 ---~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
|+.+..+++..+|.|++++.++.+|..++.. .|+||||||+|.++..+.... .++..+.++++|+..++++.
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccc
Confidence 6677778889999999999999999888763 689999999999998775432 23345678899999999986
Q ss_pred cCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCC-CCC---------CCCCHHHHHHH---
Q 010888 352 QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ-TGE---------ESLPYDLLVER--- 416 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-~~~---------~~~~l~~La~~--- 416 (498)
.. .+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... +.. ...++..+++.
T Consensus 330 ~~-~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 330 SL-DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred cC-CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 54 458999999999999999998 999999999999999999999988642 221 11122223222
Q ss_pred --------------------------hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHH
Q 010888 417 --------------------------TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 470 (498)
Q Consensus 417 --------------------------t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~A 470 (498)
++.+||++|+++|.+|...++++.+.. ....|+++|+..|
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~--------------~~~~~~~~~l~~a 474 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG--------------GQVGLRIEHLLAA 474 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc--------------CCcCcCHHHHHHH
Confidence 344778888888888888888765421 1124999999999
Q ss_pred HhccCCCh--hhhHHHHHHHHHHhc
Q 010888 471 LKNTRPSA--HLHAHRYEKFNADYG 493 (498)
Q Consensus 471 L~~~~ps~--~~~~~~~~~~~~~~g 493 (498)
+..-.... ...-..=++|...-|
T Consensus 475 ~~~e~~~~~~~~~~~~~~~w~~~~~ 499 (512)
T TIGR03689 475 VLDEFRESEDLPNTTNPDDWARISG 499 (512)
T ss_pred HHHhhcccccCCCCCCHHHHhhhhC
Confidence 98743221 122334467877654
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=4.8e-30 Score=288.42 Aligned_cols=279 Identities=38% Similarity=0.580 Sum_probs=233.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.+.++|++|+|++.+++.+++.+..++.+++.+..+ ..+++++||+||||||||++|+++|++++.+++.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 477999999999999999999999999999988776 6788999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
+.|..+..++.+|+.+....|+||||||+|.+.+.++... .+..+++++.|+..++++... ..++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998765432 233467889999999988554 4588999999999999
Q ss_pred HHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch-
Q 010888 371 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR- 447 (498)
Q Consensus 371 ~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~- 447 (498)
+++++ ||+..+++++|+.++|.+||+.+.+......+.+++.+++.+.||+++|+..+++.|+..++++....-...
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 999999999999999999999998888777788999999999999999999999999999999866421110
Q ss_pred -hccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH---HHHHHHHHHhch
Q 010888 448 -QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGS 494 (498)
Q Consensus 448 -~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~---~~~~~~~~~~g~ 494 (498)
....+... .....++++||..|++..+|+...+. ..-..|.+..|.
T Consensus 409 ~~~~i~~~~-~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~ 458 (733)
T TIGR01243 409 EAEEIPAEV-LKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGL 458 (733)
T ss_pred ccccccchh-cccccccHHHHHHHHhhccccccchhhccccccchhhcccH
Confidence 01011111 11234899999999999999875432 223356555553
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=253.92 Aligned_cols=248 Identities=34% Similarity=0.558 Sum_probs=216.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
....+++|+.+.|......++.+.+..|+..++++.+. ..+|.+++||||||||||++|+++|..++..|+.+..+++.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 34567899999999999999999999999999999984 89999999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
+++.|++.+.++..|..|+...||+||+||+|++.+.+.... .......+.+-.|+.+|+++...+ .|-+|+|||+|+
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~-rVk~ImatNrpd 282 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLH-RVKTIMATNRPD 282 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcc-cccEEEecCCcc
Confidence 999999999999999999999999999999999998874332 223334455566677777775544 488999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.|+|+|+| |+++.++.|+|+...|..|++.+........+.+.+.+.+.++||+++|+++.|++|-.-+++....
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~--- 359 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD--- 359 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH---
Confidence 99999999 9999999999999999999998888777777888999999999999999999999999877764221
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
.+-+||+-.++++...
T Consensus 360 ---------------~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 360 ---------------EVLHEDFMKLVRKQAD 375 (388)
T ss_pred ---------------HHhHHHHHHHHHHHHH
Confidence 2678889888876543
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=7.5e-29 Score=273.83 Aligned_cols=246 Identities=33% Similarity=0.526 Sum_probs=212.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.....|+++.|.+.+++++.+.+.. +..+..+... ...++++||+||||||||+++++++++++.+|+.++++++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 3457799999999999999998766 3444444332 4566889999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|.....++.+|..++...|+||||||+|.+...+.... ..+...+++++.++..|+++... ..++||+|||+|+.+
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~l 303 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVL 303 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhc
Confidence 9999999999999999999999999999999998776432 23344567889999999988654 458999999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
|++++| ||++.+++++|+.++|.+||+.++...+...+.++..+++.+.|||++||.++|++|+..++|+ +.
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~------~~ 377 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------NK 377 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc------CC
Confidence 999998 9999999999999999999999999988888899999999999999999999999999988764 10
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
..|+.+||.+|+..+.+.
T Consensus 378 ------------~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 378 ------------RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ------------CcccHHHHHHHHHHHhcc
Confidence 239999999999877554
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-29 Score=280.14 Aligned_cols=264 Identities=34% Similarity=0.589 Sum_probs=223.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEec
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 284 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~ 284 (498)
....+.|++|.|++.++..|++.+..|+.||+.|... ..|+++||++||||||||+.|+++|..+ ...|+.-++
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 4567899999999999999999999999999999876 8999999999999999999999999988 356777788
Q ss_pred cccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC
Q 010888 285 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 364 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn 364 (498)
++..++|+|+.++.++.+|+.|+...|+|+|+||||-+++.+..+.. .....+++.|+..|+|+..++. |+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq-VvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ-VVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc-eEEEcccC
Confidence 89999999999999999999999999999999999999998865433 2346789999999999987665 88999999
Q ss_pred CCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 365 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 365 ~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
+|+.+|++++| ||++.++|++|+.+.|..|+..+...-.... ..-+..+|+.+.||.|+||+.+|.+|+..++++..
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 9999999999999999999998876655332 33467899999999999999999999999998765
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 442 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 442 ~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
..+........-+. .. ..+...||..|+.+..|+.+
T Consensus 495 Pq~y~s~~kl~~d~-~~-ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDV-AL-IKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred Ceeecccccccccc-hh-hhhhhHhhhhhhhccCCCCC
Confidence 54443332221111 11 12888899999988877754
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.5e-28 Score=282.71 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=167.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc----------cc------------------------
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------ 293 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~----------~G------------------------ 293 (498)
..+++||||+||||||||+||+++|.+++.||+.|+++++...+ .|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 57889999999999999999999999999999999999988643 11
Q ss_pred -------CcH--HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--cCCCcEEEEEE
Q 010888 294 -------DSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA 362 (498)
Q Consensus 294 -------~~~--~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~viVIaa 362 (498)
... ..++.+|+.|+..+||||||||||++..+.. ....+..|+..|++.. ....+|+||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 112 2378899999999999999999999976521 1234778889998763 23457999999
Q ss_pred eCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhc--CCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 363 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLL--PSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 363 Tn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l--~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
||+|+.||||++| ||++.|+++.|+..+|.+++..++ +...... ..+++.+|+.|.||+|+||.++|++|+..++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999887543 3333333 3578999999999999999999999999998
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 438 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 438 rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
++-. ..|+.+||+.|+.+..+.
T Consensus 1859 rq~k------------------s~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1859 TQKK------------------SIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HcCC------------------CccCHHHHHHHHHHHHhh
Confidence 8621 128899999999876443
No 36
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8e-29 Score=254.59 Aligned_cols=271 Identities=28% Similarity=0.433 Sum_probs=216.3
Q ss_pred CCCCCCcc--ccCcHHHHHHH-HHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhC-CeEEEEeccc
Q 010888 212 SPDVKWES--IKGLENAKRLL-KEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~--IvG~~~~k~~L-~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~-~~~i~v~~s~ 286 (498)
.|+-.|++ |.|++..-..+ +++.....-.|+..+++ ...-+++|||||||||||++||.|.+.++ .+---||+.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46666776 46766544333 44444444456665655 66678999999999999999999999995 3455689999
Q ss_pred cchhcccCcHHHHHHHHHHHHhc--------CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 287 VVSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~--------~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
+.++|+|+++.+++.+|..|... .-.||++||+|+++.+|+.......+...++++||..|||...-+ +++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-NIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-NIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh-cEE
Confidence 99999999999999999888631 225999999999999999887778888999999999999987554 499
Q ss_pred EEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCC----CCCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 010888 359 VLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ----TGEESLPYDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 359 VIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~----~~~~~~~l~~La~~t~g~s~~dL~~L~~~A 432 (498)
||+-||+.+.+|++|+| ||...+++.+||+.-|.+|++.+.+.+ .+..++|+.+||..|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999998876544 345789999999999999999999999999
Q ss_pred HhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHH
Q 010888 433 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYE 486 (498)
Q Consensus 433 ~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~~~~~ 486 (498)
...|+-|..+.- ......+. .. +.-.++++||..||.+++|+..-..+.|+
T Consensus 452 ~S~A~nR~vk~~-~~~~~~~~-~~-e~lkV~r~DFl~aL~dVkPAFG~see~l~ 502 (744)
T KOG0741|consen 452 QSFAMNRHVKAG-GKVEVDPV-AI-ENLKVTRGDFLNALEDVKPAFGISEEDLE 502 (744)
T ss_pred HHHHHHhhhccC-cceecCch-hh-hheeecHHHHHHHHHhcCcccCCCHHHHH
Confidence 999998876533 11221111 11 12249999999999999999754333333
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.7e-27 Score=238.48 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=142.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHh-----cCCeEEEEcCccch
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAI 322 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~-----~~p~VL~IDEiD~l 322 (498)
..+|++++||||||||||++|+++|++++.+++.++++++.++|.|++++.++.+|..|.. .+||||||||||++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 6888999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred hhhccccchhhHHHHHH-HHHHHHHhhCCc-----------cCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCH
Q 010888 323 ISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 388 (498)
Q Consensus 323 ~~~r~~~~~~~~~~~~i-~~~Ll~~ld~~~-----------~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~ 388 (498)
++.+... ......++ ..+|+..+|+.. .....|+||+|||+|+.||++++| ||++.+ .+|+.
T Consensus 225 ~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 225 AGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred CCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 9987632 23333444 478999988631 235569999999999999999999 999854 58999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC
Q 010888 389 EARRAMFESLLPSQTGEESLPYDLLVERTEG 419 (498)
Q Consensus 389 ~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g 419 (498)
++|.+||+.+++...+. ..++..|++.+.|
T Consensus 301 e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 301 EDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 99999999999886554 4667777777766
No 38
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=6.7e-25 Score=228.96 Aligned_cols=342 Identities=18% Similarity=0.222 Sum_probs=221.9
Q ss_pred HHHHHHHHHHhhcccccccCCCCCccccchhhHHHHHhhhhhhccccCc----------CCCCCCCCCCCCCCCCCCCCc
Q 010888 79 FILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKKIKEPE----------KGEITERPVSDGSSLNSNGHV 148 (498)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~g~~~~~~~~~ 148 (498)
..-++..|++.++++..++|+++.+.| .|.+|...+|...-+.+. ..+....+..+|.+...-...
T Consensus 115 ~~~~l~~il~~~~~~l~vvD~~G~~i~----~N~~~~~~~gl~~e~~~gk~~~~v~~~~~~s~~l~vl~~~kp~~~~~~~ 190 (560)
T COG3829 115 LRQRLEAILDSIDDGLLVVDEDGIIIY----YNKAYAKLLGLSPEEVLGKHLLDVVSAGEDSTLLEVLRTGKPIRDVVQT 190 (560)
T ss_pred HHHHHHHHHhhccCceEEEcCCCcEEE----EcHHHHHHhCCCHHHHcCCcHHHHHhccCCceehhhhhcCCcceeeeee
Confidence 456788999999999999999999999 999999999984322222 235566666777765544433
Q ss_pred ccCCChhh--HHHHhhhhcCCCcccchhHHHHHHHHhhcCCCCCCcchHHHHHHHHHhhhhhhcCCCCCCCccccCcHHH
Q 010888 149 QNTSDMAV--YEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENA 226 (498)
Q Consensus 149 ~~~~~l~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~IvG~~~~ 226 (498)
+.+..+.+ +..+... ...+... +...............-..........++|++|+|.+..
T Consensus 191 ~~~~~~i~~~~pv~~~g---~l~G~v~--------------~~~~~~~l~~l~~~~~~~~~~~~~~a~y~f~~Iig~S~~ 253 (560)
T COG3829 191 YNGNKIIVNVAPVYADG---QLIGVVG--------------ISKDVSELERLTRELEESEGLLRLKAKYTFDDIIGESPA 253 (560)
T ss_pred ecCCceeEeeccEecCC---cEEEEEE--------------eecchHHHHHHHHHHHHHhhhhccccccchhhhccCCHH
Confidence 33333211 0001111 1111111 011111111111111111112224567899999999999
Q ss_pred HHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch-------------h
Q 010888 227 KRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------------K 290 (498)
Q Consensus 227 k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~-------------~ 290 (498)
...+.+.+.. ....+.+|||.|++||||.++|++|++.+ +.||+.+||+.+.. .
T Consensus 254 m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GA 323 (560)
T COG3829 254 MLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGA 323 (560)
T ss_pred HHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCcc
Confidence 9988887643 45667899999999999999999999988 68999999977642 2
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
+.|.....-.++|+.|.. +.||||||..|+...|.+. .+.+++.-+..+.+......+|.||||||+ .|.
T Consensus 324 FTGA~~~GK~GlfE~A~g---GTLFLDEIgempl~LQaKL-----LRVLQEkei~rvG~t~~~~vDVRIIAATN~--nL~ 393 (560)
T COG3829 324 FTGASKGGKPGLFELANG---GTLFLDEIGEMPLPLQAKL-----LRVLQEKEIERVGGTKPIPVDVRIIAATNR--NLE 393 (560)
T ss_pred ccccccCCCCcceeeccC---CeEEehhhccCCHHHHHHH-----HHHHhhceEEecCCCCceeeEEEEEeccCc--CHH
Confidence 334333334567777776 5699999999976543322 244444444455566666678999999999 666
Q ss_pred HHHHh-cccceeEec-------CCCHHHHHHHHHHhcCCCCCCCCCCHHHHH----HHhcCCcHHHHHHHHHHHHhHHHH
Q 010888 371 AAMLR-RLEKRILVP-------LPDTEARRAMFESLLPSQTGEESLPYDLLV----ERTEGYSGSDIRLVSKEAAMQPLR 438 (498)
Q Consensus 371 ~al~~-Rf~~~i~~~-------~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La----~~t~g~s~~dL~~L~~~A~~~a~r 438 (498)
.++.. +|...++++ .|...+|.+-+..+. ..-++... +...|+++..+..|.++.|++++|
T Consensus 394 ~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~-------~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVR 466 (560)
T COG3829 394 KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLA-------EYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVR 466 (560)
T ss_pred HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHH-------HHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHH
Confidence 67666 676666554 466666654333222 11122222 225678999999999999999999
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHH-HHHhc
Q 010888 439 RLMVLLEGRQEVAPDDELPQIGPIRPEDVE-IALKN 473 (498)
Q Consensus 439 rl~~~le~~~~~~~~~~~~~~~~It~eD~~-~AL~~ 473 (498)
++.|.+++...+...+.. |+.+|+. ..+..
T Consensus 467 ELeNviER~v~~~~~~~~-----I~~~~lp~~~l~~ 497 (560)
T COG3829 467 ELENVIERAVNLVESDGL-----IDADDLPAFALEE 497 (560)
T ss_pred HHHHHHHHHHhccCCcce-----eehhhcchhhhcc
Confidence 999999988765555543 7777777 55554
No 39
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.7e-21 Score=191.91 Aligned_cols=214 Identities=24% Similarity=0.382 Sum_probs=164.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
...+-.|+++|-.....+.+.++...-- +. .....|-+++|+|||||||||++|+.+|..+|..+..+.+.++..-
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~aTa-NT---K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIATA-NT---KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHHhc-cc---ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 3456669999999999888887654321 11 1124566899999999999999999999999999999988876533
Q ss_pred cccCcHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
. .+.-..++.+|+-++... .-+|||||+|.++..|... ..++..+..++.||..-. .....++++.+||+|.++
T Consensus 424 G-~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt-ymSEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdl 498 (630)
T KOG0742|consen 424 G-AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT-YMSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDL 498 (630)
T ss_pred c-hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh-hhcHHHHHHHHHHHHHhc---ccccceEEEeccCCccch
Confidence 2 234557899999988754 4588999999999887643 345556777888877654 334558888999999999
Q ss_pred CHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC---------------------------CCCHHHHHHHhcCCcH
Q 010888 370 DAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE---------------------------SLPYDLLVERTEGYSG 422 (498)
Q Consensus 370 d~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~---------------------------~~~l~~La~~t~g~s~ 422 (498)
|.++-+|++..++||+|..++|..+|..++.++.... +..+.+.|++|+||||
T Consensus 499 DsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 499 DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9999999999999999999999999998875443210 1114568899999999
Q ss_pred HHHHHHHHHHH
Q 010888 423 SDIRLVSKEAA 433 (498)
Q Consensus 423 ~dL~~L~~~A~ 433 (498)
++|..|+....
T Consensus 579 REiakLva~vQ 589 (630)
T KOG0742|consen 579 REIAKLVASVQ 589 (630)
T ss_pred HHHHHHHHHHH
Confidence 99998876433
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=5.4e-21 Score=191.95 Aligned_cols=214 Identities=19% Similarity=0.249 Sum_probs=157.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhcc--C--CCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeccc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTG--L--LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 286 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~--~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s~ 286 (498)
++++|++++|+++.+++.+.. .++.... . ..++.++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999999876532 3332221 1 2244579999999999999999999976 24699999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+.+.+.|.++.....+++.+. ++||||||+|.+...+.. .+..+..++.|+..|+.. ...++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQ---RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcH
Confidence 999999988877777777764 489999999998643221 223466778888888743 2446777777542
Q ss_pred C-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHH------hcCC-cHHHHHHHHHHHH
Q 010888 367 W-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVER------TEGY-SGSDIRLVSKEAA 433 (498)
Q Consensus 367 ~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~------t~g~-s~~dL~~L~~~A~ 433 (498)
. .++|++++||+..++|+.++.+++..|++.++.+.....+.+ ...+... ...+ ++++++++++.+.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 1 357999999999999999999999999999987665443322 2233332 1233 3899999999999
Q ss_pred hHHHHHHHH
Q 010888 434 MQPLRRLMV 442 (498)
Q Consensus 434 ~~a~rrl~~ 442 (498)
.....|+..
T Consensus 252 ~~~~~r~~~ 260 (287)
T CHL00181 252 MRQANRIFE 260 (287)
T ss_pred HHHHHHHHc
Confidence 888887665
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.3e-20 Score=187.09 Aligned_cols=214 Identities=18% Similarity=0.188 Sum_probs=153.7
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccC---CCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeccc
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGL---LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 286 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~---~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s~ 286 (498)
+++++|++++|+++++.+.++.........+ .+...+++|+||||||||++|+++|+.+ ..+++++++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 5789999999999999887754432222222 2344689999999999999999999875 34788999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+.+.+.|+....++.+|+.+. ++||||||+|.|....+ ....+..++.++..++.. ...+++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~-----~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE-----KDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc-----cchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 999999999888888887764 47999999999864211 122345667788887743 2335555554332
Q ss_pred -----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh---------cCCcHHHHHHHHHH
Q 010888 367 -----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT---------EGYSGSDIRLVSKE 431 (498)
Q Consensus 367 -----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t---------~g~s~~dL~~L~~~ 431 (498)
..++|++++||...+.|+.++.+++..|++.++.......+.+ ++.+++.. ..-+++.+++++..
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2368899999988899999999999999999987655443322 33343321 12456777778877
Q ss_pred HHhHHHHHHH
Q 010888 432 AAMQPLRRLM 441 (498)
Q Consensus 432 A~~~a~rrl~ 441 (498)
|......|++
T Consensus 234 a~~~~~~r~~ 243 (261)
T TIGR02881 234 AIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHh
Confidence 7766655544
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=1.4e-20 Score=188.97 Aligned_cols=213 Identities=18% Similarity=0.200 Sum_probs=156.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcc-C---CCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CeEEEEecccc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTG-L---LSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISASSV 287 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~-~---~~~~~~vLL~GppGtGKT~lAraia~~l~-------~~~i~v~~s~l 287 (498)
+++|++++|+++.+.+.+ +..++.... . ..+..+++|+||||||||++|+++|+.+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998766 333333322 1 23456899999999999999999998772 37999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p- 366 (498)
.+.+.|.+...++.+++.+. +++|||||++.+.+.++. ......+++.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ---RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH
Confidence 99999988888888887764 389999999998643222 123356777888888732 3457777777543
Q ss_pred -C---CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh------c-CCcHHHHHHHHHHHHh
Q 010888 367 -W---ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT------E-GYSGSDIRLVSKEAAM 434 (498)
Q Consensus 367 -~---~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t------~-g~s~~dL~~L~~~A~~ 434 (498)
+ .++|++.+||...+.||.++.+++..|++.++.+.....+.+ +..+.... . --+++++++++..+..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 258999999999999999999999999999997754432222 23333331 1 2357888888888887
Q ss_pred HHHHHHHH
Q 010888 435 QPLRRLMV 442 (498)
Q Consensus 435 ~a~rrl~~ 442 (498)
....|+..
T Consensus 252 ~~~~r~~~ 259 (284)
T TIGR02880 252 RQANRLFC 259 (284)
T ss_pred HHHHHHhc
Confidence 77776654
No 43
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.7e-20 Score=200.73 Aligned_cols=242 Identities=21% Similarity=0.264 Sum_probs=196.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~ 328 (498)
.....+||+|+||||||++++++|+++|.+++.++|.++.....+..+..+...|..|+...|+|||+-++|.+..+..+
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999855443
Q ss_pred cchhhHHHHHHHHHHHHHh--hCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC
Q 010888 329 ARSEHEASRRLKTELLIQM--DGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE 406 (498)
Q Consensus 329 ~~~~~~~~~~i~~~Ll~~l--d~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~ 406 (498)
+ ...++...+-..+ +....+...++||++|+..+.+++.+++-|..++.++.|+.++|.+||+.++....+..
T Consensus 509 g-----ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~ 583 (953)
T KOG0736|consen 509 G-----EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ 583 (953)
T ss_pred c-----hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccch
Confidence 1 1233444333333 33344566799999999999999999999989999999999999999999999999988
Q ss_pred CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh--hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH--
Q 010888 407 SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL--EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA-- 482 (498)
Q Consensus 407 ~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l--e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~-- 482 (498)
++.+..++.++.||+.+++..++.+....+..+..+.. ...++........+...++++||.+++.+.+...++.+
T Consensus 584 ~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGA 663 (953)
T KOG0736|consen 584 DVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGA 663 (953)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999999999999999988665555554432 11223334444555677999999999998887766543
Q ss_pred --HHHHHHHHHhchh
Q 010888 483 --HRYEKFNADYGSE 495 (498)
Q Consensus 483 --~~~~~~~~~~g~~ 495 (498)
.+-..|.+..|-|
T Consensus 664 PKIPnV~WdDVGGLe 678 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLE 678 (953)
T ss_pred CCCCccchhcccCHH
Confidence 4567788877765
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.85 E-value=1.5e-20 Score=165.55 Aligned_cols=130 Identities=41% Similarity=0.660 Sum_probs=116.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchh
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.+..+|..+.... |+||||||+|.+.+..+ ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~--~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ--PSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS--TSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc--ccc
Confidence 689999999999999999999999999999999998888999999999999998887 99999999999998872 223
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHH-hcccceeEecC
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRILVPL 385 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~-~Rf~~~i~~~~ 385 (498)
......+.+.++..++.......+++||++||.++.++++++ +||+..+++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 445577889999999988777677999999999999999999 99999998874
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.4e-20 Score=181.86 Aligned_cols=186 Identities=31% Similarity=0.430 Sum_probs=149.4
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchh--hccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEe
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKY--FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNIS 283 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~--~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~ 283 (498)
--|++++-..++|++|..++...+...+. -..+....+-+|+|||||||||+|++++|+.+ ...++++|
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 34888888889999999887664433222 12235555779999999999999999999988 34679999
Q ss_pred ccccchhcccCcHHHHHHHHHHHHhc---CC--eEEEEcCccchhhhccccc--hhhHHHHHHHHHHHHHhhCCccCCCc
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARHH---AP--STIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDEL 356 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~~---~p--~VL~IDEiD~l~~~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~ 356 (498)
+..+.++|.+++.+.+..+|++.... .. -.++|||+++++..|.... .+....-+++++++.++|.+.. ..+
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~-~~N 297 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR-YPN 297 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-CCC
Confidence 99999999999999999999877642 22 3567899999998885432 2333345789999999998864 455
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
|++++|+|-.+.+|.++.+|-+-..++.+|+...+.+|++.++.+
T Consensus 298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987643
No 46
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.8e-19 Score=191.40 Aligned_cols=239 Identities=22% Similarity=0.259 Sum_probs=187.1
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEeccccchhccc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSVVSKWRG 293 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~s~l~~~~~G 293 (498)
.+++-...+|++..+....| .....++||+||+|||||.|+++++++.. +.+..++|+.+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 45566666777666544333 33446899999999999999999999884 56778999999887777
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc-cchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHH
Q 010888 294 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 372 (498)
Q Consensus 294 ~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~-~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~a 372 (498)
...+.+..+|..+.+++|+||++|++|.+++.... ........+++...+.+.+..+...+..+.+|++.+....+++.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 77888899999999999999999999999984332 22333344454444445555556666778999999999999998
Q ss_pred HHh--cccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 010888 373 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449 (498)
Q Consensus 373 l~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~ 449 (498)
+.+ +|+..+.++.|+..+|.+||+..+.+.... ...+++-++..|+||...|+..++.+|.+.+.++....
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~------ 631 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN------ 631 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc------
Confidence 887 899999999999999999999998776633 33457779999999999999999999999988542211
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 010888 450 VAPDDELPQIGPIRPEDVEIALKNTRPSAHL 480 (498)
Q Consensus 450 ~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~ 480 (498)
..+-+|.++|.++|+.+.|....
T Consensus 632 --------~~klltke~f~ksL~~F~P~aLR 654 (952)
T KOG0735|consen 632 --------GPKLLTKELFEKSLKDFVPLALR 654 (952)
T ss_pred --------CcccchHHHHHHHHHhcChHHhh
Confidence 11139999999999999998754
No 47
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.5e-19 Score=183.90 Aligned_cols=225 Identities=23% Similarity=0.339 Sum_probs=172.2
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCC-ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcc
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 292 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~-~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~ 292 (498)
+.+|+.++-..+.|+.+.+.+..+++...++.+...++ ++.|||||||||||+++.|+|+.++..++.++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 37799999999999999999999999999998875555 79999999999999999999999999999998876632
Q ss_pred cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch---hh--HHHHHHHHHHHHHhhCCccCC-CcEEEEEEeCCC
Q 010888 293 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS---EH--EASRRLKTELLIQMDGLTQSD-ELVFVLAATNLP 366 (498)
Q Consensus 293 G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~---~~--~~~~~i~~~Ll~~ld~~~~~~-~~viVIaaTn~p 366 (498)
... ++.++.... ..+||+|+|||.-+.-+..... .. ..++..++.||..+||+...- .-.+||.|||..
T Consensus 274 --n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 274 --DSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --cHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 222 666654433 3489999999987543221111 11 134578899999999995443 346688999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC--CcHHHHHH-HHHH--HHhHHHHH
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG--YSGSDIRL-VSKE--AAMQPLRR 439 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g--~s~~dL~~-L~~~--A~~~a~rr 439 (498)
+.|||||+| |++.++++..-+.+..+.++..++.... ...-.+++.+...+ .||+|+.. ++.. .+..++++
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999986533 11123444444333 69999976 4444 57788888
Q ss_pred HHHHhhchh
Q 010888 440 LMVLLEGRQ 448 (498)
Q Consensus 440 l~~~le~~~ 448 (498)
+.+.++...
T Consensus 427 Lv~~l~~~~ 435 (457)
T KOG0743|consen 427 LVEALESKK 435 (457)
T ss_pred HHHHHHhhh
Confidence 887776543
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.78 E-value=3e-18 Score=163.11 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=124.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.-++.+|+|++|+++++..++-.+...... ..+..++|||||||+|||+||+.||++++.++..+++..+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 345789999999999999988766442211 233468999999999999999999999999999988865421
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-----C----------CC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-----S----------DE 355 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-----~----------~~ 355 (498)
...+..++... ....|||||||+.+. +..++.|+..|+...- . -.
T Consensus 89 -----~~dl~~il~~l--~~~~ILFIDEIHRln-------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 89 -----AGDLAAILTNL--KEGDILFIDEIHRLN-------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp -----CHHHHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred -----HHHHHHHHHhc--CCCcEEEEechhhcc-------------HHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 12223333333 235799999999984 4467778888875421 1 12
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHH
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~ 430 (498)
+..+|+||++...|++.+++||.....+..++.++...|++..........+. ...++|.++.| +|+-...+++
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 46789999999999999999998888999999999999999887766655333 35667777776 5554333433
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.1e-17 Score=167.30 Aligned_cols=213 Identities=24% Similarity=0.301 Sum_probs=143.5
Q ss_pred CCCCCCccccCcHHHHH---HHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~---~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
-++.++++++|++.... -|.+.+. .....+++||||||||||++|+.||+..+.+|..+|+...
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~- 84 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS- 84 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-
Confidence 34788999999998653 3333332 1234689999999999999999999999999999987432
Q ss_pred hhcccCcHHHHHHHHHHHHhcC----CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe-
Q 010888 289 SKWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT- 363 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~----p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT- 363 (498)
+.+.++.+++.++... ..|||||||+.+- +..++.||-.++ + +.|++|++|
T Consensus 85 ------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-------------K~QQD~lLp~vE----~-G~iilIGATT 140 (436)
T COG2256 85 ------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-------------KAQQDALLPHVE----N-GTIILIGATT 140 (436)
T ss_pred ------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-------------hhhhhhhhhhhc----C-CeEEEEeccC
Confidence 4566888888885432 4899999998884 334566777765 2 335556554
Q ss_pred -CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC--CCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 364 -NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS--QTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 364 -n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~--~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
|+...++++++||+ .++.+.+.+.++...++...+.. ..+.. ...+ ..+....+-....+..|+
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i-----------~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL-----------DEEALDYLVRLSNGDARR 208 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC-----------CHHHHHHHHHhcCchHHH
Confidence 55578999999999 66888888888888888873322 22220 1111 123333344445555667
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCCh
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 478 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~ 478 (498)
.+|.+|.......... .++.+++++.+.+-.+..
T Consensus 209 aLN~LE~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~ 242 (436)
T COG2256 209 ALNLLELAALSAEPDE-----VLILELLEEILQRRSARF 242 (436)
T ss_pred HHHHHHHHHHhcCCCc-----ccCHHHHHHHHhhhhhcc
Confidence 7777776555443332 255888888887765543
No 50
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=6.3e-17 Score=182.11 Aligned_cols=176 Identities=22% Similarity=0.350 Sum_probs=135.3
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 275 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------- 275 (498)
+...+.....+-++++++|.++..+.+.+.+.. ....+++|+||||||||++|+++|+++
T Consensus 168 ~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~ 235 (731)
T TIGR02639 168 YTVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN 235 (731)
T ss_pred HhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 334444444567899999999999988876632 223689999999999999999999987
Q ss_pred --CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 276 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 276 --~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+..++.++++.+. .++.|+.+..++.+++.+....++||||||+|.+.+.........+ ..+.|...+.
T Consensus 236 l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~----~~~~L~~~l~--- 308 (731)
T TIGR02639 236 LKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD----ASNLLKPALS--- 308 (731)
T ss_pred hcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH----HHHHHHHHHh---
Confidence 7789999988887 4788999999999999998778899999999999875432221111 2233333332
Q ss_pred cCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 352 QSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 352 ~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
.+.+.+|++||.. ...|+++.|||. .++++.|+.+++..||+.....
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 2347788888863 357999999996 6999999999999999976644
No 51
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.74 E-value=1.4e-16 Score=163.46 Aligned_cols=219 Identities=18% Similarity=0.130 Sum_probs=150.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
.++.+|++++|+++.++.+...+..... ...++.++||+||||||||++|+++|++++..+..+++..+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 4567899999999999999987754211 124457899999999999999999999999988777665432
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc---------------cCCCc
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDEL 356 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~ 356 (498)
....+..++... ..+++|||||+|.+.... .+.++..++... ..-.+
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchHH-------------HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 112233333332 346899999999985421 122333333211 01123
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQ 435 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~A~~~ 435 (498)
+.+|++||++..+++++++||...+.++.|+.+++.++++..+.......+. .+..+++.+.|.. +.+..+++.++..
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 6788999999999999999998889999999999999999888766554332 3667888777644 6666666655543
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 436 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 436 a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+..+ ....|+.+++..++......
T Consensus 230 a~~~------------------~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 230 AQVK------------------GDGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHc------------------CCCCCCHHHHHHHHHHhCCC
Confidence 3221 01137777777777766544
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.74 E-value=7.3e-17 Score=175.06 Aligned_cols=255 Identities=19% Similarity=0.229 Sum_probs=158.5
Q ss_pred chhHHHHHHHHhhcCCCCCCcchHHHHHHH-----HHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhcc
Q 010888 172 LNGVLANVINERLQKPLLPNFDSAETRALA-----ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG 246 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~ 246 (498)
.+-+||+.++....+++.-.-+........ .++...+....++.+|++++|++..++.++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~----------- 82 (531)
T TIGR02902 14 IGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC----------- 82 (531)
T ss_pred HHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh-----------
Confidence 446777777765555544333332211111 1233445556778999999999999999986542
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEecccc-------chhcccCcHH------------
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV-------VSKWRGDSEK------------ 297 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~~s~l-------~~~~~G~~~~------------ 297 (498)
...+.++||+||||||||++|+++++.+ +.+|+.++|+.. .....|....
T Consensus 83 -~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~ 161 (531)
T TIGR02902 83 -GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIA 161 (531)
T ss_pred -CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccC
Confidence 2334689999999999999999998753 368999998632 1111110000
Q ss_pred ----HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc----------------------
Q 010888 298 ----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------------- 351 (498)
Q Consensus 298 ----~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------------- 351 (498)
.....+. ....++|||||++.|.+. .++.|+..++.-.
T Consensus 162 g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (531)
T TIGR02902 162 GIPQPKPGAVT---RAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDI 225 (531)
T ss_pred CcccccCchhh---ccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhh
Confidence 0001122 223479999999998654 3444554443210
Q ss_pred ----cCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHH
Q 010888 352 ----QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIR 426 (498)
Q Consensus 352 ----~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~ 426 (498)
.+....+|++||+.|+.+++++++|+ ..+.++.++.++..+|++..+++.....+. .++.++..+ .+++++.
T Consensus 226 ~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~ 302 (531)
T TIGR02902 226 FQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAV 302 (531)
T ss_pred cccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHH
Confidence 01122445566788999999999999 568899999999999999988765543222 233344333 2566776
Q ss_pred HHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 427 LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 427 ~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
++++.|+..+..+ . ...|+.+|++.++...+
T Consensus 303 nll~~Aa~~A~~~------~------------~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 303 NIVQLAAGIALGE------G------------RKRILAEDIEWVAENGN 333 (531)
T ss_pred HHHHHHHHHHhhC------C------------CcEEcHHHHHHHhCCcc
Confidence 6666665433221 1 02399999999997543
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.74 E-value=1.3e-16 Score=161.72 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=132.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCc
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 295 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~ 295 (498)
+|++++|++++++.|..++..... ...++.+++|+||||||||++|+++|++++.++..+++.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 689999999999999988754321 1233468999999999999999999999998877666543221
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc---------------cCCCcEEEE
Q 010888 296 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL 360 (498)
Q Consensus 296 ~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~viVI 360 (498)
...+...+... ..+.+|||||++.+.... .+.|+..++... ....++.+|
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 11122222222 346899999999986431 222333332111 112347788
Q ss_pred EEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010888 361 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAM 434 (498)
Q Consensus 361 aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~ 434 (498)
++||.+..+++++++||...+.++.|+.++..++++..+.......+ ..++.+++.+.|.. +.+..++..++.
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 99999999999999999888899999999999999988765444332 33667888877754 555666665553
No 54
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.74 E-value=4.1e-19 Score=183.55 Aligned_cols=220 Identities=20% Similarity=0.194 Sum_probs=157.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+...+..|||.+.++.++.+.+.. ..+...+|||.|++||||..+||+|++.+ +.||+++||+.+.
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEV----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHH----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 3466788999999999999998855 34566899999999999999999999988 6899999997664
Q ss_pred ---------hhcccCcHHHH---HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCc
Q 010888 289 ---------SKWRGDSEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 356 (498)
Q Consensus 289 ---------~~~~G~~~~~l---~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 356 (498)
+...|.....+ ++.|+.|.+ +.||+|||..|+...|.+.+ +.+++.-++.+.+-.....+
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~lQaKLL-----RvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLALQAKLL-----RVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHHHHHHHH-----HHHhhcceeecCCCceeEEE
Confidence 33333333322 234555554 67999999999877554433 66666666666666555667
Q ss_pred EEEEEEeCCCCCCCHHHHh-cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHHHHHHHH
Q 010888 357 VFVLAATNLPWELDAAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDIRLVSKE 431 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~-Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL~~L~~~ 431 (498)
|.|||+||+ +|..+++. +|...+|+++....-....|+.+-.+.+.....-++.+..+ ...++++.++.+.+.
T Consensus 359 VRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 359 VRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 999999999 88888887 78777766554443333333333322222222223333332 335899999999999
Q ss_pred HHhHHHHHHHHHhhchhccC
Q 010888 432 AAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 432 A~~~a~rrl~~~le~~~~~~ 451 (498)
.|++++|++.+.++++...+
T Consensus 437 ~wPGNVRELen~veRavlla 456 (550)
T COG3604 437 EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 99999999999999877644
No 55
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.74 E-value=5.3e-19 Score=185.13 Aligned_cols=214 Identities=20% Similarity=0.237 Sum_probs=147.9
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh-
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK- 290 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~- 290 (498)
....+++|.+.+++++.+.+.. ......+|||+|++||||..+||+|++.+ +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4688999999999999998744 45667899999999999999999999988 569999999766432
Q ss_pred --------cccCcHHHH---HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 291 --------WRGDSEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 291 --------~~G~~~~~l---~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
-.|...... ...|+.|.+ ++||||||..|+...|.+. .+.+++.-+..+.+.....-+|.|
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~~Q~kL-----LRvLqe~~~~rvG~~~~i~vdvRi 279 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLELQVKL-----LRVLQEREFERVGGNKPIKVDVRI 279 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHHHHHHH-----HHHHHcCeeEecCCCcccceeeEE
Confidence 222222222 234555554 7899999999976533221 233333333344444444557999
Q ss_pred EEEeCCCCCCCHHHHh-ccccee-------EecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHHHH
Q 010888 360 LAATNLPWELDAAMLR-RLEKRI-------LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDIRL 427 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~-Rf~~~i-------~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL~~ 427 (498)
|++||. +|...+.. +|...+ .+..|...+|.+-+ +.....-+..+++. ..++++..+..
T Consensus 280 IaaT~~--dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDI-------p~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 280 IAATNR--DLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDI-------PLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred EeecCc--CHHHHHHcCCcHHHHHhhhccceecCCcccccchhH-------HHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 999998 66655554 555444 45556665655432 22222233444443 35799999999
Q ss_pred HHHHHHhHHHHHHHHHhhchhccCCCCC
Q 010888 428 VSKEAAMQPLRRLMVLLEGRQEVAPDDE 455 (498)
Q Consensus 428 L~~~A~~~a~rrl~~~le~~~~~~~~~~ 455 (498)
|..+.|++|+|++.|.+++...+.+.+.
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~~~~~ 378 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILSEGPE 378 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999998877666554
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=4.2e-16 Score=176.40 Aligned_cols=232 Identities=21% Similarity=0.213 Sum_probs=151.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc---------h
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------S 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~---------~ 289 (498)
+++|++.+++.+.+++....... .....+++|+||||||||++|+++|+.++.+++.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 58899999999998776543211 12234799999999999999999999999999999875432 2
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC-----Cc-------cCCCcE
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-----LT-------QSDELV 357 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-----~~-------~~~~~v 357 (498)
.|.|.....+...+..+....| ||+|||+|.+.+..+.. ..+.|+..++. +. ....++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 4566666667777777765554 89999999998643221 12345555542 11 112468
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcC-----CCCCC------CCCCHHHHHHH-hcCCcHHHH
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP-----SQTGE------ESLPYDLLVER-TEGYSGSDI 425 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~-----~~~~~------~~~~l~~La~~-t~g~s~~dL 425 (498)
++|+|||.++.+++++++|| ..++++.|+.+++..|++.++. ...+. .+..+..+++. +..+..++|
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 89999999999999999999 4789999999999999987652 11221 11224444442 333445666
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhc
Q 010888 426 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 473 (498)
Q Consensus 426 ~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~ 473 (498)
+..+........+++... .. ..... .....++.+++++.|..
T Consensus 544 ~r~i~~~~~~~~~~~~~~--~~--~~~~~--~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 544 ERQIEKICRKAAVKLVEQ--GE--KKKSE--AESVVITPDNLKKYLGK 585 (775)
T ss_pred HHHHHHHHHHHHHHHHhc--cC--cccCC--cccccCCHHHHHHhcCc
Confidence 666665554444433210 00 00000 11134889988888764
No 57
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.71 E-value=7.8e-18 Score=182.46 Aligned_cols=322 Identities=19% Similarity=0.153 Sum_probs=186.5
Q ss_pred HHHHHHhhcccccccCCCCCccccchhhHHHHHhhhhhhc-------cccCcCCCCCCCCCCCCCCCCCCC-CcccCCCh
Q 010888 83 AISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKK-------IKEPEKGEITERPVSDGSSLNSNG-HVQNTSDM 154 (498)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~l 154 (498)
+..||+++++|++++|.++.+.| +|..+.+.||... +.++.++.........+....... ...++...
T Consensus 82 L~aIL~sm~eGVi~vD~~G~I~~----iN~aA~~Llg~~~eel~Gk~i~eli~~~~l~~~le~~~~~~~~~~v~~~g~~~ 157 (520)
T PRK10820 82 LSALLEALPEPVLSIDMKGKVEL----ANPASCQLFGQSEEKLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQDF 157 (520)
T ss_pred HHHHHHhCCCcEEEECCCCeeeH----hHHHHHHHHCcCHHHHCCCcHHHHcCcchHHHHHHcCCCccceEEEEECCEEE
Confidence 67899999999999999999999 9999999999743 233322222222222222200000 00111111
Q ss_pred hhHHHHhh--hhcCCCcccchhHHHHHHHHhhcCCCCCCcchHHHHHHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHH
Q 010888 155 AVYEQYRT--QFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE 232 (498)
Q Consensus 155 ~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~ 232 (498)
-+...+.. +..+.. ...+..+ +..+...+ ...+. -........|++++|.+...+++.+
T Consensus 158 ~v~~~PI~~~d~~g~~-~~~GaVi-----------vlrd~~~l-----~~~~~--~~~~~~~~~f~~~ig~s~~~~~~~~ 218 (520)
T PRK10820 158 LMEITPVYLQDENDQH-VLVGAVV-----------MLRSTARM-----GRQLQ--NLAVNDDSAFSQIVAVSPKMRQVVE 218 (520)
T ss_pred EEEEEeeeecCCCCce-eEEEEEE-----------EeccHHHH-----HHHHH--hhhccccccccceeECCHHHHHHHH
Confidence 11000000 000000 0001000 00110000 00000 0123456889999999998888887
Q ss_pred HHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-----ccCcH-------H
Q 010888 233 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-----RGDSE-------K 297 (498)
Q Consensus 233 ~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~-----~G~~~-------~ 297 (498)
.+... .....+|||+|++||||+++|++++..+ +.||+.++|+.+.... .|... .
T Consensus 219 ~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~ 288 (520)
T PRK10820 219 QARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALE 288 (520)
T ss_pred HHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCccc
Confidence 76432 2334679999999999999999998876 4799999998774321 11110 1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcEEEEEEeCCC---
Q 010888 298 LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP--- 366 (498)
Q Consensus 298 ~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIaaTn~p--- 366 (498)
....+|+.+. .++|||||+|.|.+. ++..|+..++.-. ....++.||++|+.+
T Consensus 289 ~~~g~~e~a~---~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 289 GKKGFFEQAN---GGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred CCCChhhhcC---CCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 1122344433 478999999999654 4445555554311 112357788888764
Q ss_pred ----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHHHHHHHHHHhHHHH
Q 010888 367 ----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDIRLVSKEAAMQPLR 438 (498)
Q Consensus 367 ----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL~~L~~~A~~~a~r 438 (498)
..+.+.+..|+.. +.+.+|...+|.+-+..++.. -+..++.+ ..++++..+..|.++.|++++|
T Consensus 353 l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~-------fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvr 424 (520)
T PRK10820 353 LVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTEL-------FVARFADEQGVPRPKLAADLNTVLTRYGWPGNVR 424 (520)
T ss_pred HHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHH-------HHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHH
Confidence 1255667777743 778888888877533322211 11222322 2368899999999999999999
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHH
Q 010888 439 RLMVLLEGRQEVAPDDELPQIGPIRPEDV 467 (498)
Q Consensus 439 rl~~~le~~~~~~~~~~~~~~~~It~eD~ 467 (498)
++.+.++.+...+.+.. |+.+|+
T Consensus 425 eL~nvl~~a~~~~~~~~------i~~~~~ 447 (520)
T PRK10820 425 QLKNAIYRALTQLEGYE------LRPQDI 447 (520)
T ss_pred HHHHHHHHHHHhCCCCc------ccHHHc
Confidence 99999988766544433 666664
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.5e-16 Score=163.55 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=123.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+..++.+|++++|++.+++.|+..+... ..++.+||+||||||||++|+.+|+.+++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 3567889999999999999999887431 233569999999999999999999998652
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++.- .....++.+.+.+. .....|++|||+|.|. ....+
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-------------~~A~N 139 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-------------DQSFN 139 (484)
T ss_pred cHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-------------HHHHH
Confidence 333333211 11223444443332 3345799999999884 33567
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..++. ....+++|.+|+.+..+.+++++|| ..+.|+.++.++-...++..+.......+ ..+..+++...|
T Consensus 140 ALLKtLEE---Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 140 ALLKTLEE---PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHHHhhc---CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888863 3455788888888999999999999 55888888888888888888765443322 223444444443
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3.6e-16 Score=168.77 Aligned_cols=188 Identities=19% Similarity=0.240 Sum_probs=133.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
+++++.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.+++.+++
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 456789999999999999999998754 233467899999999999999999999875
Q ss_pred -----------------eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHH
Q 010888 278 -----------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEAS 336 (498)
Q Consensus 278 -----------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 336 (498)
.+++++.+. ...-..++.+.+.+. .....|++|||+|.|.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------- 137 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------- 137 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------
Confidence 223333321 012233455544432 3345799999999884
Q ss_pred HHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHH
Q 010888 337 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVE 415 (498)
Q Consensus 337 ~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~ 415 (498)
....+.||+.|+. ....+++|.+||.+..+.+.++||| ..+.|+.++.++....|+.++.......+. .++.|++
T Consensus 138 ~~AaNALLKTLEE---PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 138 NHAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHHhhcc---CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2356778888773 3445778888999999999999999 668999999999998888877655444332 2455666
Q ss_pred HhcCCcHHHHHHHHHHH
Q 010888 416 RTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 416 ~t~g~s~~dL~~L~~~A 432 (498)
.+.| +.++...++..+
T Consensus 214 ~A~G-s~RdALsLLdQa 229 (700)
T PRK12323 214 AAQG-SMRDALSLTDQA 229 (700)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 6555 445555555443
No 60
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=1.1e-15 Score=148.37 Aligned_cols=182 Identities=19% Similarity=0.182 Sum_probs=137.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.-++..|++++|++++|++|.-.+.....+ ....-++||+||||.||||||+.||+++|..+-..++..+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK- 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK- 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC-
Confidence 445788999999999999999877654332 233468999999999999999999999999998888776632
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc---------------CCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDE 355 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---------------~~~ 355 (498)
..-+-.++... ...+|||||||+.+.+. +.+.|+..|+.+.- .-.
T Consensus 91 -----~gDlaaiLt~L--e~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 -----PGDLAAILTNL--EEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred -----hhhHHHHHhcC--CcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 12233333332 23479999999998643 44556666664321 123
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 420 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~ 420 (498)
+.-+|++|.+...|...+++||.....+..++.++...|+...........+. ...++|+++.|-
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 47789999999999999999999999999999999999999988766665443 466788888763
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=9e-16 Score=167.65 Aligned_cols=189 Identities=19% Similarity=0.194 Sum_probs=133.5
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++++.+++.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456789999999999999999988743 1234578999999999999999999988642
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+++++.++- ..-..++.+++.+.. ....|+||||+|.|.. ...+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A~N 137 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HAFN 137 (830)
T ss_pred HHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HHHH
Confidence 333333211 122334555554432 3457999999998842 3456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|++.|+. ....+.+|.+||.++.+.+.+++|| ..+.|..++.++-...|+.++....+..+ ..+..|++...|-
T Consensus 138 ALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 138 AMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHHh---cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 78888773 2345778889999999999999999 66899999999999999988876655433 3355667766663
Q ss_pred cHHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEAA 433 (498)
Q Consensus 421 s~~dL~~L~~~A~ 433 (498)
.++...++..++
T Consensus 214 -mRdALsLLdQAi 225 (830)
T PRK07003 214 -MRDALSLTDQAI 225 (830)
T ss_pred -HHHHHHHHHHHH
Confidence 344444444333
No 62
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.67 E-value=8.9e-16 Score=171.59 Aligned_cols=237 Identities=22% Similarity=0.290 Sum_probs=162.0
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 275 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------- 275 (498)
.+.+++......-.++.++|.++..+.+.+.+.. ....++||+||||||||++|+++|...
