Query 010888
Match_columns 498
No_of_seqs 388 out of 3184
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:23:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.6E-45 8.9E-50 379.5 24.9 258 204-480 134-395 (405)
2 4b4t_H 26S protease regulatory 100.0 1.1E-43 3.6E-48 371.8 25.3 262 209-489 200-467 (467)
3 4b4t_M 26S protease regulatory 100.0 9.8E-44 3.3E-48 372.6 20.9 255 209-482 172-430 (434)
4 4b4t_I 26S protease regulatory 100.0 1.2E-43 4.1E-48 368.2 20.2 253 209-480 173-429 (437)
5 4b4t_L 26S protease subunit RP 100.0 2.5E-43 8.5E-48 369.8 20.9 261 208-489 171-435 (437)
6 3cf2_A TER ATPase, transitiona 100.0 3E-44 1E-48 400.7 11.2 285 210-495 469-765 (806)
7 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.1E-41 7.2E-46 344.4 28.8 283 210-495 4-321 (322)
8 4b4t_K 26S protease regulatory 100.0 2.5E-41 8.5E-46 354.0 25.7 252 209-479 163-420 (428)
9 3eie_A Vacuolar protein sortin 100.0 2.7E-41 9.3E-46 343.2 24.9 286 207-495 7-320 (322)
10 2qp9_X Vacuolar protein sortin 100.0 5.6E-40 1.9E-44 338.2 25.2 290 204-495 37-353 (355)
11 2zan_A Vacuolar protein sortin 100.0 2.7E-39 9.1E-44 342.7 21.7 291 202-495 118-443 (444)
12 3cf0_A Transitional endoplasmi 100.0 3.8E-38 1.3E-42 317.2 23.9 286 206-492 3-300 (301)
13 3cf2_A TER ATPase, transitiona 100.0 7.3E-39 2.5E-43 357.4 17.7 265 211-479 197-464 (806)
14 3d8b_A Fidgetin-like protein 1 100.0 5.8E-37 2E-41 315.8 23.9 285 203-495 69-356 (357)
15 3b9p_A CG5977-PA, isoform A; A 100.0 5.7E-37 2E-41 306.6 23.1 287 202-496 5-295 (297)
16 3vfd_A Spastin; ATPase, microt 100.0 8.4E-36 2.9E-40 310.4 24.3 285 204-496 101-388 (389)
17 2x8a_A Nuclear valosin-contain 100.0 1.1E-34 3.9E-39 288.3 22.3 261 211-481 3-271 (274)
18 3hu3_A Transitional endoplasmi 100.0 3.1E-34 1.1E-38 306.6 16.2 281 213-497 199-485 (489)
19 3h4m_A Proteasome-activating n 100.0 7.1E-33 2.4E-37 275.1 23.8 269 210-497 9-284 (285)
20 1lv7_A FTSH; alpha/beta domain 100.0 7.7E-31 2.6E-35 257.1 25.3 247 210-476 4-254 (257)
21 2ce7_A Cell division protein F 100.0 6.7E-31 2.3E-35 279.1 25.9 260 212-491 10-280 (476)
22 1ypw_A Transitional endoplasmi 100.0 4.9E-34 1.7E-38 322.2 -3.1 285 210-495 469-765 (806)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 8.6E-31 2.9E-35 256.2 16.1 247 213-479 1-254 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 2.9E-29 9.8E-34 268.1 22.1 261 212-492 25-296 (499)
25 1ixz_A ATP-dependent metallopr 100.0 1.9E-28 6.3E-33 239.7 23.0 243 209-471 7-253 (254)
26 2r62_A Cell division protease 100.0 1.6E-31 5.6E-36 263.1 -0.3 253 211-482 4-261 (268)
27 1iy2_A ATP-dependent metallopr 100.0 4E-27 1.4E-31 233.6 25.6 243 210-472 32-278 (278)
28 1ypw_A Transitional endoplasmi 99.9 9.1E-27 3.1E-31 262.9 18.6 265 211-479 197-464 (806)
29 3t15_A Ribulose bisphosphate c 99.9 5.5E-25 1.9E-29 220.4 12.6 174 248-427 33-222 (293)
30 3syl_A Protein CBBX; photosynt 99.9 4.6E-21 1.6E-25 191.9 14.9 213 219-442 32-268 (309)
31 2c9o_A RUVB-like 1; hexameric 99.8 6.4E-23 2.2E-27 217.7 -4.3 203 212-431 31-262 (456)
32 1ofh_A ATP-dependent HSL prote 99.8 3.3E-20 1.1E-24 185.0 14.5 251 218-475 15-300 (310)
33 3uk6_A RUVB-like 2; hexameric 99.8 1.4E-19 4.9E-24 185.5 19.0 222 212-475 38-331 (368)
34 3pfi_A Holliday junction ATP-d 99.8 1.6E-19 5.4E-24 183.3 18.6 196 210-434 21-232 (338)
35 1d2n_A N-ethylmaleimide-sensit 99.8 2.8E-19 9.4E-24 176.4 13.3 233 217-477 32-267 (272)
36 3m6a_A ATP-dependent protease 99.8 2.1E-19 7.1E-24 194.7 10.3 231 217-476 80-343 (543)
37 1hqc_A RUVB; extended AAA-ATPa 99.8 6.9E-18 2.3E-22 169.7 19.2 194 212-433 6-215 (324)
38 3hws_A ATP-dependent CLP prote 99.8 2E-18 6.9E-23 177.4 14.7 179 219-397 16-267 (363)
39 3pvs_A Replication-associated 99.8 8.4E-18 2.9E-22 177.8 19.6 220 212-478 20-248 (447)
40 2chg_A Replication factor C sm 99.8 8.7E-17 3E-21 150.9 21.5 202 212-472 11-224 (226)
41 2z4s_A Chromosomal replication 99.7 5.2E-17 1.8E-21 171.5 19.5 223 211-476 98-334 (440)
42 3u61_B DNA polymerase accessor 99.7 1.4E-17 4.9E-22 167.9 14.5 155 211-399 19-178 (324)
43 1l8q_A Chromosomal replication 99.7 6.9E-17 2.4E-21 163.1 17.6 198 212-435 5-214 (324)
44 1g41_A Heat shock protein HSLU 99.7 2E-16 6.8E-21 166.0 20.2 177 218-396 15-346 (444)
45 2v1u_A Cell division control p 99.7 4E-16 1.4E-20 159.7 22.1 226 213-474 14-276 (387)
46 1jbk_A CLPB protein; beta barr 99.7 1.2E-17 4.1E-22 153.2 9.6 160 213-395 17-194 (195)
47 3bos_A Putative DNA replicatio 99.7 2.5E-16 8.6E-21 150.4 19.2 207 213-472 23-241 (242)
48 4fcw_A Chaperone protein CLPB; 99.7 6E-17 2E-21 161.9 14.7 207 218-440 17-282 (311)
49 1um8_A ATP-dependent CLP prote 99.7 9.3E-17 3.2E-21 165.7 16.5 179 219-397 22-284 (376)
50 1njg_A DNA polymerase III subu 99.7 2.6E-16 9E-21 149.3 18.0 204 212-472 17-249 (250)
51 2bjv_A PSP operon transcriptio 99.7 2E-17 7E-22 162.2 8.2 198 215-450 3-239 (265)
52 2qby_B CDC6 homolog 3, cell di 99.7 6.4E-16 2.2E-20 158.7 19.6 214 217-475 19-271 (384)
53 1ojl_A Transcriptional regulat 99.7 1.9E-17 6.4E-22 166.6 7.8 208 218-469 2-247 (304)
54 3pxg_A Negative regulator of g 99.7 2.1E-16 7.2E-21 168.1 14.3 190 206-433 168-382 (468)
55 1g8p_A Magnesium-chelatase 38 99.7 7.6E-16 2.6E-20 156.3 16.0 234 211-474 17-322 (350)
56 1sxj_D Activator 1 41 kDa subu 99.7 1.8E-15 6.2E-20 153.5 18.8 212 211-475 30-264 (353)
57 2chq_A Replication factor C sm 99.7 4.9E-16 1.7E-20 155.1 14.3 164 210-404 9-179 (319)
58 2r44_A Uncharacterized protein 99.7 1.4E-15 4.8E-20 153.9 17.5 156 215-402 24-201 (331)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 6.8E-16 2.3E-20 173.4 16.1 226 214-475 182-434 (758)
60 1sxj_A Activator 1 95 kDa subu 99.7 5.7E-16 1.9E-20 166.7 14.8 194 211-419 32-243 (516)
61 3pxi_A Negative regulator of g 99.7 7.4E-16 2.5E-20 173.2 15.7 202 218-439 491-727 (758)
62 2qby_A CDC6 homolog 1, cell di 99.6 4.4E-15 1.5E-19 151.7 19.6 224 213-474 15-272 (386)
63 2p65_A Hypothetical protein PF 99.6 5.4E-16 1.9E-20 141.9 11.3 152 214-387 18-187 (187)
64 3pxi_A Negative regulator of g 99.6 8.8E-16 3E-20 172.5 14.5 191 206-434 168-383 (758)
65 1fnn_A CDC6P, cell division co 99.6 2E-14 6.8E-19 147.5 22.9 226 213-477 12-277 (389)
66 1r6b_X CLPA protein; AAA+, N-t 99.6 1.5E-15 5E-20 170.7 15.5 203 219-439 459-718 (758)
67 1iqp_A RFCS; clamp loader, ext 99.6 3.9E-15 1.3E-19 149.1 16.4 179 210-419 17-203 (327)
68 1sxj_B Activator 1 37 kDa subu 99.6 6.4E-15 2.2E-19 147.3 17.2 174 212-420 15-201 (323)
69 3te6_A Regulatory protein SIR3 99.6 1.7E-15 5.9E-20 152.8 12.5 160 220-402 22-214 (318)
70 1jr3_A DNA polymerase III subu 99.6 6.7E-15 2.3E-19 150.5 17.1 187 211-432 9-224 (373)
71 1in4_A RUVB, holliday junction 99.6 1.2E-13 4.1E-18 140.4 25.7 217 212-475 19-251 (334)
72 1qvr_A CLPB protein; coiled co 99.6 9E-16 3.1E-20 174.6 10.9 200 212-434 164-390 (854)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.1E-14 3.7E-19 155.6 15.8 154 219-400 23-197 (500)
74 1qvr_A CLPB protein; coiled co 99.6 1.5E-14 5E-19 164.7 15.1 206 217-440 557-823 (854)
75 3n70_A Transport activator; si 99.6 7.7E-15 2.6E-19 131.1 9.0 131 219-386 2-142 (145)
76 1sxj_C Activator 1 40 kDa subu 99.5 4E-13 1.4E-17 136.5 22.1 213 211-476 18-241 (340)
77 1sxj_E Activator 1 40 kDa subu 99.5 5.7E-14 2E-18 142.9 15.1 179 209-419 5-228 (354)
78 3co5_A Putative two-component 99.5 4.2E-15 1.4E-19 132.6 4.5 131 219-386 5-140 (143)
79 3f9v_A Minichromosome maintena 99.5 1.4E-14 4.7E-19 158.4 6.3 165 218-402 295-493 (595)
80 1ny5_A Transcriptional regulat 99.5 2.1E-14 7.3E-19 149.0 5.6 211 217-472 136-385 (387)
81 1a5t_A Delta prime, HOLB; zinc 99.4 8.7E-12 3E-16 126.6 19.1 163 223-420 7-197 (334)
82 1w5s_A Origin recognition comp 99.4 2.8E-11 9.7E-16 125.0 19.9 210 213-436 17-273 (412)
83 3k1j_A LON protease, ATP-depen 99.3 4E-12 1.4E-16 139.2 13.0 52 211-276 34-85 (604)
84 3dzd_A Transcriptional regulat 99.3 4.4E-13 1.5E-17 138.2 4.3 197 218-453 129-363 (368)
85 2gno_A DNA polymerase III, gam 99.3 3.9E-11 1.3E-15 120.5 15.4 142 222-399 1-152 (305)
86 3cmw_A Protein RECA, recombina 99.2 1.5E-11 5E-16 146.3 10.1 153 212-366 1014-1218(1706)
87 3vlf_B 26S protease regulatory 99.1 1.1E-10 3.7E-15 95.5 7.7 85 387-489 2-88 (88)
88 4akg_A Glutathione S-transfera 99.1 4.1E-10 1.4E-14 139.3 15.5 140 250-401 1266-1433(2695)
89 3ec2_A DNA replication protein 99.1 1.6E-10 5.5E-15 106.2 7.2 100 212-322 4-112 (180)
90 2kjq_A DNAA-related protein; s 99.0 5.7E-10 1.9E-14 100.1 9.5 107 250-385 35-147 (149)
91 2krk_A 26S protease regulatory 99.0 4.3E-10 1.5E-14 91.4 6.2 78 382-477 7-84 (86)
92 3aji_B S6C, proteasome (prosom 99.0 3.6E-10 1.2E-14 91.2 5.7 81 387-485 2-82 (83)
93 3kw6_A 26S protease regulatory 99.0 9.1E-10 3.1E-14 87.7 6.9 75 384-476 1-75 (78)
94 2fna_A Conserved hypothetical 98.8 3.7E-08 1.3E-12 99.0 14.9 187 213-430 8-251 (357)
95 2w58_A DNAI, primosome compone 98.8 4.4E-09 1.5E-13 98.1 7.3 102 213-324 20-129 (202)
96 2qen_A Walker-type ATPase; unk 98.8 1.7E-07 5.8E-12 94.0 19.0 191 213-430 7-247 (350)
97 3f8t_A Predicted ATPase involv 98.8 1.3E-08 4.5E-13 106.6 10.2 146 220-389 215-384 (506)
98 2r2a_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 95.8 6.9 127 253-390 7-157 (199)
99 2qgz_A Helicase loader, putati 98.6 1.1E-08 3.6E-13 102.8 3.8 100 214-324 120-228 (308)
100 2vhj_A Ntpase P4, P4; non- hyd 98.6 2.7E-08 9.2E-13 99.9 5.6 77 248-326 120-198 (331)
101 2dzn_B 26S protease regulatory 98.5 3.4E-08 1.2E-12 79.3 2.7 79 389-485 1-81 (82)
102 4akg_A Glutathione S-transfera 98.5 5.3E-07 1.8E-11 111.9 14.4 131 252-396 646-790 (2695)
103 1tue_A Replication protein E1; 98.5 2.4E-07 8.2E-12 87.1 8.3 111 249-386 56-179 (212)
104 3vkg_A Dynein heavy chain, cyt 98.3 9E-07 3.1E-11 110.7 10.5 138 250-399 1303-1469(3245)
105 3cmu_A Protein RECA, recombina 98.2 3E-06 1E-10 102.3 10.5 117 248-366 1424-1563(2050)
106 1ye8_A Protein THEP1, hypothet 98.2 1.7E-05 5.8E-10 72.9 12.7 27 253-279 2-28 (178)
107 1u0j_A DNA replication protein 98.2 4.3E-06 1.5E-10 81.7 8.6 29 249-277 102-130 (267)
108 1jr3_D DNA polymerase III, del 98.1 3.5E-05 1.2E-09 77.7 15.4 143 251-418 18-175 (343)
109 3vkg_A Dynein heavy chain, cyt 98.0 2.7E-05 9.3E-10 97.6 14.4 136 252-397 605-751 (3245)
110 2c9o_A RUVB-like 1; hexameric 98.0 1.8E-05 6.1E-10 83.4 9.7 129 311-475 296-438 (456)
111 1z6t_A APAF-1, apoptotic prote 98.0 0.00014 4.7E-09 78.7 16.9 174 215-428 121-327 (591)
112 3sfz_A APAF-1, apoptotic pepti 97.8 0.00045 1.5E-08 80.5 18.4 178 212-427 118-326 (1249)
113 1svm_A Large T antigen; AAA+ f 97.7 1.4E-05 4.6E-10 82.3 3.5 113 248-382 166-281 (377)
114 2cvh_A DNA repair and recombin 97.7 0.00037 1.3E-08 64.8 12.8 40 247-286 16-55 (220)
115 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00027 9.2E-09 66.1 11.6 37 248-284 20-59 (235)
116 3hr8_A Protein RECA; alpha and 97.6 0.00016 5.4E-09 73.7 10.2 78 247-324 57-153 (356)
117 1xp8_A RECA protein, recombina 97.6 0.00021 7.2E-09 73.1 11.0 78 247-324 70-166 (366)
118 1n0w_A DNA repair protein RAD5 97.6 0.00014 4.6E-09 68.9 8.8 78 247-324 20-133 (243)
119 2z43_A DNA repair and recombin 97.6 0.00019 6.3E-09 72.1 9.7 79 247-325 103-218 (324)
120 2zr9_A Protein RECA, recombina 97.6 0.00017 5.8E-09 73.4 8.9 78 247-324 57-153 (349)
121 1v5w_A DMC1, meiotic recombina 97.6 0.00037 1.3E-08 70.5 11.3 79 247-325 118-234 (343)
122 4a74_A DNA repair and recombin 97.5 0.00036 1.2E-08 65.4 9.6 29 247-275 21-49 (231)
123 1qhx_A CPT, protein (chloramph 97.5 8.7E-05 3E-09 67.0 4.8 36 252-287 4-39 (178)
124 2a5y_B CED-4; apoptosis; HET: 97.4 0.0027 9.1E-08 68.3 17.0 166 221-421 131-330 (549)
125 2b8t_A Thymidine kinase; deoxy 97.4 0.00038 1.3E-08 66.2 9.2 71 251-322 12-101 (223)
126 3cmu_A Protein RECA, recombina 97.4 0.00031 1.1E-08 85.2 10.2 79 247-325 1077-1174(2050)
127 1u94_A RECA protein, recombina 97.4 0.00033 1.1E-08 71.4 9.1 78 247-324 59-155 (356)
128 3upu_A ATP-dependent DNA helic 97.4 0.0013 4.3E-08 69.2 13.1 52 211-275 17-69 (459)
129 2iut_A DNA translocase FTSK; n 97.4 0.0032 1.1E-07 67.7 16.2 75 312-397 345-421 (574)
130 3trf_A Shikimate kinase, SK; a 97.4 0.00011 3.6E-09 66.9 4.1 32 251-282 5-36 (185)
131 2ehv_A Hypothetical protein PH 97.4 0.0018 6.3E-08 61.2 12.9 26 247-272 26-51 (251)
132 2orw_A Thymidine kinase; TMTK, 97.3 0.0004 1.4E-08 63.9 7.2 32 252-283 4-38 (184)
133 3dm5_A SRP54, signal recogniti 97.3 0.0028 9.6E-08 66.2 14.3 99 224-322 73-194 (443)
134 3vaa_A Shikimate kinase, SK; s 97.3 0.00016 5.4E-09 67.0 4.2 34 249-282 23-56 (199)
135 3lda_A DNA repair protein RAD5 97.2 0.00064 2.2E-08 70.3 8.8 80 246-325 173-288 (400)
136 1pzn_A RAD51, DNA repair and r 97.2 0.0011 3.7E-08 67.3 10.4 40 247-286 127-175 (349)
137 3io5_A Recombination and repai 97.2 0.0012 4.1E-08 66.0 10.2 77 247-324 25-125 (333)
138 2dr3_A UPF0273 protein PH0284; 97.2 0.0025 8.7E-08 60.1 12.2 38 247-284 19-59 (247)
139 2i1q_A DNA repair and recombin 97.2 0.00075 2.6E-08 67.4 8.9 79 247-325 94-219 (322)
140 3iij_A Coilin-interacting nucl 97.2 0.00027 9.3E-09 64.0 4.3 32 251-282 11-42 (180)
141 2p5t_B PEZT; postsegregational 97.1 0.0015 5E-08 63.0 9.6 39 249-287 30-68 (253)
142 3kb2_A SPBC2 prophage-derived 97.1 0.0003 1E-08 62.7 4.3 31 253-283 3-33 (173)
143 1via_A Shikimate kinase; struc 97.1 0.00035 1.2E-08 63.0 4.5 29 253-281 6-34 (175)
144 2r8r_A Sensor protein; KDPD, P 97.1 0.0086 3E-07 56.9 14.1 33 252-284 7-42 (228)
145 2rhm_A Putative kinase; P-loop 97.1 0.00044 1.5E-08 62.9 5.1 32 250-281 4-35 (193)
146 1zuh_A Shikimate kinase; alpha 97.1 0.00031 1E-08 62.9 3.9 31 252-282 8-38 (168)
147 2iyv_A Shikimate kinase, SK; t 97.1 0.00029 9.8E-09 64.0 3.7 30 253-282 4-33 (184)
148 3cmw_A Protein RECA, recombina 97.1 0.00092 3.1E-08 80.1 8.7 78 247-324 728-824 (1706)
149 1y63_A LMAJ004144AAA protein; 97.1 0.00034 1.2E-08 63.9 3.9 32 251-282 10-42 (184)
150 1kag_A SKI, shikimate kinase I 97.0 0.00049 1.7E-08 61.6 4.9 29 252-280 5-33 (173)
151 3crm_A TRNA delta(2)-isopenten 97.0 0.00047 1.6E-08 69.2 4.7 35 252-286 6-40 (323)
152 1gvn_B Zeta; postsegregational 97.0 0.00093 3.2E-08 65.9 6.8 39 250-288 32-70 (287)
153 1tev_A UMP-CMP kinase; ploop, 97.0 0.00047 1.6E-08 62.7 4.1 31 251-281 3-33 (196)
154 1zp6_A Hypothetical protein AT 97.0 0.00046 1.6E-08 62.9 4.0 39 249-287 7-45 (191)
155 2c95_A Adenylate kinase 1; tra 97.0 0.0005 1.7E-08 62.8 4.2 32 251-282 9-40 (196)
156 2cdn_A Adenylate kinase; phosp 97.0 0.00051 1.8E-08 63.4 4.3 32 251-282 20-51 (201)
157 2ius_A DNA translocase FTSK; n 97.0 0.013 4.4E-07 62.4 15.6 76 311-397 297-375 (512)
158 3lw7_A Adenylate kinase relate 96.9 0.00047 1.6E-08 61.2 3.7 29 253-282 3-31 (179)
159 2ze6_A Isopentenyl transferase 96.9 0.00055 1.9E-08 66.2 4.3 32 253-284 3-34 (253)
160 3cm0_A Adenylate kinase; ATP-b 96.9 0.00064 2.2E-08 61.6 4.4 30 252-281 5-34 (186)
161 1e6c_A Shikimate kinase; phosp 96.9 0.0007 2.4E-08 60.5 4.6 30 252-281 3-32 (173)
162 1aky_A Adenylate kinase; ATP:A 96.9 0.00077 2.6E-08 63.2 5.1 32 251-282 4-35 (220)
163 2zts_A Putative uncharacterize 96.9 0.0061 2.1E-07 57.4 11.5 38 247-284 26-67 (251)
164 3kl4_A SRP54, signal recogniti 96.9 0.0059 2E-07 63.7 12.2 73 250-322 96-191 (433)
165 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0018 6.2E-08 62.6 7.8 38 251-288 4-44 (260)
166 1g5t_A COB(I)alamin adenosyltr 96.9 0.0082 2.8E-07 55.8 11.8 116 252-383 29-177 (196)
167 1vma_A Cell division protein F 96.9 0.0034 1.1E-07 62.5 9.8 73 249-321 102-197 (306)
168 2fz4_A DNA repair protein RAD2 96.8 0.0044 1.5E-07 59.1 10.0 34 252-285 109-142 (237)
169 2vli_A Antibiotic resistance p 96.8 0.00059 2E-08 61.6 3.6 29 252-280 6-34 (183)
170 1knq_A Gluconate kinase; ALFA/ 96.8 0.001 3.6E-08 59.7 5.2 31 251-281 8-38 (175)
171 3e1s_A Exodeoxyribonuclease V, 96.8 0.00077 2.6E-08 73.0 4.9 33 252-284 205-240 (574)
172 3t61_A Gluconokinase; PSI-biol 96.8 0.00096 3.3E-08 61.6 4.9 31 251-281 18-48 (202)
173 2bwj_A Adenylate kinase 5; pho 96.8 0.00072 2.5E-08 61.8 3.9 31 252-282 13-43 (199)
174 3dl0_A Adenylate kinase; phosp 96.8 0.00071 2.4E-08 63.1 3.9 30 253-282 2-31 (216)
175 1ly1_A Polynucleotide kinase; 96.8 0.00073 2.5E-08 60.7 3.7 28 252-279 3-31 (181)
176 2pt5_A Shikimate kinase, SK; a 96.8 0.00078 2.7E-08 60.0 3.9 30 253-282 2-31 (168)
177 1kht_A Adenylate kinase; phosp 96.8 0.00085 2.9E-08 60.8 4.2 25 252-276 4-28 (192)
178 3tlx_A Adenylate kinase 2; str 96.8 0.00085 2.9E-08 64.3 4.4 33 250-282 28-60 (243)
179 1zd8_A GTP:AMP phosphotransfer 96.8 0.00072 2.4E-08 63.8 3.8 32 251-282 7-38 (227)
180 1ukz_A Uridylate kinase; trans 96.8 0.00088 3E-08 61.8 4.3 33 251-283 15-47 (203)
181 1qf9_A UMP/CMP kinase, protein 96.8 0.0012 3.9E-08 59.9 5.0 31 252-282 7-37 (194)
182 3fb4_A Adenylate kinase; psych 96.8 0.00073 2.5E-08 63.0 3.7 30 253-282 2-31 (216)
183 1ak2_A Adenylate kinase isoenz 96.8 0.0012 4.1E-08 62.6 5.2 32 251-282 16-47 (233)
184 4eun_A Thermoresistant glucoki 96.7 0.0013 4.3E-08 60.9 5.1 31 250-280 28-58 (200)
185 3jvv_A Twitching mobility prot 96.7 0.0021 7.1E-08 65.4 7.0 70 251-320 123-206 (356)
186 3foz_A TRNA delta(2)-isopenten 96.7 0.0011 3.6E-08 66.2 4.3 37 251-287 10-46 (316)
187 3umf_A Adenylate kinase; rossm 96.7 0.0015 5E-08 61.9 5.1 39 248-288 26-64 (217)
188 4gp7_A Metallophosphoesterase; 96.7 0.0058 2E-07 55.0 8.8 22 249-270 7-28 (171)
189 1zak_A Adenylate kinase; ATP:A 96.7 0.0011 3.6E-08 62.3 4.0 31 251-281 5-35 (222)
190 1nlf_A Regulatory protein REPA 96.7 0.012 4E-07 57.3 11.6 28 248-275 27-54 (279)
191 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00094 3.2E-08 67.8 3.7 53 221-281 2-54 (359)
192 3be4_A Adenylate kinase; malar 96.6 0.0013 4.5E-08 61.6 4.3 31 252-282 6-36 (217)
193 2pez_A Bifunctional 3'-phospho 96.6 0.002 6.7E-08 58.2 5.3 37 250-286 4-43 (179)
194 2r6a_A DNAB helicase, replicat 96.6 0.013 4.3E-07 61.5 12.0 38 247-284 199-240 (454)
195 2eyu_A Twitching motility prot 96.6 0.0033 1.1E-07 61.1 6.9 71 249-320 23-108 (261)
196 3sr0_A Adenylate kinase; phosp 96.6 0.0017 5.8E-08 60.9 4.6 34 253-288 2-35 (206)
197 1vt4_I APAF-1 related killer D 96.6 0.035 1.2E-06 63.7 16.0 43 221-274 131-173 (1221)
198 3uie_A Adenylyl-sulfate kinase 96.5 0.0019 6.7E-08 59.6 4.9 38 249-286 23-63 (200)
199 2bbw_A Adenylate kinase 4, AK4 96.5 0.0017 5.7E-08 62.1 4.6 31 250-280 26-56 (246)
200 2pbr_A DTMP kinase, thymidylat 96.5 0.0021 7.1E-08 58.4 4.9 31 253-283 2-35 (195)
201 1e4v_A Adenylate kinase; trans 96.5 0.0018 6.2E-08 60.4 4.5 30 253-282 2-31 (214)
202 1cke_A CK, MSSA, protein (cyti 96.5 0.0024 8.1E-08 59.8 5.2 30 252-281 6-35 (227)
203 2jaq_A Deoxyguanosine kinase; 96.5 0.0018 6.3E-08 59.2 4.4 29 253-281 2-30 (205)
204 2q6t_A DNAB replication FORK h 96.5 0.016 5.4E-07 60.5 12.0 38 247-284 196-237 (444)
205 2v54_A DTMP kinase, thymidylat 96.4 0.0022 7.5E-08 58.9 4.6 33 251-283 4-37 (204)
206 2xb4_A Adenylate kinase; ATP-b 96.4 0.0023 7.7E-08 60.4 4.6 30 253-282 2-31 (223)
207 2z0h_A DTMP kinase, thymidylat 96.4 0.0027 9.1E-08 57.9 4.9 30 254-283 3-35 (197)
208 1nks_A Adenylate kinase; therm 96.4 0.0014 4.8E-08 59.4 2.9 32 253-284 3-37 (194)
209 2px0_A Flagellar biosynthesis 96.3 0.04 1.4E-06 54.4 13.3 59 225-284 80-142 (296)
210 2if2_A Dephospho-COA kinase; a 96.3 0.0019 6.6E-08 59.5 3.4 30 253-283 3-32 (204)
211 3ake_A Cytidylate kinase; CMP 96.3 0.0029 1E-07 58.1 4.5 31 253-283 4-34 (208)
212 3r20_A Cytidylate kinase; stru 96.3 0.0034 1.2E-07 60.1 4.9 31 251-281 9-39 (233)
213 3nwj_A ATSK2; P loop, shikimat 96.3 0.0033 1.1E-07 60.8 4.8 32 251-282 48-79 (250)
214 2plr_A DTMP kinase, probable t 96.2 0.003 1E-07 58.1 4.2 27 252-278 5-31 (213)
215 2ewv_A Twitching motility prot 96.2 0.0052 1.8E-07 62.8 6.4 72 249-320 134-219 (372)
216 2grj_A Dephospho-COA kinase; T 96.2 0.003 1E-07 58.5 3.8 31 252-282 13-43 (192)
217 3exa_A TRNA delta(2)-isopenten 96.2 0.0017 5.7E-08 64.9 2.2 36 252-287 4-39 (322)
218 1uf9_A TT1252 protein; P-loop, 96.2 0.0039 1.3E-07 57.0 4.5 32 250-282 7-38 (203)
219 3a8t_A Adenylate isopentenyltr 96.1 0.0028 9.6E-08 63.9 3.7 34 252-285 41-74 (339)
220 2wwf_A Thymidilate kinase, put 96.1 0.0015 5.2E-08 60.3 1.6 28 251-278 10-37 (212)
221 4e22_A Cytidylate kinase; P-lo 96.1 0.0049 1.7E-07 59.3 5.2 31 250-280 26-56 (252)
222 1jjv_A Dephospho-COA kinase; P 96.1 0.0034 1.2E-07 58.0 3.9 28 253-281 4-31 (206)
223 1t6n_A Probable ATP-dependent 96.1 0.054 1.8E-06 50.1 12.2 61 215-275 14-75 (220)
224 2qor_A Guanylate kinase; phosp 96.1 0.0035 1.2E-07 58.0 3.9 29 248-276 9-37 (204)
225 2yvu_A Probable adenylyl-sulfa 96.1 0.0052 1.8E-07 55.7 5.0 37 249-285 11-50 (186)
226 3bh0_A DNAB-like replicative h 96.1 0.05 1.7E-06 54.1 12.5 38 247-284 64-104 (315)
227 1w4r_A Thymidine kinase; type 96.1 0.015 5.2E-07 53.9 8.0 35 251-285 20-57 (195)
228 1uj2_A Uridine-cytidine kinase 96.1 0.0057 2E-07 58.6 5.4 38 251-288 22-67 (252)
229 1nn5_A Similar to deoxythymidy 96.0 0.0018 6.2E-08 59.9 1.7 26 251-276 9-34 (215)
230 1q3t_A Cytidylate kinase; nucl 96.0 0.0058 2E-07 57.9 5.3 34 248-281 13-46 (236)
231 3b6e_A Interferon-induced heli 96.0 0.032 1.1E-06 51.1 10.0 24 252-275 49-72 (216)
232 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0045 1.5E-07 62.2 4.2 71 251-321 171-251 (330)
233 3thx_B DNA mismatch repair pro 95.9 0.024 8.1E-07 64.5 10.4 25 249-273 671-695 (918)
234 2qt1_A Nicotinamide riboside k 95.9 0.0039 1.3E-07 57.7 3.3 34 248-281 18-52 (207)
235 1vht_A Dephospho-COA kinase; s 95.9 0.0071 2.4E-07 56.3 5.1 30 252-282 5-34 (218)
236 3eph_A TRNA isopentenyltransfe 95.9 0.0016 5.4E-08 67.2 0.4 33 252-284 3-35 (409)
237 2h92_A Cytidylate kinase; ross 95.8 0.007 2.4E-07 56.3 4.7 31 252-282 4-34 (219)
238 2j41_A Guanylate kinase; GMP, 95.8 0.0051 1.7E-07 56.4 3.6 26 250-275 5-30 (207)
239 1q57_A DNA primase/helicase; d 95.7 0.059 2E-06 57.0 12.1 38 247-284 238-279 (503)
240 1kgd_A CASK, peripheral plasma 95.7 0.0064 2.2E-07 55.1 3.9 26 251-276 5-30 (180)
241 1m7g_A Adenylylsulfate kinase; 95.7 0.008 2.7E-07 55.8 4.7 39 249-287 23-65 (211)
242 3tau_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 56.8 3.7 27 250-276 7-33 (208)
243 4a1f_A DNAB helicase, replicat 95.7 0.043 1.5E-06 55.3 10.1 38 247-284 42-82 (338)
244 3zvl_A Bifunctional polynucleo 95.7 0.014 4.6E-07 60.6 6.5 31 250-280 257-287 (416)
245 3d3q_A TRNA delta(2)-isopenten 95.6 0.0066 2.3E-07 61.2 4.0 33 252-284 8-40 (340)
246 2bdt_A BH3686; alpha-beta prot 95.6 0.0089 3E-07 54.3 4.5 26 252-277 3-28 (189)
247 1qde_A EIF4A, translation init 95.6 0.059 2E-06 49.9 10.3 61 214-274 13-75 (224)
248 1ltq_A Polynucleotide kinase; 95.6 0.0073 2.5E-07 59.2 4.1 29 252-280 3-32 (301)
249 2gxq_A Heat resistant RNA depe 95.6 0.032 1.1E-06 51.0 8.1 23 252-274 39-62 (207)
250 3tr0_A Guanylate kinase, GMP k 95.6 0.0083 2.8E-07 54.9 4.1 27 250-276 6-32 (205)
251 3thx_A DNA mismatch repair pro 95.6 0.047 1.6E-06 62.2 11.0 23 251-273 662-684 (934)
252 2qmh_A HPR kinase/phosphorylas 95.6 0.0067 2.3E-07 56.5 3.3 34 250-284 33-66 (205)
253 2f6r_A COA synthase, bifunctio 95.6 0.0098 3.4E-07 58.2 4.7 31 251-282 75-105 (281)
254 2j37_W Signal recognition part 95.5 0.1 3.5E-06 55.4 12.8 74 249-322 99-195 (504)
255 1xx6_A Thymidine kinase; NESG, 95.5 0.024 8.3E-07 52.3 7.0 33 251-283 8-43 (191)
256 3llm_A ATP-dependent RNA helic 95.5 0.087 3E-06 49.6 11.1 22 252-273 77-98 (235)
257 2dl1_A Spartin; SPG20, MIT, st 95.5 0.00064 2.2E-08 57.2 -3.4 59 14-72 12-74 (116)
258 3fdi_A Uncharacterized protein 95.5 0.0094 3.2E-07 55.4 4.1 29 253-281 8-36 (201)