T Consensus 171 ~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~ 238 (758)
T PRK11034 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_pred HHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3444555445566788999999999999987643 223688999999999999999999875
Q ss_pred ---CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 276 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 276 ---~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
+..++.++.+.+. .++.|+.+..++.++..+....++||||||+|.+.+.........+ +.+.|...+.
T Consensus 239 ~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d----~~nlLkp~L~-- 312 (758)
T PRK11034 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLLS-- 312 (758)
T ss_pred hhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH----HHHHHHHHHh--
Confidence 4566676666555 4578889999999999888878899999999999876532222222 2222222222
Q ss_pred ccCCCcEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHH-----HHHHhc--
Q 010888 351 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERTE-- 418 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~-----La~~t~-- 418 (498)
.+.+.+|++|+.++ ..|+++.|||. .+.++.|+.+++..||+.+........++.+.+ .+..+.
T Consensus 313 ---~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 313 ---SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred ---CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 23488899998763 57999999995 799999999999999998876655554444433 222222
Q ss_pred ---CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 419 ---GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 419 ---g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
.+.|...-.++++|+... ++... . .....++.+|+.+.+....
T Consensus 389 i~~r~lPdKaidlldea~a~~--~~~~~----------~--~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARA--RLMPV----------S--KRKKTVNVADIESVVARIA 434 (758)
T ss_pred ccCccChHHHHHHHHHHHHhh--ccCcc----------c--ccccccChhhHHHHHHHHh
Confidence 344556666777665431 11100 0 0012388888888887754
No 63
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3e-15 Score=161.75 Aligned_cols=222 Identities=41% Similarity=0.595 Sum_probs=192.2
Q ss_pred cCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEc
Q 010888 239 KYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 317 (498)
Q Consensus 239 ~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~ID 317 (498)
.++..+... ..++++++++||||||||+++++++++ +..+..++..+...++.|.++...+..+..+....|+++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 344444433 678899999999999999999999999 666688899999999999999999999999999999999999
Q ss_pred CccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHH
Q 010888 318 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 318 EiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL 395 (498)
|+|.+.+.+.. ......+.+...++..+++.. ... +++++.||.+..+++++++ ||+..+.+..|+...+.+++
T Consensus 84 ~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 84 EIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred hhhhcccCccc--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999998876 344556788999999999998 666 8899999999999999998 99999999999999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 396 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 396 ~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
...........+.++..++..+.|++++++..+++++...++++.. . .......++.+|+.++++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------~------~~~~~~~~~~~~~~~~l~~~~ 227 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------D------LVGEYIGVTEDDFEEALKKVL 227 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------c------cCcccccccHHHHHHHHHhcC
Confidence 9998888877788999999999999999999999999998888753 0 011122389999999999988
Q ss_pred CC
Q 010888 476 PS 477 (498)
Q Consensus 476 ps 477 (498)
|+
T Consensus 228 ~~ 229 (494)
T COG0464 228 PS 229 (494)
T ss_pred cc
Confidence 75
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.1e-15 Score=160.94 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=122.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
...++.+|++++|++.+++.|...+... ..++++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 4567889999999999999988876431 23467999999999999999999998864
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++.++++.- ..-..++.+.+.+.. ....||+|||+|.+.. ..++
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-------------~a~~ 135 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-------------EAFN 135 (472)
T ss_pred HHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-------------HHHH
Confidence 3445544321 112334444444432 2346999999998842 2356
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.|+..++. ....+++|++|+.+..+++++++|+ ..+.|..++.++...+++..+....... +..++.|+..+.
T Consensus 136 ~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 136 ALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 67777763 2334666767777888999999999 5799999999999999988876544332 223444555444
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=4.6e-15 Score=156.77 Aligned_cols=152 Identities=24% Similarity=0.372 Sum_probs=111.7
Q ss_pred CCCCCCccccCcHHHHHH---HHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~---L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.++.++++++|++.+... +.+.+.. ....+++|+||||||||++|+++++.++.+++.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 456889999999998666 7776632 123589999999999999999999999999999987643
Q ss_pred hhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe-
Q 010888 289 SKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT- 363 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT- 363 (498)
....++.+++.+. .....||||||+|.+... .++.|+..++. ..+++|++|
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~-----~~iilI~att 128 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED-----GTITLIGATT 128 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc-----CcEEEEEeCC
Confidence 1233444554443 235689999999987432 34556666652 235555554
Q ss_pred -CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 364 -NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 364 -n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
|....+++++++|| ..+.++.++.++...+++..+..
T Consensus 129 ~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 129 ENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 33457899999999 67899999999999999987654
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.1e-15 Score=153.84 Aligned_cols=186 Identities=16% Similarity=0.183 Sum_probs=126.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
...++.+|++|+|++.+++.++..+.. ...++.+||+||||+|||++|+++|+.+.+.
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 356788999999999999999987743 1234678999999999999999999998642
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++. ...-..++.+.+.+.. ....|++|||+|.+.. ...+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a~n 137 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HSFN 137 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HHHH
Confidence 22222211 0122335555554432 2346999999998842 2445
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++. ....+.+|.+|+.++.+.+++++|+ ..+.+++|+.++...+++..++......+ ..+..++..+.|
T Consensus 138 aLLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G- 212 (363)
T PRK14961 138 ALLKTLEE---PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG- 212 (363)
T ss_pred HHHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 67777763 2334666777777888999999999 56899999999999999988766543322 234555655554
Q ss_pred cHHHHHHHHH
Q 010888 421 SGSDIRLVSK 430 (498)
Q Consensus 421 s~~dL~~L~~ 430 (498)
+.+++..++.
T Consensus 213 ~~R~al~~l~ 222 (363)
T PRK14961 213 SMRDALNLLE 222 (363)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 67
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.1e-15 Score=161.14 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=128.5
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|+..+.. ...++.+||+||||||||++|+.+|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 456789999999999999999998743 1234578999999999999999999998642
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+++++++.- ..-..++.+.+.+. .....|++|||+|.|.. ...+
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-------------~a~n 137 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-------------HSFN 137 (509)
T ss_pred HHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-------------HHHH
Confidence 444444321 12233455554433 23346999999998853 2456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|+.++.++-...++..+.......+ ..+..+++.+.|
T Consensus 138 aLLk~LEep---p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G- 212 (509)
T PRK14958 138 ALLKTLEEP---PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG- 212 (509)
T ss_pred HHHHHHhcc---CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788888743 334667777788888888999999 56888888888888888877766554422 234445555443
Q ss_pred cHHHHHHHHH
Q 010888 421 SGSDIRLVSK 430 (498)
Q Consensus 421 s~~dL~~L~~ 430 (498)
+.+++..++.
T Consensus 213 slR~al~lLd 222 (509)
T PRK14958 213 SVRDALSLLD 222 (509)
T ss_pred cHHHHHHHHH
Confidence 4444444443
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.9e-15 Score=160.43 Aligned_cols=186 Identities=18% Similarity=0.188 Sum_probs=130.8
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
+..++.+|++|+|++.+++.|...+.. ...++.+||+||+|||||++|+++|+.+++
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 456789999999999999999988753 233468899999999999999999999865
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++.+++++- ..-..++.+...+. ..+..|++|||+|.|.. ...+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-------------~A~N 136 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-------------HSFN 136 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-------------HHHH
Confidence 2344444321 12233455544432 23457999999998842 2456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+.......+ ..+..+++.+.|
T Consensus 137 ALLKtLEEP---P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 137 ALLKTLEEP---PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHHhcC---CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788887732 334667777888888889999999 66899999999999999888876655433 235556666554
Q ss_pred cHHHHHHHHH
Q 010888 421 SGSDIRLVSK 430 (498)
Q Consensus 421 s~~dL~~L~~ 430 (498)
+.+++.+++.
T Consensus 212 dLRdALnLLD 221 (702)
T PRK14960 212 SLRDALSLTD 221 (702)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=99.64 E-value=1.1e-14 Score=148.91 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=120.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~ 284 (498)
...++.+|++++|++++++.|+..+.. ....++||+||||||||++|+++|+++. ..++.+++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 356788999999999999999887643 1124699999999999999999999972 34666776
Q ss_pred cccchhcccCcHHHHHHHHHHH-H------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcE
Q 010888 285 SSVVSKWRGDSEKLIKVLFELA-R------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 357 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a-~------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v 357 (498)
++..+. ..++...... . ...+.|++|||+|.+... .++.|+..++... ...
T Consensus 73 sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~---~~t 130 (319)
T PLN03025 73 SDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIYS---NTT 130 (319)
T ss_pred cccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhccc---CCc
Confidence 654221 1233322221 1 123579999999998532 3455666665332 224
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.+|.++|.+..+.+++++|+ ..+.|+.|+.++....++..++...... +..+..++....
T Consensus 131 ~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 131 RFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD 191 (319)
T ss_pred eEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 46678888888999999999 5689999999999999998886655442 223444555444
No 70
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=2.1e-14 Score=157.20 Aligned_cols=187 Identities=22% Similarity=0.253 Sum_probs=130.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|...+.. ...++.+||+||+|+|||++|+.+|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 346788999999999999999988743 1234568999999999999999999998652
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++.- ..-..++.+.+.+. .....|++|||+|.|. ....+
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-------------~~a~N 137 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFN 137 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-------------HHHHH
Confidence 233333210 11223444444332 2345799999999884 34677
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|++.++. ....+.+|.+|+.+..|.+.+++|| ..+.|+.++.++-...|+.++.......+ ..+..+++.+.|
T Consensus 138 ALLKtLEE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G- 212 (647)
T PRK07994 138 ALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG- 212 (647)
T ss_pred HHHHHHHc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888873 3345667777888889999999998 77999999999999999888765544333 335556666665
Q ss_pred cHHHHHHHHHH
Q 010888 421 SGSDIRLVSKE 431 (498)
Q Consensus 421 s~~dL~~L~~~ 431 (498)
+.++...++..
T Consensus 213 s~R~Al~lldq 223 (647)
T PRK07994 213 SMRDALSLTDQ 223 (647)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.5e-14 Score=160.97 Aligned_cols=189 Identities=20% Similarity=0.218 Sum_probs=130.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---------- 279 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~---------- 279 (498)
++.++.+|++|+|++.+++.|+..+... +.++.+||+||||||||++|+++|+.+++.-
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 3567899999999999999999887431 2345679999999999999999999996531
Q ss_pred --------------EEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 280 --------------FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 280 --------------i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+.+++++ ...-..++.+.+.+. .....|+||||+|.|. ...++
T Consensus 77 ~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eAqN 137 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSSFN 137 (944)
T ss_pred hHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHHHH
Confidence 1121110 011223444444333 2345799999999984 44677
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..|+. ....+++|.+|+.+..+.+.+++|| ..+.|+.++.++-...|+.++.......+ ..+..|++.+.|
T Consensus 138 ALLKtLEE---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G- 212 (944)
T PRK14949 138 ALLKTLEE---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG- 212 (944)
T ss_pred HHHHHHhc---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888873 3344667777888888999999999 66899999999999888888765443322 235556666655
Q ss_pred cHHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEAA 433 (498)
Q Consensus 421 s~~dL~~L~~~A~ 433 (498)
+.+++..++..+.
T Consensus 213 d~R~ALnLLdQal 225 (944)
T PRK14949 213 SMRDALSLTDQAI 225 (944)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555554433
No 72
>PRK04195 replication factor C large subunit; Provisional
Probab=99.62 E-value=1e-14 Score=157.08 Aligned_cols=188 Identities=23% Similarity=0.281 Sum_probs=132.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
...++.++++|+|++.+++.+.+++..... ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 356778899999999999999998865331 233679999999999999999999999999999999887532
Q ss_pred hcccCcHHHHHHHHHHHHh------cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 290 KWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
...+..+...+.. ..+.+|+|||+|.+....+ +.....++..++. .. ..+|+++
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~---~~--~~iIli~ 137 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK---AK--QPIILTA 137 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc---CC--CCEEEec
Confidence 1223333332221 2467999999999864211 1233455555552 12 2356688
Q ss_pred CCCCCCCH-HHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHH
Q 010888 364 NLPWELDA-AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 364 n~p~~Ld~-al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
|.+..+.+ .+++|+ ..+.|+.|+.++...+++..+.......+ ..++.|++.+.| |++.+++
T Consensus 138 n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain 201 (482)
T PRK04195 138 NDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIN 201 (482)
T ss_pred cCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 88888887 666677 67999999999999999998866655432 345666666554 5554444
No 73
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.62 E-value=2.8e-14 Score=156.62 Aligned_cols=225 Identities=21% Similarity=0.231 Sum_probs=143.5
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI 282 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v 282 (498)
+.+.-+.|+|.++..++|...+...+.. ..+...++|+|+||||||++++.+.+++ ...+++|
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 4455588999999999999988654421 2233345799999999999999998876 2567899
Q ss_pred eccccchhc----------------cc-CcHHHHHHHHHHHH--hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHH
Q 010888 283 SASSVVSKW----------------RG-DSEKLIKVLFELAR--HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 343 (498)
Q Consensus 283 ~~s~l~~~~----------------~G-~~~~~l~~~f~~a~--~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~L 343 (498)
||..+.... .| .....+..+|.... .....||+|||+|.|.... . ..|
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------Q---DVL 889 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------Q---KVL 889 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------H---HHH
Confidence 996543211 01 12334555665542 2335699999999996431 1 224
Q ss_pred HHHhhCCccCCCcEEEEEEeCC---CCCCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC
Q 010888 344 LIQMDGLTQSDELVFVLAATNL---PWELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG 419 (498)
Q Consensus 344 l~~ld~~~~~~~~viVIaaTn~---p~~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g 419 (498)
+..++........+.||+++|. +..|++++++||.. .+.|++++.+++..||+.++......
T Consensus 890 YnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gV-------------- 955 (1164)
T PTZ00112 890 FTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEI-------------- 955 (1164)
T ss_pred HHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCC--------------
Confidence 4444433334456888999986 45678899998864 48899999999999999998653111
Q ss_pred CcHHHHHHHHHHHH--hHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 420 YSGSDIRLVSKEAA--MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 420 ~s~~dL~~L~~~A~--~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+....|..+++.++ .+.+|+.+..++.+.++..+ ..|+.+|+.+|+..+..+
T Consensus 956 LdDdAIELIArkVAq~SGDARKALDILRrAgEikeg------skVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 956 IDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG------QKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC------CccCHHHHHHHHHHHHhh
Confidence 22222222222222 34555555555555443221 138899999888776443
No 74
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.62 E-value=2.3e-14 Score=146.78 Aligned_cols=179 Identities=21% Similarity=0.258 Sum_probs=118.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~ 284 (498)
.+..+.+|++++|++++++.|.+.+... ...+++|+||||||||++|+++++++. .+++.+++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 3456788999999999999999877431 123799999999999999999999883 35778888
Q ss_pred cccchhcc-------------cC-------cHHHHHHHHHHHHh-----cCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 285 SSVVSKWR-------------GD-------SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 285 s~l~~~~~-------------G~-------~~~~l~~~f~~a~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
+++..... +. ....++.+...... ..+.+|+|||+|.+... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------~ 141 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------A 141 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-------------H
Confidence 76532210 00 01223333322222 23469999999987432 2
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHh
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERT 417 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t 417 (498)
.+.|...++.... . ..+|.+++.+..+.+.+++|+ ..+.+.+|+.++...+++..+....... +..++.+++.+
T Consensus 142 ~~~L~~~le~~~~--~-~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 142 QQALRRIMEQYSR--T-CRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHHHHHhccC--C-CeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3345555553322 2 334556666667778899998 5689999999999999998876655442 22344455544
No 75
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.62 E-value=2e-14 Score=151.58 Aligned_cols=197 Identities=17% Similarity=0.292 Sum_probs=125.6
Q ss_pred CCCCCCcc-ccCcHH--HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWES-IKGLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~-IvG~~~--~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.+..+|++ ++|.++ +...+.+....+ .....+++||||||||||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 45678999 556444 334444433221 1234579999999999999999999987 57789999
Q ss_pred ccccchhcccCcHH-HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~~-~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+.++...+...... ....+.+..+ .+.+|+|||+|.+.+.. .....++..++.....+. .+||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~~~~~~~-~iiits 239 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE-----------RTQEEFFHTFNALHENGK-QIVLTS 239 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHHCCC-CEEEec
Confidence 88776543322111 1112222222 35799999999886431 123344555544322333 345555
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
+..|.. +++.+++||. ..+.++.|+.++|..|++..+.......+ ..++.+|++..+ +.++|..++....
T Consensus 240 ~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 240 DRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred CCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 555543 6688999996 46899999999999999999877655433 345667776664 5667776665543
No 76
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.62 E-value=2e-14 Score=153.55 Aligned_cols=196 Identities=15% Similarity=0.274 Sum_probs=125.3
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~Iv-G~~~--~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.+..+|++++ |..+ +...+++....+ ....++++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4667899854 5333 555555544321 1233579999999999999999999987 56788999
Q ss_pred ccccchhcccCcHHH-HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~-l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+.++...+....... ...+.+.. ..+.+|+|||+|.+..+. ..+..++..++.+...+. .+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~l~~~~~-~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY--RSVDVLLIDDIQFLAGKE-----------RTQEEFFHTFNALHEAGK-QIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH--hcCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHHCCC-cEEEEC
Confidence 988765544322211 11222222 246899999999885431 123345555544433333 345555
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A 432 (498)
+..|.. +++++++||. ..+.+..|+.++|..|++..+.......+ ..++.|+..+.| +.++|..++...
T Consensus 252 ~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 252 DRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred CCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 555544 7789999995 46889999999999999999876554422 335556666554 555665555544
No 77
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=1.5e-14 Score=150.99 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=127.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------------
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 278 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------------- 278 (498)
.|++|+|++.+++.|+..+.....+...+. ...++++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999876543322221 2346789999999999999999999987443
Q ss_pred ------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 279 ------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 279 ------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
+..+.+.. ....-..++.+++.+.. ....|++|||+|.|.. ...+.|+..++
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-------------~aanaLLk~LE 142 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-------------RAANALLKAVE 142 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-------------HHHHHHHHHhh
Confidence 11121110 11123346677766653 2346999999999843 24567888887
Q ss_pred CCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHH
Q 010888 349 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 428 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L 428 (498)
.. ... +++|.+|+.++.+.+.++||+ ..+.|+.|+.++...+|.... ... ......++..+.|..+..+..+
T Consensus 143 ep--~~~-~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EP--PPR-TVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cC--CCC-CeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 32 233 445555655889999999999 679999999999888886432 122 2335567788888777666554
Q ss_pred HH
Q 010888 429 SK 430 (498)
Q Consensus 429 ~~ 430 (498)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 44
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.6e-14 Score=153.96 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=133.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
+..++.+|++++|++.+++.|+..+.. ...++++||+||+|+|||++|+.+|+.+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 356789999999999999999887643 234578999999999999999999997632
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++++++++- ..-..++.+.+.+.. ..+.|++|||+|.|. ....+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-------------~~A~N 134 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-------------NSAFN 134 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------HHHHH
Confidence 3455555422 123446666665542 235699999998874 23567
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+.......+ ..+..+++.+.|
T Consensus 135 aLLK~LEeP---p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 135 ALLKTLEEP---APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHHhCC---CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788888743 334667777788888999999999 56899999999999999988876655433 335556666654
Q ss_pred cHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEA 432 (498)
Q Consensus 421 s~~dL~~L~~~A 432 (498)
+.+++..+++.+
T Consensus 210 slR~alslLdql 221 (491)
T PRK14964 210 SMRNALFLLEQA 221 (491)
T ss_pred CHHHHHHHHHHH
Confidence 555555544443
No 79
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=9.7e-15 Score=166.03 Aligned_cols=193 Identities=21% Similarity=0.319 Sum_probs=136.7
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 010888 205 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 275 (498)
Q Consensus 205 ~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l--------- 275 (498)
..++.....+-++++++|++...+.+.+.+.. ....+++|+||||||||++|+.+|+.+
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l 241 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPAL 241 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccc
Confidence 34444445567899999999988877776532 223589999999999999999999987
Q ss_pred -CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 276 -KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 276 -~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+..++.++.+.+. ..+.|+.+..++.+++.+.. ..+.||||||++.+.+....... .+. .+.|...+.
T Consensus 242 ~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d~----~n~Lkp~l~--- 313 (852)
T TIGR03345 242 RNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GDA----ANLLKPALA--- 313 (852)
T ss_pred cCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-ccH----HHHhhHHhh---
Confidence 3557888887765 36889999999999998864 45799999999999875432111 111 122333332
Q ss_pred cCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-----CCCCHHHHHHHhcCC
Q 010888 352 QSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGY 420 (498)
Q Consensus 352 ~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-----~~~~l~~La~~t~g~ 420 (498)
+ +.+.+|+||+.. ..+|+++.|||. .+.++.|+.++...||+.+....... .+..+..++..+.+|
T Consensus 314 -~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 314 -R-GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred -C-CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 2 347788888753 348999999994 79999999999999987665433221 223355555655554
No 80
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.61 E-value=7.9e-14 Score=144.69 Aligned_cols=171 Identities=22% Similarity=0.241 Sum_probs=117.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CeEEEE
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNI 282 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---------~~~i~v 282 (498)
.+.+..++++|.++.++.|...+...+. ...+.+++|+||||||||++++++++++. ..++++
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV 80 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 3556677999999999999988754322 13346799999999999999999998762 578889
Q ss_pred eccccchh----------c---------ccC-cHHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 283 SASSVVSK----------W---------RGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 283 ~~s~l~~~----------~---------~G~-~~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+|....+. . .+. ..+....++.... ...+.||+|||+|.+.... ..++.
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~ 150 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLY 150 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHH
Confidence 98654321 1 011 1223344444443 3446799999999996221 11333
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCC---CCCHHHHhccc-ceeEecCCCHHHHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLP 400 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~---~Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~ 400 (498)
.++...+.....+.++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++.++.
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 34333211122335688889998875 48889988885 6689999999999999999875
No 81
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=1.4e-14 Score=165.10 Aligned_cols=177 Identities=21% Similarity=0.326 Sum_probs=133.1
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 275 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------- 275 (498)
+...+.....+-.+++++|.+...+.+.+.+.. ....+++|+||||||||++|+++|..+
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~ 231 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 231 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchh
Confidence 444555555677899999999988888876633 223689999999999999999999988
Q ss_pred --CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 276 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 276 --~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
+.+++.++.+.+. .++.|..+..++.++..... ..++||||||+|.+.+..... ...+. .+.|...+
T Consensus 232 l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d~----~~~lkp~l--- 303 (857)
T PRK10865 232 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDA----GNMLKPAL--- 303 (857)
T ss_pred hCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchhH----HHHhcchh---
Confidence 6789999888765 46889999999999987543 568999999999998654322 11222 22222222
Q ss_pred ccCCCcEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC
Q 010888 351 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 403 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 403 (498)
.+ +.+.+|++|+..+ .+|+++.|||+ .+.++.|+.+++..||+.+.....
T Consensus 304 -~~-g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 304 -AR-GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred -hc-CCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 22 3477888887764 48999999996 588999999999999998765443
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.60 E-value=3.3e-14 Score=141.88 Aligned_cols=152 Identities=23% Similarity=0.367 Sum_probs=101.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---~i~v~~s~l~ 288 (498)
-++.+++|++|++.+..+ ...+...++ .....+++||||||||||+|||.|+.....+ |+++++..
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ie--------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-- 200 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIE--------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-- 200 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHH--------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc--
Confidence 456778888888876544 222211111 1223589999999999999999999988655 77777643
Q ss_pred hhcccCcHHHHHHHHHHHHh-----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 289 SKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
...+-++.+|+.++. ....|||||||+.+-. ..++.|+-.++ ++.|++|++|
T Consensus 201 -----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk-------------sQQD~fLP~VE-----~G~I~lIGAT 257 (554)
T KOG2028|consen 201 -----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK-------------SQQDTFLPHVE-----NGDITLIGAT 257 (554)
T ss_pred -----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-------------hhhhcccceec-----cCceEEEecc
Confidence 234567788887764 3458999999988742 23444554443 3346666555
Q ss_pred --CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHh
Q 010888 364 --NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 398 (498)
Q Consensus 364 --n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~ 398 (498)
|....|+.++++||.. +.+.....+.-..||.+-
T Consensus 258 TENPSFqln~aLlSRC~V-fvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 258 TENPSFQLNAALLSRCRV-FVLEKLPVNAVVTILMRA 293 (554)
T ss_pred cCCCccchhHHHHhccce-eEeccCCHHHHHHHHHHH
Confidence 5557899999999954 555555566666777663
No 83
>PRK06893 DNA replication initiation factor; Validated
Probab=99.60 E-value=3.8e-14 Score=138.10 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=107.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+..+|++++|.++.. +...+... +.. .....++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~~------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRKN------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH--HHHHHHHH------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4568899999766432 11111110 111 122468999999999999999999986 4455555553221
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
.....+++.. ....+|+|||++.+.++. .....++..++.....+..++|++++..|..
T Consensus 80 --------~~~~~~~~~~--~~~dlLilDDi~~~~~~~-----------~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 80 --------YFSPAVLENL--EQQDLVCLDDLQAVIGNE-----------EWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred --------hhhHHHHhhc--ccCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 1111222222 245799999999886432 1223345555444333444555555566665
Q ss_pred CC---HHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 369 LD---AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 369 Ld---~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
++ +.+++|+. ..+.++.|+.+++.+|++..+.......+ ..++.|+++..|
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR 195 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 54 88999774 57789999999999999988865554433 234556665553
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.6e-14 Score=152.21 Aligned_cols=188 Identities=20% Similarity=0.234 Sum_probs=132.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+..++.+|++++|++.+++.|+..+.. ...++++||+||||||||++|+++|+.+++.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456789999999999999999886643 2335789999999999999999999998652
Q ss_pred -----------------EEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCccchhhhccccchhhHHHH
Q 010888 279 -----------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASR 337 (498)
Q Consensus 279 -----------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~ 337 (498)
+++++++. ......++.+++.+... ...|++|||+|.+..
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------- 142 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------- 142 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-------------
Confidence 12222111 12334566666666432 346999999988742
Q ss_pred HHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHH
Q 010888 338 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVER 416 (498)
Q Consensus 338 ~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~ 416 (498)
...+.|+..++. ....+++|.+|+.++.+.+.+++|+ ..+.++.++.++...+++..++......+ ..+..++..
T Consensus 143 ~a~naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 143 GAFNALLKTLEE---PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345667777763 3445677777888888999999999 56899999999999999999876655433 235556666
Q ss_pred hcCCcHHHHHHHHHHH
Q 010888 417 TEGYSGSDIRLVSKEA 432 (498)
Q Consensus 417 t~g~s~~dL~~L~~~A 432 (498)
+.| +.+++..+++.+
T Consensus 219 s~G-slR~al~~Ldka 233 (507)
T PRK06645 219 SEG-SARDAVSILDQA 233 (507)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 554 445554444443
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.2e-14 Score=156.61 Aligned_cols=187 Identities=20% Similarity=0.222 Sum_probs=130.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
++.++.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++|+.+|+.++++
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456789999999999999999998753 2334689999999999999999999988543
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++.+. ......++.+++.+.. ....|++|||+|.|. ....+
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-------------~~A~N 137 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-------------KSAFN 137 (709)
T ss_pred HHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------HHHHH
Confidence 12222211 1223445666654432 335799999998873 23456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~ 420 (498)
.|+..++. ....+.+|.+|+.+..+.+.+++|| ..+.|+.++.++....|+.++.......+. .+..|++.+.|
T Consensus 138 ALLKtLEE---Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G- 212 (709)
T PRK08691 138 AMLKTLEE---PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG- 212 (709)
T ss_pred HHHHHHHh---CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-
Confidence 78888873 2344667778888889999999999 558888999999999999888766544322 34555555543
Q ss_pred cHHHHHHHHHH
Q 010888 421 SGSDIRLVSKE 431 (498)
Q Consensus 421 s~~dL~~L~~~ 431 (498)
+.+++..++..
T Consensus 213 slRdAlnLLDq 223 (709)
T PRK08691 213 SMRDALSLLDQ 223 (709)
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 86
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=2.9e-14 Score=145.14 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=113.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
...++.+|++++|++.+++.+...+.. ...++.+||+||||+|||++|++++++.+.+++.+++++ +
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~ 79 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C 79 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c
Confidence 456788999999999999999988742 123456777999999999999999999999999999876 2
Q ss_pred hcccCcHHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 290 KWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
. .......+........ ...+.+|+|||+|.+... .....+...++.. ...+.+|++||.+..
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~---~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY---SKNCSFIITANNKNG 143 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc---CCCceEEEEcCChhh
Confidence 1 1111122222211111 134689999999987221 1223344445432 233567889999999
Q ss_pred CCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 369 LDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 369 Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
+.+++++|| ..+.++.|+.+++..+++..+
T Consensus 144 l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 144 IIEPLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred chHHHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 999999999 468999999999988876543
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.60 E-value=2.2e-14 Score=138.75 Aligned_cols=205 Identities=16% Similarity=0.203 Sum_probs=122.9
Q ss_pred CCCCcccc--CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 214 DVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 214 ~~~~~~Iv--G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
..+|++++ +.+.+.+.+++++. .....+++|+||||||||++|+++++++ +.++++++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 45677776 36667888877652 1234789999999999999999999987 5788999988775
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
... ..++.... .+.+|+|||+|.+.... .....+...++.....+. .+|++++..+..
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~~~~~-~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVREAGG-RLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHHcCC-eEEEECCCChHH
Confidence 332 22222222 34699999999885421 012233333332222222 334444434433
Q ss_pred C--C-HHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 010888 369 L--D-AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443 (498)
Q Consensus 369 L--d-~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~ 443 (498)
+ . +.+.+|+. ..+.++.|+.+++..+++.++...... ++...+..+.+ .|.++++++.+.
T Consensus 137 ~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--------------~~~~~l~~L~~-~~~gn~r~L~~~ 201 (226)
T TIGR03420 137 LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--------------LPDEVADYLLR-HGSRDMGSLMAL 201 (226)
T ss_pred CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHH-hccCCHHHHHHH
Confidence 3 2 78888874 678899999999999998765433222 34444444444 355555555555
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 444 LEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 444 le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
++.....+.. ..+.|+.+.+.+.|
T Consensus 202 l~~~~~~~~~----~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 202 LDALDRASLA----AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHH----hCCCCCHHHHHHHh
Confidence 4433321111 11237777776665
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.9e-14 Score=152.37 Aligned_cols=177 Identities=21% Similarity=0.271 Sum_probs=124.3
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe----------
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 278 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---------- 278 (498)
....++.+|++|+|++.+++.|+..+.. ...++.+||+||||||||++|+++|+.+.+.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3456789999999999999999988754 1234567999999999999999999988531
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++.- ..-..++.+.+.+.. ..+.||+|||+|.+. +..++
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~n 134 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAFN 134 (504)
T ss_pred hhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHHH
Confidence 344443211 122334444443332 345799999998763 23456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..++. ....+++|.+|+.+..+.+.+.+|+. .+.|+.|+.++....++..+.......+ ..+..++..+.|
T Consensus 135 aLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777763 23346677778888899999999994 6999999999999999988876554422 234445555443
No 89
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.59 E-value=3e-14 Score=149.55 Aligned_cols=177 Identities=23% Similarity=0.328 Sum_probs=119.3
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhc----cCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hcccC
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFT----GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 294 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~----~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G~ 294 (498)
|+|++.+++.+...+....+...... ....+..++||+||||||||++|+++|+.++.||+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999877654332221110 11234578999999999999999999999999999999988753 56665
Q ss_pred cH-HHHHHHHHH----HHhcCCeEEEEcCccchhhhccccchhhHH-HHHHHHHHHHHhhCCc----------cCCCcEE
Q 010888 295 SE-KLIKVLFEL----ARHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLT----------QSDELVF 358 (498)
Q Consensus 295 ~~-~~l~~~f~~----a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~----------~~~~~vi 358 (498)
.. ..+..++.. .....++||||||+|.+...........+. ...+++.|+..|++-. ....+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 33 334444432 223467999999999998763221111111 2357788999997531 1112344
Q ss_pred EEEEeCCCC----------------------------------------------------CCCHHHHhcccceeEecCC
Q 010888 359 VLAATNLPW----------------------------------------------------ELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 359 VIaaTn~p~----------------------------------------------------~Ld~al~~Rf~~~i~~~~P 386 (498)
+|.|+|-.. .+.|++..|++..+.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 555554410 1467777789888899999
Q ss_pred CHHHHHHHHH
Q 010888 387 DTEARRAMFE 396 (498)
Q Consensus 387 d~~eR~~IL~ 396 (498)
+.++...|+.
T Consensus 313 ~~~~L~~Il~ 322 (412)
T PRK05342 313 DEEALVRILT 322 (412)
T ss_pred CHHHHHHHHH
Confidence 9999888887
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.59 E-value=3.6e-14 Score=137.80 Aligned_cols=204 Identities=13% Similarity=0.153 Sum_probs=124.4
Q ss_pred CCCCCCccccC--cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 212 SPDVKWESIKG--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~IvG--~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
.++.+|+++++ ...+...+.++.. ......+++|+||+|||||++|+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 34577999773 4556666665442 12344689999999999999999999976 67888888876
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+... +. ....+.+|+|||+|.+... .+..++..++........+++++++..|
T Consensus 81 ~~~~------------~~--~~~~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 81 PLLA------------FD--FDPEAELYAVDDVERLDDA-------------QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred hHHH------------Hh--hcccCCEEEEeChhhcCch-------------HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 5321 11 1223579999999987422 1233444444333333333444444333
Q ss_pred --CCCCHHHHhcc--cceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 367 --WELDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 367 --~~Ld~al~~Rf--~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
..+.+.+.+|| ...+.+++|+.+++..+++......... ++...+..+.+ .|.++++.+.+
T Consensus 134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--------------l~~~al~~L~~-~~~gn~~~l~~ 198 (227)
T PRK08903 134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--------------LADEVPDYLLT-HFRRDMPSLMA 198 (227)
T ss_pred HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHH-hccCCHHHHHH
Confidence 23568888888 4678999999988888888765443322 33334444444 45555555554
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
.++.....+. ...++||...++++|.
T Consensus 199 ~l~~l~~~~~----~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 199 LLDALDRYSL----EQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHH----HhCCCCCHHHHHHHHh
Confidence 4443221110 1124589999888886
No 91
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.4e-14 Score=155.22 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=128.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|+..+... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 3567889999999999999999987541 234678999999999999999999998641
Q ss_pred ------------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHH
Q 010888 279 ------------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEAS 336 (498)
Q Consensus 279 ------------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 336 (498)
++.++++.- ..-..++.+.+.+.. ....|++|||+|.|..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~------------ 138 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN------------ 138 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH------------
Confidence 223322210 122345555554432 2346999999998843
Q ss_pred HHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHH
Q 010888 337 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVE 415 (498)
Q Consensus 337 ~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~ 415 (498)
...+.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..+.|+.++.++....|+..+.......+. .+..|++
T Consensus 139 -~a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~ 213 (618)
T PRK14951 139 -TAFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR 213 (618)
T ss_pred -HHHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 245667777763 3344667777788888888899999 668999999999999998887665554332 3555666
Q ss_pred HhcCCcHHHHHHHH
Q 010888 416 RTEGYSGSDIRLVS 429 (498)
Q Consensus 416 ~t~g~s~~dL~~L~ 429 (498)
.+.| +.+++..++
T Consensus 214 ~s~G-slR~al~lL 226 (618)
T PRK14951 214 AARG-SMRDALSLT 226 (618)
T ss_pred HcCC-CHHHHHHHH
Confidence 5554 444444443
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.58 E-value=1.4e-13 Score=134.70 Aligned_cols=185 Identities=14% Similarity=0.120 Sum_probs=112.4
Q ss_pred CCCCCCcccc-C-cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 212 SPDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~Iv-G-~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
.+..+|++++ | ...+...+.+.... ....+++|+||||||||++++++++++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4567788887 4 45566666654321 123589999999999999999999876 44566666544
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.... ...+.+.... ..+|+|||++.+..+. .....+...++.....+...+++++++.|
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----------~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----------LWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----------HHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 3211 1122222222 2689999999885431 12223333333322223223455555666
Q ss_pred CC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHH
Q 010888 367 WE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 367 ~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
.. +.+.+++|+. ..+.+..|+.+++.++++..+.......+ .-++.|+++..+ +.+.+..++.
T Consensus 143 ~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~ 211 (235)
T PRK08084 143 RQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLD 211 (235)
T ss_pred HHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHH
Confidence 54 5799999995 67889999999999999986665544322 234556665553 3444444444
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=5.4e-14 Score=158.48 Aligned_cols=186 Identities=20% Similarity=0.155 Sum_probs=127.5
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
++.++.+|++|+|++.+++.|+..+.. ....+.+||+||+|||||++|+.+|+.+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 456788999999999999999988743 1233568999999999999999999999642
Q ss_pred ---------------EEEEeccccchhcccCcHHHHHHHHHHH----HhcCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 279 ---------------FFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 279 ---------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
++.++.... ..-..++.+.+.+ ......|+||||+|.|. ...
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-------------~~a 136 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-------------PQG 136 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-------------HHH
Confidence 222222111 0122233333222 23455799999999984 335
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 418 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~ 418 (498)
.+.|++.|+.. ...+++|.+|+.++.|.+.+++|+ ..+.|..++.++...+|+..+.......+. .+..+++...
T Consensus 137 ~NaLLK~LEEp---P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 137 FNALLKIVEEP---PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 67788888743 334667777788888889999999 668999999999999998888665544332 2444555554
Q ss_pred CCcHHHHHHHHH
Q 010888 419 GYSGSDIRLVSK 430 (498)
Q Consensus 419 g~s~~dL~~L~~ 430 (498)
| +.+++..+++
T Consensus 213 G-dlR~Al~eLE 223 (824)
T PRK07764 213 G-SVRDSLSVLD 223 (824)
T ss_pred C-CHHHHHHHHH
Confidence 4 4444444443
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.1e-14 Score=154.30 Aligned_cols=188 Identities=19% Similarity=0.219 Sum_probs=129.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+++++.+|++|+|++.+++.|...+.. ...++.+||+||||+|||++|+.+|+.+++.
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 346678999999999999999988753 1334678999999999999999999998652
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++. ......++.+.+.+.. ....|++|||+|.+.. ...+
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a~n 137 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SAFN 137 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HHHH
Confidence 22222211 1123345666655532 2346999999998842 3456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..+.|+.++.++-...+...+.......+ ..+..+++.+.|
T Consensus 138 aLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G- 212 (527)
T PRK14969 138 AMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG- 212 (527)
T ss_pred HHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 78888874 3344667777777888888899999 66999999999988888887765544332 234555655554
Q ss_pred cHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEA 432 (498)
Q Consensus 421 s~~dL~~L~~~A 432 (498)
+.+++..++..+
T Consensus 213 slr~al~lldqa 224 (527)
T PRK14969 213 SMRDALSLLDQA 224 (527)
T ss_pred CHHHHHHHHHHH
Confidence 444544444433
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.4e-14 Score=153.07 Aligned_cols=165 Identities=23% Similarity=0.301 Sum_probs=125.0
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc------h--
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------S-- 289 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~------~-- 289 (498)
+|-.|++++|+++.+++...... ....++-+.|+||||+|||.++++||+.+|+.|++++...+. +
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 36789999999999988552211 123345678999999999999999999999999999875443 2
Q ss_pred -hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC------------CccCCCc
Q 010888 290 -KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------------LTQSDEL 356 (498)
Q Consensus 290 -~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~------------~~~~~~~ 356 (498)
.|+|.....+-+.++......| +++|||+|.+...-+... .++||+.+|- +.-.-..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP---------asALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP---------ASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh---------HHHHHHhcChhhccchhhhccccccchhh
Confidence 3677777776666777666654 888999999984333221 2335555542 1122346
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
|++|||+|..+.++++|++|+ +.|+++-+..++...|.+.++
T Consensus 555 VLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999999999 679999999999999999887
No 96
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1e-13 Score=151.28 Aligned_cols=187 Identities=22% Similarity=0.244 Sum_probs=131.1
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 277 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~----------- 277 (498)
.+..++.+|++++|++.+++.|+..+.. ...++.+||+||+|||||++|+.+|+.+.+
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3557789999999999999999998754 233467999999999999999999998853
Q ss_pred -------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 278 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 278 -------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
.++.++++. +..-..++.+.+.+.. ..+.|++|||+|.|.. ...
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a~ 136 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GAF 136 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHH
Confidence 233333321 1233445666665542 3356999999998842 245
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
+.|+..++. ....+++|.+|+.++.+.+.+++|+. .+.|+.|+.++....++..+.......+ ..+..++..+.|
T Consensus 137 naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G 212 (559)
T PRK05563 137 NALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG 212 (559)
T ss_pred HHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 677777763 33346667677788899999999994 5889999999999999988876654433 234556665554
Q ss_pred CcHHHHHHHHH
Q 010888 420 YSGSDIRLVSK 430 (498)
Q Consensus 420 ~s~~dL~~L~~ 430 (498)
+.++...++.
T Consensus 213 -~~R~al~~Ld 222 (559)
T PRK05563 213 -GMRDALSILD 222 (559)
T ss_pred -CHHHHHHHHH
Confidence 4444444333
No 97
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2e-13 Score=148.61 Aligned_cols=187 Identities=19% Similarity=0.159 Sum_probs=126.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+..++.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 456788999999999999999998753 1334568999999999999999999988642
Q ss_pred ---------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 279 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 279 ---------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
++.++++.. ..-..++.+.+.+. .....|++|||+|.|.. ..
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-------------~A 134 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-------------AG 134 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-------------HH
Confidence 222222111 01233344433332 23456999999998842 35
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 418 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~ 418 (498)
.+.|+..++. ....+++|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++.......+. .+..++..+.
T Consensus 135 ~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~ 210 (584)
T PRK14952 135 FNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG 210 (584)
T ss_pred HHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6778888873 3345677777788889999999998 669999999999888888887765543332 2333444333
Q ss_pred CCcHHHHHHHHHH
Q 010888 419 GYSGSDIRLVSKE 431 (498)
Q Consensus 419 g~s~~dL~~L~~~ 431 (498)
-+.+++.++++.
T Consensus 211 -GdlR~aln~Ldq 222 (584)
T PRK14952 211 -GSPRDTLSVLDQ 222 (584)
T ss_pred -CCHHHHHHHHHH
Confidence 344444444443
No 98
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.6e-14 Score=150.65 Aligned_cols=175 Identities=16% Similarity=0.207 Sum_probs=120.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
...++.+|++++|++.+++.|...+.. ...++.+||+||+|||||++|+.+|+.+.+
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 346678999999999999999987743 123456899999999999999999998854
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++.+++..- ..-..++.+.+.+. .....|++|||+|.+. ....+
T Consensus 77 ~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-------------~~a~n 137 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-------------KQSFN 137 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-------------HHHHH
Confidence 2333332111 11123344444333 2345799999998884 23567
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhc
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 418 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~ 418 (498)
.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..++|..++.++-...++..+.......+ ..+..++..+.
T Consensus 138 aLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 138 ALLKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 78888874 2334556666677888888899999 67999999999988888887766544322 22444555444
No 99
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.57 E-value=5.6e-16 Score=154.14 Aligned_cols=360 Identities=19% Similarity=0.182 Sum_probs=206.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcccccccCCCCCccccchhhHHHHHhhhhhhc-------cccCcCCCCCCC-CCCCC
Q 010888 68 TERERFFFFLIFILSAISLLLRLSNLSAMADEPMPTRWTFQDFKMFYDAKFGRKK-------IKEPEKGEITER-PVSDG 139 (498)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~g 139 (498)
-||+. +.+.+||.++.+-++-+|.++.+.- -|-+..+.||++. +..+.++-+... ...++
T Consensus 75 seR~h--------l~L~aLL~al~~pVlsvd~kg~v~~----aNpAa~~l~~~~~~~~~g~~~~~l~~~~nf~~~l~~~~ 142 (511)
T COG3283 75 SEREH--------LALSALLEALPEPVLSVDMKGKVDM----ANPAACQLFGRKEDRLRGHTAAQLINGFNFLRWLEGEP 142 (511)
T ss_pred chhHh--------HHHHHHHHhCCCceEEecccCceee----cCHHHHHHhCCChhhhcCccHHHhcCcCCHHHHHhcCC
Confidence 47777 7899999999999999999999988 6778889999854 222221111100 11111
Q ss_pred CCCCCCCCcccCCChhhHHHHhhhhcCCCc-ccchhHHHHHHHHhhcCCCCCCcchHHHHHHHHHhhhhhhcCCCCCCCc
Q 010888 140 SSLNSNGHVQNTSDMAVYEQYRTQFQGSGS-TCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWE 218 (498)
Q Consensus 140 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 218 (498)
.......-+..+.+.-.--.+...+-++.. ...+..+.-+...+.. +.+ .....++...|+
T Consensus 143 ~~~~~~~V~~~gq~~lmeitPv~~~~~~~e~~lagav~~L~~~~r~g----------------e~~--~~~~~~~~~~F~ 204 (511)
T COG3283 143 QRSHNEHVVINGQNFLMEITPVYLQDENDEHVLAGAVVMLRSTNRMG----------------EQL--QNVAAQDVSGFE 204 (511)
T ss_pred CcCCCceEEEcchhheeeccceeecCCcchhheeheeeeehhhhhHH----------------HHH--hhcccccccchH
Confidence 111111111111111100001111111110 1111111000010000 000 012234567799
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW---- 291 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~---- 291 (498)
.|++.+..++.+.+.... ...-...+||.|.+||||.++|++.+..+ ..||+.+||+.+....
T Consensus 205 ~~v~~S~~mk~~v~qA~k----------~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsE 274 (511)
T COG3283 205 QIVAVSPKMKHVVEQAQK----------LAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESE 274 (511)
T ss_pred HHhhccHHHHHHHHHHHH----------hhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHH
Confidence 999999888888776533 23334679999999999999999999877 6899999998775432
Q ss_pred -ccCc--HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc--------CCCcEEEE
Q 010888 292 -RGDS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELVFVL 360 (498)
Q Consensus 292 -~G~~--~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~viVI 360 (498)
.|.. .+....+|+.|.+ +.+|+|||..+.+. ++..|+..+..-+. -..+|.||
T Consensus 275 lFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp~-------------lQaKLLRFL~DGtFRRVGee~Ev~vdVRVI 338 (511)
T COG3283 275 LFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSPR-------------LQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 338 (511)
T ss_pred HhcCCCCCCCccchhhhccC---CeEEeehhhhcCHH-------------HHHHHHHHhcCCceeecCCcceEEEEEEEE
Confidence 1211 2334567877766 56999999887544 56667777653221 12369999
Q ss_pred EEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHHHHHH
Q 010888 361 AATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDIRLVS 429 (498)
Q Consensus 361 aaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL~~L~ 429 (498)
+||..+- .+-..+.-|. ..+.+.+|...+|..-+.-.+ +.-+..+++. ...+++.-+..+.
T Consensus 339 catq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~-------e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 339 CATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLA-------ELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred ecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHH-------HHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 9997741 1223333455 446777777666653221111 1112222222 2347777888899
Q ss_pred HHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh--HHHHHHHHHHhchhcc
Q 010888 430 KEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH--AHRYEKFNADYGSEIL 497 (498)
Q Consensus 430 ~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~--~~~~~~~~~~~g~~~~ 497 (498)
++.|++++|++.|.+.++..+.++.. ++.+|+.-+.-...+...++ ...+++..+.|..+|+
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~~Eg~~------l~i~~i~Lp~~~~~~~~~~~~~~gsLdei~~~fE~~VL 474 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTLLEGYE------LRIEDILLPDYDAATVVGEDALEGSLDEIVSRFERSVL 474 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHHhccCc------cchhhcccCCcccccccchhhccCCHHHHHHHHHHHHH
Confidence 99999999999999988877666555 66777654444333332222 2455556666655554
No 100
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=6.3e-14 Score=156.19 Aligned_cols=152 Identities=22% Similarity=0.346 Sum_probs=106.6
Q ss_pred CCCCCCCccccCcHHHHH---HHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 211 GSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~---~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..++.+|++++|++.+.. .+++.+.. ....+++|+||||||||++|+++++.++.+++.+++...
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 345788999999999885 45554422 223589999999999999999999999999998887532
Q ss_pred chhcccCcHHHHHHHHHHHH-----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 288 VSKWRGDSEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~-----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
. .+.++..+..+. .....+|||||+|.+... .++.|+..++. ..+++|++
T Consensus 89 ~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~-----g~IiLI~a 143 (725)
T PRK13341 89 G-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVEN-----GTITLIGA 143 (725)
T ss_pred h-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhcC-----ceEEEEEe
Confidence 1 112233333221 134579999999988432 23455555542 23556655
Q ss_pred eC-C-CCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcC
Q 010888 363 TN-L-PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 400 (498)
Q Consensus 363 Tn-~-p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~ 400 (498)
|+ . ...+++++++|+ ..+.+++++.++...+++..+.
T Consensus 144 TTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 144 TTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred cCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 53 3 356889999997 5689999999999999998875
No 101
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.57 E-value=4.1e-14 Score=161.73 Aligned_cols=178 Identities=20% Similarity=0.344 Sum_probs=132.3
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 275 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------- 275 (498)
+...+.....+-.++.++|.+...+.+.+.+.. ....+++|+||||||||++|++++..+
T Consensus 159 ~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~ 226 (852)
T TIGR03346 159 YARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPES 226 (852)
T ss_pred HhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchh
Confidence 444555555677899999999988888876633 233688999999999999999999986
Q ss_pred --CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 276 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 276 --~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
+.+++.++.+.+. .++.|..+..++.++..+.. ..+.||||||+|.+.+....... .+ ..+.|...+
T Consensus 227 l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~-~d----~~~~Lk~~l--- 298 (852)
T TIGR03346 227 LKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA-MD----AGNMLKPAL--- 298 (852)
T ss_pred hcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch-hH----HHHHhchhh---
Confidence 6788888887775 46888999999999998865 35899999999999764322111 11 222222222
Q ss_pred ccCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCC
Q 010888 351 TQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 404 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~ 404 (498)
. .+.+.+|++|+.. ..+|+++.+||. .+.++.|+.+++..||+.+......
T Consensus 299 -~-~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~ 354 (852)
T TIGR03346 299 -A-RGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEV 354 (852)
T ss_pred -h-cCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhcc
Confidence 2 3347788888765 347999999995 5899999999999999987655443
No 102
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=1.9e-14 Score=163.92 Aligned_cols=195 Identities=18% Similarity=0.283 Sum_probs=140.6
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 275 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------- 275 (498)
+.+++......-.+++++|.++..+.+.+.+.. ...++++|+||||||||++|+.+|.++
T Consensus 165 ~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~ 232 (821)
T CHL00095 165 FGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232 (821)
T ss_pred HHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 445555555567799999999999999988743 234689999999999999999999987
Q ss_pred --CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 276 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 276 --~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+.+++.++++.+. .+|.|+.+..++.+++.+....+.||||||+|.+.+....... .+ +.+.|...+.
T Consensus 233 l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~~----~a~lLkp~l~--- 304 (821)
T CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-ID----AANILKPALA--- 304 (821)
T ss_pred hcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-cc----HHHHhHHHHh---
Confidence 4789999998776 4678999999999999998878899999999999875432111 11 2222222222
Q ss_pred cCCCcEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC----CCCC-CCCCHHHHHHHhcCCc
Q 010888 352 QSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS----QTGE-ESLPYDLLVERTEGYS 421 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~----~~~~-~~~~l~~La~~t~g~s 421 (498)
+ +.+.+|++|+..+ ..++++.+||. .+.++.|+.++...|++..... +... .+..+..++..+.+|.
T Consensus 305 -r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 305 -R-GELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred -C-CCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 2 3467788887653 47899999995 5889999999999998865421 1111 2223555566665543
No 103
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.56 E-value=7.2e-14 Score=144.40 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=122.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
..++.+|++++|++.+++.+.+.+.. ...++.+||+||||+|||++|+++++.+..+
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 35678999999999999999987743 2334679999999999999999999987432
Q ss_pred ------------EEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 279 ------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 279 ------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
++.+++.. ......++.+++.+... .+.|++|||+|.+.. ...+.
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------~~~~~ 136 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------SAFNA 136 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-------------HHHHH
Confidence 23333221 11233456666655432 346999999988842 23556
Q ss_pred HHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 343 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 343 Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
++..++. ....+++|.+|+.+..+.+.+++|+ ..+.++.|+.++...+++.+++......+ ..+..++..+.|
T Consensus 137 Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEE---PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHhC---CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777763 2334667777888888889999999 56899999999999999988876554322 234445555544
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=8e-14 Score=148.19 Aligned_cols=196 Identities=18% Similarity=0.321 Sum_probs=121.6
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~Iv-G~~~--~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.+..+|++++ |..+ +...+.+....+ ....+++||||||+|||+|++++++++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~-----------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP-----------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc-----------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5678899987 6433 333333332111 113579999999999999999999986 46788999
Q ss_pred ccccchhcccCcH-HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~-~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+.++...+..... ..+.. |.......+.+|+|||++.+.+.. .....++..++.+...+. .+|+++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~-----------~~q~elf~~~n~l~~~~k-~iIits 234 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT-----------GVQTELFHTFNELHDSGK-QIVICS 234 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH-----------HHHHHHHHHHHHHHHcCC-eEEEEC
Confidence 8877655432111 11112 222222357899999999885431 122334444443333333 445555
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A 432 (498)
...|.. +.+.+.+||. ..+.+.+|+.++|..|++..+.......+ ..++.|++...+ +.++|..++...
T Consensus 235 d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 566654 5678888984 46788999999999999999876544433 235556666554 556666655543
No 105
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.56 E-value=1.4e-13 Score=132.93 Aligned_cols=191 Identities=21% Similarity=0.265 Sum_probs=136.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
...+.+++++|.+..|+.|.+....++. ..|.+++||||++|||||++++++.++. |..++.|...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4568899999999999999998866543 3567899999999999999999999987 7889999887763
Q ss_pred hhcccCcHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC-CccCCCcEEEEEEeCCC
Q 010888 289 SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLP 366 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-~~~~~~~viVIaaTn~p 366 (498)
.+..+++..+. ..+-|||+||+. + .. . ..--..|-..++| +...+.+|+|.+|+|+-
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs-F--e~----~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS-F--EE----G-----DTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC-C--CC----C-----cHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 23445555443 245799999973 1 10 0 1122345555665 46778889999999875
Q ss_pred CCCC-----------------------HHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHH----HHHHhc
Q 010888 367 WELD-----------------------AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTE 418 (498)
Q Consensus 367 ~~Ld-----------------------~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~----La~~t~ 418 (498)
..++ -+|..||...+.|..|+.++-.+|++.++.......+. .+.. .|..-.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 3211 13445999999999999999999999999777665442 2322 233345
Q ss_pred CCcHHHHHHHHHH
Q 010888 419 GYSGSDIRLVSKE 431 (498)
Q Consensus 419 g~s~~dL~~L~~~ 431 (498)
|.||+--.+.++.
T Consensus 232 ~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 232 GRSGRTARQFIDD 244 (249)
T ss_pred CCCHHHHHHHHHH
Confidence 6777766555543
No 106
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.8e-14 Score=150.39 Aligned_cols=164 Identities=25% Similarity=0.248 Sum_probs=125.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc------h---
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------S--- 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~------~--- 289 (498)
|-.|++.+|+++.+++....... .....-++|+||||+|||.|++.||+.+++.|+.++...+. +
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 56899999999999886533211 11224578999999999999999999999999999875443 2
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC------------ccCCCcE
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELV 357 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------------~~~~~~v 357 (498)
.|+|.....+-+-+..+....| +++|||||.|..+-+... .++||..+|-- .-.-..|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP---------aSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP---------ASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh---------HHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 3777777777666777777665 888999999987643321 23455555411 1122469
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
++|+|+|..+.++.+|++|+ +.|++.-++.++..+|.+.++
T Consensus 468 mFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 99999999999999999999 679999999999999999887
No 107
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.56 E-value=1.1e-13 Score=134.05 Aligned_cols=195 Identities=21% Similarity=0.312 Sum_probs=119.8
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~Iv-G--~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.|+.+|++++ | .+.+...+......+ ......++||||+|+|||+|.+++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 4678999985 5 344555555543321 1223569999999999999999999875 57789999
Q ss_pred ccccchhcccCcHH-HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~~-~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+.++...+...... .+..+.+.. ....+|+|||++.+..+ ...+..++..++.+...+. .+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k-~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGK-QLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCC-eEEEEe
Confidence 88876554322111 111222222 24579999999998643 3355667777766555544 445655
Q ss_pred eCCCCC---CCHHHHhcccc--eeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 431 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~~--~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~ 431 (498)
...|.. +++.+.+||.. .+.+..|+.++|..|++..+.......+.+ ++.|+++.. -+.++|..+++.
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~ 211 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNR 211 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHH
Confidence 566654 67899999854 678889999999999999998877765444 344555544 456666655554
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.2e-13 Score=150.24 Aligned_cols=176 Identities=19% Similarity=0.202 Sum_probs=121.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
...++.+|++|+|++.+++.|...+... .-..++||+||||||||++|+.+|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 3467889999999999999999887431 223689999999999999999999998653
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.+++..- ..-..++.+.+.+. .....||+|||+|.|. ...++
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-------------~~a~n 137 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-------------REAFN 137 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------HHHHH
Confidence 333433211 01122333322222 2345799999999884 23457
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..++.. ...+++|.+|+.+..+.+.+++|+ ..+.|+.++.++...+|+..+.......+ ..++.+++.+.|
T Consensus 138 aLLk~LEEP---~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 138 ALLKTLEEP---PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHhhcc---CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788887742 234677778888888888999999 46899999999999888887765544322 234445555543
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.1e-13 Score=149.63 Aligned_cols=177 Identities=18% Similarity=0.221 Sum_probs=123.6
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 277 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~----------- 277 (498)
....++.+|++++|++.+++.+...+.. ...++++||+||+|+|||++|+++|+.+.+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456789999999999999999987643 233478999999999999999999998843
Q ss_pred -------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 278 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 278 -------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
.++.++++.. ..-..++.+...+.. ....|++|||+|.|.. ...
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-------------~A~ 136 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-------------SAW 136 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-------------HHH
Confidence 2233332211 122335555544432 2346999999998842 245
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcC
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 419 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g 419 (498)
+.|+..++. ....+++|.+|+.+..+.+.+++|+. .+.|+.|+.++....++..+....... +..+..++..+.|
T Consensus 137 NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 137 NALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 678888873 23346677777888899999999994 689999999999999988876554332 2234455555554
No 110
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.3e-13 Score=151.88 Aligned_cols=193 Identities=19% Similarity=0.218 Sum_probs=130.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE---ecc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI---SAS 285 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v---~~s 285 (498)
.+..++.+|++|+|++.+++.|+..+.. ...++.+||+||+|+|||++|+++|+.+.++-... .|.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 3456789999999999999999998754 13346789999999999999999999886531100 010
Q ss_pred cc---ch---h---ccc---CcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC
Q 010888 286 SV---VS---K---WRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 349 (498)
Q Consensus 286 ~l---~~---~---~~G---~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 349 (498)
.. .+ . ..+ .....++.+.+.+.. ....|++|||+|.|.. ...+.|+..++.
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-------------~A~NALLKtLEE 144 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-------------SAFNALLKTLEE 144 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-------------HHHHHHHHHhhc
Confidence 00 00 0 001 123446666665543 3456999999998842 246678888873
Q ss_pred CccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHH
Q 010888 350 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLV 428 (498)
Q Consensus 350 ~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L 428 (498)
....+++|.+|+.++.+.+.+++|+ ..+.|..++.++....|+..+.......+. .+..++..+.| +.+++..+
T Consensus 145 ---PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 ---PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred ---CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3344667777888889999999999 479999999999999998877665544332 24556665554 33444333
Q ss_pred HH
Q 010888 429 SK 430 (498)
Q Consensus 429 ~~ 430 (498)
+.
T Consensus 220 Le 221 (725)
T PRK07133 220 AE 221 (725)
T ss_pred HH
Confidence 33
No 111
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=3.4e-14 Score=146.97 Aligned_cols=248 Identities=26% Similarity=0.323 Sum_probs=162.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hccc-C
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G-~ 294 (498)
-|+|++++|+.+...+.....+....... ..+++++||+||||||||++|+++|..++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 48999999999988776532222111111 224589999999999999999999999999999999987763 5666 4
Q ss_pred cHHHHHHHHHHH--------------------------------------------------------------------
Q 010888 295 SEKLIKVLFELA-------------------------------------------------------------------- 306 (498)
Q Consensus 295 ~~~~l~~~f~~a-------------------------------------------------------------------- 306 (498)
.+..++.+|..+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 555555554443
Q ss_pred -----------------------------------------------------------------------HhcCCeEEE
Q 010888 307 -----------------------------------------------------------------------RHHAPSTIF 315 (498)
Q Consensus 307 -----------------------------------------------------------------------~~~~p~VL~ 315 (498)
+....+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012347999
Q ss_pred EcCccchhhhccccchhhHH-HHHHHHHHHHHhhCCcc-------CCCcEEEEEEe----CCCCCCCHHHHhcccceeEe
Q 010888 316 LDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILV 383 (498)
Q Consensus 316 IDEiD~l~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~-------~~~~viVIaaT----n~p~~Ld~al~~Rf~~~i~~ 383 (498)
|||+|+++...... ..++ ..-++..||..++|-.. ...++++|++. ..|.+|-|.+.-||...+.+
T Consensus 253 iDEiDKIa~~~~~~--~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESS--GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCC--CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEEC
Confidence 99999998764211 1122 23478889999987422 23468888776 35777899999999999999
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhchh----
Q 010888 384 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEGRQ---- 448 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g----~s~~dL~~L~~~A~~~-------a~rrl~~~le~~~---- 448 (498)
..++.++...||..--... -..+..+- .+.| |+...++.+.+.|... -+|++..+++..-
T Consensus 331 ~~L~~edL~rILteP~nsL----ikQy~~Lf-~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSL----IKQYKALM-KTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred CCCCHHHHHHHhcCChhHH----HHHHHHHH-hhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 9999999998885311000 00001111 1222 7788888888888752 2466666665432
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 449 EVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 449 ~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
..+++... ....|+.+.+...+...
T Consensus 406 fe~p~~~~-~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 406 FEAPDLSG-QNITIDADYVSKKLGAL 430 (441)
T ss_pred hcCCCCCC-CEEEECHHHHHhHHHHH
Confidence 22333222 22347887777766643
No 112
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=5.6e-13 Score=139.84 Aligned_cols=227 Identities=21% Similarity=0.225 Sum_probs=141.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEecccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSV 287 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~l 287 (498)
+....+.++|.++..+++...+..... ...+.+++|+||||||||++++.+++++ +..+++++|...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 445567899999999999888744321 1234679999999999999999999987 577899998643
Q ss_pred ch----------hcc-------cC-cHHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 288 VS----------KWR-------GD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 288 ~~----------~~~-------G~-~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
.+ ... +. .......+.+.... ..+.||+|||+|.+..... ...+..++..++
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~ 167 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHE 167 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhh
Confidence 21 111 11 12233333333332 3468999999999972111 123444555544
Q ss_pred CCccCCCcEEEEEEeCCCC---CCCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCCCC---CCCCCHHHHHHHhcCCc
Q 010888 349 GLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTG---EESLPYDLLVERTEGYS 421 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p~---~Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~---~~~~~l~~La~~t~g~s 421 (498)
... ..++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++.++..... -.+..++.+++.+.+.+
T Consensus 168 ~~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 168 EYP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred ccC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 332 23577888888763 47888888874 56899999999999999988753211 12223455566553322
Q ss_pred HHHHH---HHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 422 GSDIR---LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 422 ~~dL~---~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+|++ .++..|+..+..+ + ...|+.+|+..|+..+.++
T Consensus 246 -Gd~r~a~~ll~~a~~~a~~~------~------------~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 246 -GDARVAIDLLRRAGLIAERE------G------------SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred -CcHHHHHHHHHHHHHHHHHc------C------------CCCcCHHHHHHHHHHHHHH
Confidence 2333 3444444433221 0 0137888888888776443
No 113
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.54 E-value=4.3e-13 Score=131.79 Aligned_cols=178 Identities=21% Similarity=0.239 Sum_probs=127.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------eEEEEe
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TFFNIS 283 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------~~i~v~ 283 (498)
....+.+|++++|++.+++.|+..+.. ....++|||||||||||+.|+++|+++.. .+...+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 345678899999999999999998743 22358999999999999999999999955 345556
Q ss_pred ccccchhcccCcHHHHHHHHHHHHh---------cC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARH---------HA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 353 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~---------~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 353 (498)
+++-.+..++ ..+++. |..... .+ +-|++|||.|.|..+ .+..|...|+..
T Consensus 96 aSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~--- 156 (346)
T KOG0989|consen 96 ASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMEDF--- 156 (346)
T ss_pred ccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhcc---
Confidence 6665554332 111211 222111 11 259999999999643 566777888754
Q ss_pred CCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcC
Q 010888 354 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEG 419 (498)
Q Consensus 354 ~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g 419 (498)
...+.+|..||.++.+...+.+|+.. +.|+....+.-...|+.++.+.....+.+ ++.+++.++|
T Consensus 157 s~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 SRTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred ccceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 33467888999999999999999955 67777777777778888887777765543 5666666655
No 114
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.54 E-value=1.3e-14 Score=148.62 Aligned_cols=198 Identities=21% Similarity=0.192 Sum_probs=132.9
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc----
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---- 292 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~---- 292 (498)
|+|.+...+.+.+.+.. ......+|||+|++||||+++|++|+..+ +.||+.++|+.+.....
T Consensus 1 liG~S~~m~~~~~~~~~----------~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSR----------LAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHH----------HhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 57888888888877644 23445789999999999999999999877 47999999987643211
Q ss_pred -cCc-------HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------ccCCCc
Q 010888 293 -GDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 356 (498)
Q Consensus 293 -G~~-------~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~ 356 (498)
|.. .......+..+ ..++|||||++.|... ++..|+..++.- .....+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence 110 00011223333 3478999999998644 445566655432 112345
Q ss_pred EEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----h-cCCcHHH
Q 010888 357 VFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----T-EGYSGSD 424 (498)
Q Consensus 357 viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t-~g~s~~d 424 (498)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|.+-+..++.. -+..++.. . .++++..
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~-------fl~~~~~~~~~~~~~~ls~~a 206 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEH-------FAIRMARELGLPLFPGFTPQA 206 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHH-------HHHHHHHHhCCCCCCCcCHHH
Confidence 7889998764 234566777774 3677888888877644443321 11222222 2 4689999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 425 IRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 425 L~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
+..|.++.|++++|++.+.++......
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 999999999999999999998776544
No 115
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=150.76 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=125.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+.+++.+|++|+|++.+++.|...+.. ...++.+||+||+|+|||++|+++|+.+.+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 456789999999999999999988743 1334678999999999999999999998542
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++++++..- ..-..++.+.+.+.. ....|++|||+|.|.. ...+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-------------~a~n 137 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-------------NAFN 137 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-------------HHHH
Confidence 233332211 122345555554432 2346999999998842 3467
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..|+. ....+++|.+|+.++.+.+.+++|+ ..+.|..++.++-...++..++......+ ..+..+++.+.|
T Consensus 138 aLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 138 ALLKTLEE---PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 78888873 3344677778888899999999999 56899999998888888887766554422 234555665554
No 116
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=3.8e-13 Score=142.91 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=121.2
Q ss_pred CCCCCCcccc-CcHHH--HHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 212 SPDVKWESIK-GLENA--KRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 212 ~~~~~~~~Iv-G~~~~--k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.|..+|++++ |..+. ...+.+....+.. ....+.++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 5678899987 54433 3344443322110 001233679999999999999999999977 6888999887
Q ss_pred ccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 286 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
++...+...........|.... ..+.+|+|||++.+.++. ..+..++..++.+...+ ..+|++++..
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-----------~~qeelf~l~N~l~~~~-k~IIlts~~~ 245 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-----------ATQEEFFHTFNSLHTEG-KLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-----------hhHHHHHHHHHHHHHCC-CcEEEecCCC
Confidence 7654433221111111233222 346899999999885431 12233444444332222 2444544444
Q ss_pred CC---CCCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 010888 366 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 366 p~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~A 432 (498)
|. .+++++++||. ..+.+..|+.++|..||+..+.......+.+ ++.++....+ +.++|...+...
T Consensus 246 p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 246 PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 53 46789999995 6778888999999999999887765443333 4446665553 344454444433
No 117
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=5.4e-13 Score=144.55 Aligned_cols=196 Identities=15% Similarity=0.235 Sum_probs=124.5
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 010888 212 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~Iv-G~~~--~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~ 283 (498)
.+..+|++++ |..+ +...+...+.. .....+.++|||++|+|||+|+++|++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~----------~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEA----------PAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhC----------ccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3567899886 4333 23333333221 11223459999999999999999999987 56889999
Q ss_pred ccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
+.++...+...........|... -..+++|+|||++.+..+. .....|+..++.+...+..+ || |+
T Consensus 352 aeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke-----------~tqeeLF~l~N~l~e~gk~I-II-TS 417 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE-----------STQEEFFHTFNTLHNANKQI-VL-SS 417 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-----------HHHHHHHHHHHHHHhcCCCE-EE-ec
Confidence 98877665432222111223222 2346899999999986542 22344555555443333333 34 55
Q ss_pred CCC-C---CCCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 010888 364 NLP-W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 364 n~p-~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~A 432 (498)
|.+ . .+++.|++||. ..+.+..|+.+.|..||+..+....+....+ ++.|+.+..+ +.++|..++...
T Consensus 418 d~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 418 DRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred CCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 543 3 47889999994 5568888999999999999988776654433 4556666553 556666655543
No 118
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.1e-13 Score=148.49 Aligned_cols=186 Identities=17% Similarity=0.170 Sum_probs=126.8
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
+..++.+|++|+|++.+++.|+..+.. ...++.+||+||+|+|||++|+++|+.+.+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456789999999999999999998753 1234679999999999999999999998642
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+. ....+
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-------------~~a~n 137 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-------------NSAFN 137 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------HHHHH
Confidence 12222110 011233444443332 2345799999999883 23566
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++. ....+++|.+|+.+..+.+++++|+. .+.|..++.++...+++..+.......+ ..+..++..+.|
T Consensus 138 aLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G- 212 (563)
T PRK06647 138 ALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG- 212 (563)
T ss_pred HHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77877763 33456677777778889999999995 5899999999999999887765544322 234455555554
Q ss_pred cHHHHHHHHH
Q 010888 421 SGSDIRLVSK 430 (498)
Q Consensus 421 s~~dL~~L~~ 430 (498)
+.+++..++.
T Consensus 213 dlR~alslLd 222 (563)
T PRK06647 213 SVRDAYTLFD 222 (563)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 119
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=3.6e-13 Score=151.82 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=146.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch---------
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--------- 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~--------- 289 (498)
++.|++.+|+.+.+++....... ......++|+||||+|||++++.+|+.++.+++.++.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 48999999999998876432211 123346999999999999999999999999999998765432
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC------------ccCCCcE
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELV 357 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------------~~~~~~v 357 (498)
.+.|.....+...+..+.... .||+|||+|.+....+. ...+.|+..++.- ...-..+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 244444444444454444334 48999999999765321 1234566666521 1122568
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-----CCC-C-----CCCHHHHHHH-hcCCcHHHH
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-----TGE-E-----SLPYDLLVER-TEGYSGSDI 425 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-----~~~-~-----~~~l~~La~~-t~g~s~~dL 425 (498)
++|+|+|.. .+++++++|| ..+.+..++.++..+|.+.++... ... . +..++.+++. +..+-.+.|
T Consensus 467 ~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred EEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 899999887 5999999999 568999999999999998887311 111 1 1113334432 223344666
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 426 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 426 ~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
+..++......+.+... .+. . ....|+.+++.+.|..-
T Consensus 545 eR~I~~i~r~~l~~~~~--~~~--------~-~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 545 EREISKLCRKAVKQLLL--DKS--------L-KHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHh--cCC--------C-ceeeecHHHHHHHhCCC
Confidence 66666544444433221 100 0 11248999999988743
No 120
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.52 E-value=4.2e-14 Score=146.38 Aligned_cols=244 Identities=26% Similarity=0.362 Sum_probs=162.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hccc-C
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G-~ 294 (498)
.|+|++++|+.+..++............. ...+.++||+||||||||++|+++|+.++.+|+.++++.+.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 49999999999998875532222111111 122479999999999999999999999999999999987774 5777 3
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 010888 295 SEKLIKVLFELAR------------------------------------------------------------------- 307 (498)
Q Consensus 295 ~~~~l~~~f~~a~------------------------------------------------------------------- 307 (498)
.+..++.++..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4455555554440
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 010888 308 -----------------------------------------------------------------------HHAPSTIFL 316 (498)
Q Consensus 308 -----------------------------------------------------------------------~~~p~VL~I 316 (498)
....+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred cCccchhhhccccchhhHHH-HHHHHHHHHHhhCCcc-------CCCcEEEEEEe----CCCCCCCHHHHhcccceeEec
Q 010888 317 DEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVP 384 (498)
Q Consensus 317 DEiD~l~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~~~-------~~~~viVIaaT----n~p~~Ld~al~~Rf~~~i~~~ 384 (498)
||||+++...+.. ..+++ .-++..||..++|-.. +..++++||+. ..|.+|-|.+..||...+.+.
T Consensus 256 DEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 9999998764321 12222 3478889999987421 23468888775 456778899999999999999
Q ss_pred CCCHHHHHHHHHH----hcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhchhc
Q 010888 385 LPDTEARRAMFES----LLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEGRQE 449 (498)
Q Consensus 385 ~Pd~~eR~~IL~~----~l~~~~~~~~~~l~~La~~t~g----~s~~dL~~L~~~A~~~-------a~rrl~~~le~~~~ 449 (498)
.++.++...||.. .++.. ..+-+ ++| |+...|+.+.+.|... -+|++..+++..-.
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy--------~~Lf~-~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQY--------QALLA-TEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHH--------HHHHh-hcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 9999999988853 11110 01110 122 7788888888888763 24666666664421
Q ss_pred ----cCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 450 ----VAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 450 ----~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
.+++... ....|+.+-+...+..+
T Consensus 405 d~~Fe~p~~~~-~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 405 DISFEAPDMSG-ETVTIDAAYVDEKLGDL 432 (443)
T ss_pred HHhccCCCCCC-CEEEECHHHHHHHHHHH
Confidence 2233221 22347777776666543
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.52 E-value=1.1e-12 Score=144.68 Aligned_cols=172 Identities=20% Similarity=0.256 Sum_probs=111.7
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 275 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------- 275 (498)
+.+....++.+|++++|++..++.+.+.+.. ..+.+++|+||||||||++|+.+++..
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~ 209 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE 209 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC
Confidence 3344445678999999999999988766532 223579999999999999999998765
Q ss_pred CCeEEEEeccccch-------hcccCcHHH----HHHHHH----------HHHhcCCeEEEEcCccchhhhccccchhhH
Q 010888 276 KTTFFNISASSVVS-------KWRGDSEKL----IKVLFE----------LARHHAPSTIFLDEIDAIISQRGEARSEHE 334 (498)
Q Consensus 276 ~~~~i~v~~s~l~~-------~~~G~~~~~----l~~~f~----------~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~ 334 (498)
+.+|+.+++..+.. .+.|..... .+..+. .......++|||||++.|...
T Consensus 210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------- 280 (615)
T TIGR02903 210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------- 280 (615)
T ss_pred CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH---------
Confidence 35789999876521 111111000 000010 011223579999999988543
Q ss_pred HHHHHHHHHHHHhhCCc-------------------------cCCCcEEEE-EEeCCCCCCCHHHHhcccceeEecCCCH
Q 010888 335 ASRRLKTELLIQMDGLT-------------------------QSDELVFVL-AATNLPWELDAAMLRRLEKRILVPLPDT 388 (498)
Q Consensus 335 ~~~~i~~~Ll~~ld~~~-------------------------~~~~~viVI-aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~ 388 (498)
.+..|+..++.-. .....+++| +||+.++.+++++++||. .+++++++.
T Consensus 281 ----~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~ 355 (615)
T TIGR02903 281 ----LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTP 355 (615)
T ss_pred ----HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCH
Confidence 2333444443210 011224444 456678889999999995 578888999
Q ss_pred HHHHHHHHHhcCCCC
Q 010888 389 EARRAMFESLLPSQT 403 (498)
Q Consensus 389 ~eR~~IL~~~l~~~~ 403 (498)
++...|++..+....
T Consensus 356 edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 356 EDIALIVLNAAEKIN 370 (615)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999876543
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.9e-13 Score=145.21 Aligned_cols=176 Identities=22% Similarity=0.272 Sum_probs=120.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 278 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------- 278 (498)
...++.+|++++|++.+++.|+..+.. ...++.+||+||+|+|||++|+.+|+.+++.
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 346788999999999999999988743 1234568999999999999999999988531
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+.. ...+
T Consensus 77 ~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-------------~a~n 137 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-------------EAFN 137 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-------------HHHH
Confidence 12221111 0112234444444432 3357999999998742 2456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g 419 (498)
.|+..++.. ...+++|.+|+.++.+.+++.+|+. .+.|+.|+.++...+++.+++......+. .+..++..+.|
T Consensus 138 aLLk~LEep---p~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 138 ALLKTLEEP---PPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHHhcC---CCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 677777632 2335556666777788889999994 68999999999999999988766544322 34445555443
No 123
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=2.9e-13 Score=141.58 Aligned_cols=179 Identities=25% Similarity=0.359 Sum_probs=119.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhh------ccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYF------TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KW 291 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~------~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~ 291 (498)
-++|++++++.+...+....+..... .+......++||+||||||||++|+++|..++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 47999999999987764322221110 001122468999999999999999999999999999999887653 46
Q ss_pred ccCc-HHHHHHHHHHH----HhcCCeEEEEcCccchhhhccccchhhHH-HHHHHHHHHHHhhCCcc----------CCC
Q 010888 292 RGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----------SDE 355 (498)
Q Consensus 292 ~G~~-~~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~----------~~~ 355 (498)
+|.. +..+...+..+ ....++||||||+|.+.+++.......++ ...+++.|++.++|... +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 34444444322 23457899999999998754322111111 12577888888876421 123
Q ss_pred cEEEEEEeCCCC--------------------------------------------------CCCHHHHhcccceeEecC
Q 010888 356 LVFVLAATNLPW--------------------------------------------------ELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 356 ~viVIaaTn~p~--------------------------------------------------~Ld~al~~Rf~~~i~~~~ 385 (498)
+.++|.|+|-.. .+.|+++.|++.++.|.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 456777776510 044677778888888888
Q ss_pred CCHHHHHHHHHH
Q 010888 386 PDTEARRAMFES 397 (498)
Q Consensus 386 Pd~~eR~~IL~~ 397 (498)
.+.++...|+..
T Consensus 318 L~~~~L~~Il~~ 329 (413)
T TIGR00382 318 LDEEALIAILTK 329 (413)
T ss_pred CCHHHHHHHHHH
Confidence 899998888865
No 124
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.52 E-value=3.1e-14 Score=153.73 Aligned_cols=218 Identities=20% Similarity=0.233 Sum_probs=141.8
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 290 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~ 290 (498)
..+|++++|.+..++.+.+.+.. ......+|||+|++||||+++|++|++.+ +.||+.+||+.+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~----------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRL----------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHH----------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 47799999999999999988754 23445789999999999999999999876 579999999876432
Q ss_pred -----cccCc--------HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc------
Q 010888 291 -----WRGDS--------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 351 (498)
Q Consensus 291 -----~~G~~--------~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 351 (498)
..|.. ......+|+.+. .++|||||++.|... ++..|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCC
Confidence 11110 011223444444 368999999998654 4555666654321
Q ss_pred --cCCCcEEEEEEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHHHH----HhcCCCCCCCCCCHHHHHHHhc
Q 010888 352 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFE----SLLPSQTGEESLPYDLLVERTE 418 (498)
Q Consensus 352 --~~~~~viVIaaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~----~~l~~~~~~~~~~l~~La~~t~ 418 (498)
....++.+|++|+.+- .+.+.+..|+ ..+.+.+|+..+|.+-+. +++..... ....
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~----------~~~~ 410 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAA----------ALRL 410 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHH----------HcCC
Confidence 1123467898988742 1333444455 346778888888775333 33322110 0012
Q ss_pred CCcHHHHHH-------HHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 419 GYSGSDIRL-------VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 419 g~s~~dL~~-------L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
++++..+.. |.++.|++++|++.+.++.......... ...|+.+|+...+
T Consensus 411 ~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~---~~~I~~~~l~~~~ 467 (526)
T TIGR02329 411 PDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMP---AGALTPDVLRALA 467 (526)
T ss_pred CCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCC---CCccCHHHhhhhc
Confidence 467777766 9999999999999999998765432110 1237888865443
No 125
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.52 E-value=1.3e-14 Score=156.62 Aligned_cols=207 Identities=23% Similarity=0.247 Sum_probs=132.4
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHH--------h---CCeEEEEe
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--------C---KTTFFNIS 283 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~--------l---~~~~i~v~ 283 (498)
..|++|+|.+..++.+++.+.. ......+|||+|++||||+++|++|++. + +.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~----------~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL----------YARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------HhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5799999999999999988754 2344578999999999999999999988 3 67999999
Q ss_pred ccccchh-----cccCcH--------HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 284 ASSVVSK-----WRGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 284 ~s~l~~~-----~~G~~~--------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
|+.+... ..|..+ .....+|+.+. .++|||||++.|... ++..|+..++.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------LQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence 9876432 111110 11123455444 368999999998654 445566665432
Q ss_pred --------ccCCCcEEEEEEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHH----HHHhcCCCCCCCCCCHH
Q 010888 351 --------TQSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAM----FESLLPSQTGEESLPYD 411 (498)
Q Consensus 351 --------~~~~~~viVIaaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~I----L~~~l~~~~~~~~~~l~ 411 (498)
.....++.+|++||..- .+.+.+..|+ ..+.+.+|...+|.+- +++++..........
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~-- 426 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAP-- 426 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence 11223578999998741 1223344455 3467788888887753 333332210000000
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 412 LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 412 ~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
+.....++....+..|.++.|++++|++.+.+++.....
T Consensus 427 -~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 427 -FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred -CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 111112233345578999999999999999998765543
No 126
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.2e-13 Score=146.86 Aligned_cols=192 Identities=18% Similarity=0.144 Sum_probs=128.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS------ 283 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~------ 283 (498)
...++.+|++|+|++.+++.|...+.. ...++++||+||+|+|||++|+.+|+.+.+.....+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 345678999999999999999988743 234578999999999999999999999865321111
Q ss_pred -------ccccchh-------c---ccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 284 -------ASSVVSK-------W---RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 284 -------~s~l~~~-------~---~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
|..+... . ....-..++.+.+.+.. ....|++|||+|.|. ....+.
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------~~a~na 151 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------TAAFNA 151 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------HHHHHH
Confidence 1000000 0 00123345666665543 235799999998884 234667
Q ss_pred HHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCc
Q 010888 343 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYS 421 (498)
Q Consensus 343 Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s 421 (498)
|+..++.. ...+.+|.+|+.++.+.+.+++|+ ..+.|+.++.++...+++..+.......+ ..++.++..+.| +
T Consensus 152 LLKtLEeP---p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-d 226 (598)
T PRK09111 152 LLKTLEEP---PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-S 226 (598)
T ss_pred HHHHHHhC---CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88887732 334566667777777888899999 56999999999999999988876655433 234445555554 4
Q ss_pred HHHHHHHHH
Q 010888 422 GSDIRLVSK 430 (498)
Q Consensus 422 ~~dL~~L~~ 430 (498)
.+++..++.
T Consensus 227 lr~al~~Ld 235 (598)
T PRK09111 227 VRDGLSLLD 235 (598)
T ss_pred HHHHHHHHH
Confidence 444444433
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=4.6e-13 Score=143.98 Aligned_cols=189 Identities=19% Similarity=0.188 Sum_probs=128.6
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 277 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~------------ 277 (498)
...++.+|++++|++.+++.|+..+.. ...++.+||+||+|+|||++|+++++.+.+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 346788999999999999999988743 133456799999999999999999998732
Q ss_pred ------------eEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 278 ------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 278 ------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
.++.++++.- ..-..++.+...... ....|++|||+|.|. ...++
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-------------~~A~N 135 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-------------KEAFN 135 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHHH
Confidence 1333332210 012345555443321 223699999999884 33567
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~ 420 (498)
.|+..++.. ...+.+|.+|+.+..+.+++++|+ ..++|..++.++-...++..+...+...+ ..+..++....|
T Consensus 136 ALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G- 210 (535)
T PRK08451 136 ALLKTLEEP---PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG- 210 (535)
T ss_pred HHHHHHhhc---CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788888743 334566667777889999999998 57899999999988888888766554432 234455555544
Q ss_pred cHHHHHHHHHHHH
Q 010888 421 SGSDIRLVSKEAA 433 (498)
Q Consensus 421 s~~dL~~L~~~A~ 433 (498)
+.+++..+++.+.
T Consensus 211 dlR~alnlLdqai 223 (535)
T PRK08451 211 SLRDTLTLLDQAI 223 (535)
T ss_pred cHHHHHHHHHHHH
Confidence 4455555544433
No 128
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.51 E-value=2.5e-13 Score=139.13 Aligned_cols=202 Identities=20% Similarity=0.178 Sum_probs=136.6
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh--
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-- 290 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~-- 290 (498)
.+++++|.+...+.+.+.+... .....+|||+|++||||+++|++|+... +.||+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3678999999999998887542 3445789999999999999999999876 479999999876421
Q ss_pred ---cccCcH-------HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------c
Q 010888 291 ---WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 352 (498)
Q Consensus 291 ---~~G~~~-------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 352 (498)
..|... ......+..+ ..++|||||+|.|... ++..|+..++.-. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 111110 0011223333 3478999999998644 4555666664321 1
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH-----hcCC
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER-----TEGY 420 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~-----t~g~ 420 (498)
...++.||++|+.. ..+.+.+..||. .+.+.+|...+|.+-+..++.. -+..++.. ..++
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~-------fl~~~~~~~~~~~~~~~ 209 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEH-------FAIQMCRELGLPLFPGF 209 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHH-------HHHHHHHHhCCCCCCCC
Confidence 12247888888764 235677777884 3677788888876644333211 11222222 2478
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 421 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 421 s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
++..+..|.++.|++++|++.+.++......
T Consensus 210 s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 210 TERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998766543
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=8.3e-13 Score=140.70 Aligned_cols=175 Identities=19% Similarity=0.189 Sum_probs=120.2
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
..++.+|++|+|++.+++.|...+.. ...++.+||+||||+|||++|+++|+.+.+.
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 45678999999999999999988743 1334679999999999999999999988432
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.+++... . .-..++.+.+... ...+.|++|||+|.+.. ...+
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-------------~~~n 139 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-------------EAFN 139 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-------------HHHH
Confidence 222222111 0 1122333222221 24568999999998842 2456
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
.|+..++.. ...+++|.+|+.+..+.+.+++|+ ..++|+.++.++....++..++..+...+ ..+..++..+.|
T Consensus 140 ~LLk~lEep---~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEP---PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcC---CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888742 334667777788888999999999 56899999999988888887765544322 234555555543
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=7.2e-13 Score=137.96 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=120.8
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA------ 284 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~------ 284 (498)
..++.+|++++|++.+++.+.+.+.. ...++++|||||||+|||++|+++++.+..+.....+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 46788999999999999999988754 1334689999999999999999999988542211100
Q ss_pred -cccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 285 -SSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 285 -s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
.++. .........++.+++.+.. ..+.||+|||+|.+.. ...+.++..++. .....++
T Consensus 79 ~~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-------------~~~~~ll~~le~---~~~~~~~ 141 (367)
T PRK14970 79 IFELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-------------AAFNAFLKTLEE---PPAHAIF 141 (367)
T ss_pred eEEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-------------HHHHHHHHHHhC---CCCceEE
Confidence 0110 0011123455566665432 2357999999987742 234567666653 2233456
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
|.+|+.+..+.+++.+|+ ..+.++.|+.++...++...+....... +..++.++..+.
T Consensus 142 Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~ 200 (367)
T PRK14970 142 ILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD 200 (367)
T ss_pred EEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 666777788999999999 4689999999999988888776655432 233455555544
No 131
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.49 E-value=9e-14 Score=154.82 Aligned_cols=220 Identities=18% Similarity=0.182 Sum_probs=144.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 289 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~ 289 (498)
+..+|++++|.+...+++.+.+... .....+|||+|++||||+++|++|++.+ +.||+.++|+.+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3567999999999888888877542 3345679999999999999999999977 47999999987642
Q ss_pred h-----cccCc----HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------c
Q 010888 290 K-----WRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 352 (498)
Q Consensus 290 ~-----~~G~~----~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 352 (498)
. ..|.. .......|+. ...++|||||++.|... ++..|+..++.-. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 1 22211 0000112222 23578999999998654 4455666654321 1
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH---hcCCcH
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER---TEGYSG 422 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~---t~g~s~ 422 (498)
...++.+|+||+.. ..+.+.+.-|+ ..+.+.+|...+|.+-+..++.. -+..++.. ..++++
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~-------~l~~~~~~~~~~~~~s~ 525 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNN-------KLRSLEKRFSTRLKIDD 525 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHH-------HHHHHHHHhCCCCCcCH
Confidence 11257789998874 12344444455 34778888888886533333211 12222222 125899
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 423 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 423 ~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
..+..|.++.|++++|++.+.++......+.. .|+.+|+...+.
T Consensus 526 ~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~------~i~~~~lp~~~~ 569 (638)
T PRK11388 526 DALARLVSYRWPGNDFELRSVIENLALSSDNG------RIRLSDLPEHLF 569 (638)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHhCCCC------eecHHHCchhhh
Confidence 99999999999999999999999866544332 277777766553
No 132
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=9.2e-13 Score=138.54 Aligned_cols=182 Identities=17% Similarity=0.181 Sum_probs=117.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE--------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-------- 281 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~-------- 281 (498)
...++.+|++|+|++.+++.|+..+.. ...++.+||+||||+|||++|+++|+.+.+.-..
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 346788999999999999999887743 1334679999999999999999999999652100
Q ss_pred --Eeccc------cc-------hhccc---CcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 282 --ISASS------VV-------SKWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 282 --v~~s~------l~-------~~~~G---~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
-.|.. +. ..+.+ ..-..++.+.+.+.. ....|++|||+|.+.. ..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-------------~~ 143 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-------------AA 143 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-------------HH
Confidence 01100 00 00111 112344554444421 2346999999998842 23
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.+.|+..++. .....++|.+|+.+..+.+.+++|+. .++|+.++.++-...++..++...... +..++.++..+.
T Consensus 144 ~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 144 FNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4567777763 22335555566677788889999994 689999999888888888776544332 223444555554
Q ss_pred C
Q 010888 419 G 419 (498)
Q Consensus 419 g 419 (498)
|
T Consensus 220 g 220 (397)
T PRK14955 220 G 220 (397)
T ss_pred C
Confidence 3
No 133
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.49 E-value=2.3e-14 Score=156.28 Aligned_cols=213 Identities=25% Similarity=0.280 Sum_probs=142.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+..++++++|.+...+++.+.+... .....+|||+|++||||+++|++|+..+ +.||+.++|+.+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVV----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34578999999999999999887542 3445789999999999999999999986 5799999998764
Q ss_pred hhc-----ccCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc-----
Q 010888 289 SKW-----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----- 351 (498)
Q Consensus 289 ~~~-----~G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----- 351 (498)
... .|.... .....+.. ...++|||||++.|... .+..|+..++.-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECC
Confidence 321 111000 00111222 23478999999998644 4555666664321
Q ss_pred ---cCCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHh
Q 010888 352 ---QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 417 (498)
Q Consensus 352 ---~~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~~l~~La~~t 417 (498)
....++.+|++|+.. ..+.+.+..|+. .+.+.+|...+|.+ ++++++. .++...
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~-----------~~~~~~ 391 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLE-----------KFNREN 391 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHH-----------HHHHHc
Confidence 111247888888764 224556666663 35666777666654 3333332 222211
Q ss_pred ---cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH
Q 010888 418 ---EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 468 (498)
Q Consensus 418 ---~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~ 468 (498)
.++++..+..|.++.|++++|++.+.++.......+.. |+.+|+.
T Consensus 392 ~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~~~------I~~~~l~ 439 (534)
T TIGR01817 392 GRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGT------ITRSDFS 439 (534)
T ss_pred CCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc------ccHHHCc
Confidence 36899999999999999999999999998765544332 7777764
No 134
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=6.6e-13 Score=148.70 Aligned_cols=205 Identities=20% Similarity=0.224 Sum_probs=137.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-----hccc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWRG 293 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-----~~~G 293 (498)
.|+|++++++.+.+.+....... .....|..++||+||||||||.+|+++|+.++.+++.++++++.. ...|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 47999999999999886532110 111234457999999999999999999999999999999987642 2222
Q ss_pred CcHHH-----HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--cc------CCCcEEEE
Q 010888 294 DSEKL-----IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------SDELVFVL 360 (498)
Q Consensus 294 ~~~~~-----l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~------~~~~viVI 360 (498)
..... -..+.+..+....+||||||+|.+.+ .+.+.|+..++.- .. .-.++++|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-------------HHHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 11111 11233344555669999999999853 3677788887632 11 12457889
Q ss_pred EEeCCC-------------------------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC-------CCCCCCC
Q 010888 361 AATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------QTGEESL 408 (498)
Q Consensus 361 aaTn~p-------------------------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~-------~~~~~~~ 408 (498)
+|||.- ..+.|+++.|++.++.|++.+.++...|+...+.. .......
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~ 682 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEV 682 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceE
Confidence 999832 12668999999999999999999999998766532 1222111
Q ss_pred ---CHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 010888 409 ---PYDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 409 ---~l~~La~~t--~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.++.|++.. ..+-.+.|+.+++.-....+.+
T Consensus 683 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 683 SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred CHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 234455432 2345677777777666666554
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.49 E-value=1.2e-12 Score=130.23 Aligned_cols=134 Identities=25% Similarity=0.293 Sum_probs=93.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc------cchhcccCcHHHH-H-------------------HHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKLI-K-------------------VLFE 304 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~------l~~~~~G~~~~~l-~-------------------~~f~ 304 (498)
..++||.||||||||++|+++|+.+|.+++.++|.. +.+.+.+...... . ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 468999999999999999999999999999998753 3333322211111 1 0111
Q ss_pred HHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc-------------cCCCcEEEEEEeCCCC----
Q 010888 305 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------------QSDELVFVLAATNLPW---- 367 (498)
Q Consensus 305 ~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------------~~~~~viVIaaTn~p~---- 367 (498)
.|.. .+.+|+|||++.+.++ +++.|+..++.-. ....+..||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2222 3469999999987533 4555666664311 0113567899999762
Q ss_pred -CCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 368 -ELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 368 -~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
.+++++++|| ..+.++.|+.++..+|++.+.
T Consensus 167 ~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 5789999999 678999999999999999875
No 136
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.48 E-value=1.5e-12 Score=132.37 Aligned_cols=175 Identities=25% Similarity=0.244 Sum_probs=116.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~ 284 (498)
....+.+|++++|++++++.+...+... ...+++|+||||||||++++++++++. ..++.+++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 3456789999999999999999887431 123689999999999999999999873 34555554
Q ss_pred cccchhcccCcHHHHHHHH-HHHHh-----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 285 SSVVSKWRGDSEKLIKVLF-ELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f-~~a~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
++..+ ...++..+ ..+.. ..+.+|+|||+|.+... ..+.|...++.... ...
T Consensus 77 ~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~---~~~ 134 (319)
T PRK00440 77 SDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ---NTR 134 (319)
T ss_pred ccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC---CCe
Confidence 43211 11122222 22211 23469999999988432 23445556654322 244
Q ss_pred EEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcC
Q 010888 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 419 (498)
Q Consensus 359 VIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g 419 (498)
+|.++|.+..+.+++.+|+. .+.+++++.++...+++.++....... +..++.+++.+.|
T Consensus 135 lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 135 FILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred EEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 56677777788888999985 589999999999999998887655432 2234555555443
No 137
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=9.2e-13 Score=140.32 Aligned_cols=169 Identities=13% Similarity=0.200 Sum_probs=110.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccccchhcccCcHH---HHHHHHHHHHhcCCeEEEEcCccch
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~l~~~~~G~~~~---~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
.++++|||++|+|||+|++++++++ +..++++++.++...+...... .+...... -..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3579999999999999999999965 4788899998877665433221 12222122 234679999999988
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC---CCCHHHHhccc--ceeEecCCCHHHHHHHHHH
Q 010888 323 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE--KRILVPLPDTEARRAMFES 397 (498)
Q Consensus 323 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~ 397 (498)
..+ ....+.|+..++.....+. .+|+++...|. .+++++.+||. ..+.+..|+.++|.+|++.
T Consensus 219 ~~k-----------~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 219 SYK-----------EKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred cCC-----------HHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 543 2234455555554443333 33443333443 36789999995 5567788999999999999
Q ss_pred hcCCCCC---CCCCCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010888 398 LLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAM 434 (498)
Q Consensus 398 ~l~~~~~---~~~~~l~~La~~t~g~s~~dL~~L~~~A~~ 434 (498)
.++.... -.+..++.|+..+.| +.+.+..++.....
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 9876543 122234556666654 56667666665543
No 138
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.47 E-value=1.8e-13 Score=148.34 Aligned_cols=204 Identities=21% Similarity=0.199 Sum_probs=138.3
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 291 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~- 291 (498)
.+.+++|.+..++.+.+.+.. ....+.+|||+|++||||+++|++|+..+ +.||+.++|+.+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 578999999999999988754 34456789999999999999999999986 5799999998774321
Q ss_pred ----ccCcH-------HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------cc
Q 010888 292 ----RGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ 352 (498)
Q Consensus 292 ----~G~~~-------~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~ 352 (498)
.|... ......++.+ ..++|||||+|.|... ++..|+..++.- ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 11100 0011233333 3478999999999654 444555555421 11
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHH----HhcCCc
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE----RTEGYS 421 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~----~t~g~s 421 (498)
...++.+|++|+.. ..+.+.+..|+. .+.+.+|+..+|.+-+..++.. -+..++. ...+++
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~-------fl~~~~~~~~~~~~~~s 390 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGY-------FLEQNRARLGLRSLRLS 390 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHH-------HHHHHHHHcCCCCCCCC
Confidence 22357899999874 124555655663 4677888888887543332211 1222232 224689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCC
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 453 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~ 453 (498)
+..+..|.++.|++++|++.+.++.....+..
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999887654443
No 139
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.2e-12 Score=133.64 Aligned_cols=229 Identities=19% Similarity=0.244 Sum_probs=141.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----EEEEecccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSV 287 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~-----~i~v~~s~l 287 (498)
+...-+.+.+.++..+++...+...+. ...|.+++++||||||||.+++.+++++..+ +++|||...
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC
Confidence 344455689999999999987655432 2334569999999999999999999998433 899999665
Q ss_pred chhc---------------ccCcH-HHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 288 VSKW---------------RGDSE-KLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 288 ~~~~---------------~G~~~-~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
.+.+ .|... .....+++.... ....||+|||+|.|....+ .+ |+..+...
T Consensus 84 ~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~---LY~L~r~~ 150 (366)
T COG1474 84 RTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EV---LYSLLRAP 150 (366)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hH---HHHHHhhc
Confidence 4321 12222 223333333333 4467999999999976522 23 33333322
Q ss_pred ccCCCcEEEEEEeCCCC---CCCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCCCCCC--CCCHHHHHHHhcCCcHHH
Q 010888 351 TQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEE--SLPYDLLVERTEGYSGSD 424 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p~---~Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~~~--~~~l~~La~~t~g~s~~d 424 (498)
......+.+|+.+|..+ .+++.+.+++. ..+.|++++.+|...|++.+........ +.+.-.++....+..