259 3bgw_A DNAB-like replicative h 95.5 0.089 3E-06 54.9 12.0 38 247-284 193-233 (444)
260 2v3c_C SRP54, signal recogniti 95.5 0.041 1.4E-06 57.3 9.3 36 250-285 98-136 (432)
261 1p9r_A General secretion pathw 95.4 0.05 1.7E-06 56.4 9.9 26 251-276 167-192 (418)
262 4b3f_X DNA-binding protein smu 95.4 0.04 1.4E-06 60.3 9.6 49 223-285 191-242 (646)
263 1ex7_A Guanylate kinase; subst 95.4 0.01 3.5E-07 54.6 4.2 28 252-279 2-29 (186)
264 3asz_A Uridine kinase; cytidin 95.4 0.0099 3.4E-07 54.9 4.0 27 250-276 5-31 (211)
265 2yhs_A FTSY, cell division pro 95.4 0.059 2E-06 56.9 10.3 28 248-275 290-317 (503)
266 3c8u_A Fructokinase; YP_612366 95.4 0.0095 3.2E-07 55.3 3.8 28 249-276 20-47 (208)
267 3e70_C DPA, signal recognition 95.4 0.072 2.5E-06 53.4 10.5 27 249-275 127-153 (328)
268 1lvg_A Guanylate kinase, GMP k 95.3 0.0089 3.1E-07 55.2 3.4 27 250-276 3-29 (198)
269 2xau_A PRE-mRNA-splicing facto 95.3 0.046 1.6E-06 61.2 9.7 61 214-274 71-132 (773)
270 2axn_A 6-phosphofructo-2-kinas 95.3 0.034 1.2E-06 59.4 8.2 37 251-287 35-74 (520)
271 1rz3_A Hypothetical protein rb 95.3 0.02 7E-07 52.7 5.7 35 250-284 21-58 (201)
272 1tf7_A KAIC; homohexamer, hexa 95.2 0.049 1.7E-06 58.1 9.3 75 248-322 278-383 (525)
273 1j8m_F SRP54, signal recogniti 95.2 0.09 3.1E-06 51.9 10.5 72 251-322 98-192 (297)
274 1zu4_A FTSY; GTPase, signal re 95.2 0.091 3.1E-06 52.4 10.6 37 248-284 102-141 (320)
275 3a00_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 53.7 3.5 25 252-276 2-26 (186)
276 2oap_1 GSPE-2, type II secreti 95.0 0.016 5.5E-07 61.7 4.6 71 250-320 259-343 (511)
277 3ney_A 55 kDa erythrocyte memb 94.9 0.016 5.4E-07 53.9 3.9 27 250-276 18-44 (197)
278 3b9q_A Chloroplast SRP recepto 94.9 0.033 1.1E-06 55.1 6.2 52 224-275 70-124 (302)
279 1wb9_A DNA mismatch repair pro 94.9 0.11 3.9E-06 58.2 11.2 25 250-274 606-630 (800)
280 1htw_A HI0065; nucleotide-bind 94.8 0.021 7E-07 51.1 4.2 27 249-275 31-57 (158)
281 2j9r_A Thymidine kinase; TK1, 94.8 0.059 2E-06 50.7 7.4 33 252-284 29-64 (214)
282 1x6v_B Bifunctional 3'-phospho 94.8 0.024 8.4E-07 61.7 5.5 37 250-286 51-90 (630)
283 1z6g_A Guanylate kinase; struc 94.8 0.017 5.7E-07 54.2 3.7 28 248-275 20-47 (218)
284 1znw_A Guanylate kinase, GMP k 94.8 0.019 6.4E-07 53.2 4.0 28 249-276 18-45 (207)
285 1c9k_A COBU, adenosylcobinamid 94.7 0.017 6E-07 52.8 3.5 32 254-286 2-33 (180)
286 1vec_A ATP-dependent RNA helic 94.7 0.071 2.4E-06 48.6 7.7 19 252-270 41-59 (206)
287 3hdt_A Putative kinase; struct 94.7 0.021 7.1E-07 54.1 4.1 30 252-281 15-44 (223)
288 1s96_A Guanylate kinase, GMP k 94.7 0.02 7E-07 53.9 3.9 29 248-276 13-41 (219)
289 1ls1_A Signal recognition part 94.7 0.088 3E-06 51.8 8.7 73 250-322 97-192 (295)
290 2xxa_A Signal recognition part 94.7 0.087 3E-06 54.9 9.0 74 249-322 98-195 (433)
291 1gtv_A TMK, thymidylate kinase 94.6 0.0091 3.1E-07 55.1 1.3 24 253-276 2-25 (214)
292 4eaq_A DTMP kinase, thymidylat 94.6 0.026 9E-07 53.4 4.6 32 250-281 25-58 (229)
293 1tf7_A KAIC; homohexamer, hexa 94.6 0.077 2.6E-06 56.5 8.7 37 248-284 36-76 (525)
294 2v9p_A Replication protein E1; 94.5 0.024 8.1E-07 56.4 4.1 32 248-279 123-154 (305)
295 2jeo_A Uridine-cytidine kinase 94.5 0.026 8.7E-07 53.8 4.3 30 249-278 23-52 (245)
296 1cr0_A DNA primase/helicase; R 94.5 0.037 1.3E-06 54.1 5.4 36 248-283 32-71 (296)
297 2og2_A Putative signal recogni 94.5 0.047 1.6E-06 55.4 6.3 52 224-275 127-181 (359)
298 1xti_A Probable ATP-dependent 94.5 0.33 1.1E-05 48.5 12.6 24 251-274 45-68 (391)
299 3gmt_A Adenylate kinase; ssgci 94.5 0.028 9.4E-07 53.5 4.2 30 253-282 10-39 (230)
300 2ffh_A Protein (FFH); SRP54, s 94.4 0.2 6.7E-06 52.0 11.0 73 250-322 97-192 (425)
301 3tqf_A HPR(Ser) kinase; transf 94.4 0.032 1.1E-06 50.8 4.3 29 250-279 15-43 (181)
302 1a7j_A Phosphoribulokinase; tr 94.3 0.022 7.7E-07 56.0 3.4 36 252-287 6-44 (290)
303 3iuy_A Probable ATP-dependent 94.1 0.14 4.9E-06 47.5 8.4 20 251-270 57-76 (228)
304 3dkp_A Probable ATP-dependent 94.1 0.19 6.4E-06 47.2 9.3 18 252-269 67-84 (245)
305 1bif_A 6-phosphofructo-2-kinas 94.0 0.1 3.5E-06 54.7 7.9 33 251-283 39-74 (469)
306 1g41_A Heat shock protein HSLU 93.9 0.0059 2E-07 63.9 -1.9 58 335-395 127-188 (444)
307 3lnc_A Guanylate kinase, GMP k 93.9 0.023 8E-07 53.4 2.4 28 249-276 25-53 (231)
308 2i3b_A HCR-ntpase, human cance 93.8 0.035 1.2E-06 51.0 3.5 23 253-275 3-25 (189)
309 1m8p_A Sulfate adenylyltransfe 93.8 0.044 1.5E-06 59.2 4.7 37 250-286 395-435 (573)
310 3p32_A Probable GTPase RV1496/ 93.8 0.13 4.6E-06 51.8 8.0 34 250-283 78-114 (355)
311 3aez_A Pantothenate kinase; tr 93.8 0.042 1.4E-06 54.6 4.2 28 248-275 87-114 (312)
312 1xjc_A MOBB protein homolog; s 93.7 0.069 2.4E-06 48.3 5.2 32 252-283 5-39 (169)
313 4f4c_A Multidrug resistance pr 93.7 0.18 6.3E-06 59.6 10.1 28 248-275 441-468 (1321)
314 3tbk_A RIG-I helicase domain; 93.7 0.34 1.2E-05 50.8 11.3 24 252-275 20-43 (555)
315 1odf_A YGR205W, hypothetical 3 93.7 0.044 1.5E-06 54.0 4.0 27 250-276 30-56 (290)
316 2va8_A SSO2462, SKI2-type heli 93.6 0.24 8.3E-06 54.5 10.5 71 214-284 7-83 (715)
317 2ocp_A DGK, deoxyguanosine kin 93.6 0.056 1.9E-06 51.1 4.5 25 252-276 3-27 (241)
318 2zj8_A DNA helicase, putative 93.5 0.22 7.4E-06 55.0 9.9 34 251-284 39-76 (720)
319 1rj9_A FTSY, signal recognitio 93.5 0.05 1.7E-06 53.9 4.1 26 250-275 101-126 (304)
320 1sq5_A Pantothenate kinase; P- 93.5 0.049 1.7E-06 53.9 4.0 27 250-276 79-105 (308)
321 1ewq_A DNA mismatch repair pro 93.4 0.28 9.7E-06 54.7 10.6 24 251-274 576-599 (765)
322 3tif_A Uncharacterized ABC tra 93.4 0.038 1.3E-06 52.6 3.0 28 248-275 28-55 (235)
323 2qm8_A GTPase/ATPase; G protei 93.4 0.21 7.1E-06 50.1 8.6 27 249-275 53-79 (337)
324 1s2m_A Putative ATP-dependent 93.3 0.24 8.1E-06 49.8 9.1 22 252-273 59-80 (400)
325 2gk6_A Regulator of nonsense t 93.3 0.074 2.5E-06 57.9 5.6 24 252-275 196-219 (624)
326 3pey_A ATP-dependent RNA helic 93.3 0.24 8E-06 49.4 8.9 22 251-272 44-65 (395)
327 3tqc_A Pantothenate kinase; bi 93.3 0.11 3.7E-06 52.0 6.2 27 250-276 91-117 (321)
328 2o8b_B DNA mismatch repair pro 93.3 0.34 1.2E-05 55.7 11.2 22 251-272 789-810 (1022)
329 2cbz_A Multidrug resistance-as 93.3 0.04 1.4E-06 52.4 3.0 28 248-275 28-55 (237)
330 1p5z_B DCK, deoxycytidine kina 93.3 0.027 9.1E-07 54.2 1.7 27 250-276 23-49 (263)
331 1sky_E F1-ATPase, F1-ATP synth 93.3 0.043 1.5E-06 57.6 3.4 24 252-275 152-175 (473)
332 3kta_A Chromosome segregation 93.2 0.052 1.8E-06 48.7 3.4 24 253-276 28-51 (182)
333 4edh_A DTMP kinase, thymidylat 93.1 0.098 3.4E-06 49.0 5.4 32 251-282 6-40 (213)
334 3oiy_A Reverse gyrase helicase 93.0 0.18 6.1E-06 51.4 7.5 23 252-274 37-59 (414)
335 2v6i_A RNA helicase; membrane, 93.0 0.17 5.8E-06 52.4 7.5 21 252-272 3-24 (431)
336 2pcj_A ABC transporter, lipopr 92.9 0.038 1.3E-06 52.1 2.2 28 248-275 27-54 (224)
337 1mv5_A LMRA, multidrug resista 92.9 0.048 1.6E-06 52.1 2.9 28 248-275 25-52 (243)
338 2ged_A SR-beta, signal recogni 92.9 0.12 3.9E-06 46.4 5.4 27 249-275 46-72 (193)
339 2j0s_A ATP-dependent RNA helic 92.9 0.17 5.7E-06 51.2 7.2 59 215-273 37-96 (410)
340 1np6_A Molybdopterin-guanine d 92.8 0.075 2.6E-06 48.2 3.9 24 252-275 7-30 (174)
341 1b0u_A Histidine permease; ABC 92.7 0.053 1.8E-06 52.5 3.0 29 248-276 29-57 (262)
342 2orv_A Thymidine kinase; TP4A 92.7 0.35 1.2E-05 45.9 8.5 32 252-283 20-54 (234)
343 2onk_A Molybdate/tungstate ABC 92.7 0.061 2.1E-06 51.3 3.3 27 248-275 22-48 (240)
344 4i1u_A Dephospho-COA kinase; s 92.7 0.076 2.6E-06 49.8 3.9 31 252-283 10-40 (210)
345 3b85_A Phosphate starvation-in 92.6 0.049 1.7E-06 50.8 2.5 23 252-274 23-45 (208)
346 2ghi_A Transport protein; mult 92.6 0.056 1.9E-06 52.2 3.0 28 248-275 43-70 (260)
347 2zu0_C Probable ATP-dependent 92.6 0.066 2.2E-06 51.9 3.5 27 248-274 43-69 (267)
348 1g8f_A Sulfate adenylyltransfe 92.5 0.064 2.2E-06 57.0 3.5 26 252-277 396-421 (511)
349 2ixe_A Antigen peptide transpo 92.5 0.059 2E-06 52.4 3.0 28 248-275 42-69 (271)
350 2d2e_A SUFC protein; ABC-ATPas 92.5 0.06 2.1E-06 51.6 3.0 27 248-274 26-52 (250)
351 2gks_A Bifunctional SAT/APS ki 92.4 0.25 8.6E-06 52.9 8.0 37 251-287 372-411 (546)
352 2pze_A Cystic fibrosis transme 92.4 0.053 1.8E-06 51.3 2.4 28 248-275 31-58 (229)
353 1g6h_A High-affinity branched- 92.4 0.053 1.8E-06 52.2 2.5 28 248-275 30-57 (257)
354 3fvq_A Fe(3+) IONS import ATP- 92.4 0.067 2.3E-06 54.3 3.3 28 248-275 27-54 (359)
355 2ff7_A Alpha-hemolysin translo 92.4 0.054 1.8E-06 51.9 2.5 28 248-275 32-59 (247)
356 2olj_A Amino acid ABC transpor 92.4 0.063 2.2E-06 52.0 3.0 28 248-275 47-74 (263)
357 3tmk_A Thymidylate kinase; pho 92.3 0.13 4.6E-06 48.2 5.1 29 251-279 5-33 (216)
358 1sgw_A Putative ABC transporte 92.3 0.051 1.7E-06 51.0 2.2 28 248-275 32-59 (214)
359 2gza_A Type IV secretion syste 92.3 0.054 1.9E-06 54.9 2.5 72 249-320 173-262 (361)
360 1w36_D RECD, exodeoxyribonucle 92.3 0.076 2.6E-06 57.7 3.8 24 252-275 165-188 (608)
361 1nrj_B SR-beta, signal recogni 92.3 0.094 3.2E-06 48.1 4.0 25 251-275 12-36 (218)
362 1ji0_A ABC transporter; ATP bi 92.3 0.057 1.9E-06 51.5 2.5 28 248-275 29-56 (240)
363 2yz2_A Putative ABC transporte 92.3 0.066 2.3E-06 51.9 3.0 28 248-275 30-57 (266)
364 3lv8_A DTMP kinase, thymidylat 92.3 0.086 3E-06 50.2 3.7 25 251-275 27-51 (236)
365 1vpl_A ABC transporter, ATP-bi 92.2 0.067 2.3E-06 51.6 3.0 28 248-275 38-65 (256)
366 2dyk_A GTP-binding protein; GT 92.2 0.088 3E-06 45.4 3.5 23 252-274 2-24 (161)
367 2p67_A LAO/AO transport system 92.2 0.38 1.3E-05 48.1 8.6 27 249-275 54-80 (341)
368 3ice_A Transcription terminati 92.2 0.38 1.3E-05 49.3 8.5 28 248-275 171-198 (422)
369 2wjy_A Regulator of nonsense t 92.1 0.13 4.4E-06 57.8 5.5 24 252-275 372-395 (800)
370 3gfo_A Cobalt import ATP-bindi 92.1 0.058 2E-06 52.6 2.4 28 248-275 31-58 (275)
371 1lw7_A Transcriptional regulat 92.1 0.081 2.8E-06 53.5 3.6 28 251-278 170-197 (365)
372 2f1r_A Molybdopterin-guanine d 92.1 0.05 1.7E-06 49.2 1.7 24 252-275 3-26 (171)
373 3sop_A Neuronal-specific septi 92.1 0.082 2.8E-06 51.4 3.4 23 253-275 4-26 (270)
374 2qi9_C Vitamin B12 import ATP- 92.1 0.061 2.1E-06 51.7 2.4 29 248-276 23-51 (249)
375 2f9l_A RAB11B, member RAS onco 92.0 0.092 3.1E-06 47.7 3.5 23 252-274 6-28 (199)
376 4g1u_C Hemin import ATP-bindin 92.0 0.061 2.1E-06 52.2 2.4 28 248-275 34-61 (266)
377 2yyz_A Sugar ABC transporter, 92.0 0.083 2.8E-06 53.6 3.5 28 248-275 26-53 (359)
378 2it1_A 362AA long hypothetical 92.0 0.083 2.8E-06 53.7 3.5 28 248-275 26-53 (362)
379 4f4c_A Multidrug resistance pr 92.0 0.23 7.8E-06 58.9 7.7 28 248-275 1102-1129(1321)
380 1zd9_A ADP-ribosylation factor 92.0 0.87 3E-05 40.5 10.1 23 252-274 23-45 (188)
381 3cr8_A Sulfate adenylyltranfer 92.0 0.057 2E-06 58.0 2.4 39 249-287 367-409 (552)
382 3v9p_A DTMP kinase, thymidylat 92.0 0.087 3E-06 49.9 3.4 25 251-275 25-49 (227)
383 1oix_A RAS-related protein RAB 92.0 0.082 2.8E-06 47.9 3.1 24 252-275 30-53 (191)
384 3vkw_A Replicase large subunit 91.9 0.049 1.7E-06 56.8 1.7 25 249-273 159-183 (446)
385 4a2p_A RIG-I, retinoic acid in 91.9 0.55 1.9E-05 49.3 9.9 24 252-275 23-46 (556)
386 3rlf_A Maltose/maltodextrin im 91.9 0.086 2.9E-06 53.9 3.5 28 248-275 26-53 (381)
387 1v43_A Sugar-binding transport 91.9 0.086 3E-06 53.7 3.5 28 248-275 34-61 (372)
388 1z47_A CYSA, putative ABC-tran 91.8 0.077 2.6E-06 53.8 3.0 28 248-275 38-65 (355)
389 2nq2_C Hypothetical ABC transp 91.8 0.068 2.3E-06 51.4 2.4 28 248-275 28-55 (253)
390 2ihy_A ABC transporter, ATP-bi 91.8 0.069 2.4E-06 52.2 2.4 28 248-275 44-71 (279)
391 3ld9_A DTMP kinase, thymidylat 91.7 0.12 4.2E-06 48.7 4.1 27 251-277 21-47 (223)
392 1z2a_A RAS-related protein RAB 91.7 0.11 3.7E-06 45.0 3.5 23 252-274 6-28 (168)
393 3eiq_A Eukaryotic initiation f 91.7 0.25 8.4E-06 49.8 6.7 21 251-271 77-97 (414)
394 1u8z_A RAS-related protein RAL 91.6 0.11 3.8E-06 44.8 3.4 23 252-274 5-27 (168)
395 1kao_A RAP2A; GTP-binding prot 91.6 0.12 3.9E-06 44.6 3.5 24 252-275 4-27 (167)
396 2ykg_A Probable ATP-dependent 91.5 0.62 2.1E-05 50.8 10.1 23 252-274 29-51 (696)
397 3d31_A Sulfate/molybdate ABC t 91.5 0.073 2.5E-06 53.8 2.4 28 248-275 23-50 (348)
398 2ce2_X GTPase HRAS; signaling 91.5 0.11 3.7E-06 44.7 3.3 24 252-275 4-27 (166)
399 1g29_1 MALK, maltose transport 91.5 0.087 3E-06 53.7 3.0 28 248-275 26-53 (372)
400 1nij_A Hypothetical protein YJ 91.5 0.18 6E-06 50.1 5.2 24 252-275 5-28 (318)
401 3k53_A Ferrous iron transport 91.4 0.26 9E-06 47.3 6.2 23 252-274 4-26 (271)
402 3fmp_B ATP-dependent RNA helic 91.3 0.36 1.2E-05 50.2 7.7 51 215-268 92-148 (479)
403 1ek0_A Protein (GTP-binding pr 91.3 0.13 4.3E-06 44.6 3.5 24 252-275 4-27 (170)
404 4ag6_A VIRB4 ATPase, type IV s 91.3 0.18 6.3E-06 51.3 5.2 35 250-284 34-71 (392)
405 3gd7_A Fusion complex of cysti 91.3 0.1 3.6E-06 53.5 3.3 28 248-275 44-71 (390)
406 2db3_A ATP-dependent RNA helic 91.2 0.69 2.4E-05 47.6 9.6 18 251-268 93-110 (434)
407 1upt_A ARL1, ADP-ribosylation 91.2 0.15 5.3E-06 44.3 4.0 25 250-274 6-30 (171)
408 2lkc_A Translation initiation 91.2 0.16 5.5E-06 44.5 4.1 25 249-273 6-30 (178)
409 1z0j_A RAB-22, RAS-related pro 91.2 0.13 4.6E-06 44.5 3.5 24 252-275 7-30 (170)
410 1ky3_A GTP-binding protein YPT 91.1 0.13 4.4E-06 45.2 3.4 25 251-275 8-32 (182)
411 2zej_A Dardarin, leucine-rich 91.1 0.098 3.4E-06 46.8 2.6 21 253-273 4-24 (184)
412 2wji_A Ferrous iron transport 91.1 0.12 4.1E-06 45.3 3.1 23 252-274 4-26 (165)
413 1wms_A RAB-9, RAB9, RAS-relate 91.1 0.14 4.6E-06 45.0 3.5 23 252-274 8-30 (177)
414 2bbs_A Cystic fibrosis transme 91.1 0.098 3.4E-06 51.4 2.8 28 248-275 61-88 (290)
415 2xzl_A ATP-dependent helicase 91.0 0.19 6.4E-06 56.5 5.3 23 252-274 376-398 (802)
416 1gm5_A RECG; helicase, replica 91.0 1.4 4.6E-05 49.3 12.2 34 251-284 389-425 (780)
417 1z08_A RAS-related protein RAB 91.0 0.14 4.8E-06 44.5 3.5 23 252-274 7-29 (170)
418 2nzj_A GTP-binding protein REM 90.9 0.14 4.7E-06 44.8 3.4 23 252-274 5-27 (175)
419 1g16_A RAS-related protein SEC 90.9 0.14 4.6E-06 44.5 3.3 23 252-274 4-26 (170)
420 1ko7_A HPR kinase/phosphatase; 90.9 0.18 6.2E-06 50.1 4.5 30 250-280 143-172 (314)
421 2pjz_A Hypothetical protein ST 90.9 0.11 3.7E-06 50.3 2.9 27 248-275 28-54 (263)
422 1oxx_K GLCV, glucose, ABC tran 90.8 0.076 2.6E-06 53.8 1.8 28 248-275 28-55 (353)
423 4tmk_A Protein (thymidylate ki 90.8 0.15 5.2E-06 47.7 3.7 24 252-275 4-27 (213)
424 1c1y_A RAS-related protein RAP 90.8 0.15 5.2E-06 44.0 3.5 23 252-274 4-26 (167)
425 1r2q_A RAS-related protein RAB 90.8 0.16 5.3E-06 44.0 3.5 23 252-274 7-29 (170)
426 3bc1_A RAS-related protein RAB 90.7 0.15 5.3E-06 45.1 3.5 23 252-274 12-34 (195)
427 2gj8_A MNME, tRNA modification 90.7 0.14 4.8E-06 45.4 3.2 24 251-274 4-27 (172)
428 1r8s_A ADP-ribosylation factor 90.6 0.17 5.8E-06 43.7 3.7 23 253-275 2-24 (164)
429 2wsm_A Hydrogenase expression/ 90.6 0.16 5.5E-06 46.7 3.7 25 252-276 31-55 (221)
430 1f2t_A RAD50 ABC-ATPase; DNA d 90.6 0.17 5.8E-06 44.4 3.6 24 252-275 24-47 (149)
431 3fho_A ATP-dependent RNA helic 90.6 0.71 2.4E-05 48.7 9.1 24 251-274 158-182 (508)
432 3nh6_A ATP-binding cassette SU 90.6 0.089 3E-06 52.2 1.9 28 248-275 77-104 (306)
433 2erx_A GTP-binding protein DI- 90.5 0.15 5.3E-06 44.1 3.3 22 252-273 4-25 (172)
434 3e2i_A Thymidine kinase; Zn-bi 90.5 0.19 6.6E-06 47.2 4.1 32 252-283 29-63 (219)
435 3q85_A GTP-binding protein REM 90.5 0.16 5.5E-06 44.1 3.3 21 253-273 4-24 (169)
436 2wjg_A FEOB, ferrous iron tran 90.4 0.15 5.2E-06 45.3 3.2 23 252-274 8-30 (188)
437 2npi_A Protein CLP1; CLP1-PCF1 90.4 0.15 5E-06 53.5 3.5 27 249-275 136-162 (460)
438 1z0f_A RAB14, member RAS oncog 90.4 0.17 5.9E-06 44.2 3.5 24 252-275 16-39 (179)
439 2vp4_A Deoxynucleoside kinase; 90.3 0.11 3.7E-06 48.8 2.2 26 249-274 18-43 (230)
440 2a9k_A RAS-related protein RAL 90.3 0.17 5.9E-06 44.6 3.4 23 252-274 19-41 (187)
441 3lxw_A GTPase IMAP family memb 90.3 0.48 1.7E-05 44.9 6.8 25 250-274 20-44 (247)
442 2y8e_A RAB-protein 6, GH09086P 90.2 0.17 5.7E-06 44.3 3.3 23 252-274 15-37 (179)
443 3clv_A RAB5 protein, putative; 90.2 0.2 6.9E-06 44.6 3.9 24 251-274 7-30 (208)
444 3o8b_A HCV NS3 protease/helica 90.2 3.2 0.00011 45.4 14.0 37 248-284 229-265 (666)
445 4dsu_A GTPase KRAS, isoform 2B 90.2 0.18 6.2E-06 44.6 3.5 24 252-275 5-28 (189)
446 2fn4_A P23, RAS-related protei 90.1 0.17 5.8E-06 44.3 3.3 23 252-274 10-32 (181)
447 3eab_A Spastin; spastin, MIT, 90.1 0.014 4.8E-07 46.8 -3.5 57 15-72 7-68 (89)
448 3tui_C Methionine import ATP-b 90.1 0.16 5.6E-06 51.5 3.5 28 248-275 51-78 (366)
449 2hf9_A Probable hydrogenase ni 90.1 0.2 6.9E-06 46.2 3.8 25 251-275 38-62 (226)
450 2hxs_A RAB-26, RAS-related pro 90.1 0.17 5.7E-06 44.4 3.1 23 252-274 7-29 (178)
451 3q72_A GTP-binding protein RAD 90.1 0.17 6E-06 43.7 3.2 22 252-273 3-24 (166)
452 3con_A GTPase NRAS; structural 90.1 0.19 6.4E-06 44.8 3.5 24 252-275 22-45 (190)
453 1pui_A ENGB, probable GTP-bind 90.0 0.11 3.7E-06 47.4 1.9 26 248-273 23-48 (210)
454 2oil_A CATX-8, RAS-related pro 90.0 0.19 6.5E-06 45.0 3.5 24 252-275 26-49 (193)
455 2dpy_A FLII, flagellum-specifi 90.0 0.25 8.7E-06 51.4 4.9 30 249-278 155-184 (438)
456 2efe_B Small GTP-binding prote 90.0 0.19 6.6E-06 44.1 3.5 23 252-274 13-35 (181)
457 1m7b_A RND3/RHOE small GTP-bin 89.9 0.18 6.2E-06 44.9 3.3 23 252-274 8-30 (184)
458 1wp9_A ATP-dependent RNA helic 89.9 0.39 1.3E-05 48.8 6.2 32 253-284 25-60 (494)
459 3t1o_A Gliding protein MGLA; G 89.9 0.19 6.4E-06 44.8 3.3 24 252-275 15-38 (198)
460 3tw8_B RAS-related protein RAB 89.9 0.18 6E-06 44.2 3.1 22 252-273 10-31 (181)
461 3kkq_A RAS-related protein M-R 89.9 0.2 7E-06 44.2 3.6 24 251-274 18-41 (183)
462 1svi_A GTP-binding protein YSX 89.8 0.19 6.6E-06 44.9 3.4 24 251-274 23-46 (195)
463 1yrb_A ATP(GTP)binding protein 89.8 0.38 1.3E-05 45.4 5.7 34 250-283 13-48 (262)
464 3l9o_A ATP-dependent RNA helic 89.8 0.37 1.3E-05 56.0 6.5 33 252-284 200-235 (1108)
465 1knx_A Probable HPR(Ser) kinas 89.8 0.14 4.9E-06 50.8 2.7 31 249-280 145-175 (312)
466 2bme_A RAB4A, RAS-related prot 89.7 0.19 6.6E-06 44.5 3.3 24 252-275 11-34 (186)
467 2g6b_A RAS-related protein RAB 89.7 0.21 7.2E-06 43.8 3.5 25 251-275 10-34 (180)
468 2obl_A ESCN; ATPase, hydrolase 89.7 0.29 9.9E-06 49.3 4.9 29 250-278 70-98 (347)
469 1mh1_A RAC1; GTP-binding, GTPa 89.7 0.21 7.3E-06 44.0 3.5 23 252-274 6-28 (186)
470 3hjn_A DTMP kinase, thymidylat 89.7 0.33 1.1E-05 44.6 4.9 30 254-283 3-35 (197)
471 1m2o_B GTP-binding protein SAR 89.6 0.2 6.7E-06 45.2 3.3 24 251-274 23-46 (190)
472 2p6r_A Afuhel308 helicase; pro 89.6 0.45 1.5E-05 52.3 6.8 33 251-283 40-75 (702)
473 3bwd_D RAC-like GTP-binding pr 89.5 0.25 8.4E-06 43.5 3.8 23 252-274 9-31 (182)
474 2atv_A RERG, RAS-like estrogen 89.4 0.25 8.4E-06 44.5 3.8 24 251-274 28-51 (196)
475 2gf9_A RAS-related protein RAB 89.4 0.23 7.8E-06 44.4 3.5 24 252-275 23-46 (189)
476 2cxx_A Probable GTP-binding pr 89.3 0.19 6.7E-06 44.5 3.0 22 253-274 3-24 (190)
477 3iby_A Ferrous iron transport 89.3 0.53 1.8E-05 45.0 6.3 23 252-274 2-24 (256)
478 3pqc_A Probable GTP-binding pr 89.3 0.2 6.8E-06 44.6 3.1 23 252-274 24-46 (195)
479 4a2q_A RIG-I, retinoic acid in 89.3 1.2 4.3E-05 49.5 10.2 33 252-284 264-304 (797)
480 2bov_A RAla, RAS-related prote 89.3 0.24 8.1E-06 44.6 3.6 24 251-274 14-37 (206)
481 3ch4_B Pmkase, phosphomevalona 89.2 0.36 1.2E-05 44.8 4.8 38 249-286 9-47 (202)
482 3tkl_A RAS-related protein RAB 89.2 0.24 8.1E-06 44.3 3.5 24 252-275 17-40 (196)
483 1vg8_A RAS-related protein RAB 89.2 0.23 7.7E-06 44.9 3.4 25 251-275 8-32 (207)
484 1ksh_A ARF-like protein 2; sma 89.2 0.23 8E-06 44.0 3.4 25 250-274 17-41 (186)
485 1dek_A Deoxynucleoside monopho 89.2 0.21 7.2E-06 47.7 3.3 27 253-279 3-29 (241)
486 4hlc_A DTMP kinase, thymidylat 89.1 0.36 1.2E-05 44.7 4.8 31 252-282 3-35 (205)
487 4gl2_A Interferon-induced heli 89.1 1.1 3.7E-05 48.9 9.4 24 252-275 23-46 (699)
488 1e9r_A Conjugal transfer prote 89.1 0.31 1E-05 50.3 4.7 34 251-284 53-89 (437)
489 1moz_A ARL1, ADP-ribosylation 89.1 0.17 5.7E-06 44.7 2.3 24 250-273 17-40 (183)
490 1x3s_A RAS-related protein RAB 89.0 0.25 8.7E-06 43.9 3.5 24 252-275 16-39 (195)
491 3dz8_A RAS-related protein RAB 89.0 0.25 8.4E-06 44.3 3.4 24 252-275 24-47 (191)
492 3ihw_A Centg3; RAS, centaurin, 89.0 0.25 8.6E-06 44.2 3.5 23 252-274 21-43 (184)
493 2gf0_A GTP-binding protein DI- 88.9 0.27 9.2E-06 44.0 3.7 24 251-274 8-31 (199)
494 3c5c_A RAS-like protein 12; GD 88.9 0.25 8.7E-06 44.2 3.5 23 252-274 22-44 (187)
495 1z06_A RAS-related protein RAB 88.9 0.26 8.8E-06 44.0 3.5 23 252-274 21-43 (189)
496 3t5g_A GTP-binding protein RHE 88.9 0.24 8.4E-06 43.6 3.3 23 252-274 7-29 (181)
497 2fg5_A RAB-22B, RAS-related pr 88.8 0.24 8.2E-06 44.5 3.3 23 252-274 24-46 (192)
498 2p5s_A RAS and EF-hand domain 88.8 0.27 9.2E-06 44.4 3.6 24 251-274 28-51 (199)
499 2a5j_A RAS-related protein RAB 88.8 0.26 9E-06 44.1 3.5 23 252-274 22-44 (191)
500 3i5x_A ATP-dependent RNA helic 88.8 1.3 4.4E-05 46.9 9.5 20 250-269 110-129 (563)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-45 Score=379.50 Aligned_cols=258 Identities=34% Similarity=0.560 Sum_probs=233.1
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+......+.|+++|+||+|++++|++|++.+.+|+.+|+.|.+. ..+++++|||||||||||++|+++|++++.+|+.+
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34455667899999999999999999999999999999999874 78889999999999999999999999999999999
Q ss_pred eccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
+++++.++|.|++++.++.+|..|+..+||||||||+|++++.+.... ..+...++++++|+..|+++... .+|+||+
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIa 292 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIM 292 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEe
Confidence 999999999999999999999999999999999999999999876533 23345577889999999998654 4599999
Q ss_pred EeCCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 362 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 362 aTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
|||+|+.||++++| ||+..+++++|+.++|.+||+.+++..+...+.+++.+|+.|.||||+||..+|++|+..++|+
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999 9999999999999999999999999999888999999999999999999999999999998874
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 480 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~ 480 (498)
+. ..|+++||..|++++.++..+
T Consensus 373 ------~~------------~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 ------RR------------IHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp ------TC------------SBCCHHHHHHHHHHHHHHHTC
T ss_pred ------CC------------CCcCHHHHHHHHHHHhCcccc
Confidence 11 239999999999988765443
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-43 Score=371.79 Aligned_cols=262 Identities=33% Similarity=0.560 Sum_probs=229.3
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|+++|+||+|++++|++|++.+.+|+.+++.|... ..++++||||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 346799999999999999999999999999999999875 7899999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.++|.|.+++.++.+|..|+..+||||||||+|.++..|.... .......+.+..++..|++..... +|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG-NIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT-TEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC-cEEEEeCCCCc
Confidence 9999999999999999999999999999999999998886533 334455678889999999886544 59999999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.||++++| ||+..+++++|+.++|.+||+.+++..+...+++++.||+.|.||||+||+.+|++|++.++|+-