T Consensus 151 ~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~--- 227 (366)
T COG1474 151 GENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAE--- 227 (366)
T ss_pred cccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHc---
Confidence 22355688999999873 58999999773 5589999999999999999986543222 122222222211112
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 425 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 425 L~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
.+.+|+.+..+..+.+++..+..+. ++.+++..|...+.+.
T Consensus 228 ---------~GDAR~aidilr~A~eiAe~~~~~~---v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 228 ---------SGDARKAIDILRRAGEIAEREGSRK---VSEDHVREAQEEIERD 268 (366)
T ss_pred ---------CccHHHHHHHHHHHHHHHHhhCCCC---cCHHHHHHHHHHhhHH
Confidence 2233444444444444433333322 7778877775555443
No 140
>PRK05642 DNA replication initiation factor; Validated
Probab=99.46 E-value=4.5e-12 Score=123.96 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=100.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~ 328 (498)
.+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCC---
Confidence 679999999999999999999865 6778888887765321 122223332 368999999987543
Q ss_pred cchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCC
Q 010888 329 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 403 (498)
Q Consensus 329 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~ 403 (498)
......|+..++.....+ ..++++++..|.. ..+.+++||. ..+.+..|+.+++..+++..+....
T Consensus 113 --------~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 113 --------ADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------hHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 122344555555443333 3556666655533 4689999994 5566788999999999996655443
Q ss_pred CCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 404 GEE-SLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 404 ~~~-~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
... +..++.|+++..+ +.+.+..++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 322 2234445555443 4444444443
No 141
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.46 E-value=3.5e-14 Score=146.66 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=135.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVV 288 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~ 288 (498)
....+++++|.+...+++.+.+.. ..+...+|||+|++||||+++|+.|+... +.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 345689999999999999888754 34556789999999999999999998654 5799999998764
Q ss_pred hh-------------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC------
Q 010888 289 SK-------------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------ 349 (498)
Q Consensus 289 ~~-------------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~------ 349 (498)
.. +.| .......+|+.|.+ ++||+|||..+++. .+..|+..++.
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRV 205 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhCCHh-------------HHHHHHHHHHcCceEec
Confidence 32 222 22223445665554 68999999999765 33445555543
Q ss_pred --CccCCCcEEEEEEeCCCCCCCHHHHh------cccceeEecCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHh
Q 010888 350 --LTQSDELVFVLAATNLPWELDAAMLR------RLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 417 (498)
Q Consensus 350 --~~~~~~~viVIaaTn~p~~Ld~al~~------Rf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~~l~~La~~t 417 (498)
-.....+|.+|+||+. .++.+++. |. ..+.+.+|+..+|.. ++++++.........+ .
T Consensus 206 G~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~-------~ 275 (403)
T COG1221 206 GGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLP-------L 275 (403)
T ss_pred CCCCCcCCCceeeecccc--CHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCC-------C
Confidence 2334557999999987 44544444 23 345667787777754 3333332211111100 1
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 418 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 418 ~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
...++..++.|..+.|++++|++.|.++......
T Consensus 276 ~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 276 SVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred CCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 2234667888999999999999999888776544
No 142
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.46 E-value=3e-13 Score=151.71 Aligned_cols=203 Identities=23% Similarity=0.281 Sum_probs=137.5
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 290 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~ 290 (498)
+..|++++|.+..++.+.+.+... .....+|||+|++|||||++|++|+..+ +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 467889999999999998877542 3345689999999999999999999876 579999999876422
Q ss_pred -----cccC--------cHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC-------
Q 010888 291 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------- 350 (498)
Q Consensus 291 -----~~G~--------~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------- 350 (498)
..|. ... ....++.+ ..++|||||++.+... ++..|+..++.-
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~-~~g~le~a---~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQ-RIGRFELA---DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccc-hhhHHHhc---CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence 1111 111 12233333 3478999999998644 445555555421
Q ss_pred -ccCCCcEEEEEEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hc
Q 010888 351 -TQSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TE 418 (498)
Q Consensus 351 -~~~~~~viVIaaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~ 418 (498)
.....++.+|++|+.+- .+...+..|+ ..+.+.+|+..+|.+-+..++.. -+..++.+ ..
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~-------~l~~~~~~~~~~~~ 576 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKA-------FTFKIARRMGRNID 576 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHH-------HHHHHHHHcCCCCC
Confidence 11224578899998741 2344455555 34678889888887644333211 11222322 23
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccC
Q 010888 419 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 451 (498)
Q Consensus 419 g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~ 451 (498)
++++..++.|.++.|++++|++.+.++......
T Consensus 577 ~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 577 SIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 689999999999999999999999988776443
No 143
>PRK08727 hypothetical protein; Validated
Probab=99.46 E-value=4.3e-12 Score=124.00 Aligned_cols=172 Identities=21% Similarity=0.222 Sum_probs=105.3
Q ss_pred CCCCCCccccCcH-HHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 212 SPDVKWESIKGLE-NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 212 ~~~~~~~~IvG~~-~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
.+..+|+++++.. +....+..... ......++|+||+|||||++++++++++ +....+++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~------------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAA------------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHh------------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 3556788876544 34333332221 1122459999999999999999998876 566677776553
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC-CC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn-~p 366 (498)
.. .+...++... ...+|+|||++.+..... ....++..++.....+ ..+|.|+| .|
T Consensus 81 ~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~-----------~~~~lf~l~n~~~~~~--~~vI~ts~~~p 137 (233)
T PRK08727 81 AG--------RLRDALEALE--GRSLVALDGLESIAGQRE-----------DEVALFDFHNRARAAG--ITLLYTARQMP 137 (233)
T ss_pred hh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-----------HHHHHHHHHHHHHHcC--CeEEEECCCCh
Confidence 32 2223333332 347999999998864321 1223334444332222 22444554 55
Q ss_pred CC---CCHHHHhcc--cceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 367 WE---LDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 367 ~~---Ld~al~~Rf--~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.. +.+++++|| ...+.++.|+.+++..+++.++....... +..++.|++++.
T Consensus 138 ~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~ 195 (233)
T PRK08727 138 DGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGE 195 (233)
T ss_pred hhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 54 478999997 46688999999999999998765544432 223555666655
No 144
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.4e-12 Score=138.40 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=120.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE--------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-------- 281 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~-------- 281 (498)
+..++.+|++|+|++.+++.|+..+.. ..-++++||+||+|||||++|+.+|+.+.+.--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 346788999999999999999987643 1334679999999999999999999999662100
Q ss_pred --Eeccc------cc-------hhccc---CcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHH
Q 010888 282 --ISASS------VV-------SKWRG---DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 339 (498)
Q Consensus 282 --v~~s~------l~-------~~~~G---~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 339 (498)
-.|.. +. ..+.| ..-..++.+.+.+. .....|++|||+|.+.. ..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-------------~a 143 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-------------AA 143 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-------------HH
Confidence 01100 00 00111 11234455444442 22346999999998842 23
Q ss_pred HHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhc
Q 010888 340 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 418 (498)
Q Consensus 340 ~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~ 418 (498)
.+.|+..++.. ...+++|.+|+.+..+.+.+++|+ ..+.|..++.++-...++..+....... +..++.++..+.
T Consensus 144 ~naLLK~LEeP---p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 144 FNAFLKTLEEP---PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 56788888743 233555556667788888999999 6699999999998888887776544332 223455565555
Q ss_pred C
Q 010888 419 G 419 (498)
Q Consensus 419 g 419 (498)
|
T Consensus 220 G 220 (620)
T PRK14954 220 G 220 (620)
T ss_pred C
Confidence 4
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.2e-12 Score=140.79 Aligned_cols=175 Identities=21% Similarity=0.234 Sum_probs=123.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
..++.+|++++|++.+++.|...+... ...+++||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 456788999999999999999887541 223579999999999999999999998652
Q ss_pred --------------EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 279 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 279 --------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
++.++.. .+.....++.+++.+.. ....|++|||+|.|. ....
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-------------~~a~ 138 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-------------TAAF 138 (620)
T ss_pred cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-------------HHHH
Confidence 1222211 12334566777666543 234699999999884 2356
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
+.|+..++. ....+++|.+|+.+..+.+.+++|+ ..+.|+.++.++-...++.++.......+ ..+..+++.+.|
T Consensus 139 naLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 139 NALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 778888873 3334667777778888889999999 55889888888877777776655443322 235556666655
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=2.7e-12 Score=144.86 Aligned_cols=204 Identities=22% Similarity=0.239 Sum_probs=136.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-------
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~------- 290 (498)
+.|+|++++++.+.+.+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 35789999999998877542110 01112344468999999999999999999999999999999876432
Q ss_pred -----cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcE
Q 010888 291 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 357 (498)
Q Consensus 291 -----~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~v 357 (498)
|+|... ...+.+..+....+||+|||+|.+.+ .+.+.|++.++.-. ..-.++
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP-------------DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH-------------HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 222211 12244455566779999999998753 36677888776421 112357
Q ss_pred EEEEEeCCCC-------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-------CCC
Q 010888 358 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 405 (498)
Q Consensus 358 iVIaaTn~p~-------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~ 405 (498)
++|+|||... .+.|+++.|++..+.|.+.+.++...|++..+... ...
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7888887631 15778889999999999999999999998877431 111
Q ss_pred ---CCCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 010888 406 ---ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 406 ---~~~~l~~La~~--t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.+..++.|++. ...+..+.|+.+++......+.+
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 11123445553 23455677777766666555543
No 147
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.1e-12 Score=140.71 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=123.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE----------
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---------- 279 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~---------- 279 (498)
...++.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+.+|+.+.+..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4567889999999999999998877431 2345689999999999999999999885321
Q ss_pred ---------------EEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 280 ---------------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 280 ---------------i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
+.++.+. ...-..++.+.+.+.. ....|++|||+|.|.. ...
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~a~ 137 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------AAF 137 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------HHH
Confidence 2222210 1122334444443332 2346999999998742 245
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 419 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g 419 (498)
+.|+..++.. ...+++|.+++.++.+.+.+++|+ ..+.|+.++..+...+++..+.......+ ..+..++..+.|
T Consensus 138 naLLk~LEep---p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 138 NALLKTLEEP---PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHHhcC---CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6677777743 233556666777777888999998 45889999999988888888766544322 224455555554
Q ss_pred CcHHHHHHHHH
Q 010888 420 YSGSDIRLVSK 430 (498)
Q Consensus 420 ~s~~dL~~L~~ 430 (498)
+.+++.++++
T Consensus 214 -dlr~al~~Le 223 (585)
T PRK14950 214 -SMRDAENLLQ 223 (585)
T ss_pred -CHHHHHHHHH
Confidence 4444443333
No 148
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.42 E-value=2.1e-12 Score=131.99 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=103.5
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeE--EEEe
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNIS 283 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~--i~v~ 283 (498)
....|++|+|++++++.+.-.+.. ....++||.|+||||||++|+++++.+ +.++ ..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 357799999999999988854422 122689999999999999999999988 3321 1110
Q ss_pred cc---------cc---------------chhcccC--cHHHH-HH--HHHHH--HhcCCeEEEEcCccchhhhccccchh
Q 010888 284 AS---------SV---------------VSKWRGD--SEKLI-KV--LFELA--RHHAPSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 284 ~s---------~l---------------~~~~~G~--~~~~l-~~--~f~~a--~~~~p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
+. .+ .....|. .+..+ .. .|..- .....++|||||++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 00 00 0001111 00000 00 01100 011236999999998853
Q ss_pred hHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCCC-CCCHHHHhcccceeEecCCCH-HHHHHHHHHhc
Q 010888 333 HEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRAMFESLL 399 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p~-~Ld~al~~Rf~~~i~~~~Pd~-~eR~~IL~~~l 399 (498)
.+++.|+..|+.-. ....++++++++|..+ .++++++.||...+.++.|.. ++|.++++...
T Consensus 143 -----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 -----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred -----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 35666777775321 1234578888888654 589999999999999988865 88999998754
No 149
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.42 E-value=4.4e-12 Score=112.00 Aligned_cols=138 Identities=40% Similarity=0.629 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcHHH
Q 010888 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL 298 (498)
Q Consensus 222 G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~~~ 298 (498)
|.+...+.+...+.. ....+++|+||||||||++++.+++.+ +.+++.+++.+............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 455666666665422 234689999999999999999999998 88999999877654432211111
Q ss_pred ---HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc---CCCcEEEEEEeCCCC--CCC
Q 010888 299 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---SDELVFVLAATNLPW--ELD 370 (498)
Q Consensus 299 ---l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---~~~~viVIaaTn~p~--~Ld 370 (498)
............+.+|+|||++.+... ....++..+..... ....+.+|+++|... .++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHH-------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 112233344556799999999987321 22334444443322 134577888888776 688
Q ss_pred HHHHhcccceeEec
Q 010888 371 AAMLRRLEKRILVP 384 (498)
Q Consensus 371 ~al~~Rf~~~i~~~ 384 (498)
+.+.+||...+.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998766654
No 150
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.41 E-value=4.6e-12 Score=131.39 Aligned_cols=196 Identities=17% Similarity=0.258 Sum_probs=130.9
Q ss_pred CCCCCCCccccCcHH---HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEE
Q 010888 211 GSPDVKWESIKGLEN---AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 282 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~---~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v 282 (498)
-.+.++|++++.-.. +......+...+ ..+...++||||+|.|||+|++|++++. +..++++
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc----------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec
Confidence 457788999865333 333333332221 2245679999999999999999999987 4568888
Q ss_pred eccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
+...+...++......-..-|+.-. .-.+|+|||++.+.++ ...+.++...++.+...+. -+|+++
T Consensus 150 ~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk-----------~~~qeefFh~FN~l~~~~k-qIvlts 215 (408)
T COG0593 150 TSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK-----------ERTQEEFFHTFNALLENGK-QIVLTS 215 (408)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC-----------hhHHHHHHHHHHHHHhcCC-EEEEEc
Confidence 8887766655433332233344444 4478999999999765 3345667777766655554 445655
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 431 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~ 431 (498)
...|.. +.+.+++||. ..+.+.+|+.+.|..||+..+.......+.+ +.-++.+.. -+.+++..++..
T Consensus 216 dr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~ 289 (408)
T COG0593 216 DRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNR 289 (408)
T ss_pred CCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 566655 5689999985 4567788999999999999887776664443 444566554 355666655544
No 151
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.41 E-value=7.1e-12 Score=128.52 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=106.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CeEEEEec
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISA 284 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-------~~~i~v~~ 284 (498)
.+...|++|+|++++|..|...+..| ...++||.|++|||||++||++++.+. .||. ..+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 45678999999999999999876543 236899999999999999999988762 2332 000
Q ss_pred -------cccchhc-------------------ccCcHHHH------HHHHHHH---------HhcCCeEEEEcCccchh
Q 010888 285 -------SSVVSKW-------------------RGDSEKLI------KVLFELA---------RHHAPSTIFLDEIDAII 323 (498)
Q Consensus 285 -------s~l~~~~-------------------~G~~~~~l------~~~f~~a---------~~~~p~VL~IDEiD~l~ 323 (498)
++..+.. .|.++..+ ...+... .....++|||||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0000000 11122211 1111111 01224799999999886
Q ss_pred hhccccchhhHHHHHHHHHHHHHhhC---------Cc-cCCCcEEEEEEeCCCC-CCCHHHHhcccceeEecCCC-HHHH
Q 010888 324 SQRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPD-TEAR 391 (498)
Q Consensus 324 ~~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~viVIaaTn~p~-~Ld~al~~Rf~~~i~~~~Pd-~~eR 391 (498)
+. +++.|+..|+. .+ ....++++|+|.|..+ .+.+++..||...+.+..|+ .+.+
T Consensus 158 ~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 158 DH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred HH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHH
Confidence 44 45556666643 11 1234577777777654 59999999999999999997 6999
Q ss_pred HHHHHHhc
Q 010888 392 RAMFESLL 399 (498)
Q Consensus 392 ~~IL~~~l 399 (498)
.+|++...
T Consensus 225 ~~il~~~~ 232 (350)
T CHL00081 225 VKIVEQRT 232 (350)
T ss_pred HHHHHhhh
Confidence 99998864
No 152
>PRK06620 hypothetical protein; Validated
Probab=99.40 E-value=8.7e-12 Score=120.25 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=103.7
Q ss_pred CCCCCCccccCcH---HHHHHHHHHHhccccCchhhccCCCC-CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 212 SPDVKWESIKGLE---NAKRLLKEAVVMPIKYPKYFTGLLSP-WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 212 ~~~~~~~~IvG~~---~~k~~L~~~i~~~l~~~~~~~~~~~~-~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.+..+|++++--+ .+...++++...+ ...+ .+.++||||||||||||++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4667888876533 3555555543211 0122 2679999999999999999999988753322 1110
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
. ...+ ....+|+|||+|.+- . ..+...++.+...+. .++++++..|.
T Consensus 79 -------~----~~~~-----~~~d~lliDdi~~~~-------------~---~~lf~l~N~~~e~g~-~ilits~~~p~ 125 (214)
T PRK06620 79 -------N----EEIL-----EKYNAFIIEDIENWQ-------------E---PALLHIFNIINEKQK-YLLLTSSDKSR 125 (214)
T ss_pred -------c----hhHH-----hcCCEEEEeccccch-------------H---HHHHHHHHHHHhcCC-EEEEEcCCCcc
Confidence 0 0111 123789999998441 1 123333333323333 56777776664
Q ss_pred C--CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 368 E--LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 368 ~--Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
. + +++++|+. ..+.+..|+.+++..+++..+....... +..++.|+++..+ +.+.+..++.
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~ 191 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILE 191 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHH
Confidence 4 6 88999995 2588899999999999998877554432 2234556665543 3344443333
No 153
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.38 E-value=2e-12 Score=137.70 Aligned_cols=198 Identities=19% Similarity=0.212 Sum_probs=139.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE--E-----
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--F----- 280 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~--i----- 280 (498)
+.+.+++.+|++++|++.+.+.|...+..- .-.++.||.||.|||||++||.+|+.+++.- .
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 345678899999999999999999988552 3346899999999999999999999986542 1
Q ss_pred EE-eccccchh-------ccc---CcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH
Q 010888 281 NI-SASSVVSK-------WRG---DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 345 (498)
Q Consensus 281 ~v-~~s~l~~~-------~~G---~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~ 345 (498)
.+ +|.++... +.+ .+-..++.+.+.+. ...+-|.+|||++.|. ....+.||.
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhc
Confidence 00 11111100 011 12234555555543 2345699999998773 557788888
Q ss_pred HhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHH
Q 010888 346 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSD 424 (498)
Q Consensus 346 ~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~d 424 (498)
.++ .+...|.+|.+|..+..+++.++||+ ..+.|..-+.++-...|...+.+..+..+.+ +..+++...| +.+|
T Consensus 142 TLE---EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 142 TLE---EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred ccc---cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 876 45566889999999999999999999 4588888888898888999888777765543 4445555554 5556
Q ss_pred HHHHHHHHHh
Q 010888 425 IRLVSKEAAM 434 (498)
Q Consensus 425 L~~L~~~A~~ 434 (498)
...++..+..
T Consensus 217 alslLDq~i~ 226 (515)
T COG2812 217 ALSLLDQAIA 226 (515)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.8e-11 Score=133.27 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=127.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
..++.+|++|+|++.+++.|...+.. ...++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 35678999999999999999988743 1334679999999999999999999988532
Q ss_pred -------------EEEEeccccchhcccCcHHHHHHHHHHHHhc----CCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 279 -------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 279 -------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
++.+++++ ......++.+...+... ...|++|||+|.|.. ...+
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~n 139 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAFN 139 (614)
T ss_pred hHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HHHH
Confidence 22222211 11233455555555432 245999999998842 3466
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~ 420 (498)
.|+..++.. ...+++|.+|+.+..+-+.+++|+ ..+.|..++.++-...++..+.......+. .+..++..+.|
T Consensus 140 aLLK~LEep---p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 140 AFLKTLEEP---PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHHhCC---CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 788888743 233556666767788999999999 559999999999888888887766554332 35566666654
Q ss_pred cHHHHHHHH
Q 010888 421 SGSDIRLVS 429 (498)
Q Consensus 421 s~~dL~~L~ 429 (498)
+.+++..++
T Consensus 215 dlr~al~~L 223 (614)
T PRK14971 215 GMRDALSIF 223 (614)
T ss_pred CHHHHHHHH
Confidence 334443333
No 155
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=6.5e-11 Score=122.82 Aligned_cols=187 Identities=16% Similarity=0.120 Sum_probs=121.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------------
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 278 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------- 278 (498)
..+.++++|+|++.+++.|.+.+.. ...++.+||+||+|+||+++|.++|+.+-+.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999999988754 2345679999999999999999999987221
Q ss_pred ---------------------EEEEecc--ccchhc-ccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccc
Q 010888 279 ---------------------FFNISAS--SVVSKW-RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEAR 330 (498)
Q Consensus 279 ---------------------~i~v~~s--~l~~~~-~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~ 330 (498)
++.+... +-.++. ..-.-..++.+.+.+. ...+.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0111100 000000 0001223444444332 3457899999999883
Q ss_pred hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCH
Q 010888 331 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY 410 (498)
Q Consensus 331 ~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l 410 (498)
....+.|++.++.. ...+++|.+|+.++.+.+.+++|+ ..+.+++|+.++-..+|...... ..+..+
T Consensus 155 ------~~aanaLLK~LEep---p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 ------ANAANALLKVLEEP---PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred ------HHHHHHHHHHHhcC---CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 34566788888732 234567778888888999999999 56899999999999988876422 111122
Q ss_pred HHHHHHhcCCcHHHHHHHHH
Q 010888 411 DLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 411 ~~La~~t~g~s~~dL~~L~~ 430 (498)
..++..+.|- +.....+..
T Consensus 222 ~~l~~~s~Gs-p~~Al~ll~ 240 (365)
T PRK07471 222 AALAALAEGS-VGRALRLAG 240 (365)
T ss_pred HHHHHHcCCC-HHHHHHHhc
Confidence 4455555554 444444443
No 156
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.35 E-value=3.3e-12 Score=118.50 Aligned_cols=136 Identities=25% Similarity=0.360 Sum_probs=86.8
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh-----c
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-----W 291 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~-----~ 291 (498)
|+|.+..++++.+.+... ...+.+|||+|++||||+++|++|++.+ +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888888888877543 3445789999999999999999999977 579999999876432 1
Q ss_pred ccCc-------HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------ccCCCc
Q 010888 292 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 356 (498)
Q Consensus 292 ~G~~-------~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~ 356 (498)
.|.. ......+++.|.. ++|||||++.|.+. ++..|+..++.- .....+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccccccccc
Confidence 1111 0112245665554 78999999999754 555666666521 112236
Q ss_pred EEEEEEeCCCCCCCHHHHh-cccceeEe
Q 010888 357 VFVLAATNLPWELDAAMLR-RLEKRILV 383 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~-Rf~~~i~~ 383 (498)
+.||++|+. +|...+.+ +|...+++
T Consensus 135 ~RiI~st~~--~l~~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 135 VRIIASTSK--DLEELVEQGRFREDLYY 160 (168)
T ss_dssp EEEEEEESS---HHHHHHTTSS-HHHHH
T ss_pred ceEEeecCc--CHHHHHHcCCChHHHHH
Confidence 899999997 56655555 66554443
No 157
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.34 E-value=4.9e-11 Score=113.75 Aligned_cols=191 Identities=18% Similarity=0.198 Sum_probs=134.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+.+.+.+|+|.+..++.|.+....+.. ..|.++|||+|..|||||.++||+.++. +..+++|+..++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3457899999999999999987765443 4566899999999999999999999988 6789999988774
Q ss_pred hhcccCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC-CccCCCcEEEEEEeCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLP 366 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-~~~~~~~viVIaaTn~p 366 (498)
.+..+++..+.. ..-|||+||+--= . . ..--..|-..++| +..+..+|++.+|+|+.
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSFe-----~---g----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSFE-----E---G----DDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCCC-----C---C----chHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 234455555543 3479999998211 0 1 1112223344554 57778889999999987
Q ss_pred CCCCH----------------------HHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHH----HHHHhcC
Q 010888 367 WELDA----------------------AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTEG 419 (498)
Q Consensus 367 ~~Ld~----------------------al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~----La~~t~g 419 (498)
..++. .+-.||...+.|..++.++-..|+.++++...+..+. .++. -|..-.|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 54331 2334999999999999999999999999887766432 2222 2333445
Q ss_pred CcHHHHHHHHHH
Q 010888 420 YSGSDIRLVSKE 431 (498)
Q Consensus 420 ~s~~dL~~L~~~ 431 (498)
.||+--.+.++.
T Consensus 265 RSGR~A~QF~~~ 276 (287)
T COG2607 265 RSGRVAWQFIRD 276 (287)
T ss_pred CccHhHHHHHHH
Confidence 676655544443
No 158
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=4.4e-11 Score=121.92 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=116.1
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------eEEEEecccc
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------TFFNISASSV 287 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~--------~~i~v~~s~l 287 (498)
+|++|+|++.+++.+...+.. ...++.+||+||+|+|||++|+++|+.+-+ .+..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 589999999999999988743 234467899999999999999999998732 22233221
Q ss_pred chhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 288 VSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
.+. ...-..++.+.+.+. .....|++||++|.+. ....+.|+..++. ++..+++|.+|
T Consensus 69 ~~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-------------~~a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 69 NKK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-------------EQAQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred cCC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-------------HHHHHHHHHHhcC---CCCCeEEEEEe
Confidence 011 112234555554332 2334699999998873 3356778888873 33445666677
Q ss_pred CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 010888 364 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 422 (498)
Q Consensus 364 n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~ 422 (498)
+.++.+.+.+++|+ ..+.|+.|+.++....++...... .+..++.++..+.|-.+
T Consensus 131 ~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 131 ENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred CChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHH
Confidence 78889999999999 579999999999888887654321 12224445555555333
No 159
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=7.8e-11 Score=121.62 Aligned_cols=203 Identities=16% Similarity=0.154 Sum_probs=127.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------eEEEE-e
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNI-S 283 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-------~~i~v-~ 283 (498)
..+..+++|+|++++++.+...+.. ...++.+||+||+|+|||++|+.+|+.+.+ +.... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3567899999999999999998743 233467999999999999999999998854 11100 1
Q ss_pred c---c-----------ccc---hh--c------ccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhH
Q 010888 284 A---S-----------SVV---SK--W------RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE 334 (498)
Q Consensus 284 ~---s-----------~l~---~~--~------~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~ 334 (498)
| . ++. .. . ..-.-..++.+.+... .....|++|||+|.|.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 1 0 000 00 0 0011223344333322 2345799999999884
Q ss_pred HHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 010888 335 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV 414 (498)
Q Consensus 335 ~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La 414 (498)
....+.|+..++.. ...+++|..|+.|..+.+.+++|+ ..+.+++|+.++-..+|+....... ..+..+..++
T Consensus 155 --~~aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 155 --RNAANAILKTLEEP---PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred --HHHHHHHHHHHhcC---CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 33456788888743 233455556777888889999999 6899999999999999987432211 1122244566
Q ss_pred HHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 415 ERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 415 ~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.+.| +++....+.........+.+...+
T Consensus 228 ~~s~G-~pr~Al~ll~~~~~~~~~~~~~~l 256 (351)
T PRK09112 228 QRSKG-SVRKALLLLNYGGLEIIATIDQLL 256 (351)
T ss_pred HHcCC-CHHHHHHHHhcCcHHHHHHHHHHH
Confidence 65555 444444555544444444444443
No 160
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.6e-11 Score=135.56 Aligned_cols=204 Identities=23% Similarity=0.265 Sum_probs=140.1
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeccccchh----
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK---- 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l~~~---- 290 (498)
..++|++++...+.+.+..... -.....+|..++||.||+|+|||.+|+++|..+. ..++.+++|++..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 4689999999999998855221 1122245556789999999999999999999995 88999999998643
Q ss_pred --------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--ccC------C
Q 010888 291 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQS------D 354 (498)
Q Consensus 291 --------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~~------~ 354 (498)
|+|..+. ..+.+..+.++++||++|||++-. ..+.+.|++.+|.- +.. -
T Consensus 568 rLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH-------------pdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 568 RLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH-------------PDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC-------------HHHHHHHHHHhcCCeeecCCCCEEec
Confidence 4443331 235566677778999999998765 44888899998732 221 2
Q ss_pred CcEEEEEEeCCCC----------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC----
Q 010888 355 ELVFVLAATNLPW----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---- 402 (498)
Q Consensus 355 ~~viVIaaTn~p~----------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~---- 402 (498)
.+.+||+|||--. .+.|+++.|++.+|.|...+.+....|+...+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3588899987431 15678888999999999999999999887765322
Q ss_pred ---CCCC---CCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHH
Q 010888 403 ---TGEE---SLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 403 ---~~~~---~~~l~~La~~t~--g~s~~dL~~L~~~A~~~a~rr 439 (498)
.... +...+.++.+.. .|-.+-|+.+++.-....+.+
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 2211 112334554432 355566666666555544443
No 161
>PHA02244 ATPase-like protein
Probab=99.32 E-value=9.5e-12 Score=127.23 Aligned_cols=130 Identities=23% Similarity=0.252 Sum_probs=83.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhccc---CcHHHHHHHHHHHHhcCCeEEEEcCccchhhhc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG---DSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G---~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r 326 (498)
...+|||+||||||||++|+++|..++.+++.++...-.....| ........-+-.+. ..+++|+|||++.+.+..
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA 196 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence 34689999999999999999999999999999985210111111 11111111122222 245899999999886542
Q ss_pred cccchhhHHHHHHHHHHHHHh--------hCCccCCCcEEEEEEeCCC-----------CCCCHHHHhcccceeEecCCC
Q 010888 327 GEARSEHEASRRLKTELLIQM--------DGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRILVPLPD 387 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~l--------d~~~~~~~~viVIaaTn~p-----------~~Ld~al~~Rf~~~i~~~~Pd 387 (498)
+..|...+ ++......++.+|+|+|.+ ..|++++++|| ..+++..|+
T Consensus 197 -------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~ 262 (383)
T PHA02244 197 -------------LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDE 262 (383)
T ss_pred -------------HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCc
Confidence 22222222 2222233568899999974 45899999999 569999998
Q ss_pred HHHHHHHH
Q 010888 388 TEARRAMF 395 (498)
Q Consensus 388 ~~eR~~IL 395 (498)
.. ...|.
T Consensus 263 ~~-E~~i~ 269 (383)
T PHA02244 263 KI-EHLIS 269 (383)
T ss_pred HH-HHHHh
Confidence 43 33443
No 162
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.32 E-value=1.2e-11 Score=132.72 Aligned_cols=216 Identities=21% Similarity=0.216 Sum_probs=142.0
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 291 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~- 291 (498)
.+.+++|.+...+.+.+.+.. ......+++|.|++|||||++|++++..+ +.||+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467899998888888776643 23445689999999999999999999987 5799999998773221
Q ss_pred ----ccCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------c
Q 010888 292 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 352 (498)
Q Consensus 292 ----~G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 352 (498)
.|.... .....+. ...++.|||||+|.|... .+..|+..++.-. .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCCCe
Confidence 111000 0001122 223478999999998654 4445666654321 1
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCc
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 421 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s 421 (498)
...++.+|+||+.. ..+.+.+..|+. .+.+.+|...+|.+-+..++.. -+..++.. ..+++
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~-------~l~~~~~~~~~~~~~~~ 341 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARH-------FLQVAARELGVEAKLLH 341 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHH-------HHHHHHHHcCCCCCCcC
Confidence 12346888888764 235567777773 3677778777776533333211 11222222 24689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
+..+..|.++.|++++|++.+.++......++.. |+.+|+...+
T Consensus 342 ~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~~~------i~~~~l~~~~ 385 (469)
T PRK10923 342 PETEAALTRLAWPGNVRQLENTCRWLTVMAAGQE------VLIQDLPGEL 385 (469)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc------ccHHHCcHhh
Confidence 9999999999999999999999998776554433 7777775444
No 163
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=4.2e-11 Score=136.55 Aligned_cols=203 Identities=22% Similarity=0.223 Sum_probs=132.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~---- 290 (498)
..++|++.+++.+.+.+....... .....|...+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGL---EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 468999999999999886532110 1112333458999999999999999999998 457899998876422
Q ss_pred --------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--c------CC
Q 010888 291 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 354 (498)
Q Consensus 291 --------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------~~ 354 (498)
|+|..+. ..+.+..+..+++||+|||+|.+.+ .+.+.|++.++.-. . .-
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence 3332221 1233455667789999999987643 35666777776321 1 11
Q ss_pred CcEEEEEEeCCCC-----------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC---
Q 010888 355 ELVFVLAATNLPW-----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ--- 402 (498)
Q Consensus 355 ~~viVIaaTn~p~-----------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~--- 402 (498)
.+.++|.|||... .+.|++++|++ .+.|.+.+.++...|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 4577888988521 15678888996 78999999999999998766432
Q ss_pred -----CCCC---CCCHHHHHHHhcC--CcHHHHHHHHHHHHhHHHHH
Q 010888 403 -----TGEE---SLPYDLLVERTEG--YSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 403 -----~~~~---~~~l~~La~~t~g--~s~~dL~~L~~~A~~~a~rr 439 (498)
.... +..++.|++...+ +-.+.++.+++.-...++.+
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 2111 1123445555432 45677777777666555554
No 164
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.31 E-value=2.9e-12 Score=136.65 Aligned_cols=204 Identities=20% Similarity=0.232 Sum_probs=134.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 292 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~ 292 (498)
.+.+++|.+...+.+.+.+.. ......+++|+|++||||+++|++++... +.+|+.++|+.+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK----------IAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 456789988888887776633 22344689999999999999999999877 46899999987642211
Q ss_pred -----cCc----H---HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------cc
Q 010888 293 -----GDS----E---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ 352 (498)
Q Consensus 293 -----G~~----~---~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~ 352 (498)
|.. . ....+.+. ....++|||||++.|.+. .+..|+..++.- ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCCce
Confidence 100 0 00011122 223578999999998644 445555555421 11
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCc
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 421 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s 421 (498)
...++.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+-+..++.. -+..++.. ..+++
T Consensus 271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~-------~l~~~~~~~~~~~~~~~ 342 (445)
T TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANA-------FLERFARELKRKTKGFT 342 (445)
T ss_pred eeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHH-------HHHHHHHHhCCCCCCCC
Confidence 12357888888774 23556666677 34778888888887643333211 12223322 24689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCC
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 453 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~ 453 (498)
+..+..|.++.|++++|++.+.++.+...+.+
T Consensus 343 ~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 343 DDALRALEAHAWPGNVRELENKVKRAVIMAEG 374 (445)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999887654443
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.31 E-value=2.7e-11 Score=114.94 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=101.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-C----CeEEEE
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNI 282 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~----~~~i~v 282 (498)
+....++..+.||+|.++..+.|.-+... ....+++|.|||||||||-+.++|+++ | --+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 34456778899999999999999976533 223589999999999999999999998 3 346788
Q ss_pred eccccchhcccCcHHHHHHHHHHHH-hcC---CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELAR-HHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~-~~~---p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
|+++-.+-.+ ....++ .|..-+ ... ..|+++||+|++... .+..+-..|+-++.. ..
T Consensus 85 NASdeRGIDv--VRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT~g-------------AQQAlRRtMEiyS~t---tR 145 (333)
T KOG0991|consen 85 NASDERGIDV--VRNKIK-MFAQKKVTLPPGRHKIIILDEADSMTAG-------------AQQALRRTMEIYSNT---TR 145 (333)
T ss_pred cCccccccHH--HHHHHH-HHHHhhccCCCCceeEEEeeccchhhhH-------------HHHHHHHHHHHHccc---ch
Confidence 8876543211 222222 232222 122 259999999999543 222333344433322 34
Q ss_pred EEEEeCCCCCCCHHHHhcccceeEecCCCHHH-HHHHHH
Q 010888 359 VLAATNLPWELDAAMLRRLEKRILVPLPDTEA-RRAMFE 396 (498)
Q Consensus 359 VIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~e-R~~IL~ 396 (498)
+..++|....+-+.+.+||.. +.|.-.+..+ ...+++
T Consensus 146 FalaCN~s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRCAI-LRYSKLSDQQILKRLLE 183 (333)
T ss_pred hhhhhcchhhhhhhHHhhhHh-hhhcccCHHHHHHHHHH
Confidence 677899988999999999954 5554444443 334333
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30 E-value=6.7e-11 Score=135.53 Aligned_cols=205 Identities=22% Similarity=0.274 Sum_probs=134.3
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc--
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-- 291 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~-- 291 (498)
...|+|++.+++.+.+.+...... ......|...+||+||||||||++|+++|..+ +.+++.++++++....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 356999999999999987642110 00112345679999999999999999999987 5789999998764321
Q ss_pred ----------ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--cc------C
Q 010888 292 ----------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------S 353 (498)
Q Consensus 292 ----------~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~------~ 353 (498)
+|..+ -..+....+....+||+|||++.+.+ .+.+.|++.++.- .. .
T Consensus 641 ~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 641 ARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred HHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCceecCCCeEEe
Confidence 12111 12233444556668999999998753 3667777777532 11 1
Q ss_pred CCcEEEEEEeCCCCC-------------------------CCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC------
Q 010888 354 DELVFVLAATNLPWE-------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ------ 402 (498)
Q Consensus 354 ~~~viVIaaTn~p~~-------------------------Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~------ 402 (498)
-.+.+||+|||.... +.|.+..|++..+.|.+++.++...|+...+...
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~ 785 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE 785 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 245778899987311 4467888999999999999999999988765321
Q ss_pred -CCCCCC---CHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 010888 403 -TGEESL---PYDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 403 -~~~~~~---~l~~La~~t--~g~s~~dL~~L~~~A~~~a~rr 439 (498)
...... .++.|++.. ..+..+.|+.+++......+.+
T Consensus 786 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 786 RKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred CCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 111111 233455442 2456677777777666665554
No 167
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.30 E-value=2.1e-10 Score=121.34 Aligned_cols=153 Identities=20% Similarity=0.232 Sum_probs=95.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEecc-ccchhcccCc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS-SVVSKWRGDS 295 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~~s-~l~~~~~G~~ 295 (498)
.|+|.+++++.+...+. ...+|||.||||||||++|++++..++. +|..+.+. .......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 58899998888886652 3468999999999999999999998743 45544433 1222333321
Q ss_pred -HHHH--HHHHHHHHhc---CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc-------cCCCcEEEEEE
Q 010888 296 -EKLI--KVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLAA 362 (498)
Q Consensus 296 -~~~l--~~~f~~a~~~---~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~~~~~viVIaa 362 (498)
-... ...|...... ...+||+|||..+. ..+++.|+..|+.-. .+-...++++|
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 0000 1122211111 23489999998664 446777888884321 11122345556
Q ss_pred eCCCCC---CCHHHHhcccceeEecCCC-HHHHHHHHHHh
Q 010888 363 TNLPWE---LDAAMLRRLEKRILVPLPD-TEARRAMFESL 398 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~~~i~~~~Pd-~~eR~~IL~~~ 398 (498)
||.... ..+++..||...+.+++|+ .++..+++...
T Consensus 154 TN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 154 SNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 674321 3358999998888999996 46667888764
No 168
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.30 E-value=8.1e-11 Score=120.62 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=101.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEE--------
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFF-------- 280 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i-------- 280 (498)
.|..|+|++++|+.|.-.+..| ...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 5889999999999987655332 23689999999999999999999877 22221
Q ss_pred -EEecc-------------------ccch-----hcccCcH--HHH--------HHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 281 -NISAS-------------------SVVS-----KWRGDSE--KLI--------KVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 281 -~v~~s-------------------~l~~-----~~~G~~~--~~l--------~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
..+|. ++.. ...|... +.+ .+++. ....++|||||++.+.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLLED- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhCCH-
Confidence 00000 1111 1222110 000 01111 12247999999998853
Q ss_pred ccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCCC-CCCHHHHhcccceeEecCCCH-HHHHH
Q 010888 326 RGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRA 393 (498)
Q Consensus 326 r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p~-~Ld~al~~Rf~~~i~~~~Pd~-~eR~~ 393 (498)
.+++.|+..|+.-. ....++++|+++|..+ .+.+++++||...+.++.|+. ++|.+
T Consensus 146 ------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 146 ------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred ------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 35566666664211 1234577888877654 599999999999999998865 88999
Q ss_pred HHHHhc
Q 010888 394 MFESLL 399 (498)
Q Consensus 394 IL~~~l 399 (498)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998854
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=1.6e-10 Score=132.04 Aligned_cols=207 Identities=21% Similarity=0.239 Sum_probs=129.9
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh---
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~--- 290 (498)
.+.++|++.+++.+...+....... .....|...+||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 4578999999999999885431100 0011233478999999999999999999987 567999999876432
Q ss_pred --cccCcHH-----HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--c------cCCC
Q 010888 291 --WRGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSDE 355 (498)
Q Consensus 291 --~~G~~~~-----~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~------~~~~ 355 (498)
..|.... .-..+....+....+||+|||++.+.+ .+.+.|+..++.- . ..-.
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-------------~v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-------------DVFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-------------HHHHHHHHHHhhCceecCCceEEeec
Confidence 1111100 011122333444558999999987743 3566677777531 1 1123
Q ss_pred cEEEEEEeCCC-------------------------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-------C
Q 010888 356 LVFVLAATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------T 403 (498)
Q Consensus 356 ~viVIaaTn~p-------------------------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~ 403 (498)
+.++|+|||.. ..+.|++++|++..+.|.+++.++...|++..+... .
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~g 790 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERG 790 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45688899863 125578999999999999999999888888776442 1
Q ss_pred CCCCCC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 010888 404 GEESLP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 404 ~~~~~~---l~~La~~t--~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.....+ ++.|+... ..|-.+.|+.+++.-....+.+
T Consensus 791 i~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 791 YEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred CcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 111122 23344321 1233567777776666555544
No 170
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.29 E-value=2.3e-11 Score=123.07 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=95.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh--cccCcH----------HHHHHHHHHHHhcCCeEEEEcC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSE----------KLIKVLFELARHHAPSTIFLDE 318 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~--~~G~~~----------~~l~~~f~~a~~~~p~VL~IDE 318 (498)
.+++||.||||||||++++.+|++++.+++.+++...... ..|... ......+..|.. .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4689999999999999999999999999999988654433 333211 111223333433 458899999
Q ss_pred ccchhhhccccchhhHHHHHHHHHHHHHhhC-----------CccCCCcEEEEEEeCCCC------------CCCHHHHh
Q 010888 319 IDAIISQRGEARSEHEASRRLKTELLIQMDG-----------LTQSDELVFVLAATNLPW------------ELDAAMLR 375 (498)
Q Consensus 319 iD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-----------~~~~~~~viVIaaTn~p~------------~Ld~al~~ 375 (498)
+|...++ +++.|...++. .-.......||+|.|... .+++++++
T Consensus 143 in~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 143 YDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred hhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 9988544 22333333321 011233588999999853 37899999
Q ss_pred cccceeEecCCCHHHHHHHHHHhcC
Q 010888 376 RLEKRILVPLPDTEARRAMFESLLP 400 (498)
Q Consensus 376 Rf~~~i~~~~Pd~~eR~~IL~~~l~ 400 (498)
||...+.+..|+.++..+|+.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9977788999999999999987654
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.2e-11 Score=132.31 Aligned_cols=183 Identities=25% Similarity=0.391 Sum_probs=137.4
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 275 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------- 275 (498)
....++......-.++.++|.++.++++.+.+... ..++-+|.|+||+|||.++..+|.+.
T Consensus 155 ~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~ 222 (786)
T COG0542 155 KYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPE 222 (786)
T ss_pred HHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCH
Confidence 34455555566788999999999999999887542 23678899999999999999999987
Q ss_pred ---CCeEEEEeccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC
Q 010888 276 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 276 ---~~~~i~v~~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 350 (498)
+..++.++.+.+. .+|.|+.+..++.+.+......+.||||||++.+.+.-...+...++.+-+.-.|
T Consensus 223 ~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL------- 295 (786)
T COG0542 223 SLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL------- 295 (786)
T ss_pred HHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-------
Confidence 5678888888876 4799999999999999999888999999999999876433211122333222222
Q ss_pred ccCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC
Q 010888 351 TQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES 407 (498)
Q Consensus 351 ~~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~ 407 (498)
.++. +-+|++|... -.-|+|+-||| ..+.+..|+.++-..||+.+-......+.
T Consensus 296 -ARGe-L~~IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~ 354 (786)
T COG0542 296 -ARGE-LRCIGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHG 354 (786)
T ss_pred -hcCC-eEEEEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccC
Confidence 1333 4566666432 23689999999 55999999999999999988765554444
No 172
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.28 E-value=7.2e-11 Score=131.05 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=107.1
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh--------------------
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------------- 275 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------------------- 275 (498)
.|.+|+|++.++..+.-.+..+ ...+|||.|+||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5889999999998887655332 12579999999999999999999987
Q ss_pred ---------------CCeEEEEeccccchhcccCc--HHHH--------HHHHHHHHhcCCeEEEEcCccchhhhccccc
Q 010888 276 ---------------KTTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEIDAIISQRGEAR 330 (498)
Q Consensus 276 ---------------~~~~i~v~~s~l~~~~~G~~--~~~l--------~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~ 330 (498)
..||+.++++.......|.. +..+ ...+.. ...+||||||++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLDD------ 140 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCCH------
Confidence 35677766654433333321 1111 111111 1236999999998853
Q ss_pred hhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCC-CCCCHHHHhcccceeEecCC-CHHHHHHHHHHh
Q 010888 331 SEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFESL 398 (498)
Q Consensus 331 ~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p-~~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~~~ 398 (498)
.+++.|+..|+.-. ....++++|+|+|.. ..+.+++++||...+.++.| +.+++.++++..
T Consensus 141 -------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 141 -------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred -------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 35667777775211 112357888888854 35889999999988888776 467788888765
Q ss_pred c
Q 010888 399 L 399 (498)
Q Consensus 399 l 399 (498)
.
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.28 E-value=6e-11 Score=135.50 Aligned_cols=204 Identities=22% Similarity=0.255 Sum_probs=134.1
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 290 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~---- 290 (498)
+.|+|++.+++.+...+...... ......|...+||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 46899999999999887542110 01112344568999999999999999999988 468899998776421
Q ss_pred --------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--c------cCC
Q 010888 291 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSD 354 (498)
Q Consensus 291 --------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~------~~~ 354 (498)
|+|..+ ...+.+..+..+.+||+|||+|.+.+ .+.+.|++.++.- . ..-
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCcEEec
Confidence 222211 12344555666669999999998753 3667778877742 1 112
Q ss_pred CcEEEEEEeCCCCC-------------------------------------CCHHHHhcccceeEecCCCHHHHHHHHHH
Q 010888 355 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 355 ~~viVIaaTn~p~~-------------------------------------Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
.+.++|+|||.... +.|++++|++..+.|.+.+.++...|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 45788889875310 34678889999999999999999999887
Q ss_pred hcCCC-------CCCC--C-CCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 010888 398 LLPSQ-------TGEE--S-LPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 398 ~l~~~-------~~~~--~-~~l~~La~~--t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
.+.+. .... + ...+.|++. ...+-.+.|+.+++.-...++.+
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 76432 1111 1 113345554 22345667777766666555544
No 174
>PRK15115 response regulator GlrR; Provisional
Probab=99.28 E-value=1e-11 Score=132.33 Aligned_cols=213 Identities=23% Similarity=0.262 Sum_probs=132.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc---
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR--- 292 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~--- 292 (498)
.++|.+...+.+.+.+... ......++|+|++|||||++|+++++.. +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhh----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 5777776666655544331 2334679999999999999999999986 57999999987643211
Q ss_pred --cCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCC
Q 010888 293 --GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDE 355 (498)
Q Consensus 293 --G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~ 355 (498)
|.... .....+. ....++|||||+|.|.+. .+..|+..++.-. ....
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~~~~ 268 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQ---AAEGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRDIDI 268 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEE---ECCCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCceeee
Confidence 10000 0001121 223478999999999654 4445555554221 1122
Q ss_pred cEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHH
Q 010888 356 LVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSD 424 (498)
Q Consensus 356 ~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~d 424 (498)
++.+|++|+.+ ..+.+.+..|+ ..+.+.+|...+|.+-+..++.. -+..++.. ..++++..
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~-------~l~~~~~~~~~~~~~~~~~a 340 (444)
T PRK15115 269 DVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALAERTEDIPLLANH-------LLRQAAERHKPFVRAFSTDA 340 (444)
T ss_pred eEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChHhccccHHHHHHH-------HHHHHHHHhCCCCCCcCHHH
Confidence 57888888863 12333444444 33677788888887433222111 12222222 23689999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 425 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 425 L~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
+..|.++.|++++|++.+.++......++. .|+.+|+...+
T Consensus 341 ~~~L~~~~WpgNvreL~~~i~~~~~~~~~~------~i~~~~l~~~~ 381 (444)
T PRK15115 341 MKRLMTASWPGNVRQLVNVIEQCVALTSSP------VISDALVEQAL 381 (444)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCCCC------ccChhhhhhhh
Confidence 999999999999999999999876544333 27777776555
No 175
>PRK09087 hypothetical protein; Validated
Probab=99.27 E-value=6.9e-11 Score=114.95 Aligned_cols=136 Identities=21% Similarity=0.230 Sum_probs=87.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
..++|+||+|+|||||++++++..+.. +++..++... .+..... .+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC------
Confidence 459999999999999999999887655 3333322211 1111111 47999999976311
Q ss_pred hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCC
Q 010888 332 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE 406 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~ 406 (498)
...++..++.....+ ..+|++++..|.. ..+.+++|+. ..+.+..|+.++|..+++..+.......
T Consensus 103 --------~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 --------ETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred --------HHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 122444444333333 3456666555532 3678999985 6788899999999999999987765443
Q ss_pred C-CCHHHHHHHhc
Q 010888 407 S-LPYDLLVERTE 418 (498)
Q Consensus 407 ~-~~l~~La~~t~ 418 (498)
+ ..++.|+++..