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999988889999999999999999999999999999998851
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh--hHHHHHHHH
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL--HAHRYEKFN 489 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~--~~~~~~~~~ 489 (498)
. ..++.+||..|++++.++..+ ...+|.+||
T Consensus 435 --~------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 --R------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp --C------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred --C------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 1 138999999999998765442 357788886
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-44 Score=372.55 Aligned_cols=255 Identities=33% Similarity=0.566 Sum_probs=231.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|+++|+||+|++++|++|++.+.+|+.+|+.|.+. .+++++||||||||||||++|+++|++++.+|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 346799999999999999999999999999999998875 7888999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh-hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.++|.|.+++.++.+|..|+..+||||||||+|.+++.|...... .....+++..|+..|+++.... +|+||+|||+|
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~-~ViVIaaTNrp 330 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLAATNRV 330 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC-SSEEEEECSSC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC-CEEEEEeCCCc
Confidence 999999999999999999999999999999999999988654332 3345677889999999987544 58899999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.||++++| ||+..+++++|+.++|.+||+.+++..+...+++++.||+.|.||||+||.++|++|+..++|+-
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999988 99999999999999999999999999888889999999999999999999999999999988751
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA 482 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~ 482 (498)
. ..|+.+||..|+++++|+.+..+
T Consensus 407 --~------------~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 407 --Q------------SSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp --C------------SSBCHHHHHHHHHSCSSSCCCCC
T ss_pred --C------------CCcCHHHHHHHHHHHhCCCCcCc
Confidence 1 23999999999999999876543
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-43 Score=368.18 Aligned_cols=253 Identities=34% Similarity=0.548 Sum_probs=229.1
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|+++|+||+|++++|++|++.+.+|+.+++.|... ..++++||||||||||||++|+++|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 346799999999999999999999999999999999875 7888999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.++|.|++++.++.+|..|+..+||||||||+|++++.|..... ......+.+..++..+++..... +|+||+|||+|
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~-~ViVIaATNrp 331 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG-DVKVIMATNKI 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS-SEEEEEEESCS
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCCh
Confidence 99999999999999999999999999999999999998864332 23345677889999999886544 59999999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.||++++| ||+..|++++|+.++|.+||+.+++..+...+++++.||+.|.||||+||+++|++|+..++|+
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~----- 406 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE----- 406 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999999 9999999999999999999999999998888999999999999999999999999999998874
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 480 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~ 480 (498)
.. ..|+++||..|++++.|+..+
T Consensus 407 -~~------------~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 407 -RR------------MQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp -TC------------SCBCHHHHHHHHHHHHHHHCC
T ss_pred -CC------------CccCHHHHHHHHHHHhCCCCh
Confidence 11 239999999999998776543
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-43 Score=369.78 Aligned_cols=261 Identities=33% Similarity=0.584 Sum_probs=228.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 208 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 208 ~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
.....|+++|+||+|++++|++|++.+.+|+.+|+.|... ..+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 3446799999999999999999999999999999999875 788899999999999999999999999999999999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
+.++|.|.+++.++.+|..|+...||||||||+|.+++.|..... ......++++.||..|+++.... +|+||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG-QTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT-SSEEEEEESS
T ss_pred hccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC-CeEEEEecCC
Confidence 999999999999999999999999999999999999988754332 33445678899999999987544 5889999999
Q ss_pred CCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 010888 366 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443 (498)
Q Consensus 366 p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~ 443 (498)
|+.||++++| ||+..|++++|+.++|.+||+.+++..+...+.+++.+|+.|.||||+||..+|++|+..++++
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~---- 405 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD---- 405 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT----
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999998 7999999999999999999999999988888999999999999999999999999999998874
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHHHHH
Q 010888 444 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFN 489 (498)
Q Consensus 444 le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~~~~~~~~ 489 (498)
.. ..|+.+||..|++++.|+.. ...+.+|.
T Consensus 406 --~~------------~~i~~~d~~~Al~~v~~~~k--~e~~~e~~ 435 (437)
T 4b4t_L 406 --DR------------DHINPDDLMKAVRKVAEVKK--LEGTIEYQ 435 (437)
T ss_dssp --TC------------SSBCHHHHHHHHHHHHHTCC----------
T ss_pred --CC------------CCCCHHHHHHHHHHHHhccC--cccchhhh
Confidence 11 13999999999999887643 33344443
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3e-44 Score=400.71 Aligned_cols=285 Identities=34% Similarity=0.615 Sum_probs=196.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|+++|++|+|++++|++|++.+.+|+++++.|.+. ..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 34688999999999999999999999999999998875 78889999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhcccc-chhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
++|+|++++.++.+|..|+...||||||||+|++++.|... ...+...++++++||.+|+++... .+|+||+|||+|+
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~-~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRPD 627 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS-SSEEEECC-CCSS
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC-CCEEEEEeCCCch
Confidence 99999999999999999999999999999999999988643 234556788999999999999754 4599999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.||++++| ||++.+++++|+.++|.+||+.++++.+...+++++.||+.|+||||+||.++|++|+..++|+......
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~ 707 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC---
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 9999999999999999999999999998888999999999999999999999999999999998654221
Q ss_pred chhc-------cCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 446 GRQE-------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 446 ~~~~-------~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
.... ..........++|+++||.+||++++||.++ ++..|++|.+.|++.
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 708 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp --------------------CCC----CCTTTC---------------CCCC------
T ss_pred hhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 1100 0001111223569999999999999999886 589999999998764
No 7
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=344.38 Aligned_cols=283 Identities=48% Similarity=0.829 Sum_probs=245.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~s~l~ 288 (498)
...|+++|++|+|++++|+.|++.+.+|+.+++.+.+...+++++||+||||||||++|+++|+++ +.+++.++++++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 456889999999999999999999999999999988777788999999999999999999999999 8999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 368 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~ 368 (498)
+.+.|.+++.++.+|..++...|+||||||+|.+.+.++.. .....+++++.++..++++......++||++||.|+.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999998877654 2345678899999999998766677999999999999
Q ss_pred CCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 369 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 369 Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
++++++|||+..+++++|+.++|..|++.++...+.. .+.++..+++.+.||+++||..+|++|+..++|+......-.
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999998776654 456788999999999999999999999999999876431100
Q ss_pred h--cc------------------------------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhch
Q 010888 448 Q--EV------------------------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 494 (498)
Q Consensus 448 ~--~~------------------------------~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~ 494 (498)
. .. .+.+. ....+|+++||..||+.++||.+. ++..|++|+++||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGG-BCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred hhccccccccccccccccccccccccchhhcccccccccc-ccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 0 00 00000 012479999999999999999875 58999999999998
Q ss_pred h
Q 010888 495 E 495 (498)
Q Consensus 495 ~ 495 (498)
+
T Consensus 321 ~ 321 (322)
T 1xwi_A 321 E 321 (322)
T ss_dssp C
T ss_pred C
Confidence 6
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-41 Score=354.05 Aligned_cols=252 Identities=37% Similarity=0.609 Sum_probs=227.0
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|+++|+||+|++++|++|++.+.+|+.+++.|... ..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 346789999999999999999999999999999998875 7889999999999999999999999999999999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.++|.|.+++.++.+|..|+..+||||||||+|.+++.|..... .+....+++++|+..|+++.... +|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence 99999999999999999999999999999999999998854332 23345778999999999986544 58999999999
Q ss_pred CCCCHHHHh--cccceeEec-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 010888 367 WELDAAMLR--RLEKRILVP-LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 443 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~-~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~ 443 (498)
+.||++++| ||+..|++| +|+.++|..||+.+++..+...+.+++.+|..|.||||+||..+|++|++.++|+
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~---- 397 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---- 397 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----
Confidence 999999999 999999996 8999999999999999988888999999999999999999999999999998875
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhc-cCCChh
Q 010888 444 LEGRQEVAPDDELPQIGPIRPEDVEIALKN-TRPSAH 479 (498)
Q Consensus 444 le~~~~~~~~~~~~~~~~It~eD~~~AL~~-~~ps~~ 479 (498)
+. ..|+++||.+|+.. ++++.+
T Consensus 398 --~~------------~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 398 --NR------------YVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp --TC------------SSBCHHHHHHHHHHHSCSCCC
T ss_pred --CC------------CCCCHHHHHHHHHHhhCccCC
Confidence 11 13999999999976 455543
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.7e-41 Score=343.21 Aligned_cols=286 Identities=49% Similarity=0.795 Sum_probs=244.8
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 207 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 207 ~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
.+....|+++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34556789999999999999999999999999999988887788899999999999999999999999999999999999
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+.+.+.|..++.++.+|..++...|+||||||+|.+.+.+... .....+++++.++..+++.......++||+|||.|
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999998876432 23345778899999999886666779999999999
Q ss_pred CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 367 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 367 ~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
+.|++++++||+..+++++|+.++|..|++.++...+.. .+.++..+++.+.||+++||..+|++|+..++++..+...
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999877654 4567889999999999999999999999999999876422
Q ss_pred chhcc--------------------------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 446 GRQEV--------------------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 446 ~~~~~--------------------------~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
..... .+.+ .....+|+++||..|++.++||.+. ++.+|++|+++||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEAD-ELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSS-CBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 11000 0000 1123569999999999999999875 589999999999986
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=5.6e-40 Score=338.21 Aligned_cols=290 Identities=49% Similarity=0.808 Sum_probs=232.8
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+...+....|+++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+++.++
T Consensus 37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp ----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 34445556788999999999999999999999999999998887788899999999999999999999999999999999
Q ss_pred ccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
++++.+.+.|..++.++.+|..++...|+||||||+|.+.+.+... .....+++.+.|+..++++......++||++|
T Consensus 117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~at 194 (355)
T 2qp9_X 117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGAT 194 (355)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEE
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeec
Confidence 9999999999999999999999999999999999999998876543 33456788899999999886656679999999
Q ss_pred CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 364 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 364 n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
|.++.+++++++||+..+++++|+.++|..||+.++...+.. .+.+++.|++.+.||+++||..+|++|...++++...
T Consensus 195 n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 195 NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877653 4567889999999999999999999999999998654
Q ss_pred Hhhchh------------ccCCCC-------------CCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 443 LLEGRQ------------EVAPDD-------------ELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 443 ~le~~~------------~~~~~~-------------~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
...... ...+.+ ......+|+++||..|++.++||++. ++..|++|.++||++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 275 ATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353 (355)
T ss_dssp CSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC--
T ss_pred hhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 311000 000000 00013469999999999999999876 579999999999986
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.7e-39 Score=342.68 Aligned_cols=291 Identities=47% Similarity=0.812 Sum_probs=237.4
Q ss_pred HHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEE
Q 010888 202 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFF 280 (498)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i 280 (498)
..+...+....|+++|++|+|++++++.|.+.+.+|+.+++.+.+...+++++||+||||||||++|+++|+++ +.+++
T Consensus 118 ~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~ 197 (444)
T 2zan_A 118 NQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF 197 (444)
T ss_dssp ------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred HHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence 34455566678899999999999999999999999999999887666778999999999999999999999999 89999
Q ss_pred EEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEE
Q 010888 281 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360 (498)
Q Consensus 281 ~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 360 (498)
.++++++.+.+.|..+..++.+|..++...|+||||||+|.+.+.+... .....+++++.++..++++.....+++||
T Consensus 198 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 198 SISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp EECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred EEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 9999999999999999999999999999999999999999998876543 23445788999999999886556679999
Q ss_pred EEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 361 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 361 aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
+|||.|+.++++++|||+..+++++|+.++|..|++.++...+.. .+.++..|+..+.||+++||..+|++|+..++|+
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776643 4567899999999999999999999999999999
Q ss_pred HHHHhhchhc---------------c-----------------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHH
Q 010888 440 LMVLLEGRQE---------------V-----------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYE 486 (498)
Q Consensus 440 l~~~le~~~~---------------~-----------------~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~ 486 (498)
......-... . .+.+. ....+|+++||..||+.++||.+. ++..|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~ 434 (444)
T 2zan_A 356 VQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMWDMLRSLSSTKPTVNEQDLLKLK 434 (444)
T ss_dssp HHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTC-BCCCCEEHHHHHHHHHTCCCSCCHHHHHHHH
T ss_pred HHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhh-ccCCccCHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 7653100000 0 00000 012479999999999999999875 589999
Q ss_pred HHHHHhchh
Q 010888 487 KFNADYGSE 495 (498)
Q Consensus 487 ~~~~~~g~~ 495 (498)
+|+++||++
T Consensus 435 ~~~~~~~~~ 443 (444)
T 2zan_A 435 KFTEDFGQE 443 (444)
T ss_dssp HHTSSCTTT
T ss_pred HHHHHHcCC
Confidence 999999986
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.8e-38 Score=317.20 Aligned_cols=286 Identities=34% Similarity=0.621 Sum_probs=239.6
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
+++....|.++|++|+|++++++.|++.+.+++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 455567789999999999999999999999999999887764 6778999999999999999999999999999999999
Q ss_pred cccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe
Q 010888 285 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAAT 363 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT 363 (498)
+++.+.+.|..++.++.+|..+....|+||||||+|.+.+.++.... ......++++.++..++++... .+++||++|
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~at 161 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEec
Confidence 99999999999999999999999999999999999999987643211 1122356778899999987543 458999999
Q ss_pred CCCCCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 364 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 364 n~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
|.++.+++++++ ||+..+++++|+.++|.+|++.+++..+...+.+++.++..+.||+|+||+.+|++|...++++..
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 999999999999999999999999888777788999999999999999999999999999998765
Q ss_pred HHhhchhcc-------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHh
Q 010888 442 VLLEGRQEV-------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADY 492 (498)
Q Consensus 442 ~~le~~~~~-------~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~ 492 (498)
......... ..........+|+++||..||+.++||.+. ++..|++|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 432111000 000000112469999999999999999876 579999999988
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.3e-39 Score=357.36 Aligned_cols=265 Identities=34% Similarity=0.570 Sum_probs=235.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
..|.++|+||+|+++++++|++.+.+|+.+|+.|..+ ..++++||||||||||||++|+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 3578999999999999999999999999999999886 788999999999999999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
++.|++++.++.+|..|+..+|+||||||+|.+++.++... ++..++++++|+..|+++.... +|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhc
Confidence 99999999999999999999999999999999999876543 3345789999999999986544 59999999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
|++++| ||++.+++++|+.++|.+||+.+++......++++..+|.+|.||+++||..+|++|+..+++|........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999 999999999999999999999999999988999999999999999999999999999999999977655433
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
......+.. ....++++||..|++.++|+..
T Consensus 434 ~~~~~~e~~-~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 434 DETIDAEVM-NSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp CCCCSHHHH-HHCEECTTHHHHHHSSSSCCCC
T ss_pred ccccchhhh-ccceeeHHHHHHHHHhCCCccc
Confidence 221111100 1123899999999999999864
No 14
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-37 Score=315.84 Aligned_cols=285 Identities=43% Similarity=0.740 Sum_probs=237.5
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 203 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 203 ~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+.+++....++.+|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+++.+
T Consensus 69 ~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 69 LIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp HHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 45666777788999999999999999999999999988888877777889999999999999999999999999999999
Q ss_pred eccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-CCCcEEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLA 361 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viVIa 361 (498)
+++++...+.|..+..++.+|..+....|+||||||+|.+.+.+... ......++++.++..+++... ...+++||+
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~ 226 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRILVVG 226 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEE
T ss_pred ehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEEEEE
Confidence 99999999999999999999999998899999999999998765432 233456788899999987643 345799999
Q ss_pred EeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 010888 362 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 362 aTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl 440 (498)
+||.++.+++++++||...+++++|+.++|..+++.++...... .+.+++.+++.+.||+++||..+|++||..++|++
T Consensus 227 atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 227 ATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp EESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred ecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988665433 34467889999999999999999999999999875
Q ss_pred HHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh-hhHHHHHHHHHHhchh
Q 010888 441 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 495 (498)
Q Consensus 441 ~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~-~~~~~~~~~~~~~g~~ 495 (498)
.+....... .....+|+.+||..|++.++||.+ +++..|++|.+.||+.