T Consensus 174 ~~ev~~~La~~~~ 186 (226)
T PRK09087 174 DPHVVYYLVSRME 186 (226)
T ss_pred CHHHHHHHHHHhh
Confidence 3 23455666555
No 176
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.4e-10 Score=117.92 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=105.7
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--------------------- 276 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~--------------------- 276 (498)
++++|.+.+...+..+.... ...++.+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 36778888888888776431 12234699999999999999999999986
Q ss_pred ---CeEEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC
Q 010888 277 ---TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 349 (498)
Q Consensus 277 ---~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 349 (498)
-.++.+++++..... .....++.+.+.... ...-|++|||+|.|.. ...+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-------------~A~nallk~lE- 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-------------DAANALLKTLE- 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhc-
Confidence 467788877654321 123445554444333 2357999999999964 35566777776
Q ss_pred CccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 350 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 350 ~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
....+..+|.+||.++.+-+.+++|+ ..+.|++|+........+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 33445778889999999999999999 558887766555554444
No 177
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.24 E-value=7.7e-11 Score=126.01 Aligned_cols=216 Identities=21% Similarity=0.243 Sum_probs=140.0
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 291 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~- 291 (498)
.+..++|.+...+.+.+.+.. ......+++++|++||||+++|++++..+ +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK----------IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHH----------HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 456788888777777666533 23344689999999999999999999876 5799999998774321
Q ss_pred ----ccCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------c
Q 010888 292 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 352 (498)
Q Consensus 292 ----~G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 352 (498)
.|.... .....+.. ...++|||||+|.+.+. .+..|+..++.-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~ 274 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQT 274 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 110000 00111222 23478999999999654 4455666554321 1
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCc
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 421 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s 421 (498)
...++.+|++|+.+ ..+.+.+..|+. .+.+..|+..+|.+-+..++.. -+..++.. ..+++
T Consensus 275 ~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~l~~~-------~l~~~~~~~~~~~~~~~ 346 (457)
T PRK11361 275 IKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISLLANH-------FLQKFSSENQRDIIDID 346 (457)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHHHHHH-------HHHHHHHHcCCCCCCcC
Confidence 12347889999864 135555666663 3778888888886543333211 12233332 24689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 422 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 422 ~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
+..+..|..+.|+++++++.+.++.......+. .|+.+|+...+
T Consensus 347 ~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~~------~i~~~~l~~~~ 390 (457)
T PRK11361 347 PMAMSLLTAWSWPGNIRELSNVIERAVVMNSGP------IIFSEDLPPQI 390 (457)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCC------cccHHHChHhh
Confidence 999999999999999999999998876544332 27777776544
No 178
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.23 E-value=3e-11 Score=129.44 Aligned_cols=218 Identities=20% Similarity=0.179 Sum_probs=139.1
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc-
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR- 292 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~- 292 (498)
...++|.+...+++.+.+... ......+++.|++||||+++|++++... +.+|+.++|..+.....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 456889888888877766431 2334679999999999999999999876 57999999987643211
Q ss_pred ----cCc----HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCc
Q 010888 293 ----GDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 356 (498)
Q Consensus 293 ----G~~----~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~ 356 (498)
|.. ...............+++|||||++.+... .+..|+..++.-. ....+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeee
Confidence 100 000000000111223578999999998654 3445555554211 11225
Q ss_pred EEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHHH
Q 010888 357 VFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSDI 425 (498)
Q Consensus 357 viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~dL 425 (498)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|.+-+..++.. -+..++.. ..++++..+
T Consensus 270 ~rii~~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~-------~l~~~~~~~~~~~~~~~~~a~ 341 (463)
T TIGR01818 270 VRIVAATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARH-------FLALAARELDVEPKLLDPEAL 341 (463)
T ss_pred eEEEEeCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHH-------HHHHHHHHhCCCCCCcCHHHH
Confidence 6788888764 234556666773 3567777766665433333211 11222322 246899999
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 426 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 426 ~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
..|..+-|++++|++.+.++.....+.+.. |+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~~~~~------i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMASGDE------VLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCCCc------ccHHhchHHH
Confidence 999999999999999999998776554433 7778876555
No 179
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=119.76 Aligned_cols=154 Identities=27% Similarity=0.340 Sum_probs=102.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch--hcccCcH
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGDSE 296 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~--~~~G~~~ 296 (498)
.++|.++++..+...+. ...++||.||||||||++|+++|..++.+|+.+.|..... ...|...
T Consensus 25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 37787777777665542 2368999999999999999999999999999999964432 2222211
Q ss_pred HHHH----HHHHHHHh--cCC--eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC----cc-----CCCcEEE
Q 010888 297 KLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQ-----SDELVFV 359 (498)
Q Consensus 297 ~~l~----~~f~~a~~--~~p--~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----~~-----~~~~viV 359 (498)
-... ..+....+ ... +++++|||+...+ .+++.|+..|+.. .. -..+.+|
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p-------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~v 157 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP-------------EVQNALLEALEERQVTVPGLTTIRLPPPFIV 157 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCH-------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEE
Confidence 1111 00100000 001 4999999988754 3667777777641 11 1245778
Q ss_pred EEEeC-----CCCCCCHHHHhcccceeEecCC-CHHHHHHHHHHhc
Q 010888 360 LAATN-----LPWELDAAMLRRLEKRILVPLP-DTEARRAMFESLL 399 (498)
Q Consensus 360 IaaTn-----~p~~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~~~l 399 (498)
|+|+| ....|++++++||...++++.| +..+...++....
T Consensus 158 iaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 158 IATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 88888 3356899999999888999999 5555555555544
No 180
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.20 E-value=1.3e-11 Score=116.95 Aligned_cols=45 Identities=47% Similarity=0.660 Sum_probs=37.1
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
|++|+|++.+|+.|.-.... .+++||+||||||||++|+.+...+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999976532 3799999999999999999999866
No 181
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=4.1e-10 Score=114.71 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=119.5
Q ss_pred CCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-----------------
Q 010888 216 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 278 (498)
Q Consensus 216 ~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~----------------- 278 (498)
.|++|+|++.+++.+.+.+.. ..-++.+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 588999999999999998754 2334689999999999999999999987321
Q ss_pred -EEEEecccc-chh--------ccc--------CcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHH
Q 010888 279 -FFNISASSV-VSK--------WRG--------DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEAS 336 (498)
Q Consensus 279 -~i~v~~s~l-~~~--------~~G--------~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 336 (498)
++.+.+... .++ ..| -.-..++.+.+.+.. ....|++||++|.|.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 122221100 000 000 011234455444432 345799999999884
Q ss_pred HHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 010888 337 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER 416 (498)
Q Consensus 337 ~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~ 416 (498)
....+.|++.++... . .++|..|+.++.|-+.++||+ ..+.|+.|+.++-..+|+....... .+.+...++..
T Consensus 138 ~~aaNaLLK~LEEPp---~-~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 138 EAAANALLKTLEEPG---N-GTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHHhCCC---C-CeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 335678889888542 2 346667788899999999999 6699999999999999987643211 11124566766
Q ss_pred hcCCcHHHHH
Q 010888 417 TEGYSGSDIR 426 (498)
Q Consensus 417 t~g~s~~dL~ 426 (498)
..|-.+..+.
T Consensus 211 a~Gs~~~al~ 220 (314)
T PRK07399 211 AQGSPGAAIA 220 (314)
T ss_pred cCCCHHHHHH
Confidence 6664444433
No 182
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.18 E-value=6.3e-11 Score=105.95 Aligned_cols=110 Identities=29% Similarity=0.337 Sum_probs=70.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc------hhcccC---cHHHHHHHHHHHHhcCCeEEEEcCccchh
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------SKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~------~~~~G~---~~~~l~~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
+|+|+||||||||++|+.+|+.++.+++.++++... +.+.-. ....-..+...++ .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 589999999999999999999999999999886532 111100 0000000000111 46899999998764
Q ss_pred hhccccchhhHHHHHHHHHHHHHhhCCcc----------CCC------cEEEEEEeCCCC----CCCHHHHhcc
Q 010888 324 SQRGEARSEHEASRRLKTELLIQMDGLTQ----------SDE------LVFVLAATNLPW----ELDAAMLRRL 377 (498)
Q Consensus 324 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~----------~~~------~viVIaaTn~p~----~Ld~al~~Rf 377 (498)
+ .++..|+..++.-.. ... .+.+|+|+|... .+++++++||
T Consensus 79 ~-------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 P-------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp H-------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred H-------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2 355556666653210 111 388999999988 7999999998
No 183
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=7.5e-10 Score=113.68 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=105.6
Q ss_pred CCccccC-cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe----------------
Q 010888 216 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------- 278 (498)
Q Consensus 216 ~~~~IvG-~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---------------- 278 (498)
.|++|+| ++.+++.++..+.. ...++.+||+||+|+||+++|+++++.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788999 88899999988743 2345678999999999999999999987321
Q ss_pred --------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHH
Q 010888 279 --------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346 (498)
Q Consensus 279 --------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ 346 (498)
+..+... +. ...-..++.+.+.+. .....|++|||+|.+. ....+.|++.
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-------------~~a~NaLLK~ 133 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-------------ASAANSLLKF 133 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-------------HHHHHHHHHH
Confidence 2222111 01 012234455444433 2234699999998884 3356788888
Q ss_pred hhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHH
Q 010888 347 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 347 ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
++. ++..+++|.+|+.+..+.+.+++|+ ..++++.|+.++-..+|+.
T Consensus 134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEE---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcC---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 874 3344667778888889999999999 6699999999888777764
No 184
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.18 E-value=5.8e-10 Score=105.16 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=89.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------EEEEeccccchhcccCcHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 305 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------~i~v~~s~l~~~~~G~~~~~l~~~f~~ 305 (498)
.++.+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 44679999999999999999999987432 22221110 0 0122445555555
Q ss_pred HHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhccccee
Q 010888 306 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 381 (498)
Q Consensus 306 a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i 381 (498)
+.. ..+.|++|||+|.+.. ...+.|+..++.. .....+|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-------------~~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-------------AAANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-------------HHHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 543 3456999999998843 2355678888742 234556667777788999999999 579
Q ss_pred EecCCCHHHHHHHHHHh
Q 010888 382 LVPLPDTEARRAMFESL 398 (498)
Q Consensus 382 ~~~~Pd~~eR~~IL~~~ 398 (498)
.+++|+.++...+++..
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999888876
No 185
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.17 E-value=1.2e-09 Score=109.66 Aligned_cols=131 Identities=22% Similarity=0.175 Sum_probs=80.3
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC------------CCCCCHHHHhccc
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 378 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~------------p~~Ld~al~~Rf~ 378 (498)
|+||||||++.|-- ...+-|...|+ ..-.++ ||.+||+ |..++..+++|.
T Consensus 292 pGVLFIDEvHmLDI-------------E~FsFlnrAlE---se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHMLDI-------------ECFSFLNRALE---SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhhhH-------------HHHHHHHHHhh---cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 78999999987721 23333444444 222334 5556664 456889999999
Q ss_pred ceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCC
Q 010888 379 KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 457 (498)
Q Consensus 379 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~ 457 (498)
.++...+++.++-++|++.++.......+. .++.|++....-|-+.--+|+.-|...|.+| +.
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------g~---------- 417 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------GS---------- 417 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------CC----------
Confidence 678888899999999999998777665433 3555555433333333333333333333222 11
Q ss_pred CCCCCCHHHHHHHHhccCCC
Q 010888 458 QIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 458 ~~~~It~eD~~~AL~~~~ps 477 (498)
..+..+|++.|-.-+-.+
T Consensus 418 --~~V~~~dVe~a~~lF~D~ 435 (450)
T COG1224 418 --KRVEVEDVERAKELFLDV 435 (450)
T ss_pred --CeeehhHHHHHHHHHhhH
Confidence 128899999988766443
No 186
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=9.6e-10 Score=112.61 Aligned_cols=131 Identities=19% Similarity=0.291 Sum_probs=93.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------EEEEeccccchhcccCcHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFE 304 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------~i~v~~s~l~~~~~G~~~~~l~~~f~ 304 (498)
+.++.+||+||+|+|||++|+++|+.+.+. ++.+....- + ..-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 445789999999999999999999988431 222222100 0 0112344555555
Q ss_pred HHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccce
Q 010888 305 LARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 380 (498)
Q Consensus 305 ~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~ 380 (498)
.+.. ....|++||++|.|. ....+.|++.++. +...+++|.+|+.++.+.+.++||+. .
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~-------------~~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~-~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN-------------RNAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQ-Q 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC-------------HHHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhce-e
Confidence 4432 345699999999984 3467788888874 33457788899999999999999994 4
Q ss_pred eEecCCCHHHHHHHHHHhc
Q 010888 381 ILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~l 399 (498)
+.|++|+.++-...|....
T Consensus 160 ~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 160 QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeCCCcCHHHHHHHHHHhc
Confidence 9999999999888887654
No 187
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.16 E-value=8.2e-10 Score=118.81 Aligned_cols=145 Identities=29% Similarity=0.366 Sum_probs=93.4
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------------------
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------------------- 275 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------------------- 275 (498)
..|+++.|++.+++.+.-.+ ....+++|.||||||||++++.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 47999999999988776543 334789999999999999999998743
Q ss_pred ---------CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHH
Q 010888 276 ---------KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346 (498)
Q Consensus 276 ---------~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ 346 (498)
..||..++++.......|.........+..|. .++|||||++.+. ..+++.|+..
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~-------------~~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK-------------RSVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC-------------HHHHHHHHHH
Confidence 12333333322222222221111222333333 3799999998874 3455666666
Q ss_pred hhCCc----------cCCCcEEEEEEeCCC-----C------------------CCCHHHHhcccceeEecCCCHH
Q 010888 347 MDGLT----------QSDELVFVLAATNLP-----W------------------ELDAAMLRRLEKRILVPLPDTE 389 (498)
Q Consensus 347 ld~~~----------~~~~~viVIaaTn~p-----~------------------~Ld~al~~Rf~~~i~~~~Pd~~ 389 (498)
|+.-. ....++.+|+++|.- . .++..+++||+..+.++.++.+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 64321 112357889999852 1 3888999999999998876544
No 188
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.14 E-value=1.5e-09 Score=117.29 Aligned_cols=202 Identities=20% Similarity=0.194 Sum_probs=129.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhcccc---C---c-----------hhhc---cC-C-CCCceEEEEcCCCCcHHHHH
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIK---Y---P-----------KYFT---GL-L-SPWKGILLFGPPGTGKTMLA 268 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~---~---~-----------~~~~---~~-~-~~~~~vLL~GppGtGKT~lA 268 (498)
...+..|.|+.|.+.+-+.+..++..+-. . . +.+. .. . ++.+-+||+||||-||||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 34567799999999988888877754210 0 0 0000 01 1 22345789999999999999
Q ss_pred HHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHH--------hcCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 269 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR--------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 269 raia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~--------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
+.||++.|..+++||+++-.+. ..++..+..|- ...|..|+|||||--. +..+
T Consensus 344 HViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------------~~~V 404 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------------RAAV 404 (877)
T ss_pred HHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------HHHH
Confidence 9999999999999999876432 22333222221 2568899999998643 2234
Q ss_pred HHHHHHhh-------CCccC-----------CCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcC
Q 010888 341 TELLIQMD-------GLTQS-----------DELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP 400 (498)
Q Consensus 341 ~~Ll~~ld-------~~~~~-----------~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~ 400 (498)
+.++..+. |-... .-...|||.+|..+ .|+|+. -|...++|+.|......+=|+.++.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 44444443 11000 01245789999844 566655 6788899999988887777777776
Q ss_pred CCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 401 SQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 401 ~~~~~~~~-~l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
......+. .+..|++.+. .||+.-++....-+.
T Consensus 483 rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 483 RENMRADSKALNALCELTQ----NDIRSCINTLQFLAS 516 (877)
T ss_pred hhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHH
Confidence 66655433 3455555544 588876665554443
No 189
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.14 E-value=3e-10 Score=99.11 Aligned_cols=128 Identities=30% Similarity=0.412 Sum_probs=80.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeccccchh--------------cccCcHHHHHHHHHHHHhcCCeE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~---~i~v~~s~l~~~--------------~~G~~~~~l~~~f~~a~~~~p~V 313 (498)
+.+++|+||||||||++++.++..+... ++.+++...... ............+..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3689999999999999999999999764 888887654321 12234455667788888777899
Q ss_pred EEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC-CCCCCHHHHhcccceeEecCC
Q 010888 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 314 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~-p~~Ld~al~~Rf~~~i~~~~P 386 (498)
|+|||++.+............ ........ ........+|+++|. ....+..+..|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLL----EELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhh----hhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999998654221100000 00000011 112233667888885 334455555588777776554
No 190
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.14 E-value=1.3e-09 Score=120.07 Aligned_cols=54 Identities=35% Similarity=0.523 Sum_probs=45.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
..|..-+++++|++++++.++..+.. .++++|+||||||||++++++++.++..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34667799999999999999887642 2489999999999999999999998543
No 191
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.12 E-value=7.6e-11 Score=125.44 Aligned_cols=213 Identities=19% Similarity=0.279 Sum_probs=134.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc---
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR--- 292 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~--- 292 (498)
.++|.+...+.+.+.+.. .......++++|++||||+++|++++... +.||+.++|+.+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~----------~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL----------VAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhh----------ccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 577777777776665532 23445789999999999999999999876 57999999987642211
Q ss_pred --cCcHH-------HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCC
Q 010888 293 --GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDE 355 (498)
Q Consensus 293 --G~~~~-------~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~ 355 (498)
|.... .....+ ....+++|||||++.|.+. .+..|+..++.-. ....
T Consensus 210 lfg~~~~~~~~~~~~~~g~~---~~a~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRF---VEADGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQTISV 273 (441)
T ss_pred hcCCCCCCcCCCCcCCCCce---eECCCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCceeee
Confidence 10000 000111 1223589999999999754 3444555554321 1112
Q ss_pred cEEEEEEeCCCC-------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH----hcCCcHHH
Q 010888 356 LVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYSGSD 424 (498)
Q Consensus 356 ~viVIaaTn~p~-------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~----t~g~s~~d 424 (498)
++.+|++|+.+- .+.+.+..|+ ..+.+.+|+..+|.+-+..++.. -+..++.. ..++++..
T Consensus 274 ~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~Di~~l~~~-------~l~~~~~~~~~~~~~~~~~a 345 (441)
T PRK10365 274 DVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRREDIPLLAGH-------FLQRFAERNRKAVKGFTPQA 345 (441)
T ss_pred ceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhcchhHHHHHHH-------HHHHHHHHhCCCCCCcCHHH
Confidence 466787876641 2444455555 34677888888776543333211 12223332 24589999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 425 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 425 L~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
+..|..+.|++++|++.+.++......+.. .|+.+|+...+
T Consensus 346 ~~~L~~~~wpgN~reL~~~~~~~~~~~~~~------~i~~~~l~~~~ 386 (441)
T PRK10365 346 MDLLIHYDWPGNIRELENAVERAVVLLTGE------YISERELPLAI 386 (441)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCCC------ccchHhCchhh
Confidence 999999999999999999999866544332 27777776554
No 192
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=1.4e-09 Score=114.15 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=87.8
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------EEEEec----c
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FFNISA----S 285 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~-------~i~v~~----s 285 (498)
++++.+.++..+.+...+. ..++++|+||||||||++|+.+|..+... ++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 5677777777777766552 23689999999999999999999988421 223322 1
Q ss_pred ccchhcc----cC--cHHHHHHHHHHHHh--cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC--------
Q 010888 286 SVVSKWR----GD--SEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 349 (498)
Q Consensus 286 ~l~~~~~----G~--~~~~l~~~f~~a~~--~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-------- 349 (498)
++.+.+. |. .......+...|.. ..|.+|+|||++.....+ +...++..++.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccc
Confidence 2222211 10 01122334445543 357999999998764332 22222332221
Q ss_pred -----------CccCCCcEEEEEEeCCCC----CCCHHHHhcccceeEecC
Q 010888 350 -----------LTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 350 -----------~~~~~~~viVIaaTn~p~----~Ld~al~~Rf~~~i~~~~ 385 (498)
.-....++.||+|+|..+ .+|.|++|||. .+++.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 012245699999999987 69999999994 466654
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=99.09 E-value=2.7e-09 Score=120.27 Aligned_cols=148 Identities=19% Similarity=0.148 Sum_probs=108.9
Q ss_pred CCceEEEEc--CCCCcHHHHHHHHHHHh-----CCeEEEEeccccchhcccCcHHHHHHHHHHHHhc------CCeEEEE
Q 010888 250 PWKGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHH------APSTIFL 316 (498)
Q Consensus 250 ~~~~vLL~G--ppGtGKT~lAraia~~l-----~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~------~p~VL~I 316 (498)
|.-+-+..| |++.|||++|+++|+++ +.+++++|+++..+ -..++.+...+... ...|++|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 334456779 99999999999999998 56899999987532 23455555443322 2369999
Q ss_pred cCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 317 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 317 DEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
||+|.|.. ..++.|+..|+.. ...+.+|.+||.+..+.+++++|| ..+.|+.|+.++-...|+
T Consensus 637 DEaD~Lt~-------------~AQnALLk~lEep---~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQ-------------DAQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCH-------------HHHHHHHHHhhCC---CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 99999943 3567788888743 345778889999999999999999 668999999998888888
Q ss_pred HhcCCCCCC-CCCCHHHHHHHhcCC
Q 010888 397 SLLPSQTGE-ESLPYDLLVERTEGY 420 (498)
Q Consensus 397 ~~l~~~~~~-~~~~l~~La~~t~g~ 420 (498)
..+...... .+..+..++..+.|-
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEGD 724 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCC
Confidence 877655443 233466667666653
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.09 E-value=3.4e-10 Score=105.35 Aligned_cols=113 Identities=25% Similarity=0.312 Sum_probs=74.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC----eEEEEeccccchhcccCcHHHHHHHHHH----HHhcCCeEEEEcCccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFEL----ARHHAPSTIFLDEIDA 321 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~----~~i~v~~s~l~~~~~G~~~~~l~~~f~~----a~~~~p~VL~IDEiD~ 321 (498)
|-.++||.||+|||||.+|+++|+.+.. +++.++++++..... ....+...... .......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4468999999999999999999999986 999999998876110 11111111111 1111124999999999
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcEEEEEEeCCC
Q 010888 322 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 366 (498)
Q Consensus 322 l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIaaTn~p 366 (498)
+.+... .........+++.|+..+++-. -.-.++++|+|+|--
T Consensus 80 a~~~~~--~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNS--GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTT--TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccccc--ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 987522 2223333567888999887421 112468899999874
No 195
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.6e-09 Score=106.45 Aligned_cols=156 Identities=27% Similarity=0.352 Sum_probs=98.2
Q ss_pred CeEEEEcCccchhhhccccchhhHHHH-HHHHHHHHHhhCCcc-------CCCcEEEEEEe----CCCCCCCHHHHhccc
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLE 378 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~viVIaaT----n~p~~Ld~al~~Rf~ 378 (498)
.+|+||||||.++...+.+.. +.++ -++-.||-.++|-+. +...+++|++. ..|.+|-|.|.-||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 359999999999987542221 3333 455567777776432 23458888875 678899999999999
Q ss_pred ceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhHH-------HHHHHHHhhch
Q 010888 379 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQP-------LRRLMVLLEGR 447 (498)
Q Consensus 379 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g----~s~~dL~~L~~~A~~~a-------~rrl~~~le~~ 447 (498)
-.+++...+.++...||..--... -..+..|. .|+| |+...|..+..-|+.-+ .||+..+++..
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sL----ikQY~aLl-kTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASL----IKQYKALL-KTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHH----HHHHHHHH-hhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 999999999999888876421000 00011111 1333 77788888888777544 46776666654
Q ss_pred hc----cCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 448 QE----VAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 448 ~~----~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
-+ .+++.. .+...|+.+-+.+.|..+
T Consensus 404 LediSFeA~d~~-g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 404 LEDISFEAPDMS-GQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHHhCccCCcCC-CCeEEEcHHHHHHHHHHH
Confidence 32 222222 223347788777777654
No 196
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.08 E-value=1.3e-09 Score=118.28 Aligned_cols=167 Identities=23% Similarity=0.205 Sum_probs=101.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE----eccccchhccc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWRG 293 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v----~~s~l~~~~~G 293 (498)
.+|.|++.+|..+.-.+.........-........+|||+|+||||||++|+++++.+....+.. ++..+......
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 46899999988887655332110000000123345899999999999999999999875432221 22222111100
Q ss_pred C---cHHHH-HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEE
Q 010888 294 D---SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFV 359 (498)
Q Consensus 294 ~---~~~~l-~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viV 359 (498)
. .+..+ .+.+. ....++++|||+|.+... .+..|+..|+.-. ..+.+..|
T Consensus 283 ~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 283 DPETREFTLEGGALV---LADNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred ccCcceEEecCccEE---ecCCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 0 00000 01111 123479999999998543 4455666664211 11245789
Q ss_pred EEEeCCCC-------------CCCHHHHhcccceeE-ecCCCHHHHHHHHHHhcC
Q 010888 360 LAATNLPW-------------ELDAAMLRRLEKRIL-VPLPDTEARRAMFESLLP 400 (498)
Q Consensus 360 IaaTn~p~-------------~Ld~al~~Rf~~~i~-~~~Pd~~eR~~IL~~~l~ 400 (498)
|||+|+.+ .|++++++||+.... ...|+.+...+|+++.+.
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999752 599999999987554 467899999999988654
No 197
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.1e-10 Score=116.23 Aligned_cols=146 Identities=25% Similarity=0.332 Sum_probs=110.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc-ccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 327 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s-~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~ 327 (498)
.+-.++||+||||+|||.||..+|..++.||+.+-.. ++.+......-..++.+|+.|....-++|++|+++.|..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD--- 612 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD--- 612 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc---
Confidence 4446899999999999999999999999999987543 333322222234578999999999889999999999853
Q ss_pred ccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH-HHHhcccceeEecCCCH-HHHHHHHHH
Q 010888 328 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRILVPLPDT-EARRAMFES 397 (498)
Q Consensus 328 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~-al~~Rf~~~i~~~~Pd~-~eR~~IL~~ 397 (498)
...-....++.++..|+..+......+.+.+|++||.+...|.. .+...|+..+.+|.-+. ++..+++..
T Consensus 613 ~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 613 YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 23344566788888999999887777788989998887654432 56668988888877644 566666654
No 198
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.06 E-value=1e-08 Score=101.74 Aligned_cols=191 Identities=17% Similarity=0.226 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-eEE--E-Eec----ccc----chh----cccCcH-HHHHHH----HHHHHhcC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT-TFF--N-ISA----SSV----VSK----WRGDSE-KLIKVL----FELARHHA 310 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~-~~i--~-v~~----s~l----~~~----~~G~~~-~~l~~~----f~~a~~~~ 310 (498)
..++|+||+|+|||++++.+++++.. .+. . +++ .++ ... ..+... .....+ ........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999998752 222 1 111 111 111 111111 111121 22233556
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC---CC----CHHHHhcccceeEe
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---EL----DAAMLRRLEKRILV 383 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~---~L----d~al~~Rf~~~i~~ 383 (498)
+.+|+|||++.+... ..+.+....+........+.|+.+. .++ .+ ...+.+|+...+.+
T Consensus 124 ~~vliiDe~~~l~~~-------------~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------LLEELRMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHH-------------HHHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeeeC
Confidence 789999999987432 1222221111111122223333333 221 11 23466688788899
Q ss_pred cCCCHHHHHHHHHHhcCCCCCC-----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCC
Q 010888 384 PLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQ 458 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~~~~~~-----~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~ 458 (498)
++.+.++-.+++...+...... .+..++.+.+.+.|.. +.|..++..++..+..+ .
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~------------------~ 250 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE------------------E 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc------------------C
Confidence 9999999999998887543321 2234666788888875 55999999888876653 0
Q ss_pred CCCCCHHHHHHHHhccC
Q 010888 459 IGPIRPEDVEIALKNTR 475 (498)
Q Consensus 459 ~~~It~eD~~~AL~~~~ 475 (498)
...|+.+++..++..++
T Consensus 251 ~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 KREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 12399999999998765
No 199
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.05 E-value=6.4e-09 Score=114.49 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccchhcccCcH--HHHH-H--HHH--HHHhcCCeEEEEcCccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSE--KLIK-V--LFE--LARHHAPSTIFLDEIDA 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~~~~G~~~--~~l~-~--~f~--~a~~~~p~VL~IDEiD~ 321 (498)
-.+|||.|+||||||++|+++++.+. .||+.+..........|... ..+. . .+. .......++|||||++.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 36899999999999999999999885 46888876433333334321 0000 0 000 00012236999999998
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCCC---CCCHHHHhcccceeEecC-CC
Q 010888 322 IISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPL-PD 387 (498)
Q Consensus 322 l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p~---~Ld~al~~Rf~~~i~~~~-Pd 387 (498)
+.+ .+++.|+..|+.-. .....+.||+|+|..+ .|.+++..||...+.+.. |+
T Consensus 96 l~~-------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 96 LDD-------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred CCH-------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 854 35667777775321 1123578888888765 699999999998776654 67
Q ss_pred HHHHHHHHHHhc
Q 010888 388 TEARRAMFESLL 399 (498)
Q Consensus 388 ~~eR~~IL~~~l 399 (498)
.++|.+|++...
T Consensus 163 ~~er~eil~~~~ 174 (589)
T TIGR02031 163 QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHH
Confidence 888999998876
No 200
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.02 E-value=4.9e-11 Score=127.61 Aligned_cols=209 Identities=21% Similarity=0.268 Sum_probs=129.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh--CCeEEEEeccccchhc-------------ccCcHHHHHHHHHHHHhcCCeE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKW-------------RGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l--~~~~i~v~~s~l~~~~-------------~G~~~~~l~~~f~~a~~~~p~V 313 (498)
...-++++.|.|||||..++|++++.+ ..||+.|||..+.... .|...+..+..++.|.. +.
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---Gt 410 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GT 410 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---Cc
Confidence 344679999999999999999999977 5799999997664321 12222333344444444 57
Q ss_pred EEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh-cccceeE-------ecC
Q 010888 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-RLEKRIL-------VPL 385 (498)
Q Consensus 314 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~-Rf~~~i~-------~~~ 385 (498)
||+|||..|+...|. ...+.+.+.-+.-+++.. ...+|.||+||++ +|..-+.. ||.+.+| +.+
T Consensus 411 lFldeIgd~p~~~Qs-----~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~--dl~~lv~~g~fredLyyrL~~~~i~l 482 (606)
T COG3284 411 LFLDEIGDMPLALQS-----RLLRVLQEGVVTPLGGTR-IKVDIRVIAATHR--DLAQLVEQGRFREDLYYRLNAFVITL 482 (606)
T ss_pred cHHHHhhhchHHHHH-----HHHHHHhhCceeccCCcc-eeEEEEEEeccCc--CHHHHHHcCCchHHHHHHhcCeeecc
Confidence 999999998754221 122333333333344444 4557999999998 44443333 6655554 445
Q ss_pred CCHHHHH---HHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCC------
Q 010888 386 PDTEARR---AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL------ 456 (498)
Q Consensus 386 Pd~~eR~---~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~------ 456 (498)
|...+|. ..|.+++..... .. ...++..+..|+...|++++|++.++++....++++...
T Consensus 483 P~lr~R~d~~~~l~~~~~~~~~-~~----------~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp 551 (606)
T COG3284 483 PPLRERSDRIPLLDRILKREND-WR----------LQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLP 551 (606)
T ss_pred CchhcccccHHHHHHHHHHccC-CC----------ccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCC
Confidence 6666554 344444433221 11 125667778899999999999999999887655543321
Q ss_pred C--------CCCCCCHHHHHHHHhccCCChh
Q 010888 457 P--------QIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 457 ~--------~~~~It~eD~~~AL~~~~ps~~ 479 (498)
+ ....+..+.+..|+...+-..+
T Consensus 552 ~~l~~~~~~~~~~~~~~~l~~al~~~~~~is 582 (606)
T COG3284 552 PELLEEQATPREDIEKAALLAALQATNGNIS 582 (606)
T ss_pred HHHHhhhcccccchHHHHHHHHHHHcCCCHH
Confidence 0 1223555666666666655543
No 201
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=3e-08 Score=101.18 Aligned_cols=144 Identities=13% Similarity=0.198 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------ 278 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------ 278 (498)
+....+.+...+.. ...++.+||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~-----------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 7 LQPTYQQITQAFQQ-----------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred hHHHHHHHHHHHHc-----------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34556666665532 2345789999999999999999999988321
Q ss_pred EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 279 FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 279 ~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
++.+.+.+ ++ .-.-..++.+.+.+. ....-|++||++|.|. ....+.|++.++ .+.
T Consensus 76 ~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~-------------~~AaNaLLKtLE---EPp 135 (325)
T PRK06871 76 FHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT-------------EAAANALLKTLE---EPR 135 (325)
T ss_pred EEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhhC-------------HHHHHHHHHHhc---CCC
Confidence 12221110 11 112334555544443 2344699999999984 346778888887 345
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHh
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 398 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~ 398 (498)
..+++|.+|+.++.+.|.++||+ ..+.|++|+.++-.+.|...
T Consensus 136 ~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 55778889999999999999999 56899999999888888764
No 202
>PRK12377 putative replication protein; Provisional
Probab=98.99 E-value=2.7e-09 Score=104.98 Aligned_cols=141 Identities=19% Similarity=0.188 Sum_probs=82.9
Q ss_pred CCCCCCccccC----cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 212 SPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 212 ~~~~~~~~IvG----~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
....+|+++.. +..++..+.+.+..+. ....+++|+||||||||+||.+|++++ +..++.++.
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 45567888753 3334444444443221 123689999999999999999999988 677888888
Q ss_pred cccchhcccCcH--HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 285 SSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 285 s~l~~~~~G~~~--~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
.++......... .....+++.. ....+|+|||++..... +.....|+..++.-.....+ +|.|
T Consensus 138 ~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s-----------~~~~~~l~~ii~~R~~~~~p--tiit 202 (248)
T PRK12377 138 PDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET-----------KNEQVVLNQIIDRRTASMRS--VGML 202 (248)
T ss_pred HHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-----------HHHHHHHHHHHHHHHhcCCC--EEEE
Confidence 777654332110 0111223322 34679999999765322 11233455555543322222 4668
Q ss_pred eCCCC-----CCCHHHHhcc
Q 010888 363 TNLPW-----ELDAAMLRRL 377 (498)
Q Consensus 363 Tn~p~-----~Ld~al~~Rf 377 (498)
||... .+..++.+|+
T Consensus 203 SNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 203 TNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred cCCCHHHHHHHhhHHHHHHH
Confidence 98752 2555666665
No 203
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=1e-08 Score=112.82 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=101.7
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE-Eecc--
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISAS-- 285 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~-v~~s-- 285 (498)
.....+.++++++|++...+.++.++..... ...+.+.++|+||||||||++++.+|++++..+++ .+..
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 3346688999999999999999988754211 12333569999999999999999999998765433 2211
Q ss_pred -ccc-------------hhcccCcHHHHHHHHHHHH----------hcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 286 -SVV-------------SKWRGDSEKLIKVLFELAR----------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 286 -~l~-------------~~~~G~~~~~l~~~f~~a~----------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
... ..+. ......+.++..+. .....||+|||++.+... . .+ .+.
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~-s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~--------~~-~lq 216 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQ-SQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D--------TR-ALH 216 (637)
T ss_pred cccccccccchhhhhcccccc-chHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h--------HH-HHH
Confidence 000 0011 11223344444443 124579999999987532 1 11 222
Q ss_pred HHHH-HhhCCccCCCcEEEEEEeCCCC----------C----CCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCC
Q 010888 342 ELLI-QMDGLTQSDELVFVLAATNLPW----------E----LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 342 ~Ll~-~ld~~~~~~~~viVIaaTn~p~----------~----Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
.++. ... ......+|+++|..+. . |.+++++ |. ..|.|.+.........|+..+...
T Consensus 217 ~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 217 EILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 2333 111 1222223333442221 1 4478886 55 468999999999777777777543
No 204
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=3.5e-08 Score=101.36 Aligned_cols=154 Identities=13% Similarity=0.158 Sum_probs=101.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------EEEEeccccchhcccCcHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFE 304 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------~i~v~~s~l~~~~~G~~~~~l~~~f~ 304 (498)
+.++.+||+||+|+||+++|.++|+.+-+. ++.+.+..- . ..-.-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHHH
Confidence 445789999999999999999999988321 122211100 0 0012334455444
Q ss_pred HHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccce
Q 010888 305 LAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 380 (498)
Q Consensus 305 ~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~ 380 (498)
.+. .....|++||++|.|. ....+.|++.++ .+...+++|..|+.++.|-|.++||+. .
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq-~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT-------------DAAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCR-L 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC-------------HHHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhccc-c
Confidence 433 3445799999999984 346788999887 345567888899999999999999995 5
Q ss_pred eEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHH
Q 010888 381 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR 426 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~ 426 (498)
+.+++|+.++....|.... ... ......++..+.|-.+..+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 8999999888888776432 111 11233455556664444443
No 205
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.99 E-value=1.5e-08 Score=103.14 Aligned_cols=68 Identities=35% Similarity=0.399 Sum_probs=46.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEecccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSV 287 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l 287 (498)
+....+.++|+.++++..--.+.+-. ...-.++++||.||||||||.+|-++|+++| .||..++++++
T Consensus 19 ~~~~~~GlVGQ~~AReAagiiv~mIk-------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 19 ARYIADGLVGQEKAREAAGIIVDMIK-------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp B-SEETTEES-HHHHHHHHHHHHHHH-------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred EeeccccccChHHHHHHHHHHHHHHh-------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 34446789999999998875544321 1223458999999999999999999999996 78877666554
No 206
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.2e-10 Score=108.90 Aligned_cols=132 Identities=27% Similarity=0.388 Sum_probs=89.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcc---CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hcccC
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTG---LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~---~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G~ 294 (498)
-++|++.+|+.|.-++....++-..... ..-.-.++||.||+|||||+||+.+|+.++.||.--++..+.. .|+|+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGE 141 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGE 141 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccch
Confidence 3689999999887555332221111100 1122258999999999999999999999999999999988864 57776
Q ss_pred c-HHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCC
Q 010888 295 S-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 295 ~-~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~ 350 (498)
- +..+..++..+. ....+||+|||||.++.+.....- ..-...-++..||..++|.
T Consensus 142 DVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 142 DVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 4 444455554432 233589999999999876543221 1112345778899999864
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.98 E-value=6.1e-09 Score=96.13 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=88.2
Q ss_pred CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------e
Q 010888 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------T 278 (498)
Q Consensus 222 G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-----------------------~ 278 (498)
|++++++.|...+.. ...++.+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 788888999887744 234567999999999999999999998721 1
Q ss_pred EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 279 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 279 ~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
++.++...-.. .-....++.+...+.. ...-|++|||+|.|. ....+.|+..|+. ..
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-------------~~a~NaLLK~LEe---pp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-------------EEAQNALLKTLEE---PP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHS---TT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-------------HHHHHHHHHHhcC---CC
Confidence 23332221100 1123445555554432 345699999999984 4477889999983 34
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecC
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~ 385 (498)
..+.+|.+|+.+..+-+.++||+ ..+.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 55788889999999999999999 4466654
No 208
>PRK08116 hypothetical protein; Validated
Probab=98.96 E-value=4.7e-09 Score=104.71 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=78.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhccc----CcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRG----DSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G----~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
...+++|+|+||||||+||.++++++ +.+++.++..++...+.. ........+++... ...+|+|||++.-
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34679999999999999999999987 788999998877654321 11111222333322 3469999999642
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-CC----CCHHHHhcc---cceeEecCCCHHHHHHH
Q 010888 323 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRL---EKRILVPLPDTEARRAM 394 (498)
Q Consensus 323 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-~~----Ld~al~~Rf---~~~i~~~~Pd~~eR~~I 394 (498)
... ...+..|+..++....... .+|.|||.+ .. ++.++.+|+ ...+.+.-||. |..+
T Consensus 191 ~~t-----------~~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 191 RDT-----------EWAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred CCC-----------HHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHH
Confidence 111 2233445555654322222 356688775 22 466788875 23455555554 4444
Q ss_pred HHH
Q 010888 395 FES 397 (498)
Q Consensus 395 L~~ 397 (498)
.+.
T Consensus 256 ~~e 258 (268)
T PRK08116 256 AKE 258 (268)
T ss_pred HHH
Confidence 433
No 209
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.95 E-value=1.8e-08 Score=108.32 Aligned_cols=145 Identities=26% Similarity=0.324 Sum_probs=92.0
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEec------
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA------ 284 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~------ 284 (498)
..|.++.|+..+++.+.-. .....+++|.||||+|||++++.++..+. ...+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 3688889988877765422 23457899999999999999999998652 11222211
Q ss_pred c-----cc-------------chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHH
Q 010888 285 S-----SV-------------VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 346 (498)
Q Consensus 285 s-----~l-------------~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ 346 (498)
. .+ .....|.........+..|.. ++|||||++.+. ..+++.|.+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-------------~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-------------RRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-------------HHHHHHHHHH
Confidence 0 00 001112211112234444443 799999998764 3456666666
Q ss_pred hhCCc----------cCCCcEEEEEEeCCCC---------------------CCCHHHHhcccceeEecCCCHH
Q 010888 347 MDGLT----------QSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRILVPLPDTE 389 (498)
Q Consensus 347 ld~~~----------~~~~~viVIaaTn~p~---------------------~Ld~al~~Rf~~~i~~~~Pd~~ 389 (498)
|+.-. ....++.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 64221 1234588999998752 3777999999999999988654
No 210
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.94 E-value=1.3e-08 Score=104.99 Aligned_cols=162 Identities=25% Similarity=0.320 Sum_probs=107.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec---------
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------- 284 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~--------- 284 (498)
...|..++|++..|..|.-....| .-.++||.|+.|||||+++|+++.-+.-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 467889999999999887654332 33689999999999999999999987211111111
Q ss_pred ----c-------------------ccchhcccCcHHHH-H-----HHHH----------HHHhcCCeEEEEcCccchhhh
Q 010888 285 ----S-------------------SVVSKWRGDSEKLI-K-----VLFE----------LARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 285 ----s-------------------~l~~~~~G~~~~~l-~-----~~f~----------~a~~~~p~VL~IDEiD~l~~~ 325 (498)
. .+...-.|.++..+ . ...+ .++.+ .+||++||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc--
Confidence 0 01111123333311 1 1111 11222 2799999998874
Q ss_pred ccccchhhHHHHHHHHHHHHHhh---------CCc-cCCCcEEEEEEeCCC-CCCCHHHHhcccceeEecCC-CHHHHHH
Q 010888 326 RGEARSEHEASRRLKTELLIQMD---------GLT-QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRA 393 (498)
Q Consensus 326 r~~~~~~~~~~~~i~~~Ll~~ld---------~~~-~~~~~viVIaaTn~p-~~Ld~al~~Rf~~~i~~~~P-d~~eR~~ 393 (498)
..+++.|+..+. |++ ....++++|+|+|.- ..|-+.|++||...+....| +.++|.+
T Consensus 158 -----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 -----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred -----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHH
Confidence 336666666654 221 123468889999886 45999999999999988776 7888999
Q ss_pred HHHHhcCC
Q 010888 394 MFESLLPS 401 (498)
Q Consensus 394 IL~~~l~~ 401 (498)
|.+..+.-
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 99987754
No 211
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.94 E-value=3.2e-08 Score=106.84 Aligned_cols=228 Identities=20% Similarity=0.220 Sum_probs=139.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEeccccc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVV 288 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~~s~l~ 288 (498)
.+.+.+...+++...+...+.. -.....+.+.|-||||||..++.+-.++ ...++.+|+-.+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 4555566666666655544321 0122478999999999999999998866 3567888886664
Q ss_pred hh----------cccCcH------HHHHHHHHHH-HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 289 SK----------WRGDSE------KLIKVLFELA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 289 ~~----------~~G~~~------~~l~~~f~~a-~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
+. +.|... ..+...|... ....++||+|||+|.|.... +.-|+..++...
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------------QdVlYn~fdWpt 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------------QDVLYNIFDWPT 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-------------HHHHHHHhcCCc
Confidence 32 112211 1122222211 23457899999999997542 345778888887
Q ss_pred cCCCcEEEEEEeCCCCC----CCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHH
Q 010888 352 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR 426 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~~----Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~ 426 (498)
..+..++||+.+|..+. |...+.+|++ ..+.|.+++..+..+|+..++.....-....++-+|++....||.
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD--- 613 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD--- 613 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc---
Confidence 77888888888877543 3334445664 457889999999999999999776322222233334444444432
Q ss_pred HHHHHHHhHHHHHHHHHhhchhccCCCCC----CCCCCCCCHHHHHHHHhccCCChh
Q 010888 427 LVSKEAAMQPLRRLMVLLEGRQEVAPDDE----LPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 427 ~L~~~A~~~a~rrl~~~le~~~~~~~~~~----~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
+||.+++++++.+++.... ......+++-|+.+|++.+..+..
T Consensus 614 ----------aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 614 ----------ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred ----------HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhH
Confidence 2333333333333222211 112234899999999999876653
No 212
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.4e-09 Score=111.72 Aligned_cols=48 Identities=44% Similarity=0.632 Sum_probs=41.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...|.||+|++.+|+.+.-.. ...+++|++||||||||++|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 357999999999999998654 345899999999999999999987654
No 213
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.93 E-value=6.5e-10 Score=97.40 Aligned_cols=110 Identities=31% Similarity=0.352 Sum_probs=60.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc-ccc-hhcccC----cHHHHHHHHHHHHh-cCCeEEEEcCccchhhh
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV-SKWRGD----SEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s-~l~-~~~~G~----~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 325 (498)
+|||+|+||+|||++|+++|+.++..|..|.+. ++. ++..|. ... ..|+..+. --..|+++||+....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrapp- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAPP- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS-H-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCCH-
Confidence 689999999999999999999999999988764 332 111111 000 00000000 0025999999987754
Q ss_pred ccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcEEEEEEeCCCC-----CCCHHHHhccc
Q 010888 326 RGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW-----ELDAAMLRRLE 378 (498)
Q Consensus 326 r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIaaTn~p~-----~Ld~al~~Rf~ 378 (498)
+.++.+++.|.... .-..+.+||||-|+.+ .|++++++||-
T Consensus 77 ------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 77 ------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 36777888876321 1234588899999764 58999999983
No 214
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.92 E-value=1.4e-09 Score=97.47 Aligned_cols=126 Identities=25% Similarity=0.359 Sum_probs=79.3
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeccccchhcccCcHH
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEK 297 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l~~~~~G~~~~ 297 (498)
+|.+...+++++.+... .....+|+|+|++||||+++|++++...+ .+++.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHH----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46677777777776442 24457899999999999999999999874 467777776543
Q ss_pred HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-C------CCC
Q 010888 298 LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W------ELD 370 (498)
Q Consensus 298 ~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-~------~Ld 370 (498)
..+++.+ .+++|||+|+|.+... .+..|+..++... ..++.+|+++..+ . .++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH-------------HHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchh
Confidence 2234443 5588999999999643 4455666665332 2334566666543 2 366
Q ss_pred HHHHhcccceeEecCC
Q 010888 371 AAMLRRLEKRILVPLP 386 (498)
Q Consensus 371 ~al~~Rf~~~i~~~~P 386 (498)
+.+..|+.. +.+.+|
T Consensus 122 ~~L~~~l~~-~~i~lP 136 (138)
T PF14532_consen 122 PDLYYRLSQ-LEIHLP 136 (138)
T ss_dssp HHHHHHCST-CEEEE-
T ss_pred HHHHHHhCC-CEEeCC
Confidence 777777743 344444
No 215
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.9e-08 Score=100.19 Aligned_cols=170 Identities=18% Similarity=0.172 Sum_probs=107.3
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe---------------------EEE
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFN 281 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---------------------~i~ 281 (498)
+..+.+.+...+.. ..-++.+||+||+|+||+++|.++|+.+-+. ++.
T Consensus 9 ~~~~~~~l~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDA-----------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 44666777766532 2345689999999999999999999977321 112
Q ss_pred Ee--ccccchh-cccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 282 IS--ASSVVSK-WRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 282 v~--~s~l~~~-~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
+. +..-..+ ...-.-..++.+.+.+.. ....|++||++|.|. ....+.|++.++. +.
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE---Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN-------------RAACNALLKTLEE---PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC-------------HHHHHHHHHHhhC---CC
Confidence 21 1000000 000123345555544432 234699999999984 3467788888873 33
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 425 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL 425 (498)
.++++|.+|+.++.+-|.++||+ ..+.|+.|+.++-...|... ... ..+...++..+.|-.+..+
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 45667778888999999999999 56899999998888777653 111 1123345555665544443
No 216
>PRK08181 transposase; Validated
Probab=98.91 E-value=4.5e-09 Score=104.61 Aligned_cols=128 Identities=20% Similarity=0.292 Sum_probs=77.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCc-HHHHHHHHHHHHhcCCeEEEEcCccchhhhc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~-~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r 326 (498)
..+++|+||||||||+|+.++++++ |..+++++..++........ .......+... ..+.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 4689999999999999999999866 77888888888776543211 01122233332 34679999999876543
Q ss_pred cccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC----------CCHHHHhccc---ceeEecCCCHHHHHH
Q 010888 327 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----------LDAAMLRRLE---KRILVPLPDTEARRA 393 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~----------Ld~al~~Rf~---~~i~~~~Pd~~eR~~ 393 (498)
......|+..++..... . -+|.|||.+.. +..++.+|+- ..+.+.-++...+..
T Consensus 183 ----------~~~~~~Lf~lin~R~~~-~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~~~ 249 (269)
T PRK08181 183 ----------QAETSVLFELISARYER-R--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRTA 249 (269)
T ss_pred ----------HHHHHHHHHHHHHHHhC-C--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhHHH
Confidence 11233444444432222 2 25668887621 3356667762 345555556554443
Q ss_pred H
Q 010888 394 M 394 (498)
Q Consensus 394 I 394 (498)
.
T Consensus 250 ~ 250 (269)
T PRK08181 250 L 250 (269)
T ss_pred H
Confidence 3
No 217
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.91 E-value=3.2e-08 Score=111.28 Aligned_cols=165 Identities=17% Similarity=0.165 Sum_probs=97.9
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhc---------cCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CeEEE
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFN 281 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~---------~~~~~~~~vLL~GppGtGKT~lAraia~~l~-------~~~i~ 281 (498)
-.|.|.+.+|+.+.-.+........... ...+...+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4789999999988755533221100000 1134446899999999999999999998653 34444
Q ss_pred EeccccchhcccC--cHHHH-HHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--------
Q 010888 282 ISASSVVSKWRGD--SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------- 350 (498)
Q Consensus 282 v~~s~l~~~~~G~--~~~~l-~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------- 350 (498)
+.+..... ..+. .+..+ .+.+. ....++++|||+|.+... .+..|+..|+.-
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCC
Confidence 44433211 0000 00000 01111 122479999999998543 445566666421
Q ss_pred --ccCCCcEEEEEEeCCCC-------------CCCHHHHhccccee-EecCCCHHHHHHHHHHhc
Q 010888 351 --TQSDELVFVLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLL 399 (498)
Q Consensus 351 --~~~~~~viVIaaTn~p~-------------~Ld~al~~Rf~~~i-~~~~Pd~~eR~~IL~~~l 399 (498)
..-+.++.||||+|+.+ .|++++++||+... ....|+.+.-..|-++.+
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 11234688999999752 27899999998764 446677666556555544
No 218
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1.1e-07 Score=96.94 Aligned_cols=144 Identities=16% Similarity=0.114 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------eE
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------TF 279 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-----------------------~~ 279 (498)
+.+..+.+...+.. .+.++.+||+||.|+||+++|+++|+.+-+ .+
T Consensus 8 l~~~~~~l~~~~~~-----------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDA-----------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 44666667665532 244578999999999999999999997732 12
Q ss_pred EEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC
Q 010888 280 FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 355 (498)
Q Consensus 280 i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 355 (498)
+.+.+.. .++. -.-..++.+.+.+. .....|++||++|.|. ....+.|++.++. +..
T Consensus 77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE---Pp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN-------------ESASNALLKTLEE---PAP 137 (319)
T ss_pred EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC-------------HHHHHHHHHHhcC---CCC
Confidence 2222211 0010 12234455444433 2335799999999984 3467788888873 445
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHH
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
++++|..|+.++.+-|.++||+ ..+.++.|+.++..+.|..
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 5778889999999999999999 5689999999988888765
No 219
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.7e-07 Score=97.42 Aligned_cols=239 Identities=17% Similarity=0.197 Sum_probs=148.2
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccccchh-
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK- 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~l~~~- 290 (498)
-..++|.+..++.+++++...+. ...+.++.+.|-||||||.+...+.... +...+++||.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 35689999999999999877654 3455789999999999999998776655 224588898764311
Q ss_pred ---------c----cc-CcHHHHHHHH-HHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 291 ---------W----RG-DSEKLIKVLF-ELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 291 ---------~----~G-~~~~~l~~~f-~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
+ .+ .........| ....+.. +-||++||+|.|....+. .++..++.-...+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-------------vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-------------VLYTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-------------eeeeehhcccCCc
Confidence 1 11 1111222222 2233333 679999999999844322 1333333334456
Q ss_pred CcEEEEEEeCCCCCCCHHHHh---c---ccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHhcCCcHHHHH
Q 010888 355 ELVFVLAATNLPWELDAAMLR---R---LEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIR 426 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~---R---f~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~--l~~La~~t~g~s~~dL~ 426 (498)
..+++|+.+|..+.-|..|-+ | -...+.|++++.++-.+||...+.........+ +.-.|++..|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 668888889987665544333 2 246789999999999999999998776654433 5567788888776 676
Q ss_pred HHH---HHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 427 LVS---KEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 427 ~L~---~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
.++ ++|...+-.+..... .....+...-.....|..+++..++.++.-+..
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~--~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKIL--DDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--ccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 643 333332222211111 001112221112245678899999888765543
No 220
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.88 E-value=4.2e-08 Score=97.94 Aligned_cols=201 Identities=20% Similarity=0.274 Sum_probs=113.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccch
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~~ 289 (498)
..||...+++.+... ...+.+|. .....++||+|++|.|||++++.....- ..|++.+.+..-.+
T Consensus 35 rWIgY~~A~~~L~~L-~~Ll~~P~-----~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRL-EELLEYPK-----RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHH-HHHHhCCc-----ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 456666666555543 22222332 2234689999999999999999998755 25677776532211
Q ss_pred --------------hc--ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC
Q 010888 290 --------------KW--RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 353 (498)
Q Consensus 290 --------------~~--~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 353 (498)
.+ .....+....+....+..++.+|+|||++.++.... . -+..++..+..+.+.
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~----~qr~~Ln~LK~L~Ne 178 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------R----KQREFLNALKFLGNE 178 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------H----HHHHHHHHHHHHhhc
Confidence 11 011223333445666677788999999999864321 1 122233333333222
Q ss_pred CCcEEEEEE-eCCC---CCCCHHHHhcccceeEecCC-CHHHHHHHHHHhcCCCCCCCC--CCHHH----HHHHhcCCcH
Q 010888 354 DELVFVLAA-TNLP---WELDAAMLRRLEKRILVPLP-DTEARRAMFESLLPSQTGEES--LPYDL----LVERTEGYSG 422 (498)
Q Consensus 354 ~~~viVIaa-Tn~p---~~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~~~l~~~~~~~~--~~l~~----La~~t~g~s~ 422 (498)
-. +.+|+. |... -.-|+.+.+||.. +.+|.- ..++...++..+-...++... ..-.+ +-..+.|.+|
T Consensus 179 L~-ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 179 LQ-IPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred cC-CCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 22 223333 2211 2358899999954 455442 334455666666555554422 22233 4455677664
Q ss_pred HHHHHHHHHHHhHHHH
Q 010888 423 SDIRLVSKEAAMQPLR 438 (498)
Q Consensus 423 ~dL~~L~~~A~~~a~r 438 (498)
++..+++.|+..|++
T Consensus 257 -~l~~ll~~aA~~AI~ 271 (302)
T PF05621_consen 257 -ELSRLLNAAAIAAIR 271 (302)
T ss_pred -HHHHHHHHHHHHHHh
Confidence 788999999998886
No 221
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.7e-08 Score=103.72 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=92.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------------------------EEEEeccccc---------------
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT-------------------------FFNISASSVV--------------- 288 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~-------------------------~i~v~~s~l~--------------- 288 (498)
+.++++||+||+|+||+++|+++|+.+.+. ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445789999999999999999999988432 1122111000
Q ss_pred ---hh-----cccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCc
Q 010888 289 ---SK-----WRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 356 (498)
Q Consensus 289 ---~~-----~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 356 (498)
++ ...-.-..++.+.+.+. .....|++||++|.|. ....+.||+.++ .+...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLE---EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-------------VAAANALLKTLE---EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-------------HHHHHHHHHHhc---CCCcC
Confidence 00 00012234455544433 2334699999999984 346678888887 34555
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHh
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 398 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~ 398 (498)
+++|.+|+.++.|.|.++||+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 788889999999999999999 67999999999998888764
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.88 E-value=2.6e-08 Score=97.83 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=81.7
Q ss_pred CCCCCCccccC----cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 212 SPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 212 ~~~~~~~~IvG----~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
....+|+++.- +..+...+.+.+... .....+++|+|+||||||+|+.++++++ +..++.++.
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~----------~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEF----------DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhh----------ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 34567888753 223444444433221 1123589999999999999999999988 778888988
Q ss_pred cccchhcccCc---HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 285 SSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 285 s~l~~~~~G~~---~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
+++.....+.. ......+++... ...+|+|||++..... +....+ +...++.-..... .+|.
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s--------~~~~~~---l~~Ii~~Ry~~~~--~tii 200 (244)
T PRK07952 136 ADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTES--------RYEKVI---INQIVDRRSSSKR--PTGM 200 (244)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCCC--------HHHHHH---HHHHHHHHHhCCC--CEEE
Confidence 88775443211 111223333333 4689999999875321 111223 3333332222222 3566
Q ss_pred EeCCCC-----CCCHHHHhcc
Q 010888 362 ATNLPW-----ELDAAMLRRL 377 (498)
Q Consensus 362 aTn~p~-----~Ld~al~~Rf 377 (498)
|||... .+...+.+|+
T Consensus 201 tSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 201 LTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred eCCCCHHHHHHHhChHHHHHH
Confidence 888752 2556666666
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.87 E-value=7.5e-08 Score=98.77 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=49.2
Q ss_pred Cc-cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------eEEEEec
Q 010888 217 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA 284 (498)
Q Consensus 217 ~~-~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-------~~i~v~~ 284 (498)
|+ ++.|+++++.++.+.+..... +.....+.++|+||||||||++|+++++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 66 899999999999988755431 12234467899999999999999999999965 7777765
No 224
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.1e-08 Score=105.00 Aligned_cols=99 Identities=27% Similarity=0.498 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc-hhcccC-cHHHHHHHHHHHH----hcCCeEEEEcCccchhhh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGD-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~-~~~~G~-~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~ 325 (498)
.+|||.||+|+|||+||+.+|+-++.||.-.+|..+. ..|+|+ .+..+..++..|. ..+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 5899999999999999999999999999999999886 457775 4555666665543 234589999999999843
Q ss_pred ccccc-hhhHHHHHHHHHHHHHhhCC
Q 010888 326 RGEAR-SEHEASRRLKTELLIQMDGL 350 (498)
Q Consensus 326 r~~~~-~~~~~~~~i~~~Ll~~ld~~ 350 (498)
...-. ...-..+-++..||..++|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 32111 11111245778899998864
No 225
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.82 E-value=3.9e-08 Score=97.72 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=109.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------EEE
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------FFN 281 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------~i~ 281 (498)
+..+.++..++++++++++...+.+....+ .-.+.|+|||||||||....+.|..+-.+ +..
T Consensus 31 wvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 31 WVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred CccCCCCchhhhHhcCCchhhHHHHhccCC------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 345567788999999999999888874321 12389999999999999999999988543 223
Q ss_pred EeccccchhcccCcHHHHHHHHHHHHh-------cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 282 ISASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 282 v~~s~l~~~~~G~~~~~l~~~f~~a~~-------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
+++++-.+. + ..+..-..|...+. ..+.++++||+|++..+ .+++|-..++.+ .
T Consensus 99 lnaSd~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-------------AQnALRRviek~---t 159 (360)
T KOG0990|consen 99 LNASDDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-------------AQNALRRVIEKY---T 159 (360)
T ss_pred hhccCccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-------------HHHHHHHHHHHh---c
Confidence 344433222 1 11222233444442 25679999999999644 344444444433 2
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 405 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~ 405 (498)
.++.+...+|.+..+.+++++||.. +.|.+-+...-...+.++++.....
T Consensus 160 ~n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 160 ANTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred cceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchhh
Confidence 3456667889999999999999965 5565556666666677776554443
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.82 E-value=2.1e-08 Score=102.71 Aligned_cols=113 Identities=21% Similarity=0.316 Sum_probs=70.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC---cHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~---~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
..+++|+||||||||+|+.+||+++ |..+++++..++....... ........++.. ....+|+|||++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 3789999999999999999999987 7888999988876544211 000111112222 2457999999977632
Q ss_pred hccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-CC----CCHHHHhccc
Q 010888 325 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE 378 (498)
Q Consensus 325 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-~~----Ld~al~~Rf~ 378 (498)
. ....+.|+..++.......+ +|.|||.+ .. +++++.+|+.
T Consensus 261 t-----------~~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 261 T-----------EFSKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred C-----------HHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence 2 22334455555543322222 45577764 22 4667777763
No 227
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=5.3e-07 Score=88.09 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=119.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-C--CeE---------
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K--TTF--------- 279 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~--~~~--------- 279 (498)
..+.+++.+.+.++....++..... ..-.++++|||+|+||-|.+-++-+++ | .+=
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 4566788899999998888876521 112589999999999999999999988 2 111
Q ss_pred -----------------EEEeccccchhcccCcH-HHHHHHHHHHHhcC---------CeEEEEcCccchhhhccccchh
Q 010888 280 -----------------FNISASSVVSKWRGDSE-KLIKVLFELARHHA---------PSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 280 -----------------i~v~~s~l~~~~~G~~~-~~l~~~f~~a~~~~---------p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
+++++++ .|... -.++.+++...+.. ..+++|.|+|.|..+
T Consensus 75 tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d------- 142 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD------- 142 (351)
T ss_pred cCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH-------
Confidence 1222222 23222 23455555544332 359999999998543
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HH
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YD 411 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~ 411 (498)
.+..|-..|+.+. .++.+|..+|....+-+++++|+ ..+.+|.|+.++-..++...+.+..+....+ +.
T Consensus 143 ------AQ~aLRRTMEkYs---~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 143 ------AQHALRRTMEKYS---SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred ------HHHHHHHHHHHHh---cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 4444555555333 23667888999889999999999 6689999999999999999998877764432 34
Q ss_pred HHHHHhcC
Q 010888 412 LLVERTEG 419 (498)
Q Consensus 412 ~La~~t~g 419 (498)
.+++.+.|
T Consensus 213 rIa~kS~~ 220 (351)
T KOG2035|consen 213 RIAEKSNR 220 (351)
T ss_pred HHHHHhcc
Confidence 45554443
No 228
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.71 E-value=3.4e-07 Score=89.96 Aligned_cols=89 Identities=24% Similarity=0.247 Sum_probs=59.4
Q ss_pred CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC-------------CCCCCHHHHhc
Q 010888 310 APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-------------PWELDAAMLRR 376 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~-------------p~~Ld~al~~R 376 (498)
-|+||||||++.|- -.....|...+++ .-.++ ||.+||+ |..+++.+++|
T Consensus 296 vPGVLFIDEVhMLD-------------iEcFTyL~kalES---~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-------------IECFTYLHKALES---PIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhhh-------------hHHHHHHHHHhcC---CCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 48899999998772 2344555555552 22334 5566664 34588999999
Q ss_pred ccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHH
Q 010888 377 LEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVER 416 (498)
Q Consensus 377 f~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~ 416 (498)
+ .++..-+++.++-++|++.+.....+..+. .++.++..
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 8 567777778888889999988777666443 34444443
No 229
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.68 E-value=2.7e-07 Score=101.97 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=44.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..|+..|++++|++++++.|...+.. .++++|+||||||||++++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 45678899999999999999886642 24799999999999999999999774
No 230
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.5e-07 Score=96.46 Aligned_cols=132 Identities=16% Similarity=0.202 Sum_probs=89.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------------eEEEEecccc---chhc-ccCcHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSV---VSKW-RGDSEKLI 299 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~-------------------------~~i~v~~s~l---~~~~-~G~~~~~l 299 (498)
+.++.+||+||+|+|||++|+.+|+.+.+ .++.+++..- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44578999999999999999999998732 1334433110 0000 00123445
Q ss_pred HHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh
Q 010888 300 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 375 (498)
Q Consensus 300 ~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~ 375 (498)
+.+.+.+.. ....|++||+++.+-. ...+.++..++... ..+.+|.+|+.+..+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-------------~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL-------------QAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH-------------HHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHH
Confidence 666555543 3346999999998843 35566777777543 225566688888899999999
Q ss_pred cccceeEecCCCHHHHHHHHHH
Q 010888 376 RLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 376 Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
|+ ..+.|++|+.++....|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 5688999999888877765
No 231
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.5e-07 Score=105.86 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=92.9
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc-------
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV------- 288 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~------- 288 (498)
.|+|++++...+.+++....... .+. .+...+||.||.|+|||-+|+++|..+ .-.++.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl---~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL---KDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc---CCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 58899999999999886643211 111 467889999999999999999999988 5678999998632
Q ss_pred --hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC--c------cCCCcEE
Q 010888 289 --SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSDELVF 358 (498)
Q Consensus 289 --~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~------~~~~~vi 358 (498)
..|+|..+. ..+.+..+....+||+|||||... ..+++.|++.+|.- . -.-.+++
T Consensus 639 sp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh-------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 639 SPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAH-------------PDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred CCcccccchhH--HHHHHHHhcCCceEEEEechhhcC-------------HHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 235554333 456777778888999999998764 33666677777632 1 1224688
Q ss_pred EEEEeCC
Q 010888 359 VLAATNL 365 (498)
Q Consensus 359 VIaaTn~ 365 (498)
||.|+|.
T Consensus 704 ~IMTsn~ 710 (898)
T KOG1051|consen 704 FIMTSNV 710 (898)
T ss_pred EEEeccc
Confidence 8989775
No 232
>PRK06526 transposase; Provisional
Probab=98.67 E-value=2.7e-08 Score=98.37 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=49.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC-cHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~-~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
....+++|+||||||||++|.+++.++ |..+..+++.++....... ........+... ..+.+|+|||++.+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 345789999999999999999999876 6777777777665443211 001111222222 3468999999987743
No 233
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.65 E-value=1.8e-08 Score=94.42 Aligned_cols=72 Identities=28% Similarity=0.464 Sum_probs=48.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCc-HHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~-~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
....+++|+||||||||++|.++++++ |.++..++.+++........ .......+.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 345799999999999999999999877 88899999988876543210 011222333333 3579999999654
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.61 E-value=2.2e-07 Score=92.02 Aligned_cols=72 Identities=26% Similarity=0.419 Sum_probs=52.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcHH-HHH-HHHHHHHhcCCeEEEEcCccchh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEK-LIK-VLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~~-~l~-~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
...+++|+||||||||+||.||++++ |.+++.++.+++.......... ... .+.... ....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCcc
Confidence 45799999999999999999999988 7889999998887664432221 111 111112 234799999997764
No 235
>PRK09183 transposase/IS protein; Provisional
Probab=98.60 E-value=9.4e-08 Score=94.93 Aligned_cols=75 Identities=25% Similarity=0.317 Sum_probs=50.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC-cHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~-~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
....+++|+||||||||+++.+++.+. |..+..+++.++...+... ....+...+... ...+.+|+|||++....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 345789999999999999999998764 7778888877765443211 011123334332 24568999999987643
No 236
>PRK06921 hypothetical protein; Provisional
Probab=98.58 E-value=1.9e-07 Score=93.00 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
..+++|+||||||||+|+.+|++++ +..+++++..++........ ......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 4689999999999999999999986 56778888766654432111 111122222 23458999999944
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.57 E-value=2.1e-07 Score=89.32 Aligned_cols=180 Identities=21% Similarity=0.273 Sum_probs=92.6
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---eEEEEec-cccc--------
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISA-SSVV-------- 288 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~---~~i~v~~-s~l~-------- 288 (498)
+|.+...+.|.+.+.. .+...++|+||.|+|||++++.+.+.... ..+++.. ....
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5667777777765532 23468999999999999999999998832 1122211 0000
Q ss_pred -------------h-hc------------ccCcHHHHHHHHHHHHhc-CCeEEEEcCccchh-hhccccchhhHHHHHHH
Q 010888 289 -------------S-KW------------RGDSEKLIKVLFELARHH-APSTIFLDEIDAII-SQRGEARSEHEASRRLK 340 (498)
Q Consensus 289 -------------~-~~------------~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~-~~r~~~~~~~~~~~~i~ 340 (498)
. .. .......+..+++..... ...||+|||++.+. .... ...+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~ 141 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFL 141 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHH
Confidence 0 00 011233445555555443 34899999999997 2111 13455
Q ss_pred HHHHHHhhCCccCCCcEEEEEEeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCC--CCCCCHHHH
Q 010888 341 TELLIQMDGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLL 413 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaaTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~--~~~~~l~~L 413 (498)
..+...++.........+|+++++.. ..-...+..|+.. +.+++-+.++..++++..+..... ..+.+++.+
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i 220 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEI 220 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 55666666533333434444444321 0112234457766 899999999999999987655411 134456667
Q ss_pred HHHhcCCc
Q 010888 414 VERTEGYS 421 (498)
Q Consensus 414 a~~t~g~s 421 (498)
...+.|..
T Consensus 221 ~~~~gG~P 228 (234)
T PF01637_consen 221 YSLTGGNP 228 (234)
T ss_dssp HHHHTT-H
T ss_pred HHHhCCCH
Confidence 77676643
No 238
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.56 E-value=1.6e-06 Score=93.81 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=114.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE-ecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v-~~s~l 287 (498)
.....+.+.+||+-...-.++++.++..... ...+.+-+||+||||||||++++.+|++++..+.+- ++..+
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~ 82 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSF 82 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCc
Confidence 3456678889999999888888888865321 112334678899999999999999999998877653 22221
Q ss_pred c------hhcccCcH------HH---HHHH-HHHHH-----------hcCCeEEEEcCccchhhhccccchhhHHHHHHH
Q 010888 288 V------SKWRGDSE------KL---IKVL-FELAR-----------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 340 (498)
Q Consensus 288 ~------~~~~G~~~------~~---l~~~-f~~a~-----------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 340 (498)
. ..+.+... .. ...+ +...+ ...+.||+|||+-.+.... ...+.
T Consensus 83 ~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~---------~~~f~ 153 (519)
T PF03215_consen 83 RESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD---------TSRFR 153 (519)
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh---------HHHHH
Confidence 0 11111100 01 1111 11111 1245799999997654321 13344
Q ss_pred HHHHHHhhCCccCCCcEEEEEE-e------CCC--------CCCCHHHHhcc-cceeEecCCCHHHHHHHHHHhcCCC--
Q 010888 341 TELLIQMDGLTQSDELVFVLAA-T------NLP--------WELDAAMLRRL-EKRILVPLPDTEARRAMFESLLPSQ-- 402 (498)
Q Consensus 341 ~~Ll~~ld~~~~~~~~viVIaa-T------n~p--------~~Ld~al~~Rf-~~~i~~~~Pd~~eR~~IL~~~l~~~-- 402 (498)
+.|...+..- ...++++|.+ + |.. ..+++.++... -..|.|.+-...-.+..|+..+...
T Consensus 154 ~~L~~~l~~~--~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~ 231 (519)
T PF03215_consen 154 EALRQYLRSS--RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR 231 (519)
T ss_pred HHHHHHHHcC--CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 4454444421 1115666655 1 111 13567777632 2557776666655555555554433
Q ss_pred ---C--CCCC-CC-HHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 403 ---T--GEES-LP-YDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 403 ---~--~~~~-~~-l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
. ...+ .. ++.|+..+. +||+.++......+.
T Consensus 232 ~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 232 SSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 1 1111 22 556666544 488877765554444
No 239
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=4e-07 Score=80.44 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=47.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
+.++|+||.|+|||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999999999999886 88888888766432111111 222222222225689999999887
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.51 E-value=3.3e-07 Score=93.14 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=50.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcH-HHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~-~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
..++++|+||+|||||+|+.++|+++ |.++..++.+++......... ......++.. ....+|+|||++.-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 45799999999999999999999998 778888888777654332111 1122333333 34579999999764
No 241
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.47 E-value=9.7e-07 Score=77.47 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=48.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCeEEEEeccccchh--------------cc--cCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WR--GDSEKLIKVLFELA 306 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l--------~~~~i~v~~s~l~~~--------------~~--G~~~~~l~~~f~~a 306 (498)
.+.++++||||+|||++++.+++.+ ..+++.+++...... .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3679999999999999999999988 678888877543310 01 12233344455555
Q ss_pred HhcCCeEEEEcCccchh
Q 010888 307 RHHAPSTIFLDEIDAII 323 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~ 323 (498)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55555699999999874
No 242
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.47 E-value=9.4e-07 Score=96.95 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=86.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccchhcccCc--HHHH--------HHHHHHHHhcCCeEEEEcCc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEI 319 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~~~~G~~--~~~l--------~~~f~~a~~~~p~VL~IDEi 319 (498)
.+|+|.|++|||||+++++++.-+. .||..+..+.-....+|.. +..+ ..++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 6899999999999999999999884 5888887765555555543 1111 12222222 379999999
Q ss_pred cchhhhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCC---CCCCHHHHhcccceeEecCC
Q 010888 320 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 320 D~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p---~~Ld~al~~Rf~~~i~~~~P 386 (498)
..+. ..+++.|++.|+.-. ....+.++|++-|.. +.|++++++||...+.+..|
T Consensus 103 n~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ccCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 8774 457788888886321 112346777764332 34999999999999999988
Q ss_pred CHHH
Q 010888 387 DTEA 390 (498)
Q Consensus 387 d~~e 390 (498)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
No 243
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.41 E-value=2.9e-06 Score=91.66 Aligned_cols=172 Identities=23% Similarity=0.247 Sum_probs=89.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec-cccch--hcc-
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA-SSVVS--KWR- 292 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~-s~l~~--~~~- 292 (498)
+|.|++++|+.|.-.+.-- ..+.+.. .....-++||+|.||||||.+.+.+++-+..-.+.-.. +.-.+ .++
T Consensus 430 sIye~edvKkglLLqLfGG--t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGG--TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhcC--CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 6788999999887554321 1111121 13444689999999999999999999977443321110 00000 000
Q ss_pred --cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH-HhhCC-ccCCCcEEEEEEeCCCC-
Q 010888 293 --GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI-QMDGL-TQSDELVFVLAATNLPW- 367 (498)
Q Consensus 293 --G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~-~ld~~-~~~~~~viVIaaTn~p~- 367 (498)
+++.+.+-+- ...-....++..|||+|+|........ +++ +..+-+. .-.|+ ..-+.+.-|+|++|+..
T Consensus 508 rd~dtkqlVLes-GALVLSD~GiCCIDEFDKM~dStrSvL--hEv---MEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 KDPDTRQLVLES-GALVLSDNGICCIDEFDKMSDSTRSVL--HEV---MEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred ecCccceeeeec-CcEEEcCCceEEchhhhhhhHHHHHHH--HHH---HHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 0111110000 000112357899999999943221111 111 1111111 11122 23344466889998542
Q ss_pred ------------CCCHHHHhccccee-EecCCCHHHHHHHHHHh
Q 010888 368 ------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESL 398 (498)
Q Consensus 368 ------------~Ld~al~~Rf~~~i-~~~~Pd~~eR~~IL~~~ 398 (498)
.|++.|++||+.++ .+..||...-+.+-.++
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 28999999998754 34556666444444443
No 244
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.40 E-value=2.7e-05 Score=77.07 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=77.8
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC------------CCCCCHHHHhccc
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 378 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~------------p~~Ld~al~~Rf~ 378 (498)
|+||||||++.|--. ..+-|-..++ ..-.+++ |.+||+ |..++-.+++|.
T Consensus 289 pGVLFIDEvHMLDIE-------------cFsFlNrAlE---~d~~Pii-imaTNrgit~iRGTn~~SphGiP~D~lDR~- 350 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIE-------------CFSFLNRALE---NDMAPII-IMATNRGITRIRGTNYRSPHGIPIDLLDRM- 350 (454)
T ss_pred cceEEEeeehhhhhH-------------HHHHHHHHhh---hccCcEE-EEEcCCceEEeecCCCCCCCCCcHHHhhhh-
Confidence 789999999876311 1222222222 2223344 445543 456888999998
Q ss_pred ceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCC
Q 010888 379 KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 457 (498)
Q Consensus 379 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~ 457 (498)
.++...+++.++-+.||+.++.......+.+ ++.|......-+-+.--.|+..|...+.+|.-
T Consensus 351 lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~---------------- 414 (454)
T KOG2680|consen 351 LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG---------------- 414 (454)
T ss_pred heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC----------------
Confidence 6677788899999999999987766554433 33333332222333333455555555555411
Q ss_pred CCCCCCHHHHHHHHhccCCC
Q 010888 458 QIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 458 ~~~~It~eD~~~AL~~~~ps 477 (498)
..+..+|++.+.+-+-..
T Consensus 415 --~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 415 --KVVEVDDIERVYRLFLDE 432 (454)
T ss_pred --ceeehhHHHHHHHHHhhh
Confidence 127889999888766443
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.37 E-value=3.7e-07 Score=91.25 Aligned_cols=137 Identities=22% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC-e--EEEEeccccchhcccCcHHHHHHHHHHH-----------HhcCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKT-T--FFNISASSVVSKWRGDSEKLIKVLFELA-----------RHHAPSTIF 315 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~-~--~i~v~~s~l~~~~~G~~~~~l~~~f~~a-----------~~~~p~VL~ 315 (498)
..+++||.||+|||||++++..-+.+.. . ...++++... +...++.+.+.. ...+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 3579999999999999999998877643 2 2334443321 222222222111 012336999
Q ss_pred EcCccchhhhccccchhhHHHHHHHHHHHHHhh--CCccC-------CCcEEEEEEeCCCC---CCCHHHHhcccceeEe
Q 010888 316 LDEIDAIISQRGEARSEHEASRRLKTELLIQMD--GLTQS-------DELVFVLAATNLPW---ELDAAMLRRLEKRILV 383 (498)
Q Consensus 316 IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld--~~~~~-------~~~viVIaaTn~p~---~Ld~al~~Rf~~~i~~ 383 (498)
|||+..-.++.-+.. ...+-|-+.++ |.-.. -.++.+|++++.+. .+++++.|.| ..+.+
T Consensus 106 iDDlN~p~~d~ygtq-------~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDKYGTQ-------PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNI 177 (272)
T ss_dssp EETTT-S---TTS---------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE-
T ss_pred ecccCCCCCCCCCCc-------CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEe
Confidence 999987765543221 12222222232 21111 13577888888643 4888999888 67899
Q ss_pred cCCCHHHHHHHHHHhcC
Q 010888 384 PLPDTEARRAMFESLLP 400 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~ 400 (498)
+.|+.+....|+..++.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999888888777664
No 246
>PF05729 NACHT: NACHT domain
Probab=98.35 E-value=5.8e-06 Score=75.07 Aligned_cols=140 Identities=19% Similarity=0.233 Sum_probs=74.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC--C------e-EEEEeccccchhcc------------cCcHHHHHH-HHHHHHhcC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK--T------T-FFNISASSVVSKWR------------GDSEKLIKV-LFELARHHA 310 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~--~------~-~i~v~~s~l~~~~~------------G~~~~~l~~-~f~~a~~~~ 310 (498)
-++|+|+||+|||++++.++..+. . + .+.+++.+....-. ......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998771 1 1 23333333221100 001111111 122333455
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhccc--ceeEecCCCH
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE--KRILVPLPDT 388 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~--~~i~~~~Pd~ 388 (498)
..+|+||.+|.+...... .........+...+......+ +.++.|++. .... .+.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~--~~liit~r~-~~~~-~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPG--VKLIITSRP-RAFP-DLRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCC--CeEEEEEcC-ChHH-HHHHhcCCCcEEEECCCCH
Confidence 679999999999754221 011222233333333211222 334444433 2222 2444333 3478888899
Q ss_pred HHHHHHHHHhcCC
Q 010888 389 EARRAMFESLLPS 401 (498)
Q Consensus 389 ~eR~~IL~~~l~~ 401 (498)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 247
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=2.5e-05 Score=78.56 Aligned_cols=170 Identities=12% Similarity=0.050 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE--EEec--------------cc
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF--NISA--------------SS 286 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i--~v~~--------------s~ 286 (498)
+..+++.++..+.. .+.++.+||+|| +||+++|+.+|+.+-+.-- .-.| .+
T Consensus 7 q~~~~~~L~~~~~~-----------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQ-----------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 44566666665533 244578999996 6899999999997732100 0000 11
Q ss_pred cchh-ccc--CcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 287 VVSK-WRG--DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 287 l~~~-~~G--~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
+.-- ..| -.-..++.+...+.. ....|++||++|.|. ....+.|++.++. +..++++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~-------------~~AaNaLLKtLEE---Pp~~t~~ 137 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH-------------VNAANSLLKVIEE---PQSEIYI 137 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC-------------HHHHHHHHHHhcC---CCCCeEE
Confidence 1000 001 123445555544432 234699999999985 3356788888873 4445778
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
|..|+.++.+-|.++||+ ..+.|+. +.+...+++... ... .+...++....| +++....+.+
T Consensus 138 iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~~~----g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 138 FLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLLEQK----GLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHHHHc----CCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 888888999999999999 5577765 555555555422 222 222334444555 5555555554
No 248
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=5.9e-06 Score=82.89 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=79.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe----------------EEEEeccccchhcccCcHHHHHHHHHHHHh----
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT----------------FFNISASSVVSKWRGDSEKLIKVLFELARH---- 308 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~----------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~---- 308 (498)
.-++.+||+||+|+||+.+|.++|+.+-+. ++.+.+.. .+.. -.-..++.+.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 445789999999999999999999987431 11121100 0000 123344555444432
Q ss_pred cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCC
Q 010888 309 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 309 ~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~P 386 (498)
...-|++||++|.|. ....+.|++.++. +..++++|..|+.++.+.|.++||+ ..+.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt-------------~~AaNaLLK~LEE---Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMT-------------LDAISAFLKVLED---PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcC-------------HHHHHHHHHHhhc---CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 334699999999985 3366788888873 4455778888888999999999999 44666654
No 249
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.33 E-value=2.7e-06 Score=93.83 Aligned_cols=169 Identities=24% Similarity=0.260 Sum_probs=96.3
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE-ecc---ccchh
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SAS---SVVSK 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v-~~s---~l~~~ 290 (498)
.-+|.|.+.+|+.+.-.+.... .+.... ..+..-+|||.|.||||||.|.+.+++-+-..++.- .++ .|...
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 4578999999999885543321 221111 134457899999999999999999999875444322 111 11111
Q ss_pred cccCcHHHHHHHHHHH---HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh---------CC-ccCCCcE
Q 010888 291 WRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD---------GL-TQSDELV 357 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a---~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld---------~~-~~~~~~v 357 (498)
.+-... ...+.-.+ -...++|.+|||+|.|... -...+...|+ |+ ..-+.+.
T Consensus 363 v~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 363 VVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred EEEccC--CCeEEEeCCEEEEecCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchhh
Confidence 100000 00000000 1134689999999988432 2233444443 11 1112345
Q ss_pred EEEEEeCCCC-------------CCCHHHHhcccceeEe-cCCCHHHHHHHHHHhcCCC
Q 010888 358 FVLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 358 iVIaaTn~p~-------------~Ld~al~~Rf~~~i~~-~~Pd~~eR~~IL~~~l~~~ 402 (498)
-|+||+|+.. .|++.+++||+..+.+ ..|+.+.-..+.++.+..+
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 5788888774 2789999999976655 3466665555555555433
No 250
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.32 E-value=9.4e-07 Score=86.91 Aligned_cols=77 Identities=25% Similarity=0.387 Sum_probs=51.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH------HhCCeEEEEeccccchh---------cccCcHHHHHHHHHHHHhcCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSK---------WRGDSEKLIKVLFELARHHAPSTI 314 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~------~l~~~~i~v~~s~l~~~---------~~G~~~~~l~~~f~~a~~~~p~VL 314 (498)
....+||.||+|.||+.+|+.|.. ++..+|++|||..+.+. ..|........--...+....++|
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 345799999999999999999965 45789999999877543 122211111111112233345799
Q ss_pred EEcCccchhhhc
Q 010888 315 FLDEIDAIISQR 326 (498)
Q Consensus 315 ~IDEiD~l~~~r 326 (498)
|+|||..+..+.
T Consensus 287 fldeigelgade 298 (531)
T COG4650 287 FLDEIGELGADE 298 (531)
T ss_pred ehHhhhhcCccH
Confidence 999999886553
No 251
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=7.8e-05 Score=75.49 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=85.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-----------e--EEEEeccccchhcccCcHHHHHHHHHHHHh-----cCCe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKT-----------T--FFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPS 312 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~-----------~--~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~-----~~p~ 312 (498)
.+.+||+|+.|+||+.+|+.+++.+-+ | +..++. .+. ...-..++.+.+...- ...-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~--~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDK--DLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCC--cCCHHHHHHHHHHhccCCcccCCce
Confidence 467889999999999999999998722 1 122220 011 0122344444444321 3557
Q ss_pred EEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHH
Q 010888 313 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 392 (498)
Q Consensus 313 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~ 392 (498)
|++||++|.+. ....+.|+..++. ++..+++|..|+.+..+-+.+++|+ ..+.+.+|+.++..
T Consensus 93 vvII~~~e~m~-------------~~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS-------------NSLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC-------------HHHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999998873 3356678888874 3444667777778888999999999 56899999888877
Q ss_pred HHHHH
Q 010888 393 AMFES 397 (498)
Q Consensus 393 ~IL~~ 397 (498)
..|..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 77665
No 252
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.29 E-value=8e-07 Score=95.17 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=101.4
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec----cccchh
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA----SSVVSK 290 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~----s~l~~~ 290 (498)
.-+..|.|.+.+|.-+.-.+.--......-.-.++..-+|+|.|.||||||-+.++++.-+-..+|.-.. +.|...
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 3367899999999998855533221111101114556789999999999999999999877554443211 111111
Q ss_pred cccCcHHHHHHHHHH--HHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh---------CC-ccCCCcEE
Q 010888 291 WRGDSEKLIKVLFEL--ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD---------GL-TQSDELVF 358 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~--a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld---------~~-~~~~~~vi 358 (498)
.+.+.+.. ...++. .--...+|..|||+|+|-.+. ...+.+.|+ |+ ..-+.+.-
T Consensus 422 VvkD~esg-df~iEAGALmLADnGICCIDEFDKMd~~d-------------qvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 422 VVKDEESG-DFTIEAGALMLADNGICCIDEFDKMDVKD-------------QVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred EEecCCCC-ceeeecCcEEEccCceEEechhcccChHh-------------HHHHHHHHHhheehheecceEEeecchhh
Confidence 11000000 000100 011234799999999995321 122333343 11 11123355
Q ss_pred EEEEeCCCC-------------CCCHHHHhcccce-eEecCCCHHHHHHHHHHhcCCCC
Q 010888 359 VLAATNLPW-------------ELDAAMLRRLEKR-ILVPLPDTEARRAMFESLLPSQT 403 (498)
Q Consensus 359 VIaaTn~p~-------------~Ld~al~~Rf~~~-i~~~~Pd~~eR~~IL~~~l~~~~ 403 (498)
||||+|+.. .+++++.+||+.. +.+..|++..-..|-++++..+.
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~ 546 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHR 546 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhc
Confidence 788888763 2789999999854 46677888888888877775543
No 253
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.24 E-value=1.7e-05 Score=77.38 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=74.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
.+-.+.||+|||||..++.+|+.+|.+++..+|++.. ....+.+++.-+... .+-+++||++.+..+.-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~-GaW~cfdefnrl~~~vL---- 101 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQS-GAWLCFDEFNRLSEEVL---- 101 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHHH----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhc-CchhhhhhhhhhhHHHH----
Confidence 5677899999999999999999999999999998764 334556666544443 37899999998854311
Q ss_pred hhHHHHHHHHHHHHHhhCCcc----------CCCcEEEEEEeCCC----CCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 332 EHEASRRLKTELLIQMDGLTQ----------SDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~ld~~~~----------~~~~viVIaaTn~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
+-. ......+...+..-.. -+...-+..|.|.. ..|++.++.-| +.+.+..||...-.+++-
T Consensus 102 -S~i-~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 102 -SVI-SQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp -HHH-HHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHHH
T ss_pred -HHH-HHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHHH
Confidence 001 1111222222221110 11224455566644 45888888877 668999999776555544
No 254
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.21 E-value=7.1e-06 Score=87.76 Aligned_cols=175 Identities=21% Similarity=0.233 Sum_probs=94.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHH
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 298 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~ 298 (498)
+|.|...+|..+.-.+..-..........++...+|||.|.||||||.+.|.+++-....++...-..-. +|-+...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa---vGLTa~v 526 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA---VGLTAYV 526 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc---cceeEEE
Confidence 6889999999998665332211111111245556899999999999999999999876655543221110 0000000
Q ss_pred -----HHHHHHHH---HhcCCeEEEEcCccchhhhccccchhhHHHHHH-----HHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 299 -----IKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-----KTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 299 -----l~~~f~~a---~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i-----~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
.+.+.-.+ -....+|.+|||+|+|-... ...-|++..+. ...+...++ .+..||+|+|+
T Consensus 527 ~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD--RtSIHEAMEQQSISISKAGIVtsLq------ArctvIAAanP 598 (854)
T KOG0477|consen 527 RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD--RTSIHEAMEQQSISISKAGIVTSLQ------ARCTVIAAANP 598 (854)
T ss_pred eeCCccceeeeccCeEEEccCceEEeehhhhhcccc--cchHHHHHHhcchhhhhhhHHHHHH------hhhhhheecCC
Confidence 00000000 01224789999999995432 12223322211 111222222 23557888887
Q ss_pred C---C----------CCCHHHHhcccceeEecC---CCHHHH--HHHHHHhcCCCCC
Q 010888 366 P---W----------ELDAAMLRRLEKRILVPL---PDTEAR--RAMFESLLPSQTG 404 (498)
Q Consensus 366 p---~----------~Ld~al~~Rf~~~i~~~~---Pd~~eR--~~IL~~~l~~~~~ 404 (498)
. + .|...+++||+....++. |..+++ .-++..+.+.++.
T Consensus 599 igGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~ 655 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPS 655 (854)
T ss_pred CCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCc
Confidence 3 2 367789999986555544 444443 3355555554443
No 255
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.20 E-value=7.2e-06 Score=85.91 Aligned_cols=210 Identities=19% Similarity=0.186 Sum_probs=116.2
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 295 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~ 295 (498)
-+|.|.+++|+.|.-.+.-..... ...+ .+..-+|+|.|.||+-||.|.+.|.+-.-...+..... +..+|-+
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccc
Confidence 378999999999987665422111 1111 44556899999999999999999998765544443221 1223333
Q ss_pred HHHHHHHH-HHH-------HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC-ccCCCcEEEEEEeCCC
Q 010888 296 EKLIKVLF-ELA-------RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLP 366 (498)
Q Consensus 296 ~~~l~~~f-~~a-------~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-~~~~~~viVIaaTn~p 366 (498)
+...+.-. .+. --...+|..|||+|++..... ..-|++..+..-.+- =.|+ +.-+.+..|++++|+.
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR--tAIHEVMEQQTISIa--KAGI~TtLNAR~sILaAANPa 492 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR--TAIHEVMEQQTISIA--KAGINTTLNARTSILAAANPA 492 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh--HHHHHHHHhhhhhhh--hhccccchhhhHHhhhhcCcc
Confidence 33222100 000 011247899999999964311 112222221110000 0122 2234456688888876
Q ss_pred C-------------CCCHHHHhcccceeEe-cCCCHHHHHHHHHHhcCCCC--CCC-----CCCHH------HHHHHhcC
Q 010888 367 W-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQT--GEE-----SLPYD------LLVERTEG 419 (498)
Q Consensus 367 ~-------------~Ld~al~~Rf~~~i~~-~~Pd~~eR~~IL~~~l~~~~--~~~-----~~~l~------~La~~t~g 419 (498)
+ .|+++|++||+..+.+ ..|+.+.-..+.++..--+. -.+ ..+.+ .++++...
T Consensus 493 yGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P 572 (721)
T KOG0482|consen 493 YGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNP 572 (721)
T ss_pred ccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCC
Confidence 4 2899999999876544 55877666666666542111 111 12222 25566666
Q ss_pred CcHHHHHHHHHHHHhHH
Q 010888 420 YSGSDIRLVSKEAAMQP 436 (498)
Q Consensus 420 ~s~~dL~~L~~~A~~~a 436 (498)
..+.++..-+..|-...
T Consensus 573 ~vp~~l~dyi~~AYv~~ 589 (721)
T KOG0482|consen 573 VVPEALADYITGAYVEL 589 (721)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 67777766555554443
No 256
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=1.5e-05 Score=78.50 Aligned_cols=121 Identities=11% Similarity=0.019 Sum_probs=79.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec--------------cccch---hcccCcHHHHHHHHHHHH----
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------------SSVVS---KWRGDSEKLIKVLFELAR---- 307 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~--------------s~l~~---~~~G~~~~~l~~~f~~a~---- 307 (498)
.+++.+||+||+|+||..+|.++|+.+-+.--.-.| .++.- ....-....++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 567889999999999999999999977221000001 01100 000112233444443332
Q ss_pred -hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCC
Q 010888 308 -HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 308 -~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~P 386 (498)
....-|++|+++|.|. ....+.|+..++ .+..++++|..|+.++.+-+.++||+.. +.++.+
T Consensus 85 e~~~~KV~II~~ae~m~-------------~~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN-------------KQSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC-------------HHHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 1235799999999884 346678888887 3455678888999999999999999944 666555
No 257
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.17 E-value=1.6e-05 Score=79.85 Aligned_cols=163 Identities=21% Similarity=0.308 Sum_probs=102.3
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHH---HhCCeEEEEeccccc-----
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT---ECKTTFFNISASSVV----- 288 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~---~l~~~~i~v~~s~l~----- 288 (498)
...+.|..+..+.+.+++..-. ......+|++.||.|+|||++.-.... +.|-.++.+......
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~--------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTI--------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHH--------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 3457787777777777664422 123457899999999999998766644 456677665442211
Q ss_pred ----------------hhcccCcHHHHHHHHHHHHhc----CCeEEE-EcCccchhhhccccchhhHHHHHHHHHHHHHh
Q 010888 289 ----------------SKWRGDSEKLIKVLFELARHH----APSTIF-LDEIDAIISQRGEARSEHEASRRLKTELLIQM 347 (498)
Q Consensus 289 ----------------~~~~G~~~~~l~~~f~~a~~~----~p~VL~-IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~l 347 (498)
.+..|.....+..+....+.. +..|+| +||+|..++.. + +..+++.+
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------r--QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------R--QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------h--hHHHHHHH
Confidence 122244444444444433321 122555 57999887542 2 23355555
Q ss_pred hCCccCCCcEEEEEEeCCCCC---CCHHHHhcccce-eEecCC-CHHHHHHHHHHhc
Q 010888 348 DGLTQSDELVFVLAATNLPWE---LDAAMLRRLEKR-ILVPLP-DTEARRAMFESLL 399 (498)
Q Consensus 348 d~~~~~~~~viVIaaTn~p~~---Ld~al~~Rf~~~-i~~~~P-d~~eR~~IL~~~l 399 (498)
|-......++.||+.|.+.+. |..++.+||... |+++++ +.++-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 544455667889988877644 678999999766 555554 6788888888887
No 258
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.15 E-value=3.4e-05 Score=77.13 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=82.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH--hCCe---EEEEeccccc----------hh---c-----ccCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATE--CKTT---FFNISASSVV----------SK---W-----RGDSEKLIKVLFEL 305 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~--l~~~---~i~v~~s~l~----------~~---~-----~G~~~~~l~~~f~~ 305 (498)
...+.|.|+|++|+|||+||+.+++. .... .+.++.+.-. .. . ...........+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 44567899999999999999999987 4322 2333332111 00 0 11112223333333
Q ss_pred HHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecC
Q 010888 306 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~ 385 (498)
.-...+++|+||+++... ....+...+.. ...+..||.||...... ...... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~---------------~~~~l~~~~~~---~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE---------------DLEELREPLPS---FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH---------------HH-------HC---HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc---------------ccccccccccc---ccccccccccccccccc-cccccc-cccccccc
Confidence 334458999999997642 11112222211 11123455577653221 111111 35688888
Q ss_pred CCHHHHHHHHHHhcCCCC----CCCCCCHHHHHHHhcCCcHHHHHHH
Q 010888 386 PDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRLV 428 (498)
Q Consensus 386 Pd~~eR~~IL~~~l~~~~----~~~~~~l~~La~~t~g~s~~dL~~L 428 (498)
.+.++-.+++........ ...+.....+++.+.|. |-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 899999999999876544 11222356678777764 4444443
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.12 E-value=2e-05 Score=70.99 Aligned_cols=72 Identities=25% Similarity=0.418 Sum_probs=48.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----------------------cc--CcHHHHHHHHHHH
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------------RG--DSEKLIKVLFELA 306 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~----------------------~G--~~~~~l~~~f~~a 306 (498)
++|+||||+|||+++..++... +.+.+.++........ .. ............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 5677777654332110 00 1111122234455
Q ss_pred HhcCCeEEEEcCccchhhh
Q 010888 307 RHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~~ 325 (498)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6677899999999988654
No 260
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=0.0001 Score=87.97 Aligned_cols=176 Identities=18% Similarity=0.246 Sum_probs=97.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE---EEEecccc-
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---FNISASSV- 287 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~---i~v~~s~l- 287 (498)
.+...+++++|.+..++++.+.+... ....+-+-|+|++|+||||+|+++++.+...| +.++...+
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 35566899999999999998876321 22346788999999999999999998874332 11211000
Q ss_pred --chhcc-------cCc----HHHHH-------------HHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 288 --VSKWR-------GDS----EKLIK-------------VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 288 --~~~~~-------G~~----~~~l~-------------~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
...+. ... ...+. ...+..-..++.+|+|||++.. ...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~---------------~~l~ 312 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ---------------DVLD 312 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH---------------HHHH
Confidence 00000 000 00001 1111222345679999998643 1223
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCH----HHHHH
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY----DLLVE 415 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l----~~La~ 415 (498)
.+....+.. ..+ -.||.||.+ ..+.+ ..+..+.++.|+.++..+++..++-..... ..++ .++++
T Consensus 313 ~L~~~~~~~-~~G--srIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~ 383 (1153)
T PLN03210 313 ALAGQTQWF-GSG--SRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVAL 383 (1153)
T ss_pred HHHhhCccC-CCC--cEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 333222211 122 234556664 23332 356778899999999999998876443222 1222 23555
Q ss_pred HhcCCc
Q 010888 416 RTEGYS 421 (498)
Q Consensus 416 ~t~g~s 421 (498)
++.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 566643
No 261
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.11 E-value=3.8e-05 Score=69.78 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...++++|+||+||||++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999887
No 262
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.10 E-value=6.4e-07 Score=92.12 Aligned_cols=168 Identities=25% Similarity=0.270 Sum_probs=84.0
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc-----cchhcc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS-----VVSKWR 292 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~-----l~~~~~ 292 (498)
.+|.|.+.+|..+.-.+..............+..-++||.|.||||||.|.+.+++-..... ++++.. +.....