T Consensus 307 ~~~~~~~~~------~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 307 QTADIATIT------PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp CC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred hhhhhcccc------ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 432221111 122356999999999999999976 4689999999999974
No 15
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=5.7e-37 Score=306.63 Aligned_cols=287 Identities=46% Similarity=0.763 Sum_probs=231.8
Q ss_pred HHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 202 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..+.+++....++.+|++|+|++.+++.+.+.+..+..+++.+.+...+++++||+||||||||++|+++|++++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp HHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 34556677778899999999999999999999999988888887777778999999999999999999999999999999
Q ss_pred EeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC--CCcEEE
Q 010888 282 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELVFV 359 (498)
Q Consensus 282 v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~--~~~viV 359 (498)
++++++.+.+.|.....++.+|..+....|+||||||+|.+...++... .+....+.+.++..+++.... ...++|
T Consensus 85 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 85 ISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp EESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred eeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 9999999999999999999999999999999999999999987765322 223456778888888876432 346899
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 438 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~r 438 (498)
|++||.++.+++++++||+..+++++|+.++|..|++.++...... .+.++..+++.+.|++++||..++++|+..++|
T Consensus 163 i~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242 (297)
T ss_dssp EEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred EeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988766543 334578899999999999999999999999998
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchhc
Q 010888 439 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 496 (498)
Q Consensus 439 rl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~~ 496 (498)
++.+....... .....+|+.+||..|+..++||... ++..|++|++.||+..
T Consensus 243 ~~~~~~~~~~~------~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~ 295 (297)
T 3b9p_A 243 ELNVEQVKCLD------ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDIT 295 (297)
T ss_dssp TCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-------
T ss_pred HHhhhhccccc------ccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCee
Confidence 75433222111 1223459999999999999999765 5799999999999854
No 16
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=310.44 Aligned_cols=285 Identities=44% Similarity=0.710 Sum_probs=228.7
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 204 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 204 ~~~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+.+++....++++|++|+|++.+++.|.+.+..+..+++.+.+...+++++||+||||||||++|+++|++++.+++.++
T Consensus 101 ~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp GGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 45566667788999999999999999999999998888888877777899999999999999999999999999999999
Q ss_pred ccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-CCCcEEEEEE
Q 010888 284 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAA 362 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~viVIaa 362 (498)
++++.+.+.|..+..++.+|..+....|+||||||+|.+...+... ......++++.++..+++... ....++||++
T Consensus 181 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 258 (389)
T 3vfd_A 181 AASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258 (389)
T ss_dssp SCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEEE
T ss_pred HHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEEe
Confidence 9999999999999999999999999999999999999998765432 233456788889999987654 3456999999
Q ss_pred eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 010888 363 TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 441 (498)
Q Consensus 363 Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~ 441 (498)
||.++.+++++++||...+++++|+.++|..|++.++...... .+..+..++..+.|+++++|..++++|+..+++++.
T Consensus 259 tn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 259 TNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp ESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred cCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999899999999999999999998775543 334678899999999999999999999999998754
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchhc
Q 010888 442 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 496 (498)
Q Consensus 442 ~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~~ 496 (498)
+....... ......|+.+||..+++..+|+.+. .+..|++|.+.||++.
T Consensus 339 ~~~~~~~~------~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~ 388 (389)
T 3vfd_A 339 PEQVKNMS------ASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTT 388 (389)
T ss_dssp CC---CCS------SSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC---
T ss_pred hhhhhccc------hhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCcc
Confidence 33222111 1223459999999999999999765 5899999999999864
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=288.29 Aligned_cols=261 Identities=33% Similarity=0.567 Sum_probs=205.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
..|+++|+||+|++++|+.|++.+.+|+.+++.+... ...+++++|+||||||||++++++|.+++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578999999999999999999999999999888765 677788999999999999999999999999999999999988
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
.+.|..++.++.+|+.+....|+++|+||+|.+...+... ......++.+.++..|++.... ..++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 8888888999999999988889999999999987654321 1122345678899999987543 458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCC---CCCCCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~---~~~~~~~l~~La~~t--~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
|++++| ||+..+++++|+.++|.+||+.+++.. +...+.++..++..+ .||+|+||..+|++|+..++++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 999999999999999999999998542 345678899999874 5999999999999999999987543
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 481 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~ 481 (498)
..... . .....+|+++||..|+++++||.+.+
T Consensus 240 ~~~~~------~-~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKSG------N-EKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred hcccc------c-cccCCeecHHHHHHHHHHhcCCCChh
Confidence 21110 0 01123599999999999999998754
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.1e-34 Score=306.63 Aligned_cols=281 Identities=32% Similarity=0.527 Sum_probs=228.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
+..+|++|+|++.++++|.+.+..++.+++.+... ..+++++||+||||||||++|++++++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 46789999999999999999999999999888876 67788999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~ 371 (498)
.|.....++.+|..+....|++|||||+|.+.++++.. ..+....+++.|+..+++.... .+++||+|||+++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence 99999999999999999999999999999999876543 2345578899999999977543 45899999999999999
Q ss_pred HHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 010888 372 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 449 (498)
Q Consensus 372 al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~ 449 (498)
++++ ||+..+++++|+.++|.+||+.+++......+.++..++..+.||+++||..++++|+..++++..+.++....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9998 99999999999999999999999998888888899999999999999999999999999998875432221111
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhchhcc
Q 010888 450 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEIL 497 (498)
Q Consensus 450 ~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~---~~~~~~~~~~~g~~~~ 497 (498)
..... ......++++||..|++.++||...+ ..+-..|.+..|-+-|
T Consensus 436 ~~~~~-~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 436 TIDAE-VMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp SCCHH-HHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred ccchh-hcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCccc
Confidence 00000 00123599999999999999998765 3677889999997654
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.1e-33 Score=275.06 Aligned_cols=269 Identities=35% Similarity=0.557 Sum_probs=215.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|+++|++|+|++++++.|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678999999999999999999999988888877665 56778999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh-hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|.....++.+|..+....|+||||||+|.+.+++...... .......+..++..+++.... .+++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCch
Confidence 99999999999999999999999999999999998776543221 222345566677777766443 4588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+++++++ ||...+.++.|+.++|.+|++.++.......+.++..++..+.|+++++|+.+++.|...++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~----- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL----- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999988887778899999999999999999999999998877641
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChh---hhHHHHHHHHHHhchhcc
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNADYGSEIL 497 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~---~~~~~~~~~~~~~g~~~~ 497 (498)
...|+.+||.+|++++.+... ..-.+|..|..+||+.-+
T Consensus 243 -------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
T 3h4m_A 243 -------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHHH 284 (285)
T ss_dssp -------------CSSBCHHHHHHHHHHHHHHHCCC-------------------
T ss_pred -------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCCC
Confidence 023999999999998765432 235888999999998644
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.98 E-value=7.7e-31 Score=257.07 Aligned_cols=247 Identities=33% Similarity=0.519 Sum_probs=207.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...++.+|++|+|++++++.+.+.+.. +.+++.+... ...+++++|+||||||||++|++++++++.+++.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 346788999999999999999987654 5555555443 45678999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch-hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.|...+.++.+|..+....|+++||||+|.+...++.... ........++.++..+++... ..+++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPD 161 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCch
Confidence 9899999999999999999888999999999999887654321 122334677889999998754 34588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+++++++ ||+..+++++|+.++|.+|++.+++..+...+.++..++..+.||+++||..++++|...+.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998877777888899999999999999999999998877653
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
+ ...|+.+||..|++.+..
T Consensus 236 ~------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 N------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp T------------CSSBCHHHHHHHHHHHTT
T ss_pred C------------CCcccHHHHHHHHHHHhc
Confidence 0 123999999999988654
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=6.7e-31 Score=279.14 Aligned_cols=260 Identities=36% Similarity=0.556 Sum_probs=213.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.+.++|++|+|++++++++++.+.. +..+..+... ...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999998765 4556555554 5677899999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|.....++.+|..+....|+||||||+|.+..+++... .......++++.|+..++++... .+++||++||+++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhh
Confidence 9998889999999999999999999999999988765321 12233456788999999877543 458999999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
++++++ ||+..+.+++|+.++|.+|++.+++..+...+.++..++..+.|++++||.+++++|+..+.++ +
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------~- 240 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------G- 240 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------T-
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------C-
Confidence 999988 9999999999999999999999998888777888999999999999999999999998877652 0
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCCh-------hhhHHHHHHHHHH
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSA-------HLHAHRYEKFNAD 491 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~-------~~~~~~~~~~~~~ 491 (498)
...|+.+||..++.+..+.. +++...-..|++-
T Consensus 241 -----------~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~ 280 (476)
T 2ce7_A 241 -----------RDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEA 280 (476)
T ss_dssp -----------CSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHH
T ss_pred -----------CCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHh
Confidence 02399999999999876542 2233445555554
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=4.9e-34 Score=322.24 Aligned_cols=285 Identities=34% Similarity=0.622 Sum_probs=215.0
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...+.++|++++|++++++.+.+.+.+++.++..+... ..++.++||+||||||||++|+++|++++.+++.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 34678999999999999999999999998888877665 67778999999999999999999999999999999999999
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
++|.|..++.++.+|+.++...|+||||||+|.+...+.... .......++++.|+..|++.... .+++||+|||+++
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~v~vI~tTN~~~ 627 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRPD 627 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSCG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc-CCeEEEEecCCcc
Confidence 999999999999999999999999999999999988775432 23456678999999999987544 4588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH-h
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL-L 444 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~-l 444 (498)
.+|+++++ ||+..+++++|+.++|..||+.+++..+...+.++..+++.+.||+++||..+|++|+..++++.... +
T Consensus 628 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~ 707 (806)
T 1ypw_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707 (806)
T ss_dssp GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999888888899999999999999999999999999999874321 1
Q ss_pred hchhc------cCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 010888 445 EGRQE------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 495 (498)
Q Consensus 445 e~~~~------~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~~~~~~~~~g~~ 495 (498)
..... ...........+|+.+||..+++..+||.+. ++..|++|.+.|+..
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~ 765 (806)
T 1ypw_A 708 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp -------------------CCTTTTTTSSCCCCCC-----------------------
T ss_pred hhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Confidence 10000 0000011123469999999999999999876 589999999987643
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=8.6e-31 Score=256.22 Aligned_cols=247 Identities=34% Similarity=0.522 Sum_probs=189.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
|+++|++|+|++++++.+++.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568899999999999999998765 5555554443 56778999999999999999999999999999999999998888
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch--hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
.|.....++.+|..+....|+||||||+|.+...+..... ........+..++..+++... ...+++|++||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhc
Confidence 8888888999999999888999999999999876543211 011223456778888887643 3458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~--l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
++++++ ||+..+++++|+.++|.+|++.++.......+.+ +..++..+.|+++++|..++++|+..+.++-.
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~---- 234 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH---- 234 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 999999 9999999999999999999999987766654433 36789999999999999999999887765311
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
..|+.+||..|++++.++..
T Consensus 235 --------------~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 235 --------------TSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp ----------------CCBCCHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHhccChh
Confidence 23899999999998876654
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=2.9e-29 Score=268.08 Aligned_cols=261 Identities=34% Similarity=0.541 Sum_probs=215.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
.+.++|++|+|++++++++++.+.. +..+..+... ...++++||+||||||||++|+++|.+++.+++.++++++...
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 3789999999999999999997655 4455555544 5667889999999999999999999999999999999999888
Q ss_pred cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 291 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
+.|.....++.+|+.+....|+++||||+|.+...++... ...+.....++.++..+++... ...++++++||+|+.|
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~L 182 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDIL 182 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGS
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhc
Confidence 8888888899999988877899999999999987665321 1233345678889999998754 3458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
|+++++ ||+..+.+++|+.++|.+||+.+++......+.++..++..+.|++++||++++++|+..+.++ .
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------~- 255 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------G- 255 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT------C-
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh------C-
Confidence 999998 8999999999999999999999998877777888999999999999999999999998876542 0
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCCh-------hhhHHHHHHHHHHh
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSA-------HLHAHRYEKFNADY 492 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~-------~~~~~~~~~~~~~~ 492 (498)
...|+.+||..++.++.+.. +++.++...|++..
T Consensus 256 -----------~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g 296 (499)
T 2dhr_A 256 -----------RRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAG 296 (499)
T ss_dssp -----------CSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHH
T ss_pred -----------CCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHH
Confidence 12399999999999876653 23345566666543
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=1.9e-28 Score=239.70 Aligned_cols=243 Identities=37% Similarity=0.585 Sum_probs=197.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
....|.++|++++|.++++.++++.... ...+..+... ...+++++|+||||||||+++++++..++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4567889999999999999999987654 3344444433 4566789999999999999999999999999999999888
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
...+.+...+.+..+|+.+....|+++++||+|.+...+.... .........++.++..+++... ...++++++||.|
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~p 164 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRP 164 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESCG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCCc
Confidence 8777777778888999998877899999999999986654211 1122345667888888887754 3458899999999
Q ss_pred CCCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 010888 367 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 444 (498)
Q Consensus 367 ~~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~l 444 (498)
+.+|+++++ ||+..++++.|+.++|.+||+.+++......+.++..++..+.|++++||..++++|...+.++
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~----- 239 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE----- 239 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 8999999999999999999999988777777888999999999999999999999998876542
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHH
Q 010888 445 EGRQEVAPDDELPQIGPIRPEDVEIAL 471 (498)
Q Consensus 445 e~~~~~~~~~~~~~~~~It~eD~~~AL 471 (498)
. ...|+.+|+++++
T Consensus 240 -~------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 -G------------RRKITMKDLEEAA 253 (254)
T ss_dssp -T------------CSSBCHHHHHHHT
T ss_pred -c------------CCCcCHHHHHHHh
Confidence 0 1239999999886
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=1.6e-31 Score=263.09 Aligned_cols=253 Identities=34% Similarity=0.525 Sum_probs=202.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
..++.+|++|+|.+++++.+.+.+.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46788999999999999999997664 5666655543 566688999999999999999999999999999999999988
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch--hhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.+.|.....++.+|..+....|+||||||+|.+...+..... ........++.++..+++......+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 888877777788899998888999999999999876432110 000112345567777777655556689999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+++++++ ||+..+++++|+.++|.++++.+++......+.++..++..+.|++++||..+++.|...+.++
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~------ 236 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN------ 236 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS------
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998877777778888999999999999999999887754321
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA 482 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~~~~ 482 (498)
....|+.+|+..++....|+...+.
T Consensus 237 ------------~~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 237 ------------NQKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp ------------CCCSCCHHHHHTSCTTCCCCCC---
T ss_pred ------------ccCCcCHHHHHHHHHHHhhcchhhh
Confidence 0124999999999999999876543
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=4e-27 Score=233.64 Aligned_cols=243 Identities=37% Similarity=0.581 Sum_probs=195.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...|+++|++++|.+++++++++.... ...+..+... ...+++++|+||||||||+++++++..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 345789999999999999999987654 3334333333 45567899999999999999999999999999999998887
Q ss_pred hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 289 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
..+.+.....+..+|+.+....|+++++||+|.+...+.... .........++.++..+++... ...++++++||.|+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPD 189 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTT
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCch
Confidence 777777777888999998877899999999999876543211 1122335567778888887653 34588999999999
Q ss_pred CCCHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 010888 368 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 445 (498)
Q Consensus 368 ~Ld~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le 445 (498)
.+|+++++ ||+..+++++|+.++|.+||+.+++......+.++..++..+.|++++||+.++++|...+.++
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 263 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 263 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 8999999999999999999999988777777888999999999999999999999998776542
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 446 GRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 446 ~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
. ...|+.+|+++|++
T Consensus 264 ~------------~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 264 G------------RRKITMKDLEEAAS 278 (278)
T ss_dssp T------------CCSBCHHHHHHHTC
T ss_pred C------------CCCcCHHHHHHHhC
Confidence 0 12399999998863
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=9.1e-27 Score=262.92 Aligned_cols=265 Identities=34% Similarity=0.567 Sum_probs=224.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
..+.++|++|+|++.+++.|++.+..++.+++.+..+ ..++.++||+||||||||++|++++++++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 3467899999999999999999999999999998876 788899999999999999999999999999999999999999
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 369 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~L 369 (498)
.+.|..+..++.+|..+....|++|||||+|.+.+.+... ..+..+++.+.++..+++.... ..+++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g~~~~-~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHSSCTT-SCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhhhccc-ccEEEecccCCchhc
Confidence 9999999999999999999999999999999998876533 2344577888999999988655 458899999999999
Q ss_pred CHHHHh--cccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 010888 370 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 447 (498)
Q Consensus 370 d~al~~--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~ 447 (498)
++++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|++++++..++++++..++++.....+..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999998 999999999999999999999999988888888999999999999999999999999998887644322211
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 010888 448 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 479 (498)
Q Consensus 448 ~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~~ 479 (498)
....... ......++.+|+..++....|+..
T Consensus 434 ~~~~~~~-~~~~~~v~~~d~~~al~~~~~s~~ 464 (806)
T 1ypw_A 434 DETIDAE-VMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp HHHCCHH-HHTTCCCCTTHHHHHHHHSCCCCC
T ss_pred hhccchh-hhhhhhhhhhhhhccccccCchhh
Confidence 1100000 001234788999999998887643
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=5.5e-25 Score=220.44 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=133.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHH----HhcCCeEEEEcCccchh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII 323 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a----~~~~p~VL~IDEiD~l~ 323 (498)
..+++++||+||||||||++|+++|++++.+++.++++++.+.+.|..+..++.+|..+ +...|+||||||+|.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 56678999999999999999999999999999999999999999999999999999888 56789999999999998
Q ss_pred hhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcEEEEEEeCCCCCCCHHHHh--cccceeEecCCCHHHH
Q 010888 324 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 391 (498)
Q Consensus 324 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~~~~Pd~~eR 391 (498)
+.+..........+.+.+.|+..+++.. ....+++||+|||.++.+++++++ ||+..++ .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 8654332222234567788999987443 123468899999999999999997 8887675 6799999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHH
Q 010888 392 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 427 (498)
Q Consensus 392 ~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~ 427 (498)
.+|++.++... +.+.+.+++.+.+|++++|..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999887543 567888999999999988864
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=4.6e-21 Score=191.92 Aligned_cols=213 Identities=19% Similarity=0.212 Sum_probs=161.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhc----cCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEecccc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFT----GLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSV 287 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~----~~~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~s~l 287 (498)
+|+|++.+++.+.+.+..+.. +.... ....+..++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998876442 22211 113455689999999999999999999988 348999999999
Q ss_pred chhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC
Q 010888 288 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 367 (498)
Q Consensus 288 ~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~ 367 (498)
.+.+.|.....+..+|..+ .++||||||+|.+...++.. ......++.|+..++.. ..++++|++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~----~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER----DYGQEAIEILLQVMENN---RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc----cccHHHHHHHHHHHhcC---CCCEEEEEeCChHH
Confidence 9999998888888888776 35899999999997554321 12255677788888732 34577888887653
Q ss_pred -----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHh-------cCCcHHHHHHHHHHHHh
Q 010888 368 -----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERT-------EGYSGSDIRLVSKEAAM 434 (498)
Q Consensus 368 -----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-~l~~La~~t-------~g~s~~dL~~L~~~A~~ 434 (498)
.+++++++||...++|+.|+.+++..|++.++.......+. .+..++... ...+.+++..+++.+..
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 25789999999999999999999999999998765544332 244455542 23468999999999998
Q ss_pred HHHHHHHH
Q 010888 435 QPLRRLMV 442 (498)
Q Consensus 435 ~a~rrl~~ 442 (498)
.+..++..
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777664
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.83 E-value=6.4e-23 Score=217.72 Aligned_cols=203 Identities=21% Similarity=0.270 Sum_probs=139.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccccch
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS 289 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~l~~ 289 (498)
.|...|++++|++++++.+...+... .....+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 45677999999999999998876442 22345668999999999999999999999998 9999999999999
Q ss_pred hcccCcHHHHHHHHHHH---HhcCCeEEEEcCccchhhhccccchhhH--HH---------------HHHHHHHHHHhhC
Q 010888 290 KWRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHE--AS---------------RRLKTELLIQMDG 349 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a---~~~~p~VL~IDEiD~l~~~r~~~~~~~~--~~---------------~~i~~~Ll~~ld~ 349 (498)
++.|.++. ++..|..+ +...|+||||||+|.+++++........ .. .++.+.++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 88999998 7788999999999999988754321110 00 0122335555542
Q ss_pred Cc-cCCCcEEEEEEeCCCCCCCHHHHh--cccc--eeEecCCC--HHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 010888 350 LT-QSDELVFVLAATNLPWELDAAMLR--RLEK--RILVPLPD--TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 422 (498)
Q Consensus 350 ~~-~~~~~viVIaaTn~p~~Ld~al~~--Rf~~--~i~~~~Pd--~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~ 422 (498)
.. ..+..++|++|||.++.+++++++ ||+. .++++.|+ .++|.+|++.+.. .+++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 21 234446666899999999999876 9987 56777774 4678877765542 267888888988 8
Q ss_pred HHHHHHHHH
Q 010888 423 SDIRLVSKE 431 (498)
Q Consensus 423 ~dL~~L~~~ 431 (498)
+|+..++..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999988854
No 32
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=3.3e-20 Score=185.01 Aligned_cols=251 Identities=21% Similarity=0.274 Sum_probs=164.5
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhcc--CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hcccC
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 294 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G~ 294 (498)
++++|++++++.+...+..+......... ...++.++||+||||||||++|+++++.++.+++.++++++.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 36999999999999887654332221111 1234578999999999999999999999999999999998765 44443
Q ss_pred -cHHHHHHHHHHH-----HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-------CCCcEEEEE
Q 010888 295 -SEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA 361 (498)
Q Consensus 295 -~~~~l~~~f~~a-----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIa 361 (498)
....++.++..+ ....++||||||+|.+......... ......+++.|+..+++... ....+++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~-~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccccc-chhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 234455555422 1123689999999999876542221 22233457788888875421 223567787
Q ss_pred E----eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc---CCcHHHHHHHHHHHHh
Q 010888 362 A----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTE---GYSGSDIRLVSKEAAM 434 (498)
Q Consensus 362 a----Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~---g~s~~dL~~L~~~A~~ 434 (498)
+ ++.+..+++++++||+..+.+++|+.+++..|++..+.... ..+........ .++...+..+++.+|.
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT----EQYKALMATEGVNIAFTTDAVKKIAEAAFR 249 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHH----HHHHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHH----HHHHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence 7 45677899999999998899999999999999996442100 00011111111 2566677777777764
Q ss_pred -------HHHHHHHHHhhchh-----ccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 435 -------QPLRRLMVLLEGRQ-----EVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 435 -------~a~rrl~~~le~~~-----~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
+++|++.+.++... .....+. ....|+.+|+.+++....
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~--~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMNG--QTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTT--CEEEECHHHHHHHTCSSS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccccC--CEEEEeeHHHHHHHHhhh
Confidence 56676666665432 1111111 112399999999998754
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=1.4e-19 Score=185.48 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=152.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--eEEEEeccccch
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVS 289 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~--~~i~v~~s~l~~ 289 (498)
.|..+|++++|++.+++.+....... .....+++++||+||||||||++|++++++++. +++.+++..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 34556999999999999877654332 112344579999999999999999999999974 888888766432
Q ss_pred hcc-------------------------------------------------cCcHHHHHHHHHHHHh-----c----CC
Q 010888 290 KWR-------------------------------------------------GDSEKLIKVLFELARH-----H----AP 311 (498)
Q Consensus 290 ~~~-------------------------------------------------G~~~~~l~~~f~~a~~-----~----~p 311 (498)
.+. |.....++..+..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 221 1112334444433322 1 26
Q ss_pred eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe-----------CCCCCCCHHHHhcccce
Q 010888 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKR 380 (498)
Q Consensus 312 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT-----------n~p~~Ld~al~~Rf~~~ 380 (498)
+||||||+|.+.. ...+.|+..++.. ..+++++++. |.+..+++++++||..
T Consensus 191 ~vl~IDEi~~l~~-------------~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLDI-------------ESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp CEEEEESGGGSBH-------------HHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-
T ss_pred ceEEEhhccccCh-------------HHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-
Confidence 7999999998843 3456677776532 2235444443 3467899999999966
Q ss_pred eEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCC
Q 010888 381 ILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQI 459 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~ 459 (498)
+.+++|+.+++..+++..+....... +..++.+++.+.+.+++++..+++.|...+.++ ..
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------------------~~ 315 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------------------KG 315 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------------------TC
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------------------CC
Confidence 89999999999999998876544432 223566777776567788888888776655432 11
Q ss_pred CCCCHHHHHHHHhccC
Q 010888 460 GPIRPEDVEIALKNTR 475 (498)
Q Consensus 460 ~~It~eD~~~AL~~~~ 475 (498)
..|+.+|+.+++..+.
T Consensus 316 ~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 316 TEVQVDDIKRVYSLFL 331 (368)
T ss_dssp SSBCHHHHHHHHHHSB
T ss_pred CCCCHHHHHHHHHHhc
Confidence 2499999999998743
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=1.6e-19 Score=183.30 Aligned_cols=196 Identities=15% Similarity=0.134 Sum_probs=141.5
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 289 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~ 289 (498)
....+.+|++++|.+.+++.+...+..... ...+..++||+||||||||++|++++++++.+++.+++..+.
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 345567899999999999999988765321 123456899999999999999999999999999999997663
Q ss_pred hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc---------------CC
Q 010888 290 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SD 354 (498)
Q Consensus 290 ~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---------------~~ 354 (498)
....+...+.. ...+++|||||+|.+... .+..|+..++.... ..
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCC
Confidence 22233333322 345789999999988532 44556666654320 11
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
.++++|++||....+++++++||+..+.+++|+.+++..+++..+.......+ ..++.++..+.| +++++.++++.+.
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVR 231 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 24789999999999999999999889999999999999999988766543322 234455554443 5566666666554
Q ss_pred h
Q 010888 434 M 434 (498)
Q Consensus 434 ~ 434 (498)
.
T Consensus 232 ~ 232 (338)
T 3pfi_A 232 D 232 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=2.8e-19 Score=176.36 Aligned_cols=233 Identities=19% Similarity=0.235 Sum_probs=146.5
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc-hhcccCc
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGDS 295 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~-~~~~G~~ 295 (498)
.+.++|.+...+.+.......... .......++.++||+||||||||++|+++|++++.+++.+++++.. +...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~--l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQ--TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHH--HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHH--HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 456888877766666531111100 0011135668999999999999999999999999999999886532 2111222
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH-HHH
Q 010888 296 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AML 374 (498)
Q Consensus 296 ~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~-al~ 374 (498)
...++.+|..+....+++|||||+|.+...+.... .....+++.|...+++.......++||+|||.++.+++ .++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 35677788888777889999999999976543211 12255677777778776656667889999999888887 677
Q ss_pred hcccceeEecCCCH-HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCC
Q 010888 375 RRLEKRILVPLPDT-EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 453 (498)
Q Consensus 375 ~Rf~~~i~~~~Pd~-~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~ 453 (498)
+||...+.+|.++. ++...++... .. ..+..+..+++.+.|++ |.+++|++.+.++......+
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~~---~~-~~~~~~~~l~~~~~g~~-----------~~g~ir~l~~~l~~a~~~~~- 250 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALELL---GN-FKDKERTTIAQQVKGKK-----------VWIGIKKLLMLIEMSLQMDP- 250 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHH---TC-SCHHHHHHHHHHHTTSE-----------EEECHHHHHHHHHHHTTSCG-
T ss_pred cccceEEcCCCccHHHHHHHHHHhc---CC-CCHHHHHHHHHHhcCCC-----------ccccHHHHHHHHHHHhhhch-
Confidence 89988777766554 4444444331 11 11223444455444431 22346666666655433211
Q ss_pred CCCCCCCCCCHHHHHHHHhccCCC
Q 010888 454 DELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 454 ~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
....+++..++.....+
T Consensus 251 -------~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 251 -------EYRVRKFLALLREEGAS 267 (272)
T ss_dssp -------GGHHHHHHHHHHHTSCC
T ss_pred -------HHHHHHHHHHHHHcCCc
Confidence 14566677766665544
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=2.1e-19 Score=194.65 Aligned_cols=231 Identities=18% Similarity=0.143 Sum_probs=148.5
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-------
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------- 289 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~------- 289 (498)
+++++|++++++.+.+.+.......+ .++.+++|+||||||||++|+++|..++.++..++++.+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 56799999999999877654322111 15678999999999999999999999999999999876543
Q ss_pred --hcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc------------CCC
Q 010888 290 --KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ------------SDE 355 (498)
Q Consensus 290 --~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~------------~~~ 355 (498)
.+.|.....+...|..+....| ||||||+|.+.++++. ..++.|+..++.... ...
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp ----------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred HHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 4555555566666766655554 9999999999765431 134556666653221 114
Q ss_pred cEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcC-----CCCCC---C---CCCHHHHHHHhcC-CcHH
Q 010888 356 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP-----SQTGE---E---SLPYDLLVERTEG-YSGS 423 (498)
Q Consensus 356 ~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~-----~~~~~---~---~~~l~~La~~t~g-~s~~ 423 (498)
++++|+|||.++.+++++++||. .+.++.|+.+++..|++.++. ..... . +..+..++....+ ...+
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred ceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 58899999999999999999994 789999999999999998762 11221 1 1223444543332 4456
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 424 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 424 dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
+|+..+..+...+..+... . . .....|+.+|+.+++...+.
T Consensus 303 ~L~~~i~~~~~~aa~~~~~---~------~---~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 303 SLERQLAAICRKAAKAIVA---E------E---RKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHT---T------C---CSCCEECTTTTHHHHCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHh---c------C---CcceecCHHHHHHHhCCccc
Confidence 6666555554444333221 0 0 11123899999999976543
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=6.9e-18 Score=169.74 Aligned_cols=194 Identities=19% Similarity=0.168 Sum_probs=137.0
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
..+.+|++++|.+..++.+.+.+..... ...++.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 4566899999999999999987754321 1234578999999999999999999999999999999877632
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc---------------cCCCc
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDEL 356 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~ 356 (498)
...+...+.. ....+++|||||+|.+... .+..++..++... ....+
T Consensus 77 ----~~~l~~~l~~-~~~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ----PGDLAAILAN-SLEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ----HHHHHHHHTT-TCCTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ----hHHHHHHHHH-hccCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 2222222221 1245789999999988533 2334444544221 01124
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 433 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~ 433 (498)
+.+|++||.+..+++++.+||...+.+++|+.+++..+++.++.......+ ..++.++..+.| +++++..+++.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 789999999999999999999888999999999999999988765543322 234556666544 4456666555543
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=2e-18 Score=177.44 Aligned_cols=179 Identities=22% Similarity=0.328 Sum_probs=128.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhh---ccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh-cccC
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD 294 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~---~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-~~G~ 294 (498)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.+++.++++++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998885433222111 1123466899999999999999999999999999999999988743 6665
Q ss_pred c-HHHHHHHHHHH----HhcCCeEEEEcCccchhhhccccchhhH-HHHHHHHHHHHHhhCCc-----------------
Q 010888 295 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLT----------------- 351 (498)
Q Consensus 295 ~-~~~l~~~f~~a----~~~~p~VL~IDEiD~l~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~~----------------- 351 (498)
. ...+..++..+ ....++||||||+|.+.+.+........ ..+.+++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 44556666554 3345689999999999887654332222 23458899999998431
Q ss_pred -cCCCcEEEEEEeCCC----------CC-----------------------------------CCHHHHhcccceeEecC
Q 010888 352 -QSDELVFVLAATNLP----------WE-----------------------------------LDAAMLRRLEKRILVPL 385 (498)
Q Consensus 352 -~~~~~viVIaaTn~p----------~~-----------------------------------Ld~al~~Rf~~~i~~~~ 385 (498)
-...++++|+++|.. .. +.+++.+||+..+.+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 012234555565532 11 78999999999999999
Q ss_pred CCHHHHHHHHHH
Q 010888 386 PDTEARRAMFES 397 (498)
Q Consensus 386 Pd~~eR~~IL~~ 397 (498)
|+.+++..|+..
T Consensus 256 l~~~~~~~I~~~ 267 (363)
T 3hws_A 256 LSEEALIQILKE 267 (363)
T ss_dssp CCHHHHHHHHHS
T ss_pred CCHHHHHHHHHH
Confidence 999999999986
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.77 E-value=8.4e-18 Score=177.76 Aligned_cols=220 Identities=22% Similarity=0.267 Sum_probs=149.1
Q ss_pred CCCCCCccccCcHHHH---HHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 212 SPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k---~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
..+.+|++++|++.++ +.|...+... ...++||+||||||||++|+++++.++.+++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 4567899999999999 6777766431 12689999999999999999999999999999987543
Q ss_pred hhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEe-
Q 010888 289 SKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT- 363 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaT- 363 (498)
..+.++.++..+. ...++||||||+|.+... .++.|+..++. . .+++|++|
T Consensus 87 ------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~-~v~lI~att 142 (447)
T 3pvs_A 87 ------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----G-TITFIGATT 142 (447)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----T-SCEEEEEES
T ss_pred ------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----C-ceEEEecCC
Confidence 2334455555444 345799999999998543 23446666663 2 24555555
Q ss_pred -CCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 010888 364 -NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 442 (498)
Q Consensus 364 -n~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~ 442 (498)
|....+++++++|+. .+.++.|+.++...+++..+........ .....++...+..+++. +.+.+|++.+
T Consensus 143 ~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~-------~~~~~i~~~al~~L~~~-~~Gd~R~lln 213 (447)
T 3pvs_A 143 ENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYG-------GQDIVLPDETRRAIAEL-VNGDARRALN 213 (447)
T ss_dssp SCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSST-------TSSEECCHHHHHHHHHH-HCSCHHHHHH
T ss_pred CCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhc-------cccCcCCHHHHHHHHHH-CCCCHHHHHH
Confidence 444579999999995 6889999999999999998765321100 00011455555555555 6677777777
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCCh
Q 010888 443 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 478 (498)
Q Consensus 443 ~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps~ 478 (498)
.++.....+.... .....||.+++.+++....+..
T Consensus 214 ~Le~a~~~a~~~~-~~~~~It~e~v~~~l~~~~~~~ 248 (447)
T 3pvs_A 214 TLEMMADMAEVDD-SGKRVLKPELLTEIAGERSARF 248 (447)
T ss_dssp HHHHHHHHSCBCT-TSCEECCHHHHHHHHTCCCCC-
T ss_pred HHHHHHHhccccc-CCCCccCHHHHHHHHhhhhhcc
Confidence 7776655443110 0113499999999998776544
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=8.7e-17 Score=150.93 Aligned_cols=202 Identities=18% Similarity=0.189 Sum_probs=136.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~ 286 (498)
.++..|++++|.++.++.+.+.+... ...+++|+||||||||++++++++++ ...++.++++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 45678999999999999999887431 22359999999999999999999986 45688888765
Q ss_pred cchhcccCcHHHHHHHHHHHH------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEE
Q 010888 287 VVSKWRGDSEKLIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 360 (498)
..+ ...+...+.... ...+.+|+|||+|.+... ..+.++..++. ....+.+|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~---~~~~~~~i 136 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFI 136 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHh---cCCCCeEE
Confidence 432 122222222221 245789999999988532 23445555543 23346788
Q ss_pred EEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 361 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 361 aaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
++||.+..+++++.+||. .+.+++|+.++...+++.++.......+ ..+..++..+ .++.++
T Consensus 137 ~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----------------~g~~r~ 199 (226)
T 2chg_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS----------------GGDFRK 199 (226)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH----------------TTCHHH
T ss_pred EEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------------CCCHHH
Confidence 899999999999999996 7999999999999999987754332211 1233344333 333444
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
+.+.++...... ..|+.+|+++++.
T Consensus 200 l~~~l~~~~~~~--------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 200 AINALQGAAAIG--------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTC--------SCBCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------ceecHHHHHHHhc
Confidence 444333332211 2499999999886
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.74 E-value=5.2e-17 Score=171.48 Aligned_cols=223 Identities=16% Similarity=0.235 Sum_probs=145.9
Q ss_pred CCCCCCCcccc-Cc--HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEE
Q 010888 211 GSPDVKWESIK-GL--ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 282 (498)
Q Consensus 211 ~~~~~~~~~Iv-G~--~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v 282 (498)
-.+..+|++++ |. ..+...+......+ .. ..+++|+||||||||++|+++++++ +.+++++
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 34667899988 53 33444444443221 11 4689999999999999999999988 8889999
Q ss_pred eccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 283 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 283 ~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
++.++...+.+.........|.......+.+|||||++.+.... ..+..++..++..... +..+|+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~-~~~iIitt 234 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDS-GKQIVICS 234 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 99877554432221111112333323367999999999986431 1233444444433222 23445555
Q ss_pred eCCCCC---CCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 010888 363 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQP 436 (498)
Q Consensus 363 Tn~p~~---Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~L~~~A~~~a 436 (498)
.+.+.. +++++++||. ..+.+++|+.++|..+++..+....... +..+..++..+.| +.+++..+++.+...+
T Consensus 235 ~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp SSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 555544 8899999996 6789999999999999999876544432 3336667777664 7778877777665543
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 437 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 437 ~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
.. . ..+|+.+++.++++...+
T Consensus 314 ~~------~-------------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 314 ET------T-------------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HH------S-------------SSCCCHHHHHHHTSTTTC
T ss_pred HH------h-------------CCCCCHHHHHHHHHHHhh
Confidence 21 0 123889999998887764
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.74 E-value=1.4e-17 Score=167.92 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=117.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 290 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~ 290 (498)
..++.+|++++|++.+++.+.+.+.. ...++.+|++||||||||++|++++++++.+++++++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 35678899999999999999988752 23346788899999999999999999999999999987642
Q ss_pred cccCcHHHHHHHHHHHHhc-----CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 291 WRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 291 ~~G~~~~~l~~~f~~a~~~-----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
...++..+...... .+.||+|||+|.+.+ ....+.|+..++.. ...+.+|++||.
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~---~~~~~iI~~~n~ 145 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY---SSNCSIIITANN 145 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH---GGGCEEEEEESS
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC---CCCcEEEEEeCC
Confidence 23344434333222 568999999999851 11344566666532 234678889999
Q ss_pred CCCCCHHHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 366 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 366 p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
+..+++++++||. .+.++.|+.+++..|++.++
T Consensus 146 ~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 146 IDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp GGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence 9999999999994 69999999999877766553
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=6.9e-17 Score=163.14 Aligned_cols=198 Identities=22% Similarity=0.235 Sum_probs=131.1
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 212 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 212 ~~~~~~~~Iv-G--~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.+..+|++++ | ...+...+...+..+ ...+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4678899997 4 445556666554332 1234689999999999999999999998 8999999998
Q ss_pred ccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC
Q 010888 286 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 365 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~ 365 (498)
++...+.+.........|.... ..+++|||||++.+..+. ..+..++..++.....+ ..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~~~~~-~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTLYLLE-KQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-----------HHHHHHHHHHHHHHHCC-CeEEEEecCC
Confidence 8765544332221112222222 247899999999986431 12233334433222222 3566666666
Q ss_pred CC---CCCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 010888 366 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 435 (498)
Q Consensus 366 p~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~~ 435 (498)
+. .+++++.+||. ..+.+++ +.+++..+++..+.......+ ..++.++..+ .+.+++..++..+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 65 68999999996 5678888 999999999998865544322 2356677777 4566777666655443
No 44
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.72 E-value=2e-16 Score=166.03 Aligned_cols=177 Identities=24% Similarity=0.341 Sum_probs=132.2
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccC--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccch-hcccC
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 294 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~-~~~G~ 294 (498)
++|+|++++|+.+...+..+.+++..+... ..+++++||+||||||||++|+++|+.++.+++.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 478999999999999887766555544433 235688999999999999999999999999999999988877 47774
Q ss_pred -cHHHHHHHHHHHH------------------------------------------------------------------
Q 010888 295 -SEKLIKVLFELAR------------------------------------------------------------------ 307 (498)
Q Consensus 295 -~~~~l~~~f~~a~------------------------------------------------------------------ 307 (498)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 5666655554330
Q ss_pred ------------------------------------------------------------------------h-cCCeEE
Q 010888 308 ------------------------------------------------------------------------H-HAPSTI 314 (498)
Q Consensus 308 ------------------------------------------------------------------------~-~~p~VL 314 (498)
. ...++|
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0 023589
Q ss_pred EEcCccchhhhccccchhhHHH-HHHHHHHHHHhhCCcc-------CCCcEEEEEEe----CCCCCCCHHHHhcccceeE
Q 010888 315 FLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRIL 382 (498)
Q Consensus 315 ~IDEiD~l~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~~~-------~~~~viVIaaT----n~p~~Ld~al~~Rf~~~i~ 382 (498)
++||+|++...... ...+.+ ..++..||..+++... ...+|++|+|. +.|.++.|++++||...+.
T Consensus 255 ~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~ 332 (444)
T 1g41_A 255 FIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 332 (444)
T ss_dssp EEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred eHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeee
Confidence 99999999865331 122333 3477889999997421 34568888887 3455577999999999999
Q ss_pred ecCCCHHHHHHHHH
Q 010888 383 VPLPDTEARRAMFE 396 (498)
Q Consensus 383 ~~~Pd~~eR~~IL~ 396 (498)
++.++.++...|+.
T Consensus 333 l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 333 LTALSAADFERILT 346 (444)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999995
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.72 E-value=4e-16 Score=159.71 Aligned_cols=226 Identities=20% Similarity=0.181 Sum_probs=149.1
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEe
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNIS 283 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~ 283 (498)
+....++++|.+..++.+.+.+...+. ...+.+++|+||||||||++++++++++ +.++++++
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 445568999999999999987643221 2345789999999999999999999988 88899999
Q ss_pred ccccchh----------------cccCcH-HHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHH
Q 010888 284 ASSVVSK----------------WRGDSE-KLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 345 (498)
Q Consensus 284 ~s~l~~~----------------~~G~~~-~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~ 345 (498)
|...... ..|... .....++..... ..|.+|+|||+|.+...+ .....+..++.
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~ 157 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITR 157 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhh
Confidence 8754321 112222 234444444433 347899999999986432 01233344444
Q ss_pred HhhCCccCCCcEEEEEEeCCC---CCCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCC--CCCC-CCCCHHHHHHHhc
Q 010888 346 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS--QTGE-ESLPYDLLVERTE 418 (498)
Q Consensus 346 ~ld~~~~~~~~viVIaaTn~p---~~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~--~~~~-~~~~l~~La~~t~ 418 (498)
.++.... ..++.+|++||.+ ..+++++.+||.. .+.+++|+.++...+++..+.. .... .+..++.+++.+.
T Consensus 158 ~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 158 INQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred chhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 4432210 3457788899887 6789999999975 7999999999999999988753 1122 2334566677666
Q ss_pred ---CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 419 ---GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 419 ---g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
| .++.+..+++.++..+..+ + ...|+.+|+..++...
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~------~------------~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERR------R------------EERVRREHVYSARAEI 276 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHT------T------------CSCBCHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHc------C------------CCCcCHHHHHHHHHHH
Confidence 4 4556666777665543221 0 0237888888877665
No 46
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.72 E-value=1.2e-17 Score=153.19 Aligned_cols=160 Identities=21% Similarity=0.337 Sum_probs=115.1
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI 282 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v 282 (498)
++..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 456799999999999998887632 234689999999999999999999986 7889999
Q ss_pred eccccc--hhcccCcHHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 283 SASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 283 ~~s~l~--~~~~G~~~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
++..+. ..+.+.....+..++..+. ...+.||+|||+|.+......... ..+.+.+...++ ...+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-----~~~~~~l~~~~~-----~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-----MDAGNMLKPALA-----RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C-----CCCHHHHHHHHH-----TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch-----HHHHHHHHHhhc-----cCCeEE
Confidence 987765 2344555566677776553 355789999999999754321100 111222333332 123567
Q ss_pred EEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHH
Q 010888 360 LAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 360 IaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL 395 (498)
|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888775 68999999997 6999999999998765
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.72 E-value=2.5e-16 Score=150.42 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=135.4
Q ss_pred CCCCCccccCc---HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 213 PDVKWESIKGL---ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 213 ~~~~~~~IvG~---~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
+..+|++++|. +.+.+.+...+.. ....+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45789999972 4666666665432 234789999999999999999999987 47889999887
Q ss_pred cchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 287 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+........ . ....+.+|+|||+|.+.... .....++..++.........+|++++..+
T Consensus 91 ~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTALL--------E--GLEQFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGGG--------T--TGGGSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHHH--------H--hccCCCEEEEeccccccCCH-----------HHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 765432111 1 11346899999999885431 11233444433322222222444444444
Q ss_pred C---CCCHHHHhccc--ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 010888 367 W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 367 ~---~Ld~al~~Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl 440 (498)
. .+++++.+||. ..+.++.|+.+++.++++.++.......+ ..++.+++.+.| +.+++..+++.+...+..+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~- 227 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH- 227 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-
Confidence 3 45689999986 78999999999999999998865444322 234556666654 6667777666665543221
Q ss_pred HHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 441 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 441 ~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
...|+.+|++++++
T Consensus 228 ------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ------------------TCCCCHHHHHHHHT
T ss_pred ------------------CCCCcHHHHHHHhh
Confidence 12399999999885
No 48
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=6e-17 Score=161.91 Aligned_cols=207 Identities=22% Similarity=0.259 Sum_probs=137.7
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc---
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 291 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~--- 291 (498)
++++|++.+++.+...+....... .....+..++||+||||||||++|+++|+.+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 368899999999998876532110 1112344689999999999999999999998 5679999998764321
Q ss_pred --ccCcH-----HHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc--------CCCc
Q 010888 292 --RGDSE-----KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDEL 356 (498)
Q Consensus 292 --~G~~~-----~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~ 356 (498)
.|... .....+........++||||||+|.+.+ .+++.|+..++.... .-.+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 11000 0001223333444568999999998843 355667777764321 1135
Q ss_pred EEEEEEeCC--------------------------CCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC-------
Q 010888 357 VFVLAATNL--------------------------PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT------- 403 (498)
Q Consensus 357 viVIaaTn~--------------------------p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~------- 403 (498)
+++|+|||. ...+++++.+||+..+.+++|+.+++..|++.++....
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 779999998 34688999999999999999999999999998875421
Q ss_pred CC---CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHH
Q 010888 404 GE---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 404 ~~---~~~~l~~La~~t~--g~s~~dL~~L~~~A~~~a~rrl 440 (498)
.. .+..++.+++..- ..+.++|+.+++.+...++.+.
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 11 1122344554433 4566777777777666655543
No 49
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=9.3e-17 Score=165.70 Aligned_cols=179 Identities=21% Similarity=0.327 Sum_probs=116.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchh------------------hccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~------------------~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
.|+|++.+++.|...+......... ......++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999887433222211 1122345678999999999999999999999999999
Q ss_pred EEeccccc-hhcccCc-HHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhH-HHHHHHHHHHHHhhCCc--
Q 010888 281 NISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLT-- 351 (498)
Q Consensus 281 ~v~~s~l~-~~~~G~~-~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~~-- 351 (498)
.+++..+. ..+.|.. ...+...+..+. ...++||||||+|.+...+.......+ ....+++.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444432 344455544322 235789999999999876432111111 11236788888888531
Q ss_pred ----------------cCCCcEEEEEEeCC-----------------------------------------CCCCCHHHH
Q 010888 352 ----------------QSDELVFVLAATNL-----------------------------------------PWELDAAML 374 (498)
Q Consensus 352 ----------------~~~~~viVIaaTn~-----------------------------------------p~~Ld~al~ 374 (498)
....++++|+++|. ...+.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01134567777762 113578889
Q ss_pred hcccceeEecCCCHHHHHHHHHH
Q 010888 375 RRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 375 ~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
+||+..+.|++++.++...|+..
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCCceeeccCCCHHHHHHHHhh
Confidence 99988899999999999988874
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=2.6e-16 Score=149.27 Aligned_cols=204 Identities=22% Similarity=0.252 Sum_probs=140.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe-------------
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 278 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------- 278 (498)
..+..|++++|.+..++.+.+.+.. ...+..++|+||||||||+++++++++++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 4567799999999999999988743 1233579999999999999999999987432
Q ss_pred -----------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHH
Q 010888 279 -----------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 343 (498)
Q Consensus 279 -----------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~L 343 (498)
++.++... ......++.++..+. ...+.+|+|||+|.+.. ...+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-------------~~~~~l 146 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNAL 146 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHHHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-------------HHHHHH
Confidence 22222211 112233444444432 23478999999998732 234556
Q ss_pred HHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcH
Q 010888 344 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSG 422 (498)
Q Consensus 344 l~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~ 422 (498)
+..++.. ...+.+|++||.+..+++.+.+|+ ..+.+++|+.++..++++.++....... +..++.+++.+.| ++
T Consensus 147 ~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 147 LKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 6666532 345778889998888999999997 6789999999999999998876543332 2235667777766 66
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 423 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 423 ~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
+.+..+++.+... . . ..|+.+|+++++.
T Consensus 222 ~~~~~~~~~~~~~---------------~--~-----~~i~~~~v~~~~~ 249 (250)
T 1njg_A 222 RDALSLTDQAIAS---------------G--D-----GQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHHTT---------------T--T-----SSBCHHHHHHHSC
T ss_pred HHHHHHHHHHHhc---------------c--C-----ceecHHHHHHHhC
Confidence 7777766655321 0 0 1399999998864
No 51
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=2e-17 Score=162.18 Aligned_cols=198 Identities=20% Similarity=0.186 Sum_probs=124.3
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEeccccchhc
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW 291 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l~~~~ 291 (498)
.+|++++|.+..++.+.+.+.... ..+.++||+||||||||++|+++++.+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 578999999999998887765422 2346899999999999999999999884 789999998764321
Q ss_pred -----ccCcHHH-------HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------
Q 010888 292 -----RGDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------- 351 (498)
Q Consensus 292 -----~G~~~~~-------l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------- 351 (498)
.|..... ....+.. ..+++|||||+|.+... .+..|+..++...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence 1111000 0112222 23579999999988543 3445566655211
Q ss_pred cCCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHH----HHHHHhcCCCCCCCCCCHHHHHHHh---
Q 010888 352 QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERT--- 417 (498)
Q Consensus 352 ~~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~----~IL~~~l~~~~~~~~~~l~~La~~t--- 417 (498)
....++.+|+|||.+ ..+.+++.+||.. +.+.+|+..+|. .++++++.. +++..
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~-----------~~~~~~~~ 204 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQ-----------MCREIKLP 204 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHH-----------HHHHTTCS
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHH-----------HHHHhCCC
Confidence 112346788999885 2478899999954 566666665543 333333321 12111
Q ss_pred --cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhcc
Q 010888 418 --EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 450 (498)
Q Consensus 418 --~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~ 450 (498)
..++...+..+....|.+++|++.+.++.....
T Consensus 205 ~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 205 LFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp SCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 246777888888888899999888887766543
No 52
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=6.4e-16 Score=158.67 Aligned_cols=214 Identities=20% Similarity=0.191 Sum_probs=139.2
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----------CCeEEEEecc
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISAS 285 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----------~~~~i~v~~s 285 (498)
.++++|.++.++.+.+.+..... ...+++++|+||||||||++|+++++++ +.+++.++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 47899999999999987754332 2344689999999999999999999988 8999999987
Q ss_pred ccc-hh----------c-------ccC-cHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHH-HHHHHH
Q 010888 286 SVV-SK----------W-------RGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLI 345 (498)
Q Consensus 286 ~l~-~~----------~-------~G~-~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i-~~~Ll~ 345 (498)
... .. . .+. ....+..++..+.... .+|+|||+|.+..... ... +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~---------~~~~l~~l~- 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG---------GDIVLYQLL- 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT---------SHHHHHHHH-
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC---------CceeHHHHh-
Confidence 543 10 0 111 1233444454444444 3999999999864321 011 22222
Q ss_pred HhhCCccCCCcEEEEEEeCCC---CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC--CC-CCCCHHHHHHHhcC
Q 010888 346 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT--GE-ESLPYDLLVERTEG 419 (498)
Q Consensus 346 ~ld~~~~~~~~viVIaaTn~p---~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~--~~-~~~~l~~La~~t~g 419 (498)
+.. .++.+|++||.+ ..+++++.+||...+.+++|+.++...+++.++.... .. .+..++.+++.+.+
T Consensus 160 --~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 160 --RSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp --TSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred --cCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 211 457888899887 6789999999977999999999999999998875211 11 12224445555441
Q ss_pred --CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 420 --YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 420 --~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
-+.+.+..+++.++.. +.. ...|+.+|+..++....
T Consensus 234 ~~G~~r~a~~~l~~a~~~---------------a~~-----~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQL---------------ASG-----GGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCCHHHHHHHHHHHHHH---------------TTS-----SSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH---------------hcC-----CCccCHHHHHHHHHHHh
Confidence 1222333333333321 111 12388999988887754
No 53
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.69 E-value=1.9e-17 Score=166.57 Aligned_cols=208 Identities=20% Similarity=0.278 Sum_probs=139.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc---
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 291 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~--- 291 (498)
++++|.+..++.+.+.+... ...+.+|||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46899999999998877542 2345789999999999999999999976 6799999998764321
Q ss_pred --cc----CcHH---HHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCC
Q 010888 292 --RG----DSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 354 (498)
Q Consensus 292 --~G----~~~~---~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 354 (498)
.| .... .....+..+. +++|||||+|.+... .+..|+..++... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence 11 1110 1123344443 479999999998543 4455666666432 112
Q ss_pred CcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH----hcC
Q 010888 355 ELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER----TEG 419 (498)
Q Consensus 355 ~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~~l~~La~~----t~g 419 (498)
.++.||++||.+ ..+.+.+..||. .+.+.+|+..+|.+ ++++++.. ++.. ...
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~-----------~~~~~~~~~~~ 203 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRR-----------FAERNRKVVKG 203 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHH-----------HHHHTTCCCCC
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHH-----------HHHHhccCccC
Confidence 357889999986 236778888885 56666776665543 44444321 1121 135
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHH
Q 010888 420 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 469 (498)
Q Consensus 420 ~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~ 469 (498)
++...+..+.++.|++++|++.+.++......... .|+.+|+..
T Consensus 204 ~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~~~------~i~~~~l~~ 247 (304)
T 1ojl_A 204 FTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGE------YISERELPL 247 (304)
T ss_dssp BCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCSS------SBCGGGSCG
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCC------cccHHhhhh
Confidence 78888888999999999999999888776554432 255565543
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.68 E-value=2.1e-16 Score=168.12 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=129.9
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 275 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------- 275 (498)
.++.....+.++++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 168 ~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 235 (468)
T 3pxg_A 168 RDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (468)
T ss_dssp CBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred HHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 3344445567899999999999999887643 234689999999999999999999997
Q ss_pred CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC
Q 010888 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 355 (498)
Q Consensus 276 ~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 355 (498)
+.+++.++++ +.+.|..+..++.++..+....++||||| .. ....+.|+..++ .+
T Consensus 236 ~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L~-----~g 290 (468)
T 3pxg_A 236 DKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA-----RG 290 (468)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----SS
T ss_pred CCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhhc-----CC
Confidence 7889999887 67778777888999999998889999999 10 112223333332 23
Q ss_pred cEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-----CCCHHHHHHHhcCCc----
Q 010888 356 LVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVERTEGYS---- 421 (498)
Q Consensus 356 ~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-----~~~l~~La~~t~g~s---- 421 (498)
.+.+|++||.+. .+++++++||. .+.++.|+.+++..||+.++....... +..+..++..+.+|.
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~ 369 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCc
Confidence 478899999886 68999999996 599999999999999999886632221 222445555544433
Q ss_pred -HHHHHHHHHHHH
Q 010888 422 -GSDIRLVSKEAA 433 (498)
Q Consensus 422 -~~dL~~L~~~A~ 433 (498)
+.....+++.|.
T Consensus 370 lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 370 LPDKAIDLIDEAG 382 (468)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 345555665554
No 55
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=7.6e-16 Score=156.27 Aligned_cols=234 Identities=17% Similarity=0.205 Sum_probs=134.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------e-----
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------T----- 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~-------~----- 278 (498)
..++.+|++++|.+++++.+...... ....++||+||||||||++|+++++.++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVD------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHC------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhC------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 34678899999999988776544322 12246999999999999999999999863 1
Q ss_pred ---------------------EEEEeccccchhcccCcHHHHHHHHHHH---------HhcCCeEEEEcCccchhhhccc
Q 010888 279 ---------------------FFNISASSVVSKWRGDSEKLIKVLFELA---------RHHAPSTIFLDEIDAIISQRGE 328 (498)
Q Consensus 279 ---------------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a---------~~~~p~VL~IDEiD~l~~~r~~ 328 (498)
++.+..........|... +...+... ....+++|||||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH---
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH---
Confidence 222111111111111100 01111111 1113689999999988543
Q ss_pred cchhhHHHHHHHHHHHHHhhC----Ccc------CCCcEEEEEEeCCCC-CCCHHHHhcccceeEecCC-CHHHHHHHHH
Q 010888 329 ARSEHEASRRLKTELLIQMDG----LTQ------SDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFE 396 (498)
Q Consensus 329 ~~~~~~~~~~i~~~Ll~~ld~----~~~------~~~~viVIaaTn~p~-~Ld~al~~Rf~~~i~~~~P-d~~eR~~IL~ 396 (498)
.++.|+..++. +.. ...++++|+|||... .+++++++||...+.++.| +.+++..|++
T Consensus 160 ----------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 160 ----------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp ----------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred ----------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 34455555542 111 112588999999744 7999999999888999998 6777888887
Q ss_pred HhcCCCCCCC------CCC----HHHHH---HHh--cCCcHHHHHHHHHHHHhHH---HHHHHHHhhchhccCCCCCCCC
Q 010888 397 SLLPSQTGEE------SLP----YDLLV---ERT--EGYSGSDIRLVSKEAAMQP---LRRLMVLLEGRQEVAPDDELPQ 458 (498)
Q Consensus 397 ~~l~~~~~~~------~~~----l~~La---~~t--~g~s~~dL~~L~~~A~~~a---~rrl~~~le~~~~~~~~~~~~~ 458 (498)
..+....... ... ...+. ... -.++...+..+++.++... .|++.+.++.+...+.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~-- 307 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA-- 307 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC--
Confidence 7532110000 000 00110 001 1356666666666666522 35555555443322211111
Q ss_pred CCCCCHHHHHHHHhcc
Q 010888 459 IGPIRPEDVEIALKNT 474 (498)
Q Consensus 459 ~~~It~eD~~~AL~~~ 474 (498)
..|+.+|+..++..+
T Consensus 308 -~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 308 -TAVGRDHLKRVATMA 322 (350)
T ss_dssp -SBCCHHHHHHHHHHH
T ss_pred -CcCCHHHHHHHHHHH
Confidence 128999999998764
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.8e-15 Score=153.53 Aligned_cols=212 Identities=15% Similarity=0.135 Sum_probs=139.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------CeEEEEec
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------TTFFNISA 284 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~------~~~i~v~~ 284 (498)
..++.+|++++|++++++.+...+.. ....++||+||||||||++|+++++.++ ..++.+++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 35677899999999999999887632 1123499999999999999999999864 46888888
Q ss_pred cccchhcccCcHHHHHHHHHHHH----------------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 285 SSVVSKWRGDSEKLIKVLFELAR----------------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a~----------------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
++..+ ...++..+.... ...+.||+|||+|.+.+. ..+.|+..++
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll~~le 158 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTME 158 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHH
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHHHHHH
Confidence 76421 111222111111 124569999999988542 3355666665
Q ss_pred CCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHH
Q 010888 349 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRL 427 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~s~~dL~~ 427 (498)
... ....+|.+||.+..+.+++++|+. .+.+++|+.++...+++..+....... +..++.+++.+.|. .+.+.+
T Consensus 159 ~~~---~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~ 233 (353)
T 1sxj_D 159 TYS---GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGIT 233 (353)
T ss_dssp HTT---TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHH
T ss_pred hcC---CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHH
Confidence 332 235567788999999999999995 789999999999999998875544332 22355666666653 334444
Q ss_pred HHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 428 VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 428 L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
+++.++..+-+. . ....|+.+|+..++....