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 36889888888776433222111100001133456899999999999999998876554433 333221 111100
Q ss_pred ---cCcHHHHH-HHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC----cc------CCCcEE
Q 010888 293 ---GDSEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQ------SDELVF 358 (498)
Q Consensus 293 ---G~~~~~l~-~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----~~------~~~~vi 358 (498)
...+..+. +.+-.| ..+|++|||+|.+-.+ ....|++.|+.- .. -+.+.-
T Consensus 103 ~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp CCGGTSSECEEE-HHHHC---TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred cccccceeEEeCCchhcc---cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 00000111 122222 3489999999998432 345566666531 11 123466
Q ss_pred EEEEeCCCC-------------CCCHHHHhcccceeEe-cCCCHHHHHHHHHHhcCCC
Q 010888 359 VLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 359 VIaaTn~p~-------------~Ld~al~~Rf~~~i~~-~~Pd~~eR~~IL~~~l~~~ 402 (498)
|+|++|+.. .+++.+++||+..+.+ ..|+.+.-..+.++.+..+
T Consensus 167 vlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 889998764 3778999999987655 5567666666666665544
No 263
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.05 E-value=6.2e-05 Score=79.15 Aligned_cols=186 Identities=21% Similarity=0.219 Sum_probs=96.3
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 196 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 196 e~~~~~~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
|..+...+-..++...-.+.---+|.|.+++|+.+.-.+-.- ..+....+ ....-+|||.|.|||-||.|.+-+-+
T Consensus 309 EEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgG--srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEk 386 (729)
T KOG0481|consen 309 EEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGG--SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEK 386 (729)
T ss_pred HHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcC--ccccCCCcceeccceeEEEecCCchhHHHHHHHHHh
Confidence 334444443444433322223347899999999998765331 11112222 44556899999999999999999877
Q ss_pred HhCCeEEEEeccccchhcccCcHHHHH-----HHHH---HHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH
Q 010888 274 ECKTTFFNISASSVVSKWRGDSEKLIK-----VLFE---LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 345 (498)
Q Consensus 274 ~l~~~~i~v~~s~l~~~~~G~~~~~l~-----~~f~---~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~ 345 (498)
-.-.-+|.-....- -.|-++..++ ..+- ..-....+|++|||+|+|-.+.. ..-|++..+..-.+
T Consensus 387 vsPIaVYTSGKGSS---AAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR--VAIHEAMEQQTISI-- 459 (729)
T KOG0481|consen 387 VSPIAVYTSGKGSS---AAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR--VAIHEAMEQQTISI-- 459 (729)
T ss_pred cCceEEEecCCCcc---cccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhh--hHHHHHHHhhhHHH--
Confidence 55433332211000 0000000000 0000 00012347999999999954311 12222222111111
Q ss_pred HhhCC-ccCCCcEEEEEEeCCCC----C---------CCHHHHhcccceeEecCCCHHH
Q 010888 346 QMDGL-TQSDELVFVLAATNLPW----E---------LDAAMLRRLEKRILVPLPDTEA 390 (498)
Q Consensus 346 ~ld~~-~~~~~~viVIaaTn~p~----~---------Ld~al~~Rf~~~i~~~~Pd~~e 390 (498)
.=.|+ +.-+.+.-|+|++|.+. + +-+.+++||+.++-+..-..++
T Consensus 460 AKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~ 518 (729)
T KOG0481|consen 460 AKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEE 518 (729)
T ss_pred hhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcch
Confidence 11133 22334456788888762 1 4478999999887776654443
No 264
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.01 E-value=0.00019 Score=76.36 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=44.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
..+.+.+++.=...-+.++++++..... +. .....+-+||+||+||||||.++.+++++|..+++-+
T Consensus 76 y~P~t~eeLAVHkkKI~eVk~WL~~~~~----~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 76 YKPRTLEELAVHKKKISEVKQWLKQVAE----FT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cCcccHHHHhhhHHhHHHHHHHHHHHHH----hc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3455566666666666666666541110 01 1223356889999999999999999999998887554
No 265
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.99 E-value=2e-05 Score=81.86 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC-eEEEEeccccchhcccC------cHHHHHHHHHHHHhcCCeEEEEcCcc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSKWRGD------SEKLIKVLFELARHHAPSTIFLDEID 320 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~-~~i~v~~s~l~~~~~G~------~~~~l~~~f~~a~~~~p~VL~IDEiD 320 (498)
..+++|++||||+|+|||+|.-...+.+.. .-..++-.+++...... ....+..+.+.... ...+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 456799999999999999999999988743 22222222222211100 01112222222222 23599999996
Q ss_pred chhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 321 AIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 321 ~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
--- -....++..|+..+= ..++++|+|+|.+
T Consensus 138 V~D----------iaDAmil~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD----------IADAMILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred ccc----------hhHHHHHHHHHHHHH-----HCCCEEEecCCCC
Confidence 431 112345555555442 2347889999986
No 266
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.98 E-value=3.9e-05 Score=73.30 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=53.8
Q ss_pred ccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc-hhccc----------------------CcHHH
Q 010888 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-SKWRG----------------------DSEKL 298 (498)
Q Consensus 245 ~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~-~~~~G----------------------~~~~~ 298 (498)
.++.++..-++|+||||+|||+++..++.+. +.+.++++..++. ..... +....
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 3456777889999999999999999988754 6678888876521 10000 00111
Q ss_pred HHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 299 IKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 299 l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
+..+...+....+.+|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 33334444555789999999998864
No 267
>PHA00729 NTP-binding motif containing protein
Probab=97.98 E-value=2.8e-05 Score=75.23 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+++|+|+||||||++|.+++++++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999875
No 268
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.95 E-value=1.3e-05 Score=77.46 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=58.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc--cchh--------cccCcHHHHHHHHHHHH--hcCCeEEEEcC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS--VVSK--------WRGDSEKLIKVLFELAR--HHAPSTIFLDE 318 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~--l~~~--------~~G~~~~~l~~~f~~a~--~~~p~VL~IDE 318 (498)
+..+||||+||+|||++|+.++.. ..++..+.+. +.+. .....-..+...+.... ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 467999999999999999998631 2223332211 0000 01112222333333332 24568999999
Q ss_pred ccchhh------hccccc--hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 319 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 319 iD~l~~------~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
++.+.. .+..+. ........+...++..+..+...+.+|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 999865 221111 011122334555666665554555556555443
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.88 E-value=1.2e-05 Score=68.89 Aligned_cols=23 Identities=48% Similarity=0.908 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 010888 254 ILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~ 276 (498)
|.|+||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 270
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00077 Score=65.80 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=93.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeccccc-----hh----ccc--------CcHHHHHHHHHHHH-hcCC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVV-----SK----WRG--------DSEKLIKVLFELAR-HHAP 311 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l~-----~~----~~G--------~~~~~l~~~f~~a~-~~~p 311 (498)
-+.++|+.|+|||.+.|++..-++ ...++++...+. .. ... ..++.-+.+..... ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 577999999999999997766552 222344432221 11 111 11122223333333 3456
Q ss_pred eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH--------HHHhcccceeEe
Q 010888 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA--------AMLRRLEKRILV 383 (498)
Q Consensus 312 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~--------al~~Rf~~~i~~ 383 (498)
-++++||++.+... ..+.+.-..+.........-++..... .|.+ ++..|+...+++
T Consensus 133 v~l~vdEah~L~~~-------------~le~Lrll~nl~~~~~~~l~ivL~Gqp--~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLNDS-------------ALEALRLLTNLEEDSSKLLSIVLIGQP--KLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhChh-------------HHHHHHHHHhhcccccCceeeeecCCc--ccchhhchHHHHhhhheEEEEEec
Confidence 89999999988543 122222222211222222223323322 2222 222377666788
Q ss_pred cCCCHHHHHHHHHHhcCCCCCC----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 010888 384 PLPDTEARRAMFESLLPSQTGE----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 437 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~~~~~~----~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~ 437 (498)
++.+.++-...++++++..... .+..+..+...+.| .|..+.+++..|...+.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~ 254 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAY 254 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 8888888888888888665333 23346667777777 56778888877776654
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.82 E-value=0.00017 Score=67.30 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=46.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------cC-----------------------cH-----
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD-----------------------SE----- 296 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G~-----------------------~~----- 296 (498)
+|++||||||||+++..++.+. |.+.++++..+-..... |. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887755 66777776532221100 00 00
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 297 KLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 297 ~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123344444566789999999988754
No 272
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.79 E-value=0.00015 Score=84.64 Aligned_cols=135 Identities=24% Similarity=0.232 Sum_probs=90.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc------hhcc-----cCcHHHHHHHHHHHHhcCCeEEEEcCc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------SKWR-----GDSEKLIKVLFELARHHAPSTIFLDEI 319 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~------~~~~-----G~~~~~l~~~f~~a~~~~p~VL~IDEi 319 (498)
.+++||-|.||+|||.++.++|+..|..++++|.++-. +.+. |+....-...+...+. ..-+++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeehh
Confidence 46899999999999999999999999999999987432 2211 2222111223333333 356999999
Q ss_pred cchhhhccccchhhHHHHHHHHHHHHHhhCC-----------ccCCCcEEEEEEeCCCC------CCCHHHHhcccceeE
Q 010888 320 DAIISQRGEARSEHEASRRLKTELLIQMDGL-----------TQSDELVFVLAATNLPW------ELDAAMLRRLEKRIL 382 (498)
Q Consensus 320 D~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-----------~~~~~~viVIaaTn~p~------~Ld~al~~Rf~~~i~ 382 (498)
.... ..+++.|-..+|.. -.-..+..|.||-|+-+ .|+..+..|| ..++
T Consensus 1621 NLaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~ 1686 (4600)
T COG5271 1621 NLAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVK 1686 (4600)
T ss_pred hhhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEE
Confidence 5432 33444444444421 11234567777766543 4999999999 5688
Q ss_pred ecCCCHHHHHHHHHHhcCC
Q 010888 383 VPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 383 ~~~Pd~~eR~~IL~~~l~~ 401 (498)
+...+.++...|.......
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred ecccccchHHHHHHhhCCc
Confidence 9999989988888877644
No 273
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00016 Score=75.31 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=63.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----C-CeEEEEeccccc----------hhccc------CcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVV----------SKWRG------DSEKLIKVLFELA 306 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l----~-~~~i~v~~s~l~----------~~~~G------~~~~~l~~~f~~a 306 (498)
......++|.||+|+||||++..+|..+ | ..+..++...+. +...| .....+...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-- 211 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-- 211 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--
Confidence 4455789999999999999999999864 3 344445443321 00001 01111222222
Q ss_pred HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHH
Q 010888 307 RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 373 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al 373 (498)
+.....+|+||.......+ ......+..+.+.......++|+.+|+..+.+...+
T Consensus 212 ~l~~~DlVLIDTaG~~~~d------------~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRD------------RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred HhcCCCEEEEcCCCCCccc------------HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 2234589999999654221 123334444444433445578888888777766543
No 274
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.74 E-value=6.8e-05 Score=85.30 Aligned_cols=201 Identities=20% Similarity=0.169 Sum_probs=119.8
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccC-chhhccC--CCCCc-eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL--LSPWK-GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~-~~~~~~~--~~~~~-~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
+.+..++.|.......+..++...-.. ...+... ..... .+++.||||+|||+.++.+|.++|..+++.|+++..+
T Consensus 316 p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS 395 (871)
T KOG1968|consen 316 PTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS 395 (871)
T ss_pred cccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccccc
Confidence 344566777666666666665543111 1111111 11112 3699999999999999999999999999999987765
Q ss_pred hccc-----C--cHHHHHHHHH---H--HHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcE
Q 010888 290 KWRG-----D--SEKLIKVLFE---L--ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 357 (498)
Q Consensus 290 ~~~G-----~--~~~~l~~~f~---~--a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~v 357 (498)
+... . ....+...+. . .......||++||+|.+... .+.....+...+. ...+
T Consensus 396 k~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~----------dRg~v~~l~~l~~-----ks~~ 460 (871)
T KOG1968|consen 396 KKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE----------DRGGVSKLSSLCK-----KSSR 460 (871)
T ss_pred ccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch----------hhhhHHHHHHHHH-----hccC
Confidence 4331 1 1111222220 0 01112249999999998752 1223333443333 1123
Q ss_pred EEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 358 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 358 iVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
-+|+++|...........|-...++|+.|+.+....-+..++...... .+..++++.+.+ ++||++.+....
T Consensus 461 Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 461 PLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred CeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 467788887666555555655789999999988777666665444433 344566677655 568877555433
No 275
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.73 E-value=3.4e-05 Score=66.79 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
++|.||||+||||+|+.+++.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776654
No 276
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.71 E-value=0.00024 Score=68.80 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=33.2
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++.++..-++|+||||+|||+++..++.+. +.+.++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345666788999999999999999998755 6788888876
No 277
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.70 E-value=2.6e-05 Score=60.02 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 010888 461 PIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 493 (498)
Q Consensus 461 ~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g 493 (498)
+|+++||..||++++||++. ++.+|++|+++||
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 59999999999999999885 6999999999998
No 278
>PF14516 AAA_35: AAA-like domain
Probab=97.68 E-value=0.0042 Score=64.02 Aligned_cols=172 Identities=16% Similarity=0.099 Sum_probs=90.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC-------------------------------
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD------------------------------- 294 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~------------------------------- 294 (498)
.++..+.|.||..+|||++...+.+.+ |...+.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 446789999999999999999998766 7788888876542211000
Q ss_pred cHHHHHHHHHH---HHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--cCCCc-EEEEEEeCCCCC
Q 010888 295 SEKLIKVLFEL---ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDEL-VFVLAATNLPWE 368 (498)
Q Consensus 295 ~~~~l~~~f~~---a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~-viVIaaTn~p~~ 368 (498)
........|+. .....|-||+|||+|.+..... ........|-...+.-. ..... +++++.+..+.
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~- 180 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY- 180 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc-
Confidence 11111222322 1224678999999999975311 11222222222222111 11122 33333333222
Q ss_pred CCHHH-Hh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 010888 369 LDAAM-LR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 432 (498)
Q Consensus 369 Ld~al-~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A 432 (498)
+.... .+ .+...+.++.-+.++-..+++.+-.. .. ...++.+-..+.|.. .=+..+|...
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~-~~~~~~l~~~tgGhP-~Lv~~~~~~l 243 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS-QEQLEQLMDWTGGHP-YLVQKACYLL 243 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC-HHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 11111 12 23445666767888888887766322 11 222777777787743 3333344433
No 279
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.67 E-value=0.00041 Score=74.27 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=56.6
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------cC--------cHHHHHHHHHHHHh
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARH 308 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G~--------~~~~l~~~f~~a~~ 308 (498)
++..+..-++|+|+||+|||+++..++... +.+.++++..+...... |. .+..+..+++....
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 345667789999999999999999998866 67888888755432211 10 11123455566666
Q ss_pred cCCeEEEEcCccchhhh
Q 010888 309 HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 309 ~~p~VL~IDEiD~l~~~ 325 (498)
..|.+|+||++..+...
T Consensus 155 ~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSP 171 (446)
T ss_pred hCCCEEEEechhhhccc
Confidence 78899999999988653
No 280
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00059 Score=71.53 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=62.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEeccccc--h--------h------cccCcHHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVV--S--------K------WRGDSEKLIKVLFELAR 307 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s~l~--~--------~------~~G~~~~~l~~~f~~a~ 307 (498)
+..++|.||+|+||||++..+|..+ +..+..+++.... . . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4679999999999999999999865 2344444432211 0 0 1112223333333333
Q ss_pred hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHH
Q 010888 308 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 372 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~a 372 (498)
....+|+||.++....+ ...+..+...++........++|+.+|.....+...
T Consensus 253 -~~~DlVLIDTaGr~~~~-----------~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~ 305 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEI 305 (388)
T ss_pred -CCCCEEEEcCCCCCccC-----------HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHH
Confidence 34689999999876421 112334444444333333557788777776666643
No 281
>PHA02624 large T antigen; Provisional
Probab=97.65 E-value=0.00018 Score=78.15 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r 326 (498)
..+..+.++|+||||||||+++.+|++.++...+.||++.-. .+ |...-....-+.+|||+-.-....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k----------s~--FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK----------LN--FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch----------hH--HHhhhhhhceEEEeeecccccccc
Confidence 345557899999999999999999999997777778754321 11 222222222578888884332211
Q ss_pred cccchhhHHHHHHHHHHHHHhhCC-ccC------CC----cEEEEEEeCCCCCCCHHHHhcccceeEecC
Q 010888 327 GEARSEHEASRRLKTELLIQMDGL-TQS------DE----LVFVLAATNLPWELDAAMLRRLEKRILVPL 385 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~ld~~-~~~------~~----~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~ 385 (498)
.. ...+... .-...|-..+||. ... +. --..|.|||. +.++..+.-||...+.|..
T Consensus 495 ~~-Lp~G~~~-dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 495 KD-LPSGQGM-NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cc-CCccccc-chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 10 0000000 0123345556655 110 00 0123447775 4578888889988888765
No 282
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.65 E-value=0.00044 Score=67.52 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=48.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc-----------------------------ccC
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW-----------------------------RGD 294 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~-----------------------------~G~ 294 (498)
..++...+++.||||||||+++..++... +.+.++++..+-.... .+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 35666789999999999999986655533 5666666643211100 000
Q ss_pred --cHHHHHHHHHHHHhcCCeEEEEcCccchh
Q 010888 295 --SEKLIKVLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 295 --~~~~l~~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
....+..+........|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 12333444555555678999999998764
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.64 E-value=0.00046 Score=72.09 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=55.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------cC--------cHHHHHHHHHHHHhc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 309 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G~--------~~~~l~~~f~~a~~~ 309 (498)
+..+..-++|+|+||+|||+++..++... +.+.++++..+-..... |. .+..+..+.+.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45666789999999999999999998765 45788887654322110 10 112244556666677
Q ss_pred CCeEEEEcCccchhhh
Q 010888 310 APSTIFLDEIDAIISQ 325 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~~ 325 (498)
.|.+|+||++..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999988643
No 284
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00036 Score=79.16 Aligned_cols=163 Identities=23% Similarity=0.354 Sum_probs=108.7
Q ss_pred CCccccCc-HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEec
Q 010888 216 KWESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISA 284 (498)
Q Consensus 216 ~~~~IvG~-~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~~ 284 (498)
.++.++|. ++-.+.+.+.+.. ...++-+|.|.||+|||.++.-+++.. +..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL~R------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILSR------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHHhc------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36778786 5555566655532 222688999999999999999999977 345666666
Q ss_pred cccc--hhcccCcHHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 285 SSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 285 s~l~--~~~~G~~~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
..+. .++.|+.+..++.+.+.+. .....||||||++.+........ .-...+ ++..+- .+++ +.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-----~~d~~n-lLkp~L---~rg~-l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-----AIDAAN-LLKPLL---ARGG-LWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-----HHHHHH-hhHHHH---hcCC-eEEEe
Confidence 5443 4577889999999999888 45667999999999976643311 111222 222221 1222 66676
Q ss_pred EeC-CC----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCC
Q 010888 362 ATN-LP----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 362 aTn-~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~ 401 (498)
||. .. ..=+|++-+||+. +.++.|+.+.-..||+.....
T Consensus 322 atT~e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhh
Confidence 654 22 2358899999954 788999887766676665544
No 285
>PRK08118 topology modulation protein; Reviewed
Probab=97.60 E-value=0.00016 Score=67.02 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
..+++.||||+||||+|+.+++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999888774
No 286
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.57 E-value=0.00051 Score=66.07 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=32.2
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++..+..-++|+|+||+|||+++..+|.+. +.+.++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 345666779999999999999999998766 5677777653
No 287
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=0.0002 Score=66.53 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
.++|.|+||+||||+|+.++..++.+.+.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999999888776533
No 288
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.56 E-value=0.00013 Score=79.09 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=48.5
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEec
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA 284 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~ 284 (498)
..|+|+.|++++++++.+.+..... ++.....-++|.||||+|||+||+.|++.+ ..+++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3488999999999999987743221 122344678899999999999999999987 356666544
No 289
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.55 E-value=0.00021 Score=67.75 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=57.1
Q ss_pred EEEEcCCCCcHHHHHHHH-HHHh---CCeEEEEeccccchhcc----cC-cHH------------HHHHHHHHHHhcCCe
Q 010888 254 ILLFGPPGTGKTMLAKAV-ATEC---KTTFFNISASSVVSKWR----GD-SEK------------LIKVLFELARHHAPS 312 (498)
Q Consensus 254 vLL~GppGtGKT~lArai-a~~l---~~~~i~v~~s~l~~~~~----G~-~~~------------~l~~~f~~a~~~~p~ 312 (498)
.+++|.||+|||+.|-.. .... |.+++. |...+.-... +. ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987555 4332 666554 5442221110 00 000 000111111112468
Q ss_pred EEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCC
Q 010888 313 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 313 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~P 386 (498)
+|+|||+..+.+.+...... ....+..+.. .+....-|+.+|..+..+|+.+++..+..+.+.-+
T Consensus 82 liviDEa~~~~~~r~~~~~~-------~~~~~~~l~~--hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-------VPEIIEFLAQ--HRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T-----------HHHHGGGG--CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccccc-------chHHHHHHHH--hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 99999999998886652110 0112233332 23334667889999999999999877766666544
No 290
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.53 E-value=0.00053 Score=70.02 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=54.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHH
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 306 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a 306 (498)
++.++.+-++|+||||||||+|+..++.+. +.+.+++++.+.... .....+..+..+....
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 356777789999999999999988876654 667777766432210 1112333343344445
Q ss_pred HhcCCeEEEEcCccchhhh
Q 010888 307 RHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~~ 325 (498)
+...+.+|+||-+..+.+.
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 5667899999999998764
No 291
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.53 E-value=9.9e-05 Score=67.85 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++..++|+|+||||||++|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 457899999999999999999999999888854
No 292
>PRK04296 thymidine kinase; Provisional
Probab=97.52 E-value=0.0011 Score=62.64 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
.-.+++||+|+|||+++..++.++ +..++.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 357899999999999999888876 556565543
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.51 E-value=0.00045 Score=80.93 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=90.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc------chhcccCcHH---HHHHHHHHHHhcCCeEEEEcCccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV------VSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l------~~~~~G~~~~---~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
.-.+||.||+.+|||.++..+|++.|..|+++|-.+- .+.|+..... ...+++-.|..+. --|++||+..
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeecccc
Confidence 3569999999999999999999999999999986432 3333322111 1122333333222 4589999965
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhhC-----------CccCCCcEEEEEEeCCCC------CCCHHHHhcccceeEec
Q 010888 322 IISQRGEARSEHEASRRLKTELLIQMDG-----------LTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVP 384 (498)
Q Consensus 322 l~~~r~~~~~~~~~~~~i~~~Ll~~ld~-----------~~~~~~~viVIaaTn~p~------~Ld~al~~Rf~~~i~~~ 384 (498)
.+.+ +++.|-..+|. +..+....++.||-|+|. .|+.|++.|| ..++|.
T Consensus 967 ApTD-------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFd 1032 (4600)
T COG5271 967 APTD-------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFD 1032 (4600)
T ss_pred CcHH-------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-Hhhhcc
Confidence 5422 33334444432 222344577777778774 3899999999 558888
Q ss_pred CCCHHHHHHHHHHhcCC
Q 010888 385 LPDTEARRAMFESLLPS 401 (498)
Q Consensus 385 ~Pd~~eR~~IL~~~l~~ 401 (498)
.-..++...||...++-
T Consensus 1033 dipedEle~ILh~rc~i 1049 (4600)
T COG5271 1033 DIPEDELEEILHGRCEI 1049 (4600)
T ss_pred cCcHHHHHHHHhccCcc
Confidence 87888999999887744
No 294
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.51 E-value=0.00022 Score=67.93 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=62.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
-++|+||+|||||.+|-++|++.|.|++..+.-.......-.+.+....-+... .=++|||-..--+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~-----~RiyL~~r~l~~G~------- 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGT-----RRIYLDDRPLSDGI------- 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT------EEEES----GGG-S-------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHccc-----ceeeeccccccCCC-------
Confidence 478999999999999999999999999999876554433211222111111111 12888865322111
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhc-----cc-ceeEecCCCHHHHHHHHHHhcCCC
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRR-----LE-KRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~R-----f~-~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
-......+.|+..++.+.. .+.+ |+ -.-....+.....++ |. ....+++|+.+.-..-.+.+.+++
T Consensus 71 -i~a~ea~~~Li~~v~~~~~-~~~~-Il-EGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 71 -INAEEAHERLISEVNSYSA-HGGL-IL-EGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp ---HHHHHHHHHHHHHTTTT-SSEE-EE-EE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHhccc-cCce-EE-eCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence 1123345567777777765 3333 33 222222333333333 22 334668888877665555554443
No 295
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0031 Score=66.62 Aligned_cols=120 Identities=20% Similarity=0.171 Sum_probs=69.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
-++|+||.+||||++++.+........++++..+........ ....+ .+..+.......||||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~-~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLR-AYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHH-HHHHhhccCCceEEEecccCchh--------
Confidence 799999999999999999988886656667665554332211 11112 22222222447999999987632
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC---CCCCHHHHhcccceeEecCCCHHHHHH
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRA 393 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p---~~Ld~al~~Rf~~~i~~~~Pd~~eR~~ 393 (498)
+...+-...|... . .++ |++++.. ..+.+.+..|. ..+.+.+.+..+...
T Consensus 109 ------W~~~lk~l~d~~~--~-~v~-itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ------WERALKYLYDRGN--L-DVL-ITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ------HHHHHHHHHcccc--c-eEE-EECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 2222222333111 1 343 3333332 22344455575 667778888888754
No 296
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.49 E-value=0.001 Score=64.86 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=51.6
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------------------------------
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------------------------------ 292 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------------------------------ 292 (498)
++.+++..++++|+||+|||+++..++.+. +.+.++++..+-...+.
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 346777889999999999999999997653 67777776533211100
Q ss_pred ---cCcHHHHHHHHHHHHhcCCeEEEEcCccchh
Q 010888 293 ---GDSEKLIKVLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 293 ---G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
......+..+........|.+++||++..+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0012233344444555678999999998663
No 297
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.49 E-value=0.00076 Score=68.93 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=54.0
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHH
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 306 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a 306 (498)
+++++.+-+.|+||||||||+++..++.+. +...++++..+-... .....+..+..+-..+
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 346677789999999999999999987654 677778876432110 0112233333333344
Q ss_pred HhcCCeEEEEcCccchhhh
Q 010888 307 RHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~~ 325 (498)
+...+.+|+||-+-.+.+.
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 5667899999999998763
No 298
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.48 E-value=0.00056 Score=68.09 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=60.9
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEE--ecccc----
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI--SASSV---- 287 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v--~~s~l---- 287 (498)
.+.|+.-+++.+...+...+..+. -..|-.+=|||+|||||..+++.||+.+ ..+++.. ...++
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 477888888888887766554332 1223345579999999999999999977 2233211 11111
Q ss_pred -chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 288 -VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 288 -~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
...|.. +....+...+.....++.++||+|.|.+.
T Consensus 158 ~ie~Yk~---eL~~~v~~~v~~C~rslFIFDE~DKmp~g 193 (344)
T KOG2170|consen 158 KIEDYKE---ELKNRVRGTVQACQRSLFIFDEVDKLPPG 193 (344)
T ss_pred HHHHHHH---HHHHHHHHHHHhcCCceEEechhhhcCHh
Confidence 112221 22233444455566689999999999654
No 299
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.47 E-value=0.00015 Score=67.30 Aligned_cols=23 Identities=52% Similarity=0.804 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 300
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.47 E-value=0.0013 Score=67.03 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=56.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE-EEEeccccch-------hcccCcHHHHHHHHHHHHhcCCeEEEEcCc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSVVS-------KWRGDSEKLIKVLFELARHHAPSTIFLDEI 319 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~-i~v~~s~l~~-------~~~G~~~~~l~~~f~~a~~~~p~VL~IDEi 319 (498)
..+++|+.+||+-|.|||+|.-.....+..+- ..++--.++. ...|.+ .-+..+-.... ....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 45779999999999999999999988774322 2222222211 111222 11111111111 22359999998
Q ss_pred cchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 320 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 320 D~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.--- -.+ ..++..|+..+= ..+|.+++|+|.+
T Consensus 140 ~VtD------I~D----AMiL~rL~~~Lf-----~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EVTD------IAD----AMILGRLLEALF-----ARGVVLVATSNTA 171 (367)
T ss_pred eecC------hHH----HHHHHHHHHHHH-----HCCcEEEEeCCCC
Confidence 5321 111 334445554442 2247889999875
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.45 E-value=0.0018 Score=63.36 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.8
Q ss_pred ccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 245 ~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.++.+++..+|++||||||||+++..++.+. |.+.++++..
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 3457788899999999999999998776542 6677777653
No 302
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.44 E-value=0.0021 Score=66.05 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=89.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch---------
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--------- 289 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~--------- 289 (498)
.+.+.+...+.+...+-.. .-.-|..+.|+|-+|||||.+++.+.+.++.+.+.+++-+...
T Consensus 7 ~v~~Re~qi~~L~~Llg~~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCCC---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 4556777778887765221 1134567899999999999999999999999999998854321
Q ss_pred ------hcccCcH----HHHHH---HHHH---HHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc
Q 010888 290 ------KWRGDSE----KLIKV---LFEL---ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 352 (498)
Q Consensus 290 ------~~~G~~~----~~l~~---~f~~---a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~ 352 (498)
...|... ..+.. .+.. +... ..-.|++|.+|.+... ...+...++..-+ +.+
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~----------~a~ll~~l~~L~e-l~~ 146 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM----------DAILLQCLFRLYE-LLN 146 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc----------chHHHHHHHHHHH-HhC
Confidence 1112111 11211 2222 2222 3468899999998411 1334444443322 222
Q ss_pred CCCcEEEEEEeCCCCCCCHHHHh----cccceeEecCCCHHHHHHHHHHhc
Q 010888 353 SDELVFVLAATNLPWELDAAMLR----RLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 353 ~~~~viVIaaTn~p~~Ld~al~~----Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
.+. +.++.+.-.+ ...... -....++||.|+.++-..|+..--
T Consensus 147 ~~~-i~iils~~~~---e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 147 EPT-IVIILSAPSC---EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CCc-eEEEEecccc---HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 222 2222222211 111111 123567899999999998887644
No 303
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.44 E-value=0.00025 Score=62.27 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=40.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.|.|+.-+++.+...+...+..++ -..|.-+-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-----p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-----PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-----CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 688999999999988877654331 1222345589999999999999999986
No 304
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.43 E-value=0.0011 Score=63.87 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=31.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---C------CeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~------~~~i~v~~s~ 286 (498)
++.++..-+.|+||||+|||+++..++... + ...++++..+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 346666789999999999999999998764 3 5667777643
No 305
>PHA02774 E1; Provisional
Probab=97.43 E-value=0.00064 Score=73.72 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeE-EEEec
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISA 284 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~-i~v~~ 284 (498)
+..++++|+||||||||+++-+|++.++... ..+|.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3346899999999999999999999986444 33654
No 306
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.40 E-value=0.00016 Score=66.94 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=38.2
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEecccc
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV 287 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~---~i~v~~s~l 287 (498)
++|.++..+++...+. .. ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6888999999988764 11 12345789999999999999999998877433 666666554
No 307
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.40 E-value=0.00037 Score=61.95 Aligned_cols=33 Identities=42% Similarity=0.658 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
+++.||||+||||+|+.+++.++ ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 68999999999999999999999 4445544443
No 308
>PRK14974 cell division protein FtsY; Provisional
Probab=97.39 E-value=0.002 Score=66.28 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
.+.-++|.||||+||||++..+|..+ +..+..+++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 35678999999999999999998866 455555554
No 309
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.00055 Score=65.81 Aligned_cols=74 Identities=26% Similarity=0.368 Sum_probs=49.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh--C------CeEEEEec-cccchhcccCc-------------HHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC--K------TTFFNISA-SSVVSKWRGDS-------------EKLIKVLFELA 306 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l--~------~~~i~v~~-s~l~~~~~G~~-------------~~~l~~~f~~a 306 (498)
..+.+.|+.|||||||||+.|-+|+-+ + ..+.-++- +++.+...|.. .-.-..++...
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 345689999999999999999999976 2 23333433 34433322221 11233466677
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
+.+.|.|+++|||...
T Consensus 215 rsm~PEViIvDEIGt~ 230 (308)
T COG3854 215 RSMSPEVIIVDEIGTE 230 (308)
T ss_pred HhcCCcEEEEeccccH
Confidence 8899999999999654
No 310
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.37 E-value=0.0062 Score=64.90 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.++..++++|++|+||||++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 356789999999999999999999877 5566656553
No 311
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.37 E-value=0.0012 Score=64.19 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=31.7
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++.++..-+.|+||||||||+++..++... +...++++..+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 346667788999999999999999998543 25677777644
No 312
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.34 E-value=0.0021 Score=62.26 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=51.4
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh--------------------------c----
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------------------W---- 291 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~--------------------------~---- 291 (498)
++.+++..+|+.||||||||+++..++.+. |.+.++++..+-... .
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 456777889999999999999999876533 778887765322100 0
Q ss_pred ---ccCcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 292 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 292 ---~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
..........+.+......+.+++||.+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123344455555666677799999999988
No 313
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.34 E-value=0.0025 Score=60.80 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.+-++|.||+|+||||+.+.|+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 367899999999999999999853
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.31 E-value=0.00075 Score=67.44 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC----------eEEEEe-ccccchhcc-------cC------cHHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT----------TFFNIS-ASSVVSKWR-------GD------SEKLIKVLFELAR 307 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~----------~~i~v~-~s~l~~~~~-------G~------~~~~l~~~f~~a~ 307 (498)
.+++|.||+|+||||+.+.++..+.. ++..++ ..++...+. |. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999998732 222221 122221111 10 1112334666677
Q ss_pred hcCCeEEEEcCc
Q 010888 308 HHAPSTIFLDEI 319 (498)
Q Consensus 308 ~~~p~VL~IDEi 319 (498)
...|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 788999999996
No 315
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0025 Score=62.88 Aligned_cols=46 Identities=26% Similarity=0.227 Sum_probs=32.0
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+..|.+.......+...+.. ..-+++.||+|||||++|.+++.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344555555555555554421 247899999999999999999985
No 316
>PRK13947 shikimate kinase; Provisional
Probab=97.29 E-value=0.00025 Score=65.36 Aligned_cols=32 Identities=44% Similarity=0.564 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.+++|.|+||||||++++.+|+.++.+++..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999997654
No 317
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.28 E-value=0.0028 Score=60.24 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
+..++.||||||||++++.+...+ +..++.+.++
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 568889999999999999998766 5666666553
No 318
>PRK03839 putative kinase; Provisional
Probab=97.24 E-value=0.00028 Score=65.86 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999887654
No 319
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.00077 Score=64.20 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=41.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC----eEEEEec-cccch---------hcccCcHHHHHHHHHHHHhcCCeEEEEcC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKT----TFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 318 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~----~~i~v~~-s~l~~---------~~~G~~~~~l~~~f~~a~~~~p~VL~IDE 318 (498)
-++|.||+|+||||++++++..+.. .++.+.. .++.. ...|.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887732 2222211 11110 01121122234455566667899999999
Q ss_pred c
Q 010888 319 I 319 (498)
Q Consensus 319 i 319 (498)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 320
>PRK06762 hypothetical protein; Provisional
Probab=97.23 E-value=0.0011 Score=60.87 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.-++|.|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 5688999999999999999999997667667665544
No 321
>PRK13695 putative NTPase; Provisional
Probab=97.21 E-value=0.003 Score=58.56 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
.++|.|++|+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 322
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.21 E-value=0.0017 Score=56.03 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998888776
No 323
>PRK09354 recA recombinase A; Provisional
Probab=97.21 E-value=0.0029 Score=65.32 Aligned_cols=79 Identities=25% Similarity=0.320 Sum_probs=53.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHH
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 306 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a 306 (498)
++.+..+-++|+||||||||+|+..++.+. |...++++..+-... -....+..+..+-...
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 356677789999999999999999887644 677777776442110 0112233333333344
Q ss_pred HhcCCeEEEEcCccchhh
Q 010888 307 RHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~ 324 (498)
+...+.+|+||-+-.+.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 556789999999998876
No 324
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00029 Score=63.26 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++|++|-||||||+++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 58999999999999999999999999888764
No 325
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0055 Score=59.73 Aligned_cols=133 Identities=10% Similarity=0.070 Sum_probs=90.3
Q ss_pred CceEEEEcCCC-CcHHHHHHHHHHHhCC---------eEEEEeccccchhc-ccCcHHHHHHHHHHHH----hcCCeEEE
Q 010888 251 WKGILLFGPPG-TGKTMLAKAVATECKT---------TFFNISASSVVSKW-RGDSEKLIKVLFELAR----HHAPSTIF 315 (498)
Q Consensus 251 ~~~vLL~GppG-tGKT~lAraia~~l~~---------~~i~v~~s~l~~~~-~G~~~~~l~~~f~~a~----~~~p~VL~ 315 (498)
.+..||.|..+ +||..++..+++.+-. .++.+....-..+. ..-.-..++.+.+.+. ....-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 36799999998 9999999988887622 23333321100000 0112334555544443 23457999
Q ss_pred EcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHH
Q 010888 316 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 316 IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL 395 (498)
|+++|.|. ....+.||+.++. +...+++|..|..+..+.+.++||+ ..+.++.|+...-.++.
T Consensus 95 I~~ae~mt-------------~~AANALLKtLEE---PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 95 IYSAELMN-------------LNAANSCLKILED---APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELY 157 (263)
T ss_pred EechHHhC-------------HHHHHHHHHhhcC---CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHH
Confidence 99999984 3466788888873 4455777778888899999999999 56899999887777777
Q ss_pred HHhcC
Q 010888 396 ESLLP 400 (498)
Q Consensus 396 ~~~l~ 400 (498)
...+.
T Consensus 158 ~~~~~ 162 (263)
T PRK06581 158 SQFIQ 162 (263)
T ss_pred HHhcc
Confidence 76653
No 326
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.18 E-value=0.00037 Score=62.83 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+++|+|+||+|||++++.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887554
No 327
>PRK00625 shikimate kinase; Provisional
Probab=97.18 E-value=0.00038 Score=64.91 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+++|.|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 328
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.17 E-value=0.002 Score=59.28 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.++-.++|+||+|||||++.|.+|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4666789999999999999999999855
No 329
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.16 E-value=0.0016 Score=62.05 Aligned_cols=72 Identities=24% Similarity=0.280 Sum_probs=42.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----------h------c---cc-CcHHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---RG-DSEKLIKVLFELAR 307 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------~------~---~G-~~~~~l~~~f~~a~ 307 (498)
|+-++|.||+|+||||.+-.+|.++ +..+.-+++..... . + .. .........++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4678999999999999999998877 44444444322210 0 0 01 12233445555555
Q ss_pred hcCCeEEEEcCccch
Q 010888 308 HHAPSTIFLDEIDAI 322 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l 322 (498)
.....+|+||=....
T Consensus 81 ~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS 95 (196)
T ss_dssp HTTSSEEEEEE-SSS
T ss_pred hcCCCEEEEecCCcc
Confidence 555678999976543
No 330
>PRK04328 hypothetical protein; Provisional
Probab=97.15 E-value=0.0064 Score=60.04 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=29.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
++.+++..+|++||||||||+++..++.+. |.+.++++.
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 346677889999999999999998876542 566666654
No 331
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.15 E-value=0.003 Score=58.71 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-c----------------ccCcHHHHHHHHHHHHhcCCeEEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-W----------------RGDSEKLIKVLFELARHHAPSTIFL 316 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-~----------------~G~~~~~l~~~f~~a~~~~p~VL~I 316 (498)
+|+.|++|+|||++|..++...+.+.+++..+.-.+. + ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887777777765432211 0 011222233333221 14679999
Q ss_pred cCccchhhhcc
Q 010888 317 DEIDAIISQRG 327 (498)
Q Consensus 317 DEiD~l~~~r~ 327 (498)
|-+..+....-
T Consensus 80 Dclt~~~~n~l 90 (169)
T cd00544 80 DCLTLWVTNLL 90 (169)
T ss_pred EcHhHHHHHhC
Confidence 99988876543
No 332
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.14 E-value=0.0015 Score=65.14 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=57.3
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe-ccccchh
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVSK 290 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~-~s~l~~~ 290 (498)
.+++++.-..+..+.+++.+.. +...++|.||+|+||||+++++...+. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 3456665555566666555422 234689999999999999999987763 3344442 1122110
Q ss_pred ------cccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 291 ------WRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 291 ------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
...............+....|++|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0111112245556667778899999999943
No 333
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.13 E-value=0.0026 Score=59.11 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
.+|+.|+||+|||++|..++.+++.+.+++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777776543
No 334
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.12 E-value=0.0056 Score=59.01 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 335
>PRK14532 adenylate kinase; Provisional
Probab=97.11 E-value=0.00049 Score=64.61 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
++++.||||+||||+++.+|+.+|.+.+ +..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 5899999999999999999999987654 4445543
No 336
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.11 E-value=0.0035 Score=67.34 Aligned_cols=78 Identities=24% Similarity=0.331 Sum_probs=54.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------cC--------cHHHHHHHHHHHHhc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 309 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G~--------~~~~l~~~f~~a~~~ 309 (498)
+..+..-++|.|+||+|||+++..++... +.+.++++..+...... |. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 46667789999999999999999998765 45777887654332110 11 011234455566667
Q ss_pred CCeEEEEcCccchhh
Q 010888 310 APSTIFLDEIDAIIS 324 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~ 324 (498)
.|.+|+||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998754
No 337
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.10 E-value=0.001 Score=66.23 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=58.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEec-cccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVV 288 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~-s~l~ 288 (498)
...+++++.-.....+.+.+.+.... ....++++.||+|+|||++++++...+. ..++.+-- .++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 34566777665555566666554321 2347899999999999999999999872 34444421 1221
Q ss_pred hh------cc-cCcHHHHHHHHHHHHhcCCeEEEEcCcc
Q 010888 289 SK------WR-GDSEKLIKVLFELARHHAPSTIFLDEID 320 (498)
Q Consensus 289 ~~------~~-G~~~~~l~~~f~~a~~~~p~VL~IDEiD 320 (498)
-. .. .........++..+....|++|+++|+-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 10 00 0122234556777777889999999994
No 338
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.10 E-value=0.00049 Score=64.15 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
+++.||||+||||+++.+|+.++. ..++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHH
Confidence 689999999999999999999986 4555555543
No 339
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0071 Score=63.23 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc----h---hc--
Q 010888 224 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----S---KW-- 291 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~----~---~~-- 291 (498)
..+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+ +..+..+++.... . .+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae 293 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK 293 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhh
Confidence 455666665554433222111 2234679999999999999999999877 4445445442221 0 00
Q ss_pred -------ccCcHHHHHHHHHHHHh-cCCeEEEEcCccch
Q 010888 292 -------RGDSEKLIKVLFELARH-HAPSTIFLDEIDAI 322 (498)
Q Consensus 292 -------~G~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l 322 (498)
.......+...+..+.. ....+|+||-....
T Consensus 294 ~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 294 TIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 11233334444444432 23578888877554
No 340
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.0061 Score=64.87 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 286 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~ 286 (498)
...++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4678999999999999999887754 34566666544
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.06 E-value=0.0092 Score=59.78 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.+++.+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445778889999999999999998877 5556555543
No 342
>PRK13949 shikimate kinase; Provisional
Probab=97.06 E-value=0.00054 Score=63.61 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+.++|.|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46999999999999999999999999888765
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0029 Score=59.94 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
-++++|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999983
No 344
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.05 E-value=0.019 Score=66.78 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=78.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-----------c----cc---------------CcHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-----------W----RG---------------DSEKLIKV 301 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-----------~----~G---------------~~~~~l~~ 301 (498)
+-++++||+|.|||+++..++...+ ++..++...-... . .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 5689999999999999999988776 6655544211000 0 00 00112223
Q ss_pred HHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH-HHHhcccc
Q 010888 302 LFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEK 379 (498)
Q Consensus 302 ~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~-al~~Rf~~ 379 (498)
++..... ..|.+|+|||++.+... .....+..++..+ .....+|| ++.....+.- .+.- -+.
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~---------~~~~~l~~l~~~~-----~~~~~lv~-~sR~~~~~~~~~l~~-~~~ 175 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNP---------EIHEAMRFFLRHQ-----PENLTLVV-LSRNLPPLGIANLRV-RDQ 175 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCCh---------HHHHHHHHHHHhC-----CCCeEEEE-EeCCCCCCchHhHHh-cCc
Confidence 3333332 56899999999987311 1122333333222 22223344 5544222321 2111 112
Q ss_pred eeEec----CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 010888 380 RILVP----LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 421 (498)
Q Consensus 380 ~i~~~----~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s 421 (498)
.+.+. ..+.++-.+++...+... .....+..+.+.|.|..
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWA 219 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChH
Confidence 23344 458888888887665432 12234556667777654
No 345
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.04 E-value=0.0066 Score=60.34 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=31.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++.++...++++||||||||+++..++.+. |.+.++++..
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 346777889999999999999999886643 5566666643
No 346
>PRK06217 hypothetical protein; Validated
Probab=97.04 E-value=0.00064 Score=63.74 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999999877654
No 347
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.04 E-value=0.00055 Score=63.68 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
+-++|.|+||+||||+|+.++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 56899999999999999999999988877665443
No 348
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.02 E-value=0.0038 Score=64.47 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+|++++|||.-|||||+|.-.....+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999998887654
No 349
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.01 E-value=0.0082 Score=57.15 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~ 273 (498)
+...++|+||.|+|||++.+.|+.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 345799999999999999999993
No 350
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.99 E-value=0.00068 Score=60.41 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+.|.|+||||||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999988775
No 351
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.99 E-value=0.054 Score=57.01 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC
Q 010888 367 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 367 ~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
..|..++-+|.-+.+.+...+.+.-+..+...+...
T Consensus 197 k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 197 KPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 347777777655888999999888888888777554
No 352
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.99 E-value=0.00073 Score=60.91 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
++|.|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
No 353
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.99 E-value=0.0055 Score=61.67 Aligned_cols=63 Identities=27% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----C-CeEEEEeccc
Q 010888 224 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS 286 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~-~~~i~v~~s~ 286 (498)
+.+.+.+.+.+...+............+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3445555555544332111111123345678999999999999999998866 3 5666666543
No 354
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.98 E-value=0.0023 Score=66.76 Aligned_cols=77 Identities=25% Similarity=0.389 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC-----eEEEEeccc----------------cchhcccCcHHHHH---HHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNISASS----------------VVSKWRGDSEKLIK---VLFEL 305 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~-----~~i~v~~s~----------------l~~~~~G~~~~~l~---~~f~~ 305 (498)
.+...+|.||||+|||+|++.|++.... ..+.+...+ +.+.+.......++ .+++.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999997732 222222211 11222222233222 23333
Q ss_pred HH----hcCCeEEEEcCccchhhhc
Q 010888 306 AR----HHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 306 a~----~~~p~VL~IDEiD~l~~~r 326 (498)
|+ .....+|||||+..+....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHHHH
Confidence 32 2356799999999987643
No 355
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.98 E-value=0.0092 Score=56.10 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=38.9
Q ss_pred EEEEcCCCCcHHHHHHHHHH-----HhCCeE--------------EEEeccccchhcccCcHHHHHHHHHHHH-hcCCeE
Q 010888 254 ILLFGPPGTGKTMLAKAVAT-----ECKTTF--------------FNISASSVVSKWRGDSEKLIKVLFELAR-HHAPST 313 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~-----~l~~~~--------------i~v~~s~l~~~~~G~~~~~l~~~f~~a~-~~~p~V 313 (498)
++|+||.|+|||++.+.++- +.|.+. ..+...+......+.....++.+..... ...|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 224322 1122222222222233333333322222 236899
Q ss_pred EEEcCccc
Q 010888 314 IFLDEIDA 321 (498)
Q Consensus 314 L~IDEiD~ 321 (498)
+++||...
T Consensus 82 lllDEp~~ 89 (185)
T smart00534 82 VLLDELGR 89 (185)
T ss_pred EEEecCCC
Confidence 99999954
No 356
>PRK13948 shikimate kinase; Provisional
Probab=96.98 E-value=0.0009 Score=62.97 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
..++.+++|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 356688999999999999999999999999998655
No 357
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00071 Score=61.66 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+-+.|||||||||+++.+|+.+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999875
No 358
>PRK14531 adenylate kinase; Provisional
Probab=96.96 E-value=0.00085 Score=62.96 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
..+++.||||+||||+++.+|+.+|.+.+. +.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 469999999999999999999999876654 44443
No 359
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.96 E-value=0.00077 Score=63.25 Aligned_cols=29 Identities=38% Similarity=0.659 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
|+|.||||+|||++++.+++.++.+.+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999998766543
No 360
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0089 Score=63.05 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=58.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh-------c---cc---CcHHHHHHHHHHHHhcCCeE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK-------W---RG---DSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~-------~---~G---~~~~~l~~~f~~a~~~~p~V 313 (498)
+..+++.||+|+||||++..+|... |..+..+++...... + .| ........+...+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3568899999999999999999754 444555554332110 0 00 11112233344444445678
Q ss_pred EEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--cCCCcEEEEEEeCCCCCCCHH
Q 010888 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAATNLPWELDAA 372 (498)
Q Consensus 314 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~viVIaaTn~p~~Ld~a 372 (498)
|+||=......+ ......+...++... .....++|+.+|.....+...