T Consensus 234 ~l~~~~~~~~~~------~-----------~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 234 LLQSASKGAQYL------G-----------DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHTHHHHHHH------C-----------SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHhcCCC------c-----------cCccccHHHHHHHhCCCC
Confidence 444433321110 0 001388888888777443
No 57
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=4.9e-16 Score=155.14 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=117.6
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~ 284 (498)
...++.+|++++|++.+++.+.+.+.. ....++||+||||||||++|+++++++ +.+++.+++
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 345678899999999999988876532 112349999999999999999999987 346788888
Q ss_pred cccchhcccCcHHHHHHHHHHH--HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 285 SSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
++..+. ......+....... ....+.||+|||+|.+... ..+.|+..++. ....+.+|++
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i~~ 138 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFILS 138 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSS---SSSSEEEEEE
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeEEEE
Confidence 765321 11222222221110 0144789999999988532 33445555543 3345778889
Q ss_pred eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCC
Q 010888 363 TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 404 (498)
Q Consensus 363 Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~ 404 (498)
||.+..+.+++.+|+. .+.+++|+.++...+++..+.....
T Consensus 139 ~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~ 179 (319)
T 2chq_A 139 CNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV 179 (319)
T ss_dssp ESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCC
T ss_pred eCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999995 7999999999999999988765544
No 58
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=1.4e-15 Score=153.90 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=109.5
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc------cc
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VV 288 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~------l~ 288 (498)
..+++++|++++++.+...+.. ..++||+||||||||++|+++++.++.+++.+++.. +.
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3457899999999988876532 258999999999999999999999999999998741 11
Q ss_pred hhcccCcHHHHHHHHHHHHhcC---CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcE
Q 010888 289 SKWRGDSEKLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 357 (498)
Q Consensus 289 ~~~~G~~~~~l~~~f~~a~~~~---p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~v 357 (498)
+...-... ...+. .... .+||||||+|.+.+. .++.|+..++... ....++
T Consensus 90 g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 90 GTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp EEEEEETT---TTEEE--EEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred CceeecCC---CCceE--eccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 11110000 00000 0011 279999999987432 4455565555321 123357
Q ss_pred EEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC
Q 010888 358 FVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 358 iVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
++|+|+|... .+++++++||...+.++.|+.+++.+|++..+...
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 7888888543 38999999998789999999999999999887653
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=6.8e-16 Score=173.38 Aligned_cols=226 Identities=23% Similarity=0.290 Sum_probs=155.0
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 283 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~ 283 (498)
+.+|++++|.++.++.+.+.+.. ....++||+||||||||++|+++++.+ +..++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 45799999999999998887632 245789999999999999999999987 67788888
Q ss_pred ccccc--hhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEE
Q 010888 284 ASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 361 (498)
Q Consensus 284 ~s~l~--~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIa 361 (498)
++.+. ..+.|..+..++.++..+....++||||||+|.+.+........ ....+ .+..+... ..+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~----~~~~~----~L~~~l~~-~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAAN----LIKPLLSS-GKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH----HHHHH----HHSSCSSS-CCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch----HHHHH----HHHHHHhC-CCeEEEE
Confidence 87776 46788899999999999988788999999999998764432111 11222 22222222 3467788
Q ss_pred EeCCC-----CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC----CCC-CCCCHHHHHHHhcC-----CcHHHHH
Q 010888 362 ATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----TGE-ESLPYDLLVERTEG-----YSGSDIR 426 (498)
Q Consensus 362 aTn~p-----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~----~~~-~~~~l~~La~~t~g-----~s~~dL~ 426 (498)
+||.+ ..+++++.+||. .+.++.|+.+++..|++.++... ... .+..+..++..+.+ +.+..+.
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 88764 357889999997 69999999999999999876431 111 12224445554433 4555666
Q ss_pred HHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 427 LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 427 ~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
.++.+|.... ++ . +. ......++.+|+..++....
T Consensus 400 ~lld~a~~~~--~~----~------~~--~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARA--RL----M------PV--SKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHH--HH----S------SS--CCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHH--hc----c------cc--cccCCccCHHHHHHHHHHhc
Confidence 6666654321 11 0 00 01113489999999998753
No 60
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=5.7e-16 Score=166.72 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=123.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccC-chhhccC----CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~-~~~~~~~----~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
..++.+|++|+|.+.+++.+.+++...... +..+... ..+.+++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 456779999999999999999988653211 1112111 12457999999999999999999999999999999998
Q ss_pred ccchhcccCcH-------HHHHHHHHHH-----HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccC
Q 010888 286 SVVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 353 (498)
Q Consensus 286 ~l~~~~~G~~~-------~~l~~~f~~a-----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 353 (498)
++......... ..+..+|..+ ....+.||||||+|.+....+. ....++..++. .
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~----------~l~~L~~~l~~---~ 178 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCRK---T 178 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHHH---C
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH----------HHHHHHHHHHh---c
Confidence 77543211000 0011222222 2245789999999999754221 23344444442 2
Q ss_pred CCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcC
Q 010888 354 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEG 419 (498)
Q Consensus 354 ~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~~l~~La~~t~g 419 (498)
..++++++++.....+. .+.+|+ ..+.|+.|+.+++..+++..+...... .+..+..+++.+.|
T Consensus 179 ~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 179 STPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp SSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 23344444433333444 344454 679999999999999998876544433 23346667776654
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=7.4e-16 Score=173.18 Aligned_cols=202 Identities=17% Similarity=0.194 Sum_probs=138.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccC
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD 294 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~ 294 (498)
++++|++.+++.+.+.+....... .....|..++||+||||||||++|+++|+.+ +.+++.++|+++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 568999999999998876532110 1112333479999999999999999999998 7899999999998776544
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCCCcEEEEEEeCCC
Q 010888 295 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 366 (498)
Q Consensus 295 ~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~viVIaaTn~p 366 (498)
...+....+...++||||||+|.+.+ .+++.|+..++.-. ....++++|+|||.+
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP-------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH-------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH-------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 12233344556678999999998743 36677777776421 123457899999976
Q ss_pred CC------------CCHHHHhcccceeEecCCCHHHHHHHHHHhcCCC-------CCC---CCCCHHHHHHH--hcCCcH
Q 010888 367 WE------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE---ESLPYDLLVER--TEGYSG 422 (498)
Q Consensus 367 ~~------------Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~---~~~~l~~La~~--t~g~s~ 422 (498)
.. +.|++++||+..+.|++|+.+++..|++..+... ... .+..++.|++. ...+..
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 54 7899999999899999999999999998876432 111 11123334432 123456
Q ss_pred HHHHHHHHHHHhHHHHH
Q 010888 423 SDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 423 ~dL~~L~~~A~~~a~rr 439 (498)
++|+.+++++....+.+
T Consensus 711 R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp TTHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 67777777666655544
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=4.4e-15 Score=151.73 Aligned_cols=224 Identities=18% Similarity=0.176 Sum_probs=144.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCeEEEEeccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASS 286 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------~~~~i~v~~s~ 286 (498)
+....++++|.+..++.+.+.+...+. ...+..++|+||||||||++++++++.+ +.+++++++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 455668999999999999887643221 2345689999999999999999999988 88999999764
Q ss_pred cch------h----------cccC-cHHHHHHHHHHHHhcC-CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 287 VVS------K----------WRGD-SEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 287 l~~------~----------~~G~-~~~~l~~~f~~a~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
... . ..+. .......++....... |.+|+|||++.+..... ......++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchh
Confidence 321 0 1122 2233444554444433 89999999999865421 123455666665
Q ss_pred CCccCCCcEEEEEEeCCC---CCCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCCCCC--C-CCCCHHHHHHHhc---
Q 010888 349 GLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTG--E-ESLPYDLLVERTE--- 418 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p---~~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~~~~--~-~~~~l~~La~~t~--- 418 (498)
.. ...++.+|++|+.+ ..+++.+.+||.. .+.+++++.++..++++..+..... . .+..+..++..+.
T Consensus 158 ~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 158 EV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp SC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred hc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 43 33457788888876 4578889999863 7999999999999999987643211 1 1122344555554
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 010888 419 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 474 (498)
Q Consensus 419 g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~ 474 (498)
| +++.+..+++.++..+..+ + ...|+.+|+..++...
T Consensus 236 G-~~r~~~~ll~~a~~~a~~~------~------------~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAERM------K------------DTKVKEEYVYMAKEEI 272 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHHT------T------------CSSCCHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhc------C------------CCccCHHHHHHHHHHH
Confidence 4 3444555666655433211 0 0127777777766554
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=5.4e-16 Score=141.95 Aligned_cols=152 Identities=24% Similarity=0.365 Sum_probs=108.9
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 283 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~ 283 (498)
+..|++++|.+...+.+.+.+.. ....+++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 56789999999998888887632 234689999999999999999999987 78899998
Q ss_pred ccccch--hcccCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEE
Q 010888 284 ASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 360 (498)
Q Consensus 284 ~s~l~~--~~~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVI 360 (498)
+..+.. .+.+.....+..++..+... .|.+|+|||+|.+.+.+....... .+.+.+...++ ...+++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~----~~~~~l~~~~~-----~~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGAL----DAGNILKPMLA-----RGELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSC----CTHHHHHHHHH-----TTCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccch----HHHHHHHHHHh-----cCCeeEE
Confidence 876653 23444555667777666554 678999999999975433111111 12233333333 1336688
Q ss_pred EEeCCCC-----CCCHHHHhcccceeEecCCC
Q 010888 361 AATNLPW-----ELDAAMLRRLEKRILVPLPD 387 (498)
Q Consensus 361 aaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd 387 (498)
++||.+. .+++++++||.. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 8888764 689999999974 8888885
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=8.8e-16 Score=172.54 Aligned_cols=191 Identities=20% Similarity=0.282 Sum_probs=131.3
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------
Q 010888 206 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 275 (498)
Q Consensus 206 ~~~~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---------- 275 (498)
.++.....+.++++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 168 ~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~ 235 (758)
T 3pxi_A 168 RDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (758)
T ss_dssp CBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred HHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3333445567899999999999999987643 234689999999999999999999997
Q ss_pred CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCC
Q 010888 276 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 355 (498)
Q Consensus 276 ~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 355 (498)
+.+++.+++ ..++.|..+..++.++..+....|+||||| .. ....+.|+..++ ..
T Consensus 236 ~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~-----~~ 290 (758)
T 3pxi_A 236 DKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA-----RG 290 (758)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----SS
T ss_pred CCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh-----cC
Confidence 788888887 556788888899999999998889999999 00 112233333332 33
Q ss_pred cEEEEEEeCCCC-----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCC-----HHHHHHHh-----cCC
Q 010888 356 LVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-----YDLLVERT-----EGY 420 (498)
Q Consensus 356 ~viVIaaTn~p~-----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~-----l~~La~~t-----~g~ 420 (498)
.+.+|++||... .+++++++|| ..+.++.|+.+++..||+.++.......... +..++..+ .++
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~ 369 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF 369 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred CEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCc
Confidence 477899998887 6999999999 5699999999999999998876643222222 34444443 245
Q ss_pred cHHHHHHHHHHHHh
Q 010888 421 SGSDIRLVSKEAAM 434 (498)
Q Consensus 421 s~~dL~~L~~~A~~ 434 (498)
.+.....++..|..
T Consensus 370 ~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 370 LPDKAIDLIDEAGS 383 (758)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 55666666665543
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=2e-14 Score=147.48 Aligned_cols=226 Identities=15% Similarity=0.086 Sum_probs=147.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCc--eEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccc
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 286 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~--~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~ 286 (498)
+....++++|.+..++.+.+.+..... ...+. +++|+||||||||++++++++.+ +.++++++|..
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 445568999999999999988754322 12234 89999999999999999999998 57899999765
Q ss_pred cchh----------------cccCc-HHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 287 VVSK----------------WRGDS-EKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 287 l~~~----------------~~G~~-~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
.... ..+.. ......+..... ...|.||+|||+|.+. ...+..|+..++
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~ 150 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQ 150 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHH
Confidence 4311 01111 222222322222 2457899999999882 234556666665
Q ss_pred CCcc-CCCcEEEEEEeCCC---CCCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHhc--
Q 010888 349 GLTQ-SDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQT---GEESLPYDLLVERTE-- 418 (498)
Q Consensus 349 ~~~~-~~~~viVIaaTn~p---~~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~~~---~~~~~~l~~La~~t~-- 418 (498)
.... ...++.+|++||.+ ..+++.+.+||.. .+.+++++.++..++++..+.... ...+..++.+++.+.
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 4322 11357788889887 6688999999875 799999999999999988875311 112223555677773
Q ss_pred ------CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 010888 419 ------GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 477 (498)
Q Consensus 419 ------g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ps 477 (498)
+-.++.+..+++.++..+.++ . ...++.+|+..++.....+
T Consensus 231 ~~~~~~~G~~r~~~~~l~~a~~~a~~~------~------------~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 231 TPLDTNRGDARLAIDILYRSAYAAQQN------G------------RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp STTCTTSCCHHHHHHHHHHHHHHHHHT------T------------CSSCCHHHHHHHHHHHSCC
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHh------C------------CCCcCHHHHHHHHHHHhhh
Confidence 224556666676666544321 0 0126777777777665443
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=1.5e-15 Score=170.67 Aligned_cols=203 Identities=20% Similarity=0.241 Sum_probs=140.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchh--------
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-------- 290 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~-------- 290 (498)
+++|++++++.+...+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 5889999999888876542110 00112344689999999999999999999999999999999887543
Q ss_pred ----cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--c------CCCcEE
Q 010888 291 ----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SDELVF 358 (498)
Q Consensus 291 ----~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------~~~~vi 358 (498)
|+|..+. ..+....+...++||||||+|.+.+ .+++.|+..++.-. . .-.+++
T Consensus 536 ~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 536 APPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp CCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred CCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-------------HHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 2221111 1234445556679999999998743 36777888877321 1 114578
Q ss_pred EEEEeCCCC-------------------------CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC---------C
Q 010888 359 VLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---------G 404 (498)
Q Consensus 359 VIaaTn~p~-------------------------~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~---------~ 404 (498)
||+|||.+. .+++++++||+..+.|++|+.+++..|++.++.... .
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 999999854 578999999998899999999999999998875321 1
Q ss_pred C-CCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 010888 405 E-ESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 405 ~-~~~~l~~La~~t--~g~s~~dL~~L~~~A~~~a~rr 439 (498)
. .+..++.+++.. ..+..+++..+++.+...++.+
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 1 112244455443 2345677777777777665554
No 67
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=3.9e-15 Score=149.11 Aligned_cols=179 Identities=21% Similarity=0.198 Sum_probs=122.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 010888 210 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA 284 (498)
Q Consensus 210 ~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~ 284 (498)
...++.+|++++|++.+++.+...+... ...++||+||||||||++|+++++.+. ..++.+++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 3466788999999999999999877431 123599999999999999999999863 34788887
Q ss_pred cccchhcccCcHHHHHHHHHHH--HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE
Q 010888 285 SSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 362 (498)
Q Consensus 285 s~l~~~~~G~~~~~l~~~f~~a--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa 362 (498)
++..+. ......+....... ....+.+|+|||+|.+... ..+.|+..++.. ...+.+|++
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~---~~~~~~i~~ 146 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEMF---SSNVRFILS 146 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHT---TTTEEEEEE
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHhc---CCCCeEEEE
Confidence 654321 11111222211100 1134789999999988432 345566666532 334678888
Q ss_pred eCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcC
Q 010888 363 TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 419 (498)
Q Consensus 363 Tn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g 419 (498)
||.+..+.+++.+|+. .+.+++|+.++...+++..+....... +..++.++..+.|
T Consensus 147 ~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 147 CNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp ESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred eCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 9999899999999996 789999999999999998876544322 2234445555543
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=6.4e-15 Score=147.31 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=124.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 286 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~ 286 (498)
.++..|++++|++.+++.+.+.+.. ... .+++|+||||+|||++|+++++++ +.+++.+++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 5567899999999999999988743 122 249999999999999999999986 35678888765
Q ss_pred cchhcccCcHHHHHHHHHHHH-------hcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 287 VVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 287 l~~~~~G~~~~~l~~~f~~a~-------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
.. ....++..+.... ...+.||+|||+|.+... ..+.|+..++. ....+.+
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~ 140 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSNSTRF 140 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTTTEEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCCCceE
Confidence 32 1233444444433 234789999999988532 23445555553 2334677
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCC
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGY 420 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~~l~~La~~t~g~ 420 (498)
|.+||.+..+.+++++|+. .+.+++|+.++...+++.++....... +..+..+++.+.|.
T Consensus 141 il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~ 201 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD 201 (323)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC
T ss_pred EEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 8888988899999999995 799999999999999998775443332 22345566666553
No 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.7e-15 Score=152.75 Aligned_cols=160 Identities=10% Similarity=0.062 Sum_probs=114.3
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEEEeccccch
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS 289 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~v~~s~l~~ 289 (498)
|.|.++..+.+...+...+. ...+.+++|+||||||||++++++++++ ...++++||..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 55666777777766644332 3456899999999999999999999998 35688999876532
Q ss_pred h----------c------ccCcHHHHHHHHHHH--HhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc
Q 010888 290 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 351 (498)
Q Consensus 290 ~----------~------~G~~~~~l~~~f~~a--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 351 (498)
. . .+.....+...|... ....+.||+|||+|.+. . ..++..++....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~--- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS--- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc---
Confidence 2 1 234566677778764 34567899999999996 1 123333443322
Q ss_pred cCCCcEEEEEEeCCCCC----CCHHHHhccc-ceeEecCCCHHHHHHHHHHhcCCC
Q 010888 352 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 352 ~~~~~viVIaaTn~p~~----Ld~al~~Rf~-~~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
....+++||+++|..+. |++++++||. ..+.|++++.++...|++.++...
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 23456889999998764 4455677986 579999999999999999988653
No 70
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.62 E-value=6.7e-15 Score=150.47 Aligned_cols=187 Identities=21% Similarity=0.241 Sum_probs=130.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 278 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------ 278 (498)
...+.+|++++|.+.+++.+...+.. ...++.+||+||||||||++|+++++.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 35567899999999999999988743 1234578999999999999999999988542
Q ss_pred ------------EEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 279 ------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 279 ------------~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
++.++...- .....++.++..+. ...+.||+|||+|.+.. ...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~ 138 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNA 138 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-------------HHHHH
T ss_pred HHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-------------HHHHH
Confidence 233332210 01122444555443 23468999999998842 23456
Q ss_pred HHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCc
Q 010888 343 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYS 421 (498)
Q Consensus 343 Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s 421 (498)
|+..++. ....+++|.+|+.+..+.+.+++|+ ..+.++.|+.++...+++.++.......+ ..+..+++.+.| +
T Consensus 139 Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~ 213 (373)
T 1jr3_A 139 LLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 213 (373)
T ss_dssp HHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-C
T ss_pred HHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-C
Confidence 6777763 2345778888888888999999998 67999999999999999988765443322 235557777765 5
Q ss_pred HHHHHHHHHHH
Q 010888 422 GSDIRLVSKEA 432 (498)
Q Consensus 422 ~~dL~~L~~~A 432 (498)
++++..+++.+
T Consensus 214 ~r~~~~~l~~~ 224 (373)
T 1jr3_A 214 LRDALSLTDQA 224 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666554
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.61 E-value=1.2e-13 Score=140.37 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=143.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhc
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 291 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~ 291 (498)
....+|++++|.+.+++.+...+..... ...++.+++|+|||||||||+++++|++++.++...++..+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--
Confidence 4456899999999998888876543210 0134467999999999999999999999999887776654321
Q ss_pred ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc-------c--------CCCc
Q 010888 292 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------Q--------SDEL 356 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~--------~~~~ 356 (498)
...+..++.. ...+.|+||||++.+.+. ..+.++..++... . .-..
T Consensus 90 ----~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 ----QGDMAAILTS--LERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ----HHHHHHHHHH--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CC
T ss_pred ----HHHHHHHHHH--ccCCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1222233221 234689999999988532 1222333332211 0 0123
Q ss_pred EEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 010888 357 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 435 (498)
Q Consensus 357 viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t~g~s~~dL~~L~~~A~~~ 435 (498)
+.++.+|+.+..|++++++||.....+++|+.++..++++..........+ ..+..+++++.| +++.+..+++.+...
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDM 229 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 566779999999999999999878899999999999999988765443322 235667777766 456666676655443
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 010888 436 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 436 a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~ 475 (498)
+..+ +. ..|+.+++.+++....
T Consensus 230 a~~~------~~------------~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 230 LTVV------KA------------DRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHH------TC------------SSBCHHHHHHHHHHHT
T ss_pred HHHc------CC------------CCcCHHHHHHHHHHhC
Confidence 3221 00 1277777777777654
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=9e-16 Score=174.61 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=129.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCeEEE
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFN 281 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----------~~~~i~ 281 (498)
..+.+|++++|.++.++.+.+.+.. ...++++|+||||||||++|+++|+++ +.+++.
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 3467899999999999988887632 234679999999999999999999988 889999
Q ss_pred Eeccccc--hhcccCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEE
Q 010888 282 ISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 358 (498)
Q Consensus 282 v~~s~l~--~~~~G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~vi 358 (498)
++++.+. ..+.|..+..++.++..+... .|+||||||+|.+.+...... .....+.+...++ . ..+.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~----~-~~i~ 301 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA----R-GELR 301 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----T-TCCC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh----C-CCeE
Confidence 9998886 467788889999999988865 689999999999976543211 1122333444443 1 2366
Q ss_pred EEEEeCCCC----CCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC----CC-CCCCHHHHHHHh-----cCCcHHH
Q 010888 359 VLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GE-ESLPYDLLVERT-----EGYSGSD 424 (498)
Q Consensus 359 VIaaTn~p~----~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~----~~-~~~~l~~La~~t-----~g~s~~d 424 (498)
+|++||.+. .+++++.+||.. +.++.|+.+++..||+.++.... .. .+..+..++..+ ..+.+..
T Consensus 302 ~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHH
T ss_pred EEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHH
Confidence 788888763 478999999975 99999999999999987764321 11 122244444443 3455666
Q ss_pred HHHHHHHHHh
Q 010888 425 IRLVSKEAAM 434 (498)
Q Consensus 425 L~~L~~~A~~ 434 (498)
...++.+|..
T Consensus 381 ai~lldea~a 390 (854)
T 1qvr_A 381 AIDLIDEAAA 390 (854)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=1.1e-14 Score=155.60 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=100.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEecc-----ccchhc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-----SVVSKW 291 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s-----~l~~~~ 291 (498)
.|+|.+++++.+...+.. ..++||+||||||||++|+++|+.++ .++..+++. ++.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 689999999888766532 25899999999999999999999884 466666653 222222
Q ss_pred ccCcHHHHHHHHHHHHhc---CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCC-------ccCCCcEEEEE
Q 010888 292 RGDSEKLIKVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------TQSDELVFVLA 361 (498)
Q Consensus 292 ~G~~~~~l~~~f~~a~~~---~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------~~~~~~viVIa 361 (498)
.+..... ...+..+... .++||||||++.+. ...++.|+..|+.- .......++|+
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ 154 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVA 154 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGCC-------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEE
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhh
Confidence 2211111 1222222221 46799999998764 33566777777532 11112224677
Q ss_pred EeCCCCC---CCHHHHhcccceeEecCCCH-HHHHHHHHHhcC
Q 010888 362 ATNLPWE---LDAAMLRRLEKRILVPLPDT-EARRAMFESLLP 400 (498)
Q Consensus 362 aTn~p~~---Ld~al~~Rf~~~i~~~~Pd~-~eR~~IL~~~l~ 400 (498)
|||.+.. +.+++++||...+.+++|+. +++..|++....
T Consensus 155 ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 155 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred ccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 7876432 45799999988899999987 778899987653
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.57 E-value=1.5e-14 Score=164.67 Aligned_cols=206 Identities=24% Similarity=0.286 Sum_probs=139.2
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh---
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~--- 290 (498)
+++++|++++++.+...+...... ......|..++||+||||||||++|+++++.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 357899999999998887543210 01112344689999999999999999999999 789999999877543
Q ss_pred ---------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc--------C
Q 010888 291 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 353 (498)
Q Consensus 291 ---------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~ 353 (498)
++|... ...+....+...++||||||+|.+. ..+++.|+..++.-.. .
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCCEec
Confidence 112211 1223344455567999999999874 3467788888874311 1
Q ss_pred CCcEEEEEEeCCC--------------------------CCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCC----
Q 010888 354 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---- 403 (498)
Q Consensus 354 ~~~viVIaaTn~p--------------------------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~---- 403 (498)
-.+++||+|||.+ ..+.+++++||+..+.+.+|+.++...|++.++....
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2357899999972 2467889999999899999999999999988764211
Q ss_pred -----CC-CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHH
Q 010888 404 -----GE-ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRL 440 (498)
Q Consensus 404 -----~~-~~~~l~~La~~t~--g~s~~dL~~L~~~A~~~a~rrl 440 (498)
.. .+..++.|++..- .++.++|+.+++++...++.+.
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 11 1122444555443 4566777777777766665543
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.55 E-value=7.7e-15 Score=131.09 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=90.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCc
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 295 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~ 295 (498)
+++|.+...+.+.+.+... .....+|||+||||||||++|+++++.+ +.+++ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 6889999999998877542 2345789999999999999999999987 78999 999877544
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-------CC
Q 010888 296 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-------WE 368 (498)
Q Consensus 296 ~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-------~~ 368 (498)
......+..+. +++|||||+|.+... .+..|+..+.. ...++.+|++||.+ ..