T Consensus 303 VLIDTaGr~~rd-----------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 303 ILIDTAGYSHRN-----------LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred EEEeCCCCCccC-----------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 999865433211 122333333333221 123456777777665555433
No 361
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.96 E-value=0.0027 Score=68.11 Aligned_cols=148 Identities=22% Similarity=0.283 Sum_probs=84.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE---------Eeccc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN---------ISASS 286 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~---------v~~s~ 286 (498)
-+|.|.+.+|+.+.-.+.--.. +....+ ++..-++|+.|.|.+-||.|.|.+.+.....+-. +.++-
T Consensus 301 PSI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred cccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 3789999999999866533221 111211 4455689999999999999999998855322111 11111
Q ss_pred cchhcccCcHHHHHH-HHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHh------hCC-ccCCCcEE
Q 010888 287 VVSKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM------DGL-TQSDELVF 358 (498)
Q Consensus 287 l~~~~~G~~~~~l~~-~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~l------d~~-~~~~~~vi 358 (498)
...+ ...++.+.. .+-. ...+|++|||+|+|..- .+....+.+++= .|+ ..-+.+.-
T Consensus 379 TtD~--eTGERRLEAGAMVL---ADRGVVCIDEFDKMsDi----------DRvAIHEVMEQqtVTIaKAGIHasLNARCS 443 (818)
T KOG0479|consen 379 TTDQ--ETGERRLEAGAMVL---ADRGVVCIDEFDKMSDI----------DRVAIHEVMEQQTVTIAKAGIHASLNARCS 443 (818)
T ss_pred eecc--ccchhhhhcCceEE---ccCceEEehhcccccch----------hHHHHHHHHhcceEEeEeccchhhhcccee
Confidence 1111 122332211 1111 22479999999998421 133333332221 122 12344577
Q ss_pred EEEEeCCCCC-------------CCHHHHhcccceeE
Q 010888 359 VLAATNLPWE-------------LDAAMLRRLEKRIL 382 (498)
Q Consensus 359 VIaaTn~p~~-------------Ld~al~~Rf~~~i~ 382 (498)
|+|++|+.+. |+..+++||+..+.
T Consensus 444 VlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv 480 (818)
T KOG0479|consen 444 VLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFV 480 (818)
T ss_pred eeeecCccccccCCCCChhhccCCcHHHHhhhcEEEE
Confidence 8999987642 78899999986543
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.95 E-value=0.006 Score=66.11 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=57.7
Q ss_pred ccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc------c----------------------
Q 010888 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------G---------------------- 293 (498)
Q Consensus 245 ~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~------G---------------------- 293 (498)
.++..+...+|+.||||+|||+++-.++.+. |.+.++++..+-..... |
T Consensus 257 gGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 257 GGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred cCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccC
Confidence 3456777889999999999999999998865 66777776644321100 0
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 294 DSEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 294 ~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
..+..+..+.+......|.+|+||-+..+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 1145566677777778899999999988754
No 363
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0077 Score=62.60 Aligned_cols=101 Identities=23% Similarity=0.321 Sum_probs=69.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh--CCeEEEEeccccchhcc------c--------CcHHHHHHHHHHHHhcC
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR------G--------DSEKLIKVLFELARHHA 310 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l--~~~~i~v~~s~l~~~~~------G--------~~~~~l~~~f~~a~~~~ 310 (498)
..-+..-+||-|.||.|||||.-.++..+ ..+.++|++.+-..... | ..+..+..+...+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 35566779999999999999999988877 34899999876543322 1 23445677888888899
Q ss_pred CeEEEEcCccchhhhcc-ccchhhHHHHHHHHHHHHHh
Q 010888 311 PSTIFLDEIDAIISQRG-EARSEHEASRRLKTELLIQM 347 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~-~~~~~~~~~~~i~~~Ll~~l 347 (498)
|.+++||-|..+....- .....-...+.....|...-
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999876542 22222222344445554443
No 364
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.94 E-value=0.011 Score=57.99 Aligned_cols=133 Identities=12% Similarity=0.203 Sum_probs=73.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCe---EEEEeccccchhc--------cc------CcHHHH-------HHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKW--------RG------DSEKLI-------KVLF 303 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~---~i~v~~s~l~~~~--------~G------~~~~~l-------~~~f 303 (498)
...+-.+++.|++|||||+++..+...+... ++.+.. .....+ .. +.+..+ ....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 3444579999999999999999998877432 222221 111111 00 001111 1111
Q ss_pred HHHHh---cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccce
Q 010888 304 ELARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 380 (498)
Q Consensus 304 ~~a~~---~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~ 380 (498)
..... ..+.+|++||+..-. . .......++. ..+.-++.+|..+.....+++.++.-.+..
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~~~-------~----k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~ 152 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGDKK-------L----KSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYF 152 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCCch-------h----hhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEE
Confidence 11111 236799999984310 0 0122233332 223334777888888889999998877666
Q ss_pred eEecCCCHHHHHHHHHHh
Q 010888 381 ILVPLPDTEARRAMFESL 398 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~ 398 (498)
+.++ .+..+..-+++.+
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 6565 4566666666654
No 365
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.94 E-value=0.0015 Score=68.63 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=41.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
....++++.||+|||||+++.+++... | -.++.+.+..... ...+.. -..+.+|+|||+..+..
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-------~~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-------TRQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-------HHHHhh--hccCCEEEEEcCCCCcC
Confidence 345799999999999999999988762 4 2233333332211 111111 23457999999988754
Q ss_pred h
Q 010888 325 Q 325 (498)
Q Consensus 325 ~ 325 (498)
.
T Consensus 275 ~ 275 (449)
T TIGR02688 275 A 275 (449)
T ss_pred C
Confidence 3
No 366
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.94 E-value=0.0052 Score=62.89 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=32.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++.+.+.-++|+||||+|||+++..++... +...++++..+
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 345666778999999999999999998763 34677777654
No 367
>PRK14530 adenylate kinase; Provisional
Probab=96.94 E-value=0.00098 Score=64.15 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..++|.||||+||||+++.+|+.++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3699999999999999999999999876644
No 368
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.93 E-value=0.0026 Score=62.80 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
..+..++|.||+|+|||++++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 44567999999999999999999998743
No 369
>PRK05973 replicative DNA helicase; Provisional
Probab=96.93 E-value=0.0069 Score=59.32 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=32.0
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++..+...++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 356777889999999999999999887755 7777777654
No 370
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.93 E-value=0.015 Score=56.37 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=30.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
++.++...++|.||||+|||+++..++.+. +.+.++++.
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 346777889999999999999999876533 556666654
No 371
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.92 E-value=0.0098 Score=59.09 Aligned_cols=38 Identities=26% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..+...++|.|+||+|||+++..++... +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 35666789999999999999999887764 667766665
No 372
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.92 E-value=0.0084 Score=57.95 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.2
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
++.++...+++.|+||+|||+++..++.+. +.+.++++..+
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 346667889999999999999999887643 67777776643
No 373
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.92 E-value=0.0008 Score=61.60 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
++|.||+|+||||+++.+++.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986664
No 374
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.00098 Score=62.48 Aligned_cols=33 Identities=36% Similarity=0.716 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.++|.||||+||||+|+.|++.+ ++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHH
Confidence 58999999999999999999994 4455554443
No 375
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.91 E-value=0.0068 Score=61.73 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
+.+...-++|+||||+|||+++..++... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 45666778999999999999999998763 33778887655
No 376
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.91 E-value=0.0021 Score=66.53 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=44.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEe-ccccc---------hhcccCcHHHHHHHHHHHHhcCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNIS-ASSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFL 316 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~-~s~l~---------~~~~G~~~~~l~~~f~~a~~~~p~VL~I 316 (498)
...+++.||+|+||||+.+++...+. ..++.+. ..++. ....|.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 35789999999999999999998764 2333331 11111 0111221122445566666788999999
Q ss_pred cCcc
Q 010888 317 DEID 320 (498)
Q Consensus 317 DEiD 320 (498)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9993
No 377
>PF13245 AAA_19: Part of AAA domain
Probab=96.89 E-value=0.0017 Score=52.07 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHh------CCeEEEEec
Q 010888 252 KGILLFGPPGTGKT-MLAKAVATEC------KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT-~lAraia~~l------~~~~i~v~~ 284 (498)
.-+++.|||||||| ++++.++... +..++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 34666999999999 6666666655 445555544
No 378
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.89 E-value=0.0015 Score=66.34 Aligned_cols=70 Identities=26% Similarity=0.352 Sum_probs=46.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEec-cccc-------hhcccCcHHHHHHHHHHHHhcCCeEEEEc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-SSVV-------SKWRGDSEKLIKVLFELARHHAPSTIFLD 317 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~-s~l~-------~~~~G~~~~~l~~~f~~a~~~~p~VL~ID 317 (498)
..++++.||+|+||||+++++...+ +..++.+-- .++. .-..+........++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4689999999999999999999886 233333321 1111 00011111145667777888899999999
Q ss_pred Ccc
Q 010888 318 EID 320 (498)
Q Consensus 318 EiD 320 (498)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 993
No 379
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.88 E-value=0.0024 Score=64.92 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHH
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVL 302 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~ 302 (498)
..+.++.+.+++...+... .....-++++|+.|+|||++.+.+..-+|.....+..+.......+ . -
T Consensus 54 d~~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~-~------~ 120 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE-H------R 120 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC-C------C
Confidence 4456777777765544321 2334678999999999999999999888765433333222222111 0 1
Q ss_pred HHHHHhcCCeEEEEcCccc
Q 010888 303 FELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 303 f~~a~~~~p~VL~IDEiD~ 321 (498)
|..+.-....+++.||++.
T Consensus 121 f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 121 FGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred chhhhhcCCEEEEecCCCC
Confidence 3333444456888999863
No 380
>PRK06547 hypothetical protein; Provisional
Probab=96.87 E-value=0.0012 Score=61.65 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++.-|+|.|++|+|||++++.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34467889999999999999999999988776543
No 381
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.87 E-value=0.0029 Score=69.24 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++..+||.||+|||||++.|+||.-.
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5777899999999999999999999865
No 382
>PF13479 AAA_24: AAA domain
Probab=96.87 E-value=0.0062 Score=58.62 Aligned_cols=67 Identities=25% Similarity=0.283 Sum_probs=38.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc---chhc-----c-cCcHHHHHHHHHHH--HhcCCeEEEEcCc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV---VSKW-----R-GDSEKLIKVLFELA--RHHAPSTIFLDEI 319 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l---~~~~-----~-G~~~~~l~~~f~~a--~~~~p~VL~IDEi 319 (498)
+..++|||+||+|||++|..+ +.++ .++...- ...+ . =.+-..+...+..+ ......+|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l-~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPL-FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeE-EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 357999999999999999888 3333 2332111 0000 0 01222333334332 2345679999988
Q ss_pred cch
Q 010888 320 DAI 322 (498)
Q Consensus 320 D~l 322 (498)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 876
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.86 E-value=0.0014 Score=61.72 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=45.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEec-cccchh-------------cccCcHHHHHHHHHHHHhcCCe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISA-SSVVSK-------------WRGDSEKLIKVLFELARHHAPS 312 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~-s~l~~~-------------~~G~~~~~l~~~f~~a~~~~p~ 312 (498)
.....++|.||+|+||||++++++.... ...+.+.. .++... ..+.........+..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3457899999999999999999998762 22222211 111100 0011122345566667778899
Q ss_pred EEEEcCc
Q 010888 313 TIFLDEI 319 (498)
Q Consensus 313 VL~IDEi 319 (498)
+++++|+
T Consensus 103 ~i~igEi 109 (186)
T cd01130 103 RIIVGEV 109 (186)
T ss_pred EEEEEcc
Confidence 9999999
No 384
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.85 E-value=0.0044 Score=56.98 Aligned_cols=74 Identities=22% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccc--------hhccc----Cc-HHHHHHHHHHHHhcCCe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV--------SKWRG----DS-EKLIKVLFELARHHAPS 312 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~--------~~~~G----~~-~~~l~~~f~~a~~~~p~ 312 (498)
..++..+.|.||+|+|||+|.+.++.... .--+.++..++. ....+ -+ ....+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 56667899999999999999999998652 111233322211 00011 01 12233345566667899
Q ss_pred EEEEcCccc
Q 010888 313 TIFLDEIDA 321 (498)
Q Consensus 313 VL~IDEiD~ 321 (498)
+|++||--.
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999843
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.85 E-value=0.017 Score=59.16 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45678899999999999999999877 445554544
No 386
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.83 E-value=0.0013 Score=60.70 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
..++|.|++|+|||++++.+|++++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999987553
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.83 E-value=0.013 Score=55.82 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVA 272 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia 272 (498)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 388
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.83 E-value=0.001 Score=61.67 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.+++|.|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998665
No 389
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.82 E-value=0.0053 Score=57.46 Aligned_cols=73 Identities=23% Similarity=0.182 Sum_probs=43.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEecccc--chhcccCc-HHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSV--VSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l--~~~~~G~~-~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
.+...+.|.||+|+|||||++.++.... .--+.++...+ ......-+ ....+-.+..+-...|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4556789999999999999999998652 11122222111 00100011 11223344555567899999999843
No 390
>PRK13946 shikimate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=62.24 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
++.|++.|.+|+|||++++.+|+.+|.+++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 367999999999999999999999999988665
No 391
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.81 E-value=0.0097 Score=60.83 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=31.1
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++.....-+.|+||||+|||+++..++-.. +...++++..+
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 346666778999999999999999877422 45677787654
No 392
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.80 E-value=0.038 Score=56.20 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.++..+.|+|+=|+|||++.+.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456789999999999999999999888433
No 393
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.79 E-value=0.0016 Score=60.55 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
...++|.|++|+|||++++.+++.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999998876654
No 394
>PRK14528 adenylate kinase; Provisional
Probab=96.79 E-value=0.0013 Score=61.87 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+.+++.||||+|||++++.+++.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4689999999999999999999998776543
No 395
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.79 E-value=0.0015 Score=63.69 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
..++|.||||+||||+|+.+|+.++.+++.+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999997666543
No 396
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.76 E-value=0.0097 Score=57.98 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 45666789999999999999999887654 778777764
No 397
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.75 E-value=0.0026 Score=66.36 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=44.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec-cccc-----------hhcccCcHHHHHHHHHHHHhcCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA-SSVV-----------SKWRGDSEKLIKVLFELARHHAPSTI 314 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~-s~l~-----------~~~~G~~~~~l~~~f~~a~~~~p~VL 314 (498)
..+|+.||+|+||||+++++.+.+. ..++.+-- .++. ...+|............+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988762 33444421 1211 01112111234455666677899999
Q ss_pred EEcCcc
Q 010888 315 FLDEID 320 (498)
Q Consensus 315 ~IDEiD 320 (498)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999994
No 398
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.75 E-value=0.0047 Score=56.04 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
++|.|+||+|||++++.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 666676765433
No 399
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.75 E-value=0.0039 Score=64.20 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEe-ccccch------------h-cccCcHHHHHHHHHHHHhcCCeE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVS------------K-WRGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~-~s~l~~------------~-~~G~~~~~l~~~f~~a~~~~p~V 313 (498)
...++++.|++|+||||+++++..... ..++.+- ..++.- . ..|...-....+++.+....|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 347899999999999999999999873 2333331 111110 0 01112223466778888899999
Q ss_pred EEEcCcc
Q 010888 314 IFLDEID 320 (498)
Q Consensus 314 L~IDEiD 320 (498)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999994
No 400
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.74 E-value=0.16 Score=50.79 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=56.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHH
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 298 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~ 298 (498)
+++=-+++.+-+.++... +..|..+.||.|.+|+||+++++..|.-.+..++.+..+.-. ...+....
T Consensus 9 ~lVlf~~ai~hi~ri~Rv----------L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV----------LSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHH----------HCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH----------HcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHHH
Confidence 455566676666665422 235667899999999999999999999999999988754321 11223445
Q ss_pred HHHHHHHHH-hcCCeEEEEcCcc
Q 010888 299 IKVLFELAR-HHAPSTIFLDEID 320 (498)
Q Consensus 299 l~~~f~~a~-~~~p~VL~IDEiD 320 (498)
++.++..+- ...|.+++|+|-+
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHhccCCCeEEEecCcc
Confidence 666665554 4567888887653
No 401
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.73 E-value=0.011 Score=61.10 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=30.4
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++.....-+.|+||||||||+++..++-.. +...++++...
T Consensus 121 GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 121 GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 345666778899999999999999887422 24677777643
No 402
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.73 E-value=0.0012 Score=57.11 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l 275 (498)
|+|.|+|||||||+|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.72 E-value=0.023 Score=52.51 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
-+++.||||+|||++++.++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 36889999999999999998876 5666666654
No 404
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.71 E-value=0.016 Score=53.23 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~ 281 (498)
-+.+|+++|.|||++|-.+|-+. |..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46788999999999999998766 544443
No 405
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.71 E-value=0.013 Score=53.65 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHhC----CeEEEEec
Q 010888 252 KGILLFGPPGTGKTM-LAKAVATECK----TTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~-lAraia~~l~----~~~i~v~~ 284 (498)
+++++.||+|||||+ ++..+..... ..++.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 579999999999999 5555555443 33555544
No 406
>PRK06696 uridine kinase; Validated
Probab=96.71 E-value=0.0044 Score=60.02 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
.+.-|.|.|++|+||||+|+.|+..+ |.+++.++..++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34568899999999999999999998 6777777765553
No 407
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.71 E-value=0.0068 Score=68.78 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=41.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---C--CeEEEEecccc----chhcccCcHHHHHHHHHHHH----------hcCCe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISASSV----VSKWRGDSEKLIKVLFELAR----------HHAPS 312 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~--~~~i~v~~s~l----~~~~~G~~~~~l~~~f~~a~----------~~~p~ 312 (498)
+-++|.|+||||||++++++...+ + .+++-+.++.- .....|.....++.++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999997755 3 34443333211 11122322333444432110 12357
Q ss_pred EEEEcCccch
Q 010888 313 TIFLDEIDAI 322 (498)
Q Consensus 313 VL~IDEiD~l 322 (498)
+|+|||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999665
No 408
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.70 E-value=0.0017 Score=60.55 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-+++.||||+||||+++.+++.+|... ++..++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~ 37 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDL 37 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHH
Confidence 3588999999999999999999988654 444443
No 409
>PLN02200 adenylate kinase family protein
Probab=96.70 E-value=0.0021 Score=62.97 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
.+..+++.|+||+||||+++.+++.+|.+ .++++++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34568999999999999999999999865 566666653
No 410
>PRK02496 adk adenylate kinase; Provisional
Probab=96.68 E-value=0.0016 Score=60.94 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+++.||||+|||++++.++..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998766544
No 411
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.68 E-value=0.0028 Score=64.70 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=32.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
...+...++|.|+||||||++++.++..+|.+++.++
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 3567789999999999999999999999999999443
No 412
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.68 E-value=0.0081 Score=56.18 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++.-+.|.||+|+|||||.+.+...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 456677999999999999999999743
No 413
>PLN02674 adenylate kinase
Probab=96.66 E-value=0.0042 Score=61.11 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...++|.||||+||+|+++.+|+.++.+. ++..++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 46799999999999999999999998644 4555554
No 414
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.66 E-value=0.0042 Score=66.20 Aligned_cols=92 Identities=23% Similarity=0.150 Sum_probs=56.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch----
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---- 289 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~---- 289 (498)
..+++++.......+.+.+.+. .|..-+|++||+|+|||+...++.++++.+...+..-+-.-
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~-------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~ 300 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN-------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL 300 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh-------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec
Confidence 3446666666666666666553 23334778999999999999999999865444222111100
Q ss_pred ---------hcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 290 ---------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 290 ---------~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
.-.|- .....++......|+||++.||-.
T Consensus 301 ~gI~Q~qVN~k~gl---tfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 301 PGINQVQVNPKIGL---TFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred CCcceeecccccCC---CHHHHHHHHhccCCCeEEEeccCC
Confidence 01111 112334445567899999999954
No 415
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.65 E-value=0.0017 Score=62.31 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++|.||||+||||+|+.+++.++.+.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766543
No 416
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.65 E-value=0.02 Score=54.65 Aligned_cols=119 Identities=24% Similarity=0.301 Sum_probs=72.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc---------------------------------hh
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV---------------------------------SK 290 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~---------------------------------~~ 290 (498)
+.+-+.=++|.|+.|||||.+.+.++.=. +....+++...-. ..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 35555668899999999999999987733 4444444321000 00
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 370 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld 370 (498)
......+.+..+.+..+.....|++||-+..++... +......++..+..+...+. + |.-|-.|..++
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~---------~~~~vl~fm~~~r~l~d~gK-v--IilTvhp~~l~ 171 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD---------SEDAVLNFMTFLRKLSDLGK-V--IILTVHPSALD 171 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc---------cHHHHHHHHHHHHHHHhCCC-E--EEEEeChhhcC
Confidence 112234455666666677777999999998886542 12234445555555554444 3 33455667788
Q ss_pred HHHHhcc
Q 010888 371 AAMLRRL 377 (498)
Q Consensus 371 ~al~~Rf 377 (498)
+++.-|+
T Consensus 172 e~~~~ri 178 (235)
T COG2874 172 EDVLTRI 178 (235)
T ss_pred HHHHHHH
Confidence 8777654
No 417
>PRK13764 ATPase; Provisional
Probab=96.64 E-value=0.004 Score=68.68 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=41.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe-cccc-----chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~-~s~l-----~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
..++|+.||||+||||++++++..+. ..+..+- ..++ ...+.. ...........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998873 3232221 1111 111110 000112222333456799999999943
No 418
>PRK04040 adenylate kinase; Provisional
Probab=96.64 E-value=0.0023 Score=60.56 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCeEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC--KTTFF 280 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l--~~~~i 280 (498)
+..++++|+|||||||+++.+++.+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3568999999999999999999999 55543
No 419
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.64 E-value=0.0041 Score=61.23 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
|+|.|+||+||||+|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 456676665444
No 420
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.62 E-value=0.0019 Score=62.09 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.|+++||||+|||++++.+|+.++.+.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766543
No 421
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0015 Score=60.21 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++++|.|||||||+++.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8998887665
No 422
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.0088 Score=66.08 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+|+..+-|.||+|+||||+|..+-+-.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5677789999999999999999998755
No 423
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0024 Score=64.56 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=33.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
+.-++|.||+++|||-+|-.+|++++.+++.++...+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvY 40 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVY 40 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhc
Confidence 35689999999999999999999999999999876554
No 424
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.60 E-value=0.071 Score=56.63 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc----------h-----hcc----c-CcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----------S-----KWR----G-DSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~----------~-----~~~----G-~~~~~l~~~f~~a 306 (498)
++.-++|.|++|+||||++..+|..+ |..+..+++.... + .+. + .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999877 5666666653221 0 000 0 1112233345555
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
+.....+|+||=...+
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556689999987654
No 425
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.60 E-value=0.0077 Score=60.24 Aligned_cols=68 Identities=28% Similarity=0.306 Sum_probs=37.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch---hc-ccCcHHHHHHHH----HHHHhcCCeEEEEcCccch
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---KW-RGDSEKLIKVLF----ELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~---~~-~G~~~~~l~~~f----~~a~~~~p~VL~IDEiD~l 322 (498)
|+|+|-||+|||++|+.|+..+ +..+..++-..+.- .| ....++..+..+ ..+... ..|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 7899999999999999999976 56677776544331 12 123445444433 333333 379999998766
No 426
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.011 Score=53.71 Aligned_cols=74 Identities=27% Similarity=0.324 Sum_probs=44.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeccccch-------hccc----CcH-HHHHHHHHHHHhcCCeE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVS-------KWRG----DSE-KLIKVLFELARHHAPST 313 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~~s~l~~-------~~~G----~~~-~~l~~~f~~a~~~~p~V 313 (498)
..+...+.|.||+|+|||+++++++..... --+.++...+.. ...+ -+. ...+-.+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 456678999999999999999999987632 112333322110 0000 111 12223345555567899
Q ss_pred EEEcCccc
Q 010888 314 IFLDEIDA 321 (498)
Q Consensus 314 L~IDEiD~ 321 (498)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999854
No 427
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.59 E-value=0.0087 Score=61.02 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=46.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEe-ccccchh------------cccCcHHHHHHHHHHHHhcCCe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVSK------------WRGDSEKLIKVLFELARHHAPS 312 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~-~s~l~~~------------~~G~~~~~l~~~f~~a~~~~p~ 312 (498)
.....++++.||+|+||||+++++...+. ...+.+. ..++.-. ..+...-....++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 34557999999999999999999998772 2222221 1111100 0011122345567777778899
Q ss_pred EEEEcCcc
Q 010888 313 TIFLDEID 320 (498)
Q Consensus 313 VL~IDEiD 320 (498)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999994
No 428
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.59 E-value=0.057 Score=49.62 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=72.8
Q ss_pred EcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHH
Q 010888 257 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 336 (498)
Q Consensus 257 ~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 336 (498)
.+.+||||||++.++++-++- +-.+.-.++.++ ...+.++.+.+........++|.|==......|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR---------- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER---------- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH----------
Confidence 478999999999999998874 344444555443 345556666666654556788888554443221
Q ss_pred HHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHH--------HhcccceeEecC--CCHHHHHHHHHHhcCCCC
Q 010888 337 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM--------LRRLEKRILVPL--PDTEARRAMFESLLPSQT 403 (498)
Q Consensus 337 ~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al--------~~Rf~~~i~~~~--Pd~~eR~~IL~~~l~~~~ 403 (498)
+++.+.+-.....+.....++-+||-.-..+...+.+ ..|=+.+-.+.. .+...-..|++..++...
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 2232222222222222233566666654433322222 334444444433 345666677777765443
No 429
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.58 E-value=0.0028 Score=60.52 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=17.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
-.+++||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999998777766655
No 430
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.022 Score=59.34 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.+++.+.+.+.+...+..+..+. ..++..++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 45677777776665443332222 3456778999999999999999999866 5555555553
No 431
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.57 E-value=0.0073 Score=65.40 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=56.4
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEec-cccch
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 289 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~-s~l~~ 289 (498)
..+++++.-..+..+.+++.+.. +..-++++||+|+||||+.+++.+++. ..++.+-- -++.-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~ 284 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI 284 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence 34566665566666666665422 223478999999999999998888773 33443321 11110
Q ss_pred hcc------cCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 290 KWR------GDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 290 ~~~------G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
... .............+....|.+|++.|+-.
T Consensus 285 ~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 285 EGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred CCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 000 01111233455566678899999999943
No 432
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.57 E-value=0.016 Score=65.62 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=51.4
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeccccchh----------------cccCcHHHHHHHHHHH
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 306 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~---l~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a 306 (498)
++.++...++|+||||||||+|+..++.. .|...++++..+-... -....+..+..+-...
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 34667788999999999999999765543 3667777766442210 0011233333333334
Q ss_pred HhcCCeEEEEcCccchhh
Q 010888 307 RHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l~~ 324 (498)
+...+.+|+||-+..+.+
T Consensus 135 ~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 135 RSGALDIVVIDSVAALVP 152 (790)
T ss_pred hcCCCeEEEEcchhhhcc
Confidence 556789999999999986
No 433
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.56 E-value=0.0038 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l 275 (498)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 434
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.55 E-value=0.026 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~ 273 (498)
..-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
No 435
>PRK14527 adenylate kinase; Provisional
Probab=96.55 E-value=0.002 Score=60.78 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.+.-+++.||||+||||+|+.++++++.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34679999999999999999999999865543
No 436
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.54 E-value=0.0089 Score=62.60 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++..++|.||||+|||++++.+++...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 45556799999999999999999999763
No 437
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.54 E-value=0.0077 Score=57.23 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=32.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeccccchh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSK 290 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~s~l~~~ 290 (498)
..|.-+++.|+||+|||+++..+...+ +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 445778999999999999999999998 788899998777544
No 438
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.54 E-value=0.0034 Score=65.13 Aligned_cols=23 Identities=52% Similarity=0.638 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999988
No 439
>PTZ00035 Rad51 protein; Provisional
Probab=96.54 E-value=0.017 Score=59.68 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=30.5
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
++..+..-+.|+||||+|||+++..++... +...++++...
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 346666778899999999999999987533 34566776543
No 440
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.038 Score=59.93 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
......+.|.||+|+|||+++..++..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445788999999999999999998764
No 441
>PRK10867 signal recognition particle protein; Provisional
Probab=96.53 E-value=0.099 Score=55.76 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=47.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh----------------c---c-cCcHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------W---R-GDSEKLIKVLFE 304 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~----------------~---~-G~~~~~l~~~f~ 304 (498)
.++.-+++.|++|+||||++..+|..+ |..+..+++...... + . ............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 345778999999999999888888755 556666665422110 0 0 122333344555
Q ss_pred HHHhcCCeEEEEcCccch
Q 010888 305 LARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 305 ~a~~~~p~VL~IDEiD~l 322 (498)
.++.....+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666789999988655
No 442
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.52 E-value=0.0052 Score=71.98 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=82.6
Q ss_pred CCCCceEEEEcCCCCcHHHH-HHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhc--------------CCe
Q 010888 248 LSPWKGILLFGPPGTGKTML-AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH--------------APS 312 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~l-Araia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~--------------~p~ 312 (498)
....++++++||||+|||++ .-++-+++-..++.+|.+.-. .++..+..+-+...-. .-.
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 46668999999999999996 456667777778877765331 1222222221111100 114
Q ss_pred EEEEcCccchhhhccccc-hhhHHHHHHHHH--HHHHhhCCccCCCcEEEEEEeCCCCCC-----CHHHHhcccceeEec
Q 010888 313 TIFLDEIDAIISQRGEAR-SEHEASRRLKTE--LLIQMDGLTQSDELVFVLAATNLPWEL-----DAAMLRRLEKRILVP 384 (498)
Q Consensus 313 VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~--Ll~~ld~~~~~~~~viVIaaTn~p~~L-----d~al~~Rf~~~i~~~ 384 (498)
|||.|||+ |+..+.... ..--..+.++.. +...+..-...-.++++.+++|++.+. ..++.++- ..+++.
T Consensus 1566 VLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~ 1643 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCC 1643 (3164)
T ss_pred EEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEec
Confidence 99999998 443322111 111111222111 111111000112358889999998653 34444443 568889
Q ss_pred CCCHHHHHHHHHHhcCCC
Q 010888 385 LPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 385 ~Pd~~eR~~IL~~~l~~~ 402 (498)
.|.......|.+.++...
T Consensus 1644 ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1644 YPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 999999988888776543
No 443
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.52 E-value=0.0069 Score=61.13 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~s~l 287 (498)
.-+++.|+|||||||+|+.+++++ +.. .++..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~--~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAV--NVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCE--EEeccHH
Confidence 458889999999999999999998 544 4444443
No 444
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.51 E-value=0.028 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.+...++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999988
No 445
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.51 E-value=0.013 Score=58.25 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccc---------hhcccC---------------
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV---------SKWRGD--------------- 294 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~---------~~~~G~--------------- 294 (498)
.....-.=|+||||+|||.++-.+|-.. +...++++...-. ..+.-.
T Consensus 35 i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 35 IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCC
Confidence 3443445599999999999999887654 3457888764321 111100
Q ss_pred cH---HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 295 SE---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 295 ~~---~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
.+ ..+..+........-.+|+||-+-.+.........+.......+..++..+..+....+ +.||.|
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~-iaVvvT 184 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYN-IAVVVT 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCC-ceEEee
Confidence 11 11122222223445689999999998764322111122223455556555655544333 445544
No 446
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.50 E-value=0.0081 Score=54.08 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=43.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeccc---cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASS---VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~~s~---l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
..+...+.|.||+|+|||++++.++..... --+.++... +...+.+ ....+-.+..+-...|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 466678999999999999999999986621 112222110 0000111 12223334555667899999999854
No 447
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.006 Score=56.44 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||+|.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4566789999999999999999999876
No 448
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.50 E-value=0.014 Score=59.64 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=30.8
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh------C---CeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC------K---TTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l------~---~~~i~v~~s~ 286 (498)
++.++..-+.++||||+|||+++..++... | ...++++..+
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 346667778999999999999999987632 1 3567777654
No 449
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.50 E-value=0.0036 Score=64.28 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..+.|.|+||+|||+|++.+++.++.+++.-.+.+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHH
Confidence 479999999999999999999999988865554433
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.49 E-value=0.02 Score=62.19 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=32.0
Q ss_pred ccCCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCeEEEEecc
Q 010888 245 TGLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISAS 285 (498)
Q Consensus 245 ~~~~~~~~~vLL~GppGtGKT~lAraia~~----l~~~~i~v~~s 285 (498)
.++.++.+.+|+.||||||||+++..++.+ .|.+.++++..
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 345677889999999999999999988543 25677777653
No 451
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.015 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++--|-|.||+|||||||.+.||.-.
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555678899999999999999999854
No 452
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.48 E-value=0.0022 Score=58.06 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=26.5
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 256 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 256 L~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
|.||||+|||++++.||++++.. .++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHH
Confidence 67999999999999999999864 5565555443
No 453
>PRK13808 adenylate kinase; Provisional
Probab=96.48 E-value=0.017 Score=59.21 Aligned_cols=34 Identities=26% Similarity=0.562 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.|+|+||||+|||++++.|+..++.+.+ +..++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 4899999999999999999999987554 444444
No 454
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.47 E-value=0.0031 Score=56.23 Aligned_cols=31 Identities=29% Similarity=0.286 Sum_probs=26.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.++...++|.|+.|+|||++++.+++.++..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3455679999999999999999999999754
No 455
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.46 E-value=0.0044 Score=63.49 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe-ccccchh------cccCcHHHHHHHHHHHHhcCCeEEEEcC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDE 318 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~-~s~l~~~------~~G~~~~~l~~~f~~a~~~~p~VL~IDE 318 (498)
..++|+.|++|+||||+++++.... +..++.+- ..++... ......-....++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999876 23333332 1222110 0011112345667777788999999999
Q ss_pred c
Q 010888 319 I 319 (498)
Q Consensus 319 i 319 (498)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 9
No 456
>PRK10436 hypothetical protein; Provisional
Probab=96.46 E-value=0.0079 Score=64.60 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=58.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe-ccccch
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVS 289 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~-~s~l~~ 289 (498)
..+++++.-.+...+.+++.+.. +..-+|+.||+|+||||+..++.++++ ..++.+- +-+..-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 34677776666666667665532 334689999999999999988877763 3333331 111110
Q ss_pred hc-----cc-CcHHHHHHHHHHHHhcCCeEEEEcCcc
Q 010888 290 KW-----RG-DSEKLIKVLFELARHHAPSTIFLDEID 320 (498)
Q Consensus 290 ~~-----~G-~~~~~l~~~f~~a~~~~p~VL~IDEiD 320 (498)
.. ++ .........++.+....|.+|++.|+-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 00 01 111224455666677899999999994
No 457
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.45 E-value=0.019 Score=53.68 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh--C-----------CeEEEEeccccch----hcc---c--------------
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC--K-----------TTFFNISASSVVS----KWR---G-------------- 293 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l--~-----------~~~i~v~~s~l~~----~~~---G-------------- 293 (498)
..+..-++|.||||+|||+++..++..+ + .++++++...-.. .+. +
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence 4455668999999999999999998865 2 3566665532210 000 0
Q ss_pred ---------------CcHHHHHHHHHHHHh-cCCeEEEEcCccchhhh
Q 010888 294 ---------------DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 294 ---------------~~~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 325 (498)
.....+..+.+.+.. ..+.+|+||.+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012233445555566 57899999999999865
No 458
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.45 E-value=0.039 Score=65.00 Aligned_cols=75 Identities=12% Similarity=0.252 Sum_probs=50.4
Q ss_pred eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC--CCCHHHHhcccceeEecCCCHH
Q 010888 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 389 (498)
Q Consensus 312 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~--~Ld~al~~Rf~~~i~~~~Pd~~ 389 (498)
-||+|||+..|..... +.+...+..... ..+.-.|.+|.+|.+|. .+...++.-|...|-|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~---------kevE~lI~rLAq--kGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG---------KKVEELIARLAQ--KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh---------HHHHHHHHHHHH--HhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 3899999988764311 122222222221 12344588899999986 4777778889999999999988
Q ss_pred HHHHHHHH
Q 010888 390 ARRAMFES 397 (498)
Q Consensus 390 eR~~IL~~ 397 (498)
+-+.||..
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 88888754
No 459
>PRK04182 cytidylate kinase; Provisional
Probab=96.44 E-value=0.003 Score=58.34 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.|+|.|++|+|||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988765
No 460
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.44 E-value=0.017 Score=59.65 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
+..+..-+.++|+||+|||+++..++... +.+.++++..+
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 45666778899999999999999887432 23677777654
No 461
>PRK01184 hypothetical protein; Provisional
Probab=96.41 E-value=0.0031 Score=58.96 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
-++|+||||+||||+++ ++++.|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 57899999999999987 788888877654
No 462
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.41 E-value=0.0032 Score=57.68 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
|.|.|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999886543
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.41 E-value=0.0033 Score=64.98 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=46.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEe-ccccchh--------c----ccCcHHHHHHHHHHHHhcCCeE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNIS-ASSVVSK--------W----RGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~-~s~l~~~--------~----~G~~~~~l~~~f~~a~~~~p~V 313 (498)
....++|+.||+|+||||+++++...+.. .++.+- ..++.-. + .+...-....++..+....|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 44578999999999999999999998732 233221 1111100 0 0111223456777777889999
Q ss_pred EEEcCcc
Q 010888 314 IFLDEID 320 (498)
Q Consensus 314 L~IDEiD 320 (498)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999993
No 464
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.40 E-value=0.0058 Score=64.50 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+.|.|.|++|||||||++++++.+|.+.+.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999999877543
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.40 E-value=0.0028 Score=58.02 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
|.|+|+||||||||++.+++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999999 87766
No 466
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.39 E-value=0.0044 Score=56.75 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 289 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~ 289 (498)
..+.|+|.||+|||++|+++.+.+ +.+.+.++...+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 468899999999999999999987 78888888876653
No 467
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.38 E-value=0.025 Score=61.67 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred hhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh---------------------------
Q 010888 242 KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------------------- 290 (498)
Q Consensus 242 ~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~--------------------------- 290 (498)
+...++.++...+||+|+||+|||+++..++.+. |.+.++++..+-...
T Consensus 22 ~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~ 101 (509)
T PRK09302 22 DITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDAS 101 (509)
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecC
Q ss_pred ---------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 291 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 291 ---------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
.....+..+..+.+......+..|+||-+..+....... ..+...+...+..+...+..++++.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~-------~~~r~~l~~L~~~Lk~~g~TvLlt~ 174 (509)
T PRK09302 102 PDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNE-------AVVRRELRRLFAWLKQKGVTAVITG 174 (509)
T ss_pred cccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCH-------HHHHHHHHHHHHHHHhCCCEEEEEE
No 468
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.38 E-value=0.0053 Score=62.86 Aligned_cols=71 Identities=23% Similarity=0.433 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEe-ccccch------hcccCcHHHHHHHHHHHHhcCCeEEEEc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVS------KWRGDSEKLIKVLFELARHHAPSTIFLD 317 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~-~s~l~~------~~~G~~~~~l~~~f~~a~~~~p~VL~ID 317 (498)
...++++.|++|+|||+++++++.+. ...++.+. ..++.- .+.....-....++..+....|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34789999999999999999999874 22333221 112210 0101111235667778888999999999
Q ss_pred Ccc
Q 010888 318 EID 320 (498)
Q Consensus 318 EiD 320 (498)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 993
No 469
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.37 E-value=0.0056 Score=61.23 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=46.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC----eEEEE---------eccccc-hhcccCcHHHHHHHHHHHHhcCCeEEEEc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT----TFFNI---------SASSVV-SKWRGDSEKLIKVLFELARHHAPSTIFLD 317 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~----~~i~v---------~~s~l~-~~~~G~~~~~l~~~f~~a~~~~p~VL~ID 317 (498)
.=||++||+|+||||...++-.+.+. +.+.+ +...+. ..-+|.-.......++.|....|+||++-
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvG 205 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVG 205 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34788999999999999999888853 23322 111111 22344444445556667777889999999
Q ss_pred Cccc
Q 010888 318 EIDA 321 (498)
Q Consensus 318 EiD~ 321 (498)
|+-.
T Consensus 206 EmRD 209 (353)
T COG2805 206 EMRD 209 (353)
T ss_pred cccc
Confidence 9844
No 470
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.36 E-value=0.029 Score=52.17 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4666789999999999999999999865
No 471
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.35 E-value=0.032 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+..+|.||.|+|||++.++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999986533
No 472
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.34 E-value=0.0039 Score=62.74 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
++|.||+|+|||++|..++++++..++.++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999988887766444
No 473
>PLN02840 tRNA dimethylallyltransferase
Probab=96.33 E-value=0.0037 Score=65.90 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-++|.||+|+|||+++..++.+++.+++..+...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 458899999999999999999999988877765433
No 474
>PRK14529 adenylate kinase; Provisional
Probab=96.33 E-value=0.01 Score=57.70 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.++|.||||+||||+++.+++.++.+.+ +..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 4889999999999999999999987664 334443
No 475
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.32 E-value=0.011 Score=56.73 Aligned_cols=24 Identities=50% Similarity=0.670 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-+.+.||+|||||++|-+.|-++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999998766
No 476
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.32 E-value=0.019 Score=65.42 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=43.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc----hhcccCcHHHHHHHHHH-HH----hcCCeEEEEcC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----SKWRGDSEKLIKVLFEL-AR----HHAPSTIFLDE 318 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~----~~~~G~~~~~l~~~f~~-a~----~~~p~VL~IDE 318 (498)
.+-++|.|+||||||++++++...+ |..++.+.++... ....|.....++.+... .. .....+|+|||
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDE 447 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDE 447 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEEC
Confidence 3567899999999999999997654 6666655443221 11122222223332111 11 12457999999
Q ss_pred ccchh
Q 010888 319 IDAII 323 (498)
Q Consensus 319 iD~l~ 323 (498)
+-.+.
T Consensus 448 asMv~ 452 (744)
T TIGR02768 448 AGMVG 452 (744)
T ss_pred cccCC
Confidence 96663
No 477
>PRK08233 hypothetical protein; Provisional
Probab=96.31 E-value=0.0046 Score=57.27 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK-TTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~-~~~i~v~~ 284 (498)
.-|.|.|+||+||||+|+.++..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4577899999999999999999985 44444443
No 478
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.013 Score=54.47 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=34.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 288 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~ 288 (498)
..+..+.|+|.+|+||||+|.++.+.+ |...+.+++..+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 445678899999999999999999987 8899999887654
No 479
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.30 E-value=0.0033 Score=64.01 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-++|.||+|+|||++|..+|++++.+++..+.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 468899999999999999999999988877665433
No 480
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.29 E-value=0.16 Score=54.14 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh----------------c---ccC-cHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------W---RGD-SEKLIKVLFEL 305 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~----------------~---~G~-~~~~l~~~f~~ 305 (498)
++..+++.|++|+||||++..+|..+ |..+..+++...... + .+. .........+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45778999999999999988888764 556766766422110 0 001 12333455555
Q ss_pred HHhcCCeEEEEcCccch
Q 010888 306 ARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~l 322 (498)
+....+.+|+||=...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 65666789999987654
No 481
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.29 E-value=0.19 Score=51.28 Aligned_cols=96 Identities=24% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCeEEEEcCccchhhhccccchh----hHHHHHHHHHHHHHhhCCccCCCcEEE--EEEeCC---CC--CCCHHHHhccc
Q 010888 310 APSTIFLDEIDAIISQRGEARSE----HEASRRLKTELLIQMDGLTQSDELVFV--LAATNL---PW--ELDAAMLRRLE 378 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~~r~~~~~~----~~~~~~i~~~Ll~~ld~~~~~~~~viV--IaaTn~---p~--~Ld~al~~Rf~ 378 (498)
.|.++-||++..+.......... +...=.+...|+..+.+-..-....+| +++|.. +. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 47788999999998764322111 111123445555554433322222333 555532 22 34545544321
Q ss_pred ---------------------ceeEecCCCHHHHHHHHHHhcCCCCCC
Q 010888 379 ---------------------KRILVPLPDTEARRAMFESLLPSQTGE 405 (498)
Q Consensus 379 ---------------------~~i~~~~Pd~~eR~~IL~~~l~~~~~~ 405 (498)
..+.++..+.+|-+.+++.+....-+.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 157788889999999999887665554
No 482
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.29 E-value=0.02 Score=53.02 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||+|.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4556779999999999999999999865
No 483
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.24 E-value=0.007 Score=59.97 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=33.3
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
+..+....+|++|+||||||+++...+.+. |.+.++++..+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 346777889999999999999999987765 67788776543
No 484
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.24 E-value=0.022 Score=59.48 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+..+++.||.|||||++.+++.+.+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 447899999999999999999998873
No 485
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.24 E-value=0.036 Score=59.77 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+.-++|.||+|+||||++..+|..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34568899999999999999999866
No 486
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.24 E-value=0.11 Score=50.64 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 010888 254 ILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~ 274 (498)
-+|.||||+|||+++..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999874
No 487
>PRK14526 adenylate kinase; Provisional
Probab=96.24 E-value=0.0048 Score=59.46 Aligned_cols=33 Identities=30% Similarity=0.627 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.++|.||||+||||+++.++..++.+.+ +..++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChH
Confidence 4889999999999999999999886554 44444
No 488
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.23 E-value=0.025 Score=53.72 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s 285 (498)
.++|+.|++|+|||++++.+...+ ...++-++..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 489999999999999999987766 3456666653
No 489
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.22 E-value=0.026 Score=52.65 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||++++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566789999999999999999999865
No 490
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.20 E-value=0.012 Score=65.06 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=55.3
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---eEEEEecc-ccc--
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISAS-SVV-- 288 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~---~~i~v~~s-~l~-- 288 (498)
.+++++.-..+..+.+.+.+. .+...+|++||+|+||||+..++.+.++. .++.+--. +..
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~-------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~ 359 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH-------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLP 359 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCC
Confidence 345565555555555555442 22345889999999999999888887742 33322110 111
Q ss_pred ---hhcc-cCcHHHHHHHHHHHHhcCCeEEEEcCccc
Q 010888 289 ---SKWR-GDSEKLIKVLFELARHHAPSTIFLDEIDA 321 (498)
Q Consensus 289 ---~~~~-G~~~~~l~~~f~~a~~~~p~VL~IDEiD~ 321 (498)
...+ ..........++.+....|.+|++.|+-.
T Consensus 360 ~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 360 GINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 0000 01111234456667778999999999943
No 491
>PLN02165 adenylate isopentenyltransferase
Probab=96.19 E-value=0.0043 Score=63.48 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
...++|.||+|+|||+++..+|..++..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 3468999999999999999999999887665543
No 492
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.17 E-value=0.0079 Score=55.74 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++..+.|.|+||+|||++++.++..+ +..+..++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 44678999999999999999999987 4445556553
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.17 E-value=0.0054 Score=57.63 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
..++|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46889999999999999999998876543
No 494
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.15 Score=53.23 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=60.2
Q ss_pred CeEEEEcCccchhh----hccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe--CCC--------------CCCC
Q 010888 311 PSTIFLDEIDAIIS----QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT--NLP--------------WELD 370 (498)
Q Consensus 311 p~VL~IDEiD~l~~----~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT--n~p--------------~~Ld 370 (498)
|-++.||++.++.. .+.....-.-..-.+...+...+.+-...+ .++.++. .-+ ..++
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g--~vi~a~s~~~~~~a~~h~gv~~y~pr~llg 393 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFG--SVIMAISGVTTPSAFGHLGVAPYVPRKLLG 393 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccc--eEEEEecccccchhccccccccCCchHhcC
Confidence 56888999999987 222221111111234445555555443333 3333333 111 1133
Q ss_pred HHHHh---cccceeEecCCCHHHHHHHHHHhcCCCCCCCCC----CHHHHHHHhcCCcHHHHHHHHH
Q 010888 371 AAMLR---RLEKRILVPLPDTEARRAMFESLLPSQTGEESL----PYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 371 ~al~~---Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~----~l~~La~~t~g~s~~dL~~L~~ 430 (498)
+.... -| ..++++.++.+|-.+++..++...-+..++ ..+++-- ..+.+|+.++.+|.
T Consensus 394 ~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~f-LSngNP~l~~~lca 458 (461)
T KOG3928|consen 394 EEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYF-LSNGNPSLMERLCA 458 (461)
T ss_pred ccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhh-hcCCCHHHHHHHHH
Confidence 33322 34 346778889999999998887665443222 2333322 23567777766654
No 495
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.0055 Score=56.83 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.++..++|.|+||+|||++++.+++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999999885
No 496
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.12 E-value=0.019 Score=59.04 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=44.3
Q ss_pred Cc-cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEE
Q 010888 217 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNI 282 (498)
Q Consensus 217 ~~-~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v 282 (498)
|+ ++.|+++.+.++.+.+...-. ++....+-++|.||+|+|||++++.+-+-+ ..+++.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQ------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHh------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 45 899999999999887654321 123333567899999999999999999877 3455554
No 497
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.10 E-value=0.036 Score=51.05 Aligned_cols=28 Identities=39% Similarity=0.632 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||+|++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566789999999999999999999875
No 498
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.09 E-value=0.073 Score=52.14 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=52.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCeE--------------EEEeccccchhcccCcH---HHHHHHHHHHHhc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC-----KTTF--------------FNISASSVVSKWRGDSE---KLIKVLFELARHH 309 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l-----~~~~--------------i~v~~s~l~~~~~G~~~---~~l~~~f~~a~~~ 309 (498)
+.++|+||..+|||++.|.++-.. |..+ ..+...+-.....+... +.+..+++.+.
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~-- 121 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNAT-- 121 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH----
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcc--
Confidence 578999999999999999998744 4221 12222211111111222 23444555443
Q ss_pred CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 310 APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 310 ~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
..++|+|||+..= ........+...++..+. .. .+..++.+|+..+.
T Consensus 122 ~~sLvliDE~g~g--------T~~~eg~ai~~aile~l~---~~-~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 122 EKSLVLIDELGRG--------TNPEEGIAIAIAILEYLL---EK-SGCFVIIATHFHEL 168 (235)
T ss_dssp TTEEEEEESTTTT--------SSHHHHHHHHHHHHHHHH---HT-TT-EEEEEES-GGG
T ss_pred cceeeecccccCC--------CChhHHHHHHHHHHHHHH---Hh-ccccEEEEeccchh
Confidence 4589999999532 112222334444444443 11 12456778887654
No 499
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.09 E-value=0.03 Score=63.21 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++..+-|.|++|||||||+|.+..-.
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556679999999999999999998855
No 500
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.08 E-value=0.09 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
+.+-++|+||.|+|||++.+.++..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4456899999999999999998753
Done!