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~~-------------~q~~Ll~~l~~---~~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTRE-------------QQYHLVQLQSQ---EHRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCHH-------------HHHHHHHHHHS---SSCSSCEEEEESSCHHHHHHHSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCHH-------------HHHHHHHHHhh---cCCCEEEEEECCcCHHHHHHcCC
Confidence 22344555554 378999999998543 34456666642 23345688889875 23
Q ss_pred CCHHHHhcccceeEecCC
Q 010888 369 LDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 369 Ld~al~~Rf~~~i~~~~P 386 (498)
+.+.+..|+.. +.+.+|
T Consensus 126 ~~~~L~~rl~~-~~i~lP 142 (145)
T 3n70_A 126 IIAELYYCFAM-TQIACL 142 (145)
T ss_dssp CCHHHHHHHHH-HEEECC
T ss_pred CCHHHHHHhcC-CEEeCC
Confidence 56677777632 344444
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=4e-13 Score=136.55 Aligned_cols=213 Identities=18% Similarity=0.198 Sum_probs=136.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CeEEEEecc
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS 285 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~-----~~~i~v~~s 285 (498)
..++.+|++++|++.+++.|...+.. ... .+++|+||||||||++|+++++.+. ..+..++++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------GKL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 45678899999999999999887643 112 2499999999999999999999873 246677765
Q ss_pred ccchhcccCcHHHHHHHHHHHHh------cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEE
Q 010888 286 SVVSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 359 (498)
Q Consensus 286 ~l~~~~~G~~~~~l~~~f~~a~~------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viV 359 (498)
+..+ ...++..+..... ..+.|++|||+|.+... ..+.|+..++.. ...+.+
T Consensus 86 ~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~---~~~~~~ 143 (340)
T 1sxj_C 86 DDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TKNTRF 143 (340)
T ss_dssp SCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TTTEEE
T ss_pred cccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcC---CCCeEE
Confidence 5321 2233333332221 23689999999988432 345566666633 233567
Q ss_pred EEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 010888 360 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 439 (498)
Q Consensus 360 IaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rr 439 (498)
|.+||.+..+.+++++|+. .+.++.++.++...++...+...... ++...+..+. ....+..|+
T Consensus 144 il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~--------------i~~~~~~~i~-~~s~G~~r~ 207 (340)
T 1sxj_C 144 CVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLK--------------LSPNAEKALI-ELSNGDMRR 207 (340)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCC--------------BCHHHHHHHH-HHHTTCHHH
T ss_pred EEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCC--------------CCHHHHHHHH-HHcCCCHHH
Confidence 7788999999999999995 68888889998888888777443222 2222222222 233445566
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 010888 440 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 476 (498)
Q Consensus 440 l~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~~~~p 476 (498)
+.+.++......... ....++.+++.+++....+
T Consensus 208 ~~~~l~~~~~~~~~~---~~~~it~~~v~~~~~~~~~ 241 (340)
T 1sxj_C 208 VLNVLQSCKATLDNP---DEDEISDDVIYECCGAPRP 241 (340)
T ss_dssp HHHHTTTTTTTTCSS---SCCCBCHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhcCCc---ccccccHHHHHHHhCCCCH
Confidence 666665433211110 0123888888777665433
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=5.7e-14 Score=142.89 Aligned_cols=179 Identities=14% Similarity=0.183 Sum_probs=118.1
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 010888 209 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 277 (498)
Q Consensus 209 ~~~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~----------- 277 (498)
....++.+|++++|++.+++.++..+.. ....+. ++|+||+|||||++++++++++..
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~~----------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSDQ----------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTTC----------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHhh----------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 3456778899999999999988876511 112233 999999999999999999996511
Q ss_pred ------------------eEEEEeccccchhcccCcHHHHHHHHHHHH--------------hcCCeEEEEcCccchhhh
Q 010888 278 ------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 278 ------------------~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~--------------~~~p~VL~IDEiD~l~~~ 325 (498)
+++.+++++.. ......++..+..+. ...|.||+|||++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~- 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK- 148 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-
Confidence 12233322110 001112344443332 22567999999998632
Q ss_pred ccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCC
Q 010888 326 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 405 (498)
Q Consensus 326 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~ 405 (498)
...+.++..++... ..+.+|.+|+.+..+.+.+++|+ ..+.|++|+.++...+++..+......
T Consensus 149 ------------~~~~~L~~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 ------------DAQAALRRTMEKYS---KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp ------------HHHHHHHHHHHHST---TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred ------------HHHHHHHHHHHhhc---CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 23455666665432 24677888999999999999999 779999999999999999887654433
Q ss_pred C--CCCHHHHHHHhcC
Q 010888 406 E--SLPYDLLVERTEG 419 (498)
Q Consensus 406 ~--~~~l~~La~~t~g 419 (498)
. +..+..+++.+.|
T Consensus 213 ~~~~~~l~~i~~~~~G 228 (354)
T 1sxj_E 213 LETKDILKRIAQASNG 228 (354)
T ss_dssp ECCSHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHcCC
Confidence 2 2335556665554
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.52 E-value=4.2e-15 Score=132.58 Aligned_cols=131 Identities=12% Similarity=0.143 Sum_probs=89.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHH
Q 010888 219 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 298 (498)
Q Consensus 219 ~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~ 298 (498)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++.+. +++.++|+++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999999988875432 3346899999999999999999999988 99999998875443
Q ss_pred HHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC-CC----CCHHH
Q 010888 299 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM 373 (498)
Q Consensus 299 l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p-~~----Ld~al 373 (498)
....+..+. +++|||||+|.+... .+..++..++... ..++.+|++||.+ .. +++.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN-------------IQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH-------------HHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH-------------HHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHH
Confidence 345555543 479999999998643 2334555554321 3346678888764 33 44566
Q ss_pred HhcccceeEecCC
Q 010888 374 LRRLEKRILVPLP 386 (498)
Q Consensus 374 ~~Rf~~~i~~~~P 386 (498)
..|+.. +.+.+|
T Consensus 129 ~~rl~~-~~i~lP 140 (143)
T 3co5_A 129 AGLFSE-SVVRIP 140 (143)
T ss_dssp HHHSSS-EEEEEC
T ss_pred HHHhcC-cEEeCC
Confidence 667643 344444
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=1.4e-14 Score=158.37 Aligned_cols=165 Identities=23% Similarity=0.277 Sum_probs=104.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhc-cCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE----eccccchhcc
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFT-GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 292 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~-~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v----~~s~l~~~~~ 292 (498)
..|+|++.+|+.+...+... .+.... .......++||+||||||||++|+++|+.++...+.. ++..+.+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 57899999988775433221 000000 1123345899999999999999999999998766543 2233322211
Q ss_pred -----cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc----------cCCCcE
Q 010888 293 -----GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELV 357 (498)
Q Consensus 293 -----G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~v 357 (498)
|... .....+..| .++||||||+|.+.+. .++.|+..|+.-. ..+.++
T Consensus 373 ~~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 373 REKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SGGGTSSCS-EEECHHHHH---SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ecccccccc-ccCCeeEec---CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 1100 001122233 3489999999998543 4556777776321 123457
Q ss_pred EEEEEeCCCC-------------CCCHHHHhcccc-eeEecCCCHHHHHHHHHHhcCCC
Q 010888 358 FVLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQ 402 (498)
Q Consensus 358 iVIaaTn~p~-------------~Ld~al~~Rf~~-~i~~~~Pd~~eR~~IL~~~l~~~ 402 (498)
.||+|||++. .+++++++||+. .+..+.|+.+ ...|.++.+..+
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 8999999986 899999999974 4455667777 888888877544
No 80
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.47 E-value=2.1e-14 Score=149.02 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=142.0
Q ss_pred CccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh---
Q 010888 217 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 290 (498)
Q Consensus 217 ~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~--- 290 (498)
+..++|.+...+++.+.+.. ......+|+|+|++||||+++|++++..+ +.+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHH----------hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 46788988888888877644 23445679999999999999999999987 479999999876432
Q ss_pred ----------cccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhC--------Ccc
Q 010888 291 ----------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQ 352 (498)
Q Consensus 291 ----------~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~--------~~~ 352 (498)
+.|.... ..+.|+.|.. ++|||||++.+... ++..|+..++. ...
T Consensus 206 ~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSB
T ss_pred HHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 1111111 2234555443 78999999998643 44556665542 111
Q ss_pred CCCcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH----h
Q 010888 353 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER----T 417 (498)
Q Consensus 353 ~~~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~~l~~La~~----t 417 (498)
...++.||+|||.. ..+.+.+..|+. .+.+.+|+..+|.+ ++++++. ..++. .
T Consensus 269 ~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~-----------~~~~~~~~~~ 336 (387)
T 1ny5_A 269 IEVNVRILAATNRNIKELVKEGKFREDLYYRLG-VIEIEIPPLRERKEDIIPLANHFLK-----------KFSRKYAKEV 336 (387)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-TEEEECCCGGGCHHHHHHHHHHHHH-----------HHHHHTTCCC
T ss_pred eeccEEEEEeCCCCHHHHHHcCCccHHHHHhhc-CCeecCCcchhccccHHHHHHHHHH-----------HHHHHcCCCC
Confidence 22357899999973 224555555663 35667787766654 3333332 22222 2
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 010888 418 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 472 (498)
Q Consensus 418 ~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~~AL~ 472 (498)
.++++..+..+..+.|++++|++.+.++.....+++. .|+.+|+...++
T Consensus 337 ~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~~------~i~~~~l~~~~~ 385 (387)
T 1ny5_A 337 EGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGK------FIDRGELSCLVN 385 (387)
T ss_dssp CEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSS------EECHHHHHHHC-
T ss_pred CCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCC------cCcHHHCcHhhh
Confidence 3578899999999999999999999999887665443 389999865543
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.40 E-value=8.7e-12 Score=126.63 Aligned_cols=163 Identities=12% Similarity=0.118 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe------------------------
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------ 278 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~------------------------ 278 (498)
++++.+.+...+.. ...++.+||+||||+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~~-----------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHc-----------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 55677777766532 2344679999999999999999999988532
Q ss_pred EEEEeccccchhcccCcHHHHHHHHHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC
Q 010888 279 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 354 (498)
Q Consensus 279 ~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 354 (498)
++.+++.+- ........++.+.+.+.. ..+.|++|||+|.+.. ...+.|+..++. ..
T Consensus 76 ~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-------------~a~naLLk~lEe---p~ 136 (334)
T 1a5t_A 76 YYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-------------AAANALLKTLEE---PP 136 (334)
T ss_dssp EEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-------------HHHHHHHHHHTS---CC
T ss_pred EEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-------------HHHHHHHHHhcC---CC
Confidence 333433210 011233456666666543 2468999999999842 245678888873 34
Q ss_pred CcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC
Q 010888 355 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY 420 (498)
Q Consensus 355 ~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~ 420 (498)
..+++|.+||.++.+.+.+++|+ ..+.|+.|+.++...+++... . ..+..+..++..+.|-
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAGS 197 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTTC
T ss_pred CCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCCC
Confidence 45778888888999999999999 469999999999999998876 1 1222345566666653
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.35 E-value=2.8e-11 Score=124.97 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=128.3
Q ss_pred CCCCCccccCcHHHHHHHHHHH-hccccCchhhccCCCCCceEEE--EcCCCCcHHHHHHHHHHHh---------CCeEE
Q 010888 213 PDVKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFF 280 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i-~~~l~~~~~~~~~~~~~~~vLL--~GppGtGKT~lAraia~~l---------~~~~i 280 (498)
|....++++|.+...+.+.+.+ ...... ....+..++| +||||+|||++++.+++++ +.+++
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 3445578999999999888876 432211 0123468999 9999999999999999876 45778
Q ss_pred EEeccccch------h----c------ccCc-HHHHHHHHHHHH-hcCCeEEEEcCccchhhhccccchhhHHHHHHHHH
Q 010888 281 NISASSVVS------K----W------RGDS-EKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 342 (498)
Q Consensus 281 ~v~~s~l~~------~----~------~G~~-~~~l~~~f~~a~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 342 (498)
++++..... . . .+.. ......+..... ...|.+|+|||+|.+...... .......
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~ 163 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYT 163 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHH
Confidence 888743211 0 0 0111 122223222222 245789999999998542110 0223344
Q ss_pred HHHHhhCCccCC--CcEEEEEEeCCCC---CCC---HHHHhcccceeEecCCCHHHHHHHHHHhcCCCCC---CCCCCHH
Q 010888 343 LLIQMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG---EESLPYD 411 (498)
Q Consensus 343 Ll~~ld~~~~~~--~~viVIaaTn~p~---~Ld---~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~---~~~~~l~ 411 (498)
++..+......+ .++.+|++|+.+. .++ +.+.+++...+.+++++.++..++++..+..... ..+..+.
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 444444332113 5677888887654 244 6677777666899999999999999876542211 1122355
Q ss_pred HHHHHhc------CCcHHHHHHHHHHHHhHH
Q 010888 412 LLVERTE------GYSGSDIRLVSKEAAMQP 436 (498)
Q Consensus 412 ~La~~t~------g~s~~dL~~L~~~A~~~a 436 (498)
.+++.+. | .+..+..++..++..+
T Consensus 244 ~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 244 LISDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 5677777 5 4566667777665443
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.34 E-value=4e-12 Score=139.23 Aligned_cols=52 Identities=35% Similarity=0.516 Sum_probs=44.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 211 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 211 ~~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++..|++++|++.+++.+...+.. ..+++|+||||||||++|++++..+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45677899999999999888876632 35899999999999999999999884
No 84
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.33 E-value=4.4e-13 Score=138.20 Aligned_cols=197 Identities=20% Similarity=0.248 Sum_probs=131.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCe--EEEEeccccchhc----
Q 010888 218 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKW---- 291 (498)
Q Consensus 218 ~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~--~i~v~~s~l~~~~---- 291 (498)
.+++|.+...+++.+.+... ......+|++|++||||+++|++++...+.. |+.+||+.+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhh----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 57889888888887766432 2334579999999999999999999988543 9999998764321
Q ss_pred ---------ccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc--------cCC
Q 010888 292 ---------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 354 (498)
Q Consensus 292 ---------~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 354 (498)
.|.... ....|+.|.. ++|||||++.+... ++..|+..++.-. ...
T Consensus 199 lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 199 LFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp HHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBEE
T ss_pred hcCccccccCCcccc-cCChHhhcCC---CeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCccee
Confidence 111111 1234555443 68999999998643 5556666665211 112
Q ss_pred CcEEEEEEeCCC-------CCCCHHHHhcccceeEecCCCHHHHH----HHHHHhcCCCCCCCCCCHHHHHHH----hcC
Q 010888 355 ELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVER----TEG 419 (498)
Q Consensus 355 ~~viVIaaTn~p-------~~Ld~al~~Rf~~~i~~~~Pd~~eR~----~IL~~~l~~~~~~~~~~l~~La~~----t~g 419 (498)
.++.+|++||.. ..+.+.+..|+. .+.+.+|...+|. .++++++. ..+.. ..+
T Consensus 262 ~~~rii~at~~~l~~~v~~g~fr~dL~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~-----------~~~~~~~~~~~~ 329 (368)
T 3dzd_A 262 VDIRVISATNKNLEEEIKKGNFREDLYYRLS-VFQIYLPPLRERGKDVILLAEYFLK-----------KFAKEYKKNCFE 329 (368)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-SEEEECCCGGGSTTHHHHHHHHHHH-----------HHHHHTTCCCCC
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHHHhC-CeEEeCCChhhchhhHHHHHHHHHH-----------HHHHHcCCCCCC
Confidence 257789999874 224456666763 4566677666654 33343332 22222 245
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCC
Q 010888 420 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 453 (498)
Q Consensus 420 ~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~ 453 (498)
+++..+..|..+.|++++|++.+.++......++
T Consensus 330 ~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~~ 363 (368)
T 3dzd_A 330 LSEETKEYLMKQEWKGNVRELKNLIERAVILCEG 363 (368)
T ss_dssp BCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999987665443
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=3.9e-11 Score=120.46 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCeEEEEeccccchhcccCc
Q 010888 222 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS 295 (498)
Q Consensus 222 G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l------~~~~i~v~~s~l~~~~~G~~ 295 (498)
|++++.+.|+..+... . ..++||+||||+|||++|+++++.+ ...++.++++.- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 5677888888776431 2 4689999999999999999999864 346777776421 123
Q ss_pred HHHHHHHHHHHHhcC----CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCH
Q 010888 296 EKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 371 (498)
Q Consensus 296 ~~~l~~~f~~a~~~~----p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~ 371 (498)
-..++.+.+.+...+ ..|++|||+|.+.. ...+.|+..++. ....+++|.+|+.+..+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~-------------~a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-------------QAANAFLKALEE---PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-------------HHHHHTHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChHhChH
Confidence 345677777775432 46999999999842 246778888873 3344667777888899999
Q ss_pred HHHhcccceeEecCCCHHHHHHHHHHhc
Q 010888 372 AMLRRLEKRILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 372 al~~Rf~~~i~~~~Pd~~eR~~IL~~~l 399 (498)
++++| .+.|+.|+.++...+++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 79999999999999888876
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.22 E-value=1.5e-11 Score=146.29 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=107.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccC----------chhhcc-------------------CCCCCceEEEEcCCCC
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-------------------LLSPWKGILLFGPPGT 262 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~----------~~~~~~-------------------~~~~~~~vLL~GppGt 262 (498)
.+.+.|+++.|++++|+.+.+.+.+++.+ ++.+.. ..+.++.+|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34588999999999999999999998844 333332 1233445999999999
Q ss_pred cHHHHHHHHHHHh---CCeEEEEeccccc------------hhcccC----cHHHHHHHHHHHHhcCCeEEEEcCccchh
Q 010888 263 GKTMLAKAVATEC---KTTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAII 323 (498)
Q Consensus 263 GKT~lAraia~~l---~~~~i~v~~s~l~------------~~~~G~----~~~~l~~~f~~a~~~~p~VL~IDEiD~l~ 323 (498)
|||++|++++.+. +.+.+.|+..+.. .++.+. +++.++.++..|+...|++||+|++|+|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999877 6677777776544 455666 79999999999999999999999999999
Q ss_pred hhcc---ccc-hhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 324 SQRG---EAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 324 ~~r~---~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
+.+. ... .......+++++++..+++...... |+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 8843 111 1124566788999999987654444 5555 77764
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.12 E-value=1.1e-10 Score=95.49 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHH
Q 010888 387 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 466 (498)
Q Consensus 387 d~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD 466 (498)
|.++|.+||+.++++.+...+++++.||+.|.||||+||.++|++|+..++++. ..+|+.+|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence 567899999999999998889999999999999999999999999999999861 12499999
Q ss_pred HHHHHhccCCChhh--hHHHHHHHH
Q 010888 467 VEIALKNTRPSAHL--HAHRYEKFN 489 (498)
Q Consensus 467 ~~~AL~~~~ps~~~--~~~~~~~~~ 489 (498)
|..|++++.++... ....|.+|+
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 99999999998754 378899996
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.11 E-value=4.1e-10 Score=139.29 Aligned_cols=140 Identities=19% Similarity=0.301 Sum_probs=93.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH-HhCCeEEEEeccccchhcccCcHHHHHHHHHHHH---------------hcCCeE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVAT-ECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR---------------HHAPST 313 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~-~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~---------------~~~p~V 313 (498)
..+++||+||||||||++|+.+.. ..+.+++.++++...+ ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 347999999999999999955544 4478888888876542 233444443321 123479
Q ss_pred EEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCC-------CcEEEEEEeCCCC-----CCCHHHHhccccee
Q 010888 314 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-------ELVFVLAATNLPW-----ELDAAMLRRLEKRI 381 (498)
Q Consensus 314 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~-------~~viVIaaTn~p~-----~Ld~al~~Rf~~~i 381 (498)
|||||++....++.+.... ..++.+++ ..++..... .++.+|+|+|+|. .++++++||| ..+
T Consensus 1340 lFiDEinmp~~d~yg~q~~----lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQNV----VLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSCCHH----HHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEE
T ss_pred EEecccccccccccCchhH----HHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEE
Confidence 9999998754443222111 22233333 222221111 3588999999994 7999999999 779
Q ss_pred EecCCCHHHHHHHHHHhcCC
Q 010888 382 LVPLPDTEARRAMFESLLPS 401 (498)
Q Consensus 382 ~~~~Pd~~eR~~IL~~~l~~ 401 (498)
.++.|+.+++..|+..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.07 E-value=1.6e-10 Score=106.15 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=62.7
Q ss_pred CCCCCCccccCc----HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEe
Q 010888 212 SPDVKWESIKGL----ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 283 (498)
Q Consensus 212 ~~~~~~~~IvG~----~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~ 283 (498)
..+.+|+++++. ..+.+.+++++.... ..++.+++|+||||||||++++++++.+ |..++.++
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 356789998863 344444444443211 2335789999999999999999999977 66777788
Q ss_pred ccccchhcccCcHHH-HHHHHHHHHhcCCeEEEEcCccch
Q 010888 284 ASSVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 284 ~s~l~~~~~G~~~~~-l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
..++...+....... ....... -..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 776654332110000 0011222 235789999999854
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.04 E-value=5.7e-10 Score=100.12 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 326 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r 326 (498)
+...++|+||+|+|||+++++++..+ |...++++..++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 45689999999999999999999988 777888888776543 112357899999998764321
Q ss_pred cccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeC-CCCCCC--HHHHhcccceeEecC
Q 010888 327 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRILVPL 385 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn-~p~~Ld--~al~~Rf~~~i~~~~ 385 (498)
...++..++.....+..++|| ||| .|..+. +.+.+|+..-..+.+
T Consensus 100 -------------~~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 100 -------------QALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp -------------HHHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred -------------HHHHHHHHHHHHHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 222333333222222223444 555 454332 899999976665544
No 91
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.00 E-value=4.3e-10 Score=91.45 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=69.9
Q ss_pred EecCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCC
Q 010888 382 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGP 461 (498)
Q Consensus 382 ~~~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~ 461 (498)
.-.+||.++|.+||+.++++.+...+++++.||+.|.||||+||.++|++|+..++++. ..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence 34689999999999999999988889999999999999999999999999999998862 134
Q ss_pred CCHHHHHHHHhccCCC
Q 010888 462 IRPEDVEIALKNTRPS 477 (498)
Q Consensus 462 It~eD~~~AL~~~~ps 477 (498)
|+++||..|+++++|.
T Consensus 69 I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ECHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccC
Confidence 9999999999998774
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.00 E-value=3.6e-10 Score=91.17 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHH
Q 010888 387 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 466 (498)
Q Consensus 387 d~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD 466 (498)
|.++|.+||+.+++..+...+++++.||+.|.||||+||..+|++|+..++++. ..+|+++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence 678999999999999888888999999999999999999999999999887641 13499999
Q ss_pred HHHHHhccCCChhhhHHHH
Q 010888 467 VEIALKNTRPSAHLHAHRY 485 (498)
Q Consensus 467 ~~~AL~~~~ps~~~~~~~~ 485 (498)
|..|+++++|+.++++..|
T Consensus 64 f~~Al~~~~ps~~~~l~~y 82 (83)
T 3aji_B 64 FEKAYKTVIKKDEQEHEFY 82 (83)
T ss_dssp HHHHHHHHCC---------
T ss_pred HHHHHHHHccCchHHHHhc
Confidence 9999999999988555655
No 93
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.97 E-value=9.1e-10 Score=87.70 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=67.3
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCC
Q 010888 384 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 463 (498)
Q Consensus 384 ~~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It 463 (498)
|+|+.++|.+||+.+++..+...+++++.||+.|.||||+||..+|++|+..++++- ..+|+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~ 62 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT 62 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence 689999999999999999888889999999999999999999999999999998851 12499
Q ss_pred HHHHHHHHhccCC
Q 010888 464 PEDVEIALKNTRP 476 (498)
Q Consensus 464 ~eD~~~AL~~~~p 476 (498)
.+||..|++++..
T Consensus 63 ~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 63 QEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.83 E-value=3.7e-08 Score=98.97 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=111.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc----
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 288 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~---- 288 (498)
+....+.++|.+...+.|.+ +.. ..++|+||+|+|||++++.++++.+...+++++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 44566789999988888887 521 4799999999999999999999987777888775420
Q ss_pred -h--hc------------------------------cc---C------cHHHHHHHHHHHHhc--CCeEEEEcCccchhh
Q 010888 289 -S--KW------------------------------RG---D------SEKLIKVLFELARHH--APSTIFLDEIDAIIS 324 (498)
Q Consensus 289 -~--~~------------------------------~G---~------~~~~l~~~f~~a~~~--~p~VL~IDEiD~l~~ 324 (498)
. .. .+ . ....+..+++..... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 00 00 0 001223344333332 389999999999864
Q ss_pred hccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC---------HHHHhcccceeEecCCCHHHHHHHH
Q 010888 325 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAMF 395 (498)
Q Consensus 325 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld---------~al~~Rf~~~i~~~~Pd~~eR~~IL 395 (498)
..... . ...+..+. +. ..++.+|.+++....+. ..+..|+...+.+++.+.++..+++
T Consensus 152 ~~~~~-----~-~~~l~~~~---~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LRGVN-----L-LPALAYAY---DN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CTTCC-----C-HHHHHHHH---HH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cCchh-----H-HHHHHHHH---Hc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 21100 0 11122222 21 12355666665421111 1123355567889999999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 396 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 396 ~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
+..+.......+ +...+...+.|+. ..+..++.
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHH
Confidence 876643222222 2367778888754 34555444
No 95
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.83 E-value=4.4e-09 Score=98.11 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=62.3
Q ss_pred CCCCCccccCcHH----HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 213 PDVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 213 ~~~~~~~IvG~~~----~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
...+|+++++.+. +.+.+.+++... + ....+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY---E-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC---C-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh---h-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 3568999998553 333333333221 0 01123789999999999999999999988 6788888887
Q ss_pred ccchhcccCcH-HHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 286 SVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 286 ~l~~~~~G~~~-~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
++......... ......+..... +.+|+|||++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~~ 129 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEAM 129 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC--
T ss_pred HHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCcC
Confidence 76543321110 001222333322 46999999977543
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.82 E-value=1.7e-07 Score=93.96 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=110.1
Q ss_pred CCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc----
Q 010888 213 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 288 (498)
Q Consensus 213 ~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~---- 288 (498)
+...-+.++|.+...+.|.+.+.. ...++|+||+|+|||++++.++++.+ .+++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 445567899999999999887632 15899999999999999999999886 6666654321
Q ss_pred --------h---hcc-------------------------cCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchh
Q 010888 289 --------S---KWR-------------------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 332 (498)
Q Consensus 289 --------~---~~~-------------------------G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~ 332 (498)
. ... ......+..+...+....|.+|+|||++.+...... .
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~--~- 147 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR--G- 147 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT--T-
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc--c-
Confidence 0 000 011112222222232234899999999988531000 0
Q ss_pred hHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCC---------HHHHhcccceeEecCCCHHHHHHHHHHhcCCCC
Q 010888 333 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 403 (498)
Q Consensus 333 ~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld---------~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 403 (498)
...+...+-..++.. .++.+|.++.....+. ..+..|+...+.+++.+.++-.++++..+....
T Consensus 148 ---~~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 148 ---GKELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp ---THHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred ---hhhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 012222232223311 2355565654321111 122335555788888999999999987664433
Q ss_pred CCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 010888 404 GEE-SLPYDLLVERTEGYSGSDIRLVSK 430 (498)
Q Consensus 404 ~~~-~~~l~~La~~t~g~s~~dL~~L~~ 430 (498)
... +..+..+...+.|+. .-+..++.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 222 224556777777754 44555443
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.79 E-value=1.3e-08 Score=106.64 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=85.5
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHH-HHHhCCeEEEEec-c---ccchhcccC
Q 010888 220 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISA-S---SVVSKWRGD 294 (498)
Q Consensus 220 IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lArai-a~~l~~~~i~v~~-s---~l~~~~~G~ 294 (498)
|+|++.+|+.|.-.+..... + .....+|||.|+||| ||++|+++ ++.+....+.... + .+.+...+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCcc--c-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 89999998888865533111 0 122348999999999 99999999 7766443332111 1 111111000
Q ss_pred -cHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCc------cCCCcEEEEEEeCCCC
Q 010888 295 -SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------QSDELVFVLAATNLPW 367 (498)
Q Consensus 295 -~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------~~~~~viVIaaTn~p~ 367 (498)
......+.+..|. .+++||||++.+.++ .+..|++.|+.-. .-+.++.||||+|...
T Consensus 287 tG~~~~~G~l~LAd---gGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 287 RGWALRAGAAVLAD---GGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp SSEEEEECHHHHTT---TSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred CCcccCCCeeEEcC---CCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 0000012233332 379999999988543 5566666665211 2344688999999864
Q ss_pred -----------CCCHHHHhcccceeE-ecCCCHH
Q 010888 368 -----------ELDAAMLRRLEKRIL-VPLPDTE 389 (498)
Q Consensus 368 -----------~Ld~al~~Rf~~~i~-~~~Pd~~ 389 (498)
.|++++++||+..+. ...|+.+
T Consensus 351 ~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp --CCSCGGGGCCSCHHHHTTCSEEEETTC-----
T ss_pred ccCCCCCccccCCChHHhhheeeEEEecCCCChh
Confidence 789999999975443 3445443
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.73 E-value=1.3e-08 Score=95.81 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=79.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH--------hC-CeEEEEeccccchhcc----------cC-----cHHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATE--------CK-TTFFNISASSVVSKWR----------GD-----SEKLIKVLFELARH 308 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~--------l~-~~~i~v~~s~l~~~~~----------G~-----~~~~l~~~f~~a~~ 308 (498)
-.|++|+||||||++|...+.. .| .+++..++.++..... .. ....+..++.. ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-PE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-GG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-cc
Confidence 5789999999999999886543 34 7777777765543221 11 11122222111 23
Q ss_pred cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCH
Q 010888 309 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 388 (498)
Q Consensus 309 ~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~ 388 (498)
..++||+|||++.+.+.+...... . .++..+.. .+...+-||.+|+.+..|+.++++|+...++++.|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~---~-----rll~~l~~--~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI---P-----ENVQWLNT--HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC---C-----HHHHGGGG--TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccchh---H-----HHHHHHHh--cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 346899999999997654321111 1 13444442 2233455677888899999999999999898887654
Q ss_pred HH
Q 010888 389 EA 390 (498)
Q Consensus 389 ~e 390 (498)
..
T Consensus 156 ~~ 157 (199)
T 2r2a_A 156 GM 157 (199)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 99
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.64 E-value=1.1e-08 Score=102.76 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=59.9
Q ss_pred CCCCccccCcHH----HHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEecc
Q 010888 214 DVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 285 (498)
Q Consensus 214 ~~~~~~IvG~~~----~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s 285 (498)
+.+|+++++... +.+.+.+++..+ + ..+..+++|+||||||||++|+++++++ +.+++.++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY---P------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC---S------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc---c------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 367999987432 333333333221 0 1124799999999999999999999866 4788888887
Q ss_pred ccchhcccCc-HHHHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 286 SVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 286 ~l~~~~~G~~-~~~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
++........ .......+.... .+.+|+|||++....
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~~ 228 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQA 228 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC---
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCC
Confidence 7655433211 111112222222 346999999976543
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.61 E-value=2.7e-08 Score=99.86 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=51.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCe--EEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~--~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
..+...++|+||||||||++|.+++.+.+.+ |+.+...+....+....+..+..+.+...... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3445678999999999999999999876544 44442233333333445555666666665544 9999999998654
Q ss_pred c
Q 010888 326 R 326 (498)
Q Consensus 326 r 326 (498)
.
T Consensus 198 ~ 198 (331)
T 2vhj_A 198 A 198 (331)
T ss_dssp -
T ss_pred c
Confidence 3
No 101
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.51 E-value=3.4e-08 Score=79.34 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH
Q 010888 389 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 468 (498)
Q Consensus 389 ~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~~~~~~It~eD~~ 468 (498)
++|.+||+.+++..+...+++++.+|+.|.||||+||.++|++|+..++++. ..+|+.+||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence 4689999999998887788999999999999999999999999999998851 1249999999
Q ss_pred HHHhccC-CChhh-hHHHH
Q 010888 469 IALKNTR-PSAHL-HAHRY 485 (498)
Q Consensus 469 ~AL~~~~-ps~~~-~~~~~ 485 (498)
.|++++. |+.+. ++..|
T Consensus 63 ~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 63 EAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHHTTCC-----------
T ss_pred HHHHHHHcCcCChHHHHhh
Confidence 9999984 55543 34443
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.51 E-value=5.3e-07 Score=111.94 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=90.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
.++++.||+|||||.+++++|+.+|.+++.++|++-.. ...+..+|..+...+ +.+++||++.+.+...
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL---- 714 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL---- 714 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH----
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHH----
Confidence 67999999999999999999999999999999987543 244566666555443 8999999998854311
Q ss_pred hhHHHHHHHHHHHHHhhC----Cc------cCCCcEEEEEEeCCC----CCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 332 EHEASRRLKTELLIQMDG----LT------QSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~ld~----~~------~~~~~viVIaaTn~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
.+....+..+...+.. +. .-.....|++|.|+. ..|++++++|| +.+.+..||.+...+|+-
T Consensus 715 --s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 715 --SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp --HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 1111111222222210 10 112345677788843 46999999999 569999999998888754
No 103
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.49 E-value=2.4e-07 Score=87.08 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=63.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 328 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~ 328 (498)
+..+++||+||||||||++|.++++.++..++....+. ..+ .+..+ ....+|+|||+|.-.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l--~~~kIiiLDEad~~~----- 116 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPL--TDTKVAMLDDATTTC----- 116 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGG--TTCSSEEEEEECHHH-----
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhccc--CCCCEEEEECCCchh-----
Confidence 33467999999999999999999999865543221110 000 01111 123589999998421
Q ss_pred cchhhHHHHHHHHHHHHHhhCCc----cCC------CcEEEEEEeCCC---CCCCHHHHhcccceeEecCC
Q 010888 329 ARSEHEASRRLKTELLIQMDGLT----QSD------ELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 386 (498)
Q Consensus 329 ~~~~~~~~~~i~~~Ll~~ld~~~----~~~------~~viVIaaTn~p---~~Ld~al~~Rf~~~i~~~~P 386 (498)
.+.+...+...+++.. .+. ....+|.|||.+ +.--+.+.+|+ ..+.|+.|
T Consensus 117 -------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 117 -------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp -------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred -------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 1223345556666641 111 112456688874 22336788898 44666644
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.34 E-value=9e-07 Score=110.66 Aligned_cols=138 Identities=21% Similarity=0.318 Sum_probs=87.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEeccccchhcccCcHHHHHHHHHHH----H------------hcCCe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELA----R------------HHAPS 312 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a----~------------~~~p~ 312 (498)
..++|||+||||||||++++.....+ +.+++.++++.-. +...+...++.. . ..+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 34789999999999998876655544 6678888887643 223344444321 0 01235
Q ss_pred EEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCcc-------CCCcEEEEEEeCCCC-----CCCHHHHhcccce
Q 010888 313 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPW-----ELDAAMLRRLEKR 380 (498)
Q Consensus 313 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~viVIaaTn~p~-----~Ld~al~~Rf~~~ 380 (498)
|+||||++....+..+.... -.++.+++..- +... .-.++.+|+|+|.|. .+++++.||| ..
T Consensus 1377 VlFiDDiNmp~~D~yGtQ~~----ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~v 1450 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQRV----ITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PI 1450 (3245)
T ss_dssp EEEETTTTCCCCCTTSCCHH----HHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CE
T ss_pred EEEecccCCCCccccccccH----HHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eE
Confidence 99999998654433222111 12222333221 1111 113578899999883 5999999999 55
Q ss_pred eEecCCCHHHHHHHHHHhc
Q 010888 381 ILVPLPDTEARRAMFESLL 399 (498)
Q Consensus 381 i~~~~Pd~~eR~~IL~~~l 399 (498)
+.++.|+.++...|+..++
T Consensus 1451 i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999876543
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.20 E-value=3e-06 Score=102.32 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=76.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----hc------------ccCcHHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KW------------RGDSEKLIKVLFELARH 308 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----~~------------~G~~~~~l~~~f~~a~~ 308 (498)
..++.+++|+||||||||+||.+++.+. |.....++..+... .. ....++.++.+...++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 5677899999999999999999998876 56677777654321 11 12345667777778888
Q ss_pred cCCeEEEEcCccchhhhcc---ccchhhH-HHHHHHHHHHHHhhCCccCCCcEEEEEEeCCC
Q 010888 309 HAPSTIFLDEIDAIISQRG---EARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLP 366 (498)
Q Consensus 309 ~~p~VL~IDEiD~l~~~r~---~~~~~~~-~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p 366 (498)
.+|++|+||+++.+.+... .....+. ...++.++++..+.+...... ++|| +||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence 8999999999998876421 1111111 124566677777766544433 4444 55543
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.17 E-value=1.7e-05 Score=72.90 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999886443
No 107
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.15 E-value=4.3e-06 Score=81.73 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
++.++++|+||||||||++|+++|+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998654
No 108
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.14 E-value=3.5e-05 Score=77.70 Aligned_cols=143 Identities=15% Similarity=0.106 Sum_probs=87.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CC-eEEEEeccccchhcccCcHHHHHHHHHHHH----hcCCeEEEEcCccc-
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KT-TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDA- 321 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~-~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~----~~~p~VL~IDEiD~- 321 (498)
.+.+||+||+|+||++.++.+++.+ +. ++..+... +. ..++.+.+.+. .....|++|||++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~------~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN------TDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT------CCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC------CCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 3689999999999999999998876 32 32222111 11 11233333332 23467999999987
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCC-----CCCCCHHHHhcccceeEecCCCHHHHHHHHH
Q 010888 322 IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-----PWELDAAMLRRLEKRILVPLPDTEARRAMFE 396 (498)
Q Consensus 322 l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~-----p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~ 396 (498)
+.. ...+.|+..++.. ....++|+++++. ...+.+++.+|+ ..+.+..++.++....++
T Consensus 89 l~~-------------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 89 PNA-------------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCT-------------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred CCh-------------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence 632 2345677777633 2333444444432 134667888888 568899999888888888
Q ss_pred HhcCCCCCCCCC-CHHHHHHHhc
Q 010888 397 SLLPSQTGEESL-PYDLLVERTE 418 (498)
Q Consensus 397 ~~l~~~~~~~~~-~l~~La~~t~ 418 (498)
..+.......+. .+..++..+.
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~ 175 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYE 175 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSST
T ss_pred HHHHHcCCCCCHHHHHHHHHHhc
Confidence 887665544222 2344454444
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.03 E-value=2.7e-05 Score=97.62 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=88.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhhhccccch
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 331 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~r~~~~~ 331 (498)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-.. ...+..+|.-+... .+-.++||++.+....-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSv-- 675 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERILSA-- 675 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHH--
Confidence 46789999999999999999999999999999986542 23455555555443 3789999999885331100
Q ss_pred hhHHHHHHHHHHHHHh-----h-CC-ccCCCcEEEEEEeCCC----CCCCHHHHhcccceeEecCCCHHHHHHHHHH
Q 010888 332 EHEASRRLKTELLIQM-----D-GL-TQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFES 397 (498)
Q Consensus 332 ~~~~~~~i~~~Ll~~l-----d-~~-~~~~~~viVIaaTn~p----~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~ 397 (498)
-......++..+.... . |- -.-.....|++|.|.- ..|++.+++|| +.+.+..||.+...+|+-.
T Consensus 676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 0000111111221110 0 10 0112345677788843 56999999999 5599999999888887644
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.97 E-value=1.8e-05 Score=83.42 Aligned_cols=129 Identities=17% Similarity=0.115 Sum_probs=80.9
Q ss_pred CeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEE---------eC---CCCCCCHHHHhccc
Q 010888 311 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE 378 (498)
Q Consensus 311 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaa---------Tn---~p~~Ld~al~~Rf~ 378 (498)
|.|+||||+|.|. ....+.|+..++.. ...++|+++ ++ .+..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 4699999999984 34677888888743 233544444 22 16779999999996
Q ss_pred ceeEecCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHh-cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCC
Q 010888 379 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERT-EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 456 (498)
Q Consensus 379 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~~l~~La~~t-~g~s~~dL~~L~~~A~~~a~rrl~~~le~~~~~~~~~~~ 456 (498)
. +.+++|+.++...+|+..+.......+ ..+..++... .| +++..-.+++.|...+.. ++
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~------~~---------- 421 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKI------NG---------- 421 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHH------TT----------
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhh------cC----------
Confidence 6 699999999999999988753332211 1233344444 32 444444444443322211 11
Q ss_pred CCCCCCCHHHHHHHHhccC
Q 010888 457 PQIGPIRPEDVEIALKNTR 475 (498)
Q Consensus 457 ~~~~~It~eD~~~AL~~~~ 475 (498)
...|+.+|+..++..+-
T Consensus 422 --~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 422 --KDSIEKEHVEEISELFY 438 (456)
T ss_dssp --CSSBCHHHHHHHHHHSC
T ss_pred --CCccCHHHHHHHHHHhc
Confidence 12399999999987653
No 111
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.97 E-value=0.00014 Score=78.68 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=96.1
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHH-------hCCeEEEEecccc
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-------CKTTFFNISASSV 287 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~-------l~~~~i~v~~s~l 287 (498)
.....++|.+...+.|.+.+... ....+.|+|+||+|+|||++|+.+++. .....+.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34567999999999999887421 122467899999999999999999753 2222444433221
Q ss_pred -----chhc----------------ccCc-HHHHHHHHHHHHh-cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHH
Q 010888 288 -----VSKW----------------RGDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 344 (498)
Q Consensus 288 -----~~~~----------------~G~~-~~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll 344 (498)
.... .... ......+...... ..|.+|+|||++... .+
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l 251 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VL 251 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HH
Confidence 0000 0011 1112222222222 267999999997521 11
Q ss_pred HHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEec---CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 010888 345 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVP---LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 421 (498)
Q Consensus 345 ~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~---~Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~s 421 (498)
+.+ .....||.||..+..... . . ...+.++ ..+.++-.+++...+.............+++++.|..
T Consensus 252 ---~~l---~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 ---KAF---DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp ---HTT---CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred ---HHh---cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 112 122456667765332110 0 0 2233443 4688888899988775422222334677888888754
Q ss_pred HHHHHHH
Q 010888 422 GSDIRLV 428 (498)
Q Consensus 422 ~~dL~~L 428 (498)
-.|+.+
T Consensus 322 -Lal~~~ 327 (591)
T 1z6t_A 322 -LVVSLI 327 (591)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 344443
No 112
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.79 E-value=0.00045 Score=80.51 Aligned_cols=178 Identities=10% Similarity=0.035 Sum_probs=102.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCeEEEEec
Q 010888 212 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISA 284 (498)
Q Consensus 212 ~~~~~~~~IvG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l-------~~~~i~v~~ 284 (498)
..+.....++|.+..+++|.+.+... ....+-+.|+|+.|+|||+||+.+++.. ...++.++.
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 34455677999999999999887431 1223568899999999999999988752 222344544
Q ss_pred cccch------------h---------cccCcHHHHHHHHHHHHhc--CCeEEEEcCccchhhhccccchhhHHHHHHHH
Q 010888 285 SSVVS------------K---------WRGDSEKLIKVLFELARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKT 341 (498)
Q Consensus 285 s~l~~------------~---------~~G~~~~~l~~~f~~a~~~--~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 341 (498)
+.... . ........+...+...... ++.+|+||+++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 33100 0 0011122233333333232 37899999997531
Q ss_pred HHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecC-CCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC
Q 010888 342 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL-PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY 420 (498)
Q Consensus 342 ~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~-Pd~~eR~~IL~~~l~~~~~~~~~~l~~La~~t~g~ 420 (498)
.++.+. ....||.||..+..... . ..-...+.++. .+.++-.+++................++++++.|.
T Consensus 250 ----~~~~~~---~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 ----VLKAFD---NQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp ----HHTTTC---SSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred ----HHHhhc---CCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 112121 22346667765533211 0 11234566665 78888889998877544333334467788888876
Q ss_pred cHHHHHH
Q 010888 421 SGSDIRL 427 (498)
Q Consensus 421 s~~dL~~ 427 (498)
.- .|+.
T Consensus 321 PL-al~~ 326 (1249)
T 3sfz_A 321 PL-VVSL 326 (1249)
T ss_dssp HH-HHHH
T ss_pred HH-HHHH
Confidence 43 3443
No 113
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.72 E-value=1.4e-05 Score=82.31 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=65.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccchhcccCcHHHHHHHHHHHHhcCCeEEEEcCccchhh-hc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR 326 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~~~~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l~~-~r 326 (498)
.+++..++|+||||+||||++++++...+..++.+...+- .....+.. .....++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~------~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGV------AIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGG------GTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHH------hcchhHHHHHHHHHHHHHHh
Confidence 5666789999999999999999999998777655433221 00111111 12336789999998865 22
Q ss_pred cccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHh--cccceeE
Q 010888 327 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRIL 382 (498)
Q Consensus 327 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~--Rf~~~i~ 382 (498)
.-....... ....+...++|. +.|+.+||+++.+ +++++ |++..++
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~ 281 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEY 281 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSC
T ss_pred hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHH
Confidence 111101100 123344445542 3467788888887 45554 5544333
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.70 E-value=0.00037 Score=64.83 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=33.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
...+..-++|.||||+|||++++.++...+.+.++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566678999999999999999999986677888887654
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.68 E-value=0.00027 Score=66.10 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..++..++|.||||+|||++++.++... +.+++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4556779999999999999999999654 555655553
No 116
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.65 E-value=0.00016 Score=73.74 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=53.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------cccCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------~~G~~~~~l~~~f~~a~ 307 (498)
++++..-++|+||||+|||+|+..++..+ +.++++++..+.... .....+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45666789999999999999999999875 667777876543210 01122333333333334
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 56789999999998875
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.64 E-value=0.00021 Score=73.13 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----c------------cCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----R------------GDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~----~------------G~~~~~l~~~f~~a~ 307 (498)
++++..-++|+||||+|||++|..++... +.++++++........ . ...+..+..+-...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 35566789999999999999999998765 6678888765422111 0 112233333323334
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...+.+|+||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 46789999999999874
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.62 E-value=0.00014 Score=68.93 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=50.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH--h-------CCeEEEEeccccc--h------hccc---------------C
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASSVV--S------KWRG---------------D 294 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~--l-------~~~~i~v~~s~l~--~------~~~G---------------~ 294 (498)
..++..-++|+||||+|||++++.++.. . +...++++..... . ...| .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 3556678999999999999999999985 3 4567777765410 0 0001 0
Q ss_pred -cHH---HHHHHHHHHHhcCCeEEEEcCccchhh
Q 010888 295 -SEK---LIKVLFELARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 295 -~~~---~l~~~f~~a~~~~p~VL~IDEiD~l~~ 324 (498)
... .+..+........|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 122233444456789999999988764
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.59 E-value=0.00019 Score=72.11 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=52.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccc--h------hccc----------------
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV--S------KWRG---------------- 293 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~--~------~~~G---------------- 293 (498)
..++..-++|+||||+|||+++..++... +.+.++++..... . ...|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 35566789999999999999999999875 5677888775421 0 0000
Q ss_pred CcH---HHHHHHHHHHHh-cCCeEEEEcCccchhhh
Q 010888 294 DSE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 294 ~~~---~~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 325 (498)
..+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 111 122333344444 67899999999998753
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.56 E-value=0.00017 Score=73.35 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=51.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----ccc------------CcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----WRG------------DSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----~~G------------~~~~~l~~~f~~a~ 307 (498)
..++..-++|+||||+|||+++..++... +.+.++++....... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45566789999999999999999998765 567777776432211 011 12222222333344
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 121
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.55 E-value=0.00037 Score=70.54 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=52.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccch--------hccc----------------
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS--------KWRG---------------- 293 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~~--------~~~G---------------- 293 (498)
..++..-++|+||||+|||+++..++... +.+.++++...... ...|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45666779999999999999999999863 55777887654210 0000
Q ss_pred CcH---HHHHHHHHHHHh--cCCeEEEEcCccchhhh
Q 010888 294 DSE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 294 ~~~---~~l~~~f~~a~~--~~p~VL~IDEiD~l~~~ 325 (498)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011 112223344444 67899999999998754
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.49 E-value=0.00036 Score=65.37 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+..-+.|.||+|+||||+++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35566789999999999999999999854
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.46 E-value=8.7e-05 Score=67.02 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..++|.|+||+||||+++.+++.++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 568999999999999999999999998887765433
No 124
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.45 E-value=0.0027 Score=68.26 Aligned_cols=166 Identities=12% Similarity=-0.010 Sum_probs=89.4
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHH----HhCCe---EEEEeccccc-----
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT----ECKTT---FFNISASSVV----- 288 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~----~l~~~---~i~v~~s~l~----- 288 (498)
+|.+..+++|.+.+... .....+.|.|+|+.|+|||+||+.+++ ..... .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999999887431 012246788999999999999999997 33222 2333333310
Q ss_pred -------hhcc------------cCcHHHHHHHHHHHHhc-CCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhh
Q 010888 289 -------SKWR------------GDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 348 (498)
Q Consensus 289 -------~~~~------------G~~~~~l~~~f~~a~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld 348 (498)
.... ......+...+...-.. ++.+|+||+++... .+ .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--------------~~--~~~~-~- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------------TI--RWAQ-E- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------------HH--HHHH-H-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--------------hh--cccc-c-
Confidence 0000 00111222333333334 37999999997641 11 1111 1
Q ss_pred CCccCCCcEEEEEEeCCCCCCCHHHHhcccceeEecCCCHHHHHHHHHHhcCCCCCCCC--CCHHHHHHHhcCCc
Q 010888 349 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES--LPYDLLVERTEGYS 421 (498)
Q Consensus 349 ~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~--~~l~~La~~t~g~s 421 (498)
.+ ..||.||....... . .......+.++..+.++-.+++..+....+...+ ....++++++.|..
T Consensus 264 ----~g--s~ilvTTR~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ----LR--LRCLVTTRDVEISN-A-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ----TT--CEEEEEESBGGGGG-G-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ----CC--CEEEEEcCCHHHHH-H-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 12 34566776532111 0 0012245778888999999999988543321010 11345666677643
No 125
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.44 E-value=0.00038 Score=66.22 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc-------cchhcccCc-----HHHHHHHHHHHHh----cCC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS-------VVSKWRGDS-----EKLIKVLFELARH----HAP 311 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~-------l~~~~~G~~-----~~~l~~~f~~a~~----~~p 311 (498)
..-++++||+|+|||+++..++.++ +...+.++... +.+. .|.. ......+++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3567889999999999999888876 55666664322 1111 1100 0011234444443 357
Q ss_pred eEEEEcCccch
Q 010888 312 STIFLDEIDAI 322 (498)
Q Consensus 312 ~VL~IDEiD~l 322 (498)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999865
No 126
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.43 E-value=0.00031 Score=85.17 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=56.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhcc----------------cCcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------GDSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~~----------------G~~~~~l~~~f~~a~ 307 (498)
..++...++|+||||||||++|.+++.+. |.+.++++..+...... +..+...+-.....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46677899999999999999999998765 78888888876543322 112222333333444
Q ss_pred hcCCeEEEEcCccchhhh
Q 010888 308 HHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~~ 325 (498)
...|++|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 567999999999999654
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.43 E-value=0.00033 Score=71.38 Aligned_cols=78 Identities=26% Similarity=0.318 Sum_probs=51.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchhc----cc-----------CcHHHHHHHHH-HHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG-----------DSEKLIKVLFE-LAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~~----~G-----------~~~~~l~~~f~-~a~ 307 (498)
+.++...++|+||||+|||++|..++... +.+.++++........ .| .....+..+.. ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 35566789999999999999999998765 6678888774322110 00 11122222332 334
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999874
No 128
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.38 E-value=0.0013 Score=69.19 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=34.8
Q ss_pred CCCCCCCcccc-CcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 211 GSPDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 211 ~~~~~~~~~Iv-G~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+.+|+++- ++..+...+...+.. ....++|.|+||||||+++.+++..+
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44567777774 455555555544422 12389999999999999999999877
No 129
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.38 E-value=0.0032 Score=67.72 Aligned_cols=75 Identities=12% Similarity=0.236 Sum_probs=53.1
Q ss_pred eEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC--CCCHHHHhcccceeEecCCCHH
Q 010888 312 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 389 (498)
Q Consensus 312 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~--~Ld~al~~Rf~~~i~~~~Pd~~ 389 (498)
-+|+|||+..+..... +.+...+..... ..+.-.|.+|.+|.+|. .++..+++-|...+.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar--~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ--KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH--HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH--HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998865321 112222222222 22445588899999997 7999999999999999999998
Q ss_pred HHHHHHHH
Q 010888 390 ARRAMFES 397 (498)
Q Consensus 390 eR~~IL~~ 397 (498)
+...+|..
T Consensus 414 Dsr~ILd~ 421 (574)
T 2iut_A 414 DSRTILDQ 421 (574)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCc
Confidence 88888743
No 130
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.37 E-value=0.00011 Score=66.95 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+.++|.||||+||||+++.+++.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46799999999999999999999999988754
No 131
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.36 E-value=0.0018 Score=61.21 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVA 272 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia 272 (498)
...++.-+.|.||+|+||||+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34566789999999999999999998
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.30 E-value=0.0004 Score=63.90 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
.-++++||+|+|||+++..++.++ +.+.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457899999999999996666554 55555443
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.29 E-value=0.0028 Score=66.25 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch-----------
Q 010888 224 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------- 289 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------- 289 (498)
+.+++.+.+.+...+...........++.-+++.|++|+||||++..+|..+ |..+..+.+.....
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 3455555554444332211111112346788999999999999999999877 56666665432210
Q ss_pred --------h-cccCcHHHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 290 --------K-WRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 290 --------~-~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
. ............+..+....+.+++||....+
T Consensus 153 ~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 153 RYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp GGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred hcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 0 11123344556677777777899999988654
No 134
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.00016 Score=67.01 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+...++|.||||+||||+++.+++.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4456899999999999999999999999888654
No 135
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.25 E-value=0.00064 Score=70.34 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=49.5
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccccch--------hcccC--------------
Q 010888 246 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS--------KWRGD-------------- 294 (498)
Q Consensus 246 ~~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~l~~--------~~~G~-------------- 294 (498)
+...+..-++|+||||+|||+|++.++-.. +...++++..+... ...|-
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 345666789999999999999999776433 34577777654210 00010
Q ss_pred --c---HHHHHHHHHHHHhcCCeEEEEcCccchhhh
Q 010888 295 --S---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 295 --~---~~~l~~~f~~a~~~~p~VL~IDEiD~l~~~ 325 (498)
. ...+..+........|.+|+||++-.+...
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 0 111222333444567899999999887643
No 136
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.24 E-value=0.0011 Score=67.29 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCeEEEEeccc
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 286 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------~~~~i~v~~s~ 286 (498)
..++..-+.|+||||+|||+|++.++... +...++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 35666789999999999999999999876 24557776644
No 137
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.23 E-value=0.0012 Score=65.97 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=49.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCeEEEEeccccchh----ccc------------CcHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK----WRG------------DSEKLIKVLFEL 305 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l-----~~~~i~v~~s~l~~~----~~G------------~~~~~l~~~f~~ 305 (498)
+.++. -++|+||||+|||+|+..++... +...++++..+-... -.| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34555 68999999999999988876654 567888887543211 001 122220222222
Q ss_pred ---HHhcCCeEEEEcCccchhh
Q 010888 306 ---ARHHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 306 ---a~~~~p~VL~IDEiD~l~~ 324 (498)
.+...|.+|+||-+..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2456799999999999975
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.0025 Score=60.05 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
...+...++|.||||+|||+++..++... +.+.++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45666789999999999999998887644 556666654
No 139
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.23 E-value=0.00075 Score=67.37 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------------C----CeEEEEeccccc--hh------ccc------
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------------K----TTFFNISASSVV--SK------WRG------ 293 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---------------~----~~~i~v~~s~l~--~~------~~G------ 293 (498)
..++..-++|+||||+|||+++..++... | .+.++++..... .. ..|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 35666779999999999999999998753 2 577777765431 10 000
Q ss_pred ----------CcHH---HHHHHHHHHHh-cCCeEEEEcCccchhhh
Q 010888 294 ----------DSEK---LIKVLFELARH-HAPSTIFLDEIDAIISQ 325 (498)
Q Consensus 294 ----------~~~~---~l~~~f~~a~~-~~p~VL~IDEiD~l~~~ 325 (498)
..+. .+..+...... ..+.+|+||.+..+...
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 0111 12223334444 56789999999998753
No 140
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.15 E-value=0.00027 Score=64.02 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
...++|.|+||+||||+++.+++.++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45799999999999999999999999877654
No 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.13 E-value=0.0015 Score=62.95 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445679999999999999999999999876777777655
No 142
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.13 E-value=0.0003 Score=62.74 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.++|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876554
No 143
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.10 E-value=0.00035 Score=63.04 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988764
No 144
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.09 E-value=0.0086 Score=56.89 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..+++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998876 666554443
No 145
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.08 E-value=0.00044 Score=62.95 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.+..++|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34678999999999999999999999987765
No 146
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.08 E-value=0.00031 Score=62.93 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+++|.|+|||||||+++.+++.+|.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999988754
No 147
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.08 E-value=0.00029 Score=64.04 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.|+|.|+||+|||++++.+++.+|.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 589999999999999999999999887643
No 148
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.06 E-value=0.00092 Score=80.14 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=53.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----hccc------------CcHHHHHHHHHHHH
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRG------------DSEKLIKVLFELAR 307 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----~~~G------------~~~~~l~~~f~~a~ 307 (498)
...++..++|+||||+|||++|..+|... +.++++++..+... ...| ..+.....+-...+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35677889999999999999999998876 55788887654431 1111 11222222222233
Q ss_pred hcCCeEEEEcCccchhh
Q 010888 308 HHAPSTIFLDEIDAIIS 324 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l~~ 324 (498)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999874
No 149
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.05 E-value=0.00034 Score=63.93 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-hCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE-CKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~-l~~~~i~v 282 (498)
+..++|+|+|||||||+++.+++. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 68776644
No 150
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.04 E-value=0.00049 Score=61.65 Aligned_cols=29 Identities=31% Similarity=0.750 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
..+.|.||+|+||||+++.++..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46899999999999999999999997655
No 151
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.00 E-value=0.00047 Score=69.21 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
..++|.||+|+|||++++.+|++++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 47899999999999999999999998888886543
No 152
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.99 E-value=0.00093 Score=65.90 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.+..++|.||||+||||+++.++.+++..++.+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 456789999999999999999999986566777764443
No 153
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.97 E-value=0.00047 Score=62.69 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3568999999999999999999999987654
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.96 E-value=0.00046 Score=62.90 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 445678999999999999999999987777777765443
No 155
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.96 E-value=0.0005 Score=62.79 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..++|.|+||+||||+++.+++.++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999999876654
No 156
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.95 E-value=0.00051 Score=63.40 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34689999999999999999999999887654
No 157
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.95 E-value=0.013 Score=62.38 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=50.8
Q ss_pred Ce-EEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCC--CCCHHHHhcccceeEecCCC
Q 010888 311 PS-TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPD 387 (498)
Q Consensus 311 p~-VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~--~Ld~al~~Rf~~~i~~~~Pd 387 (498)
|. +|+|||+..+.... .......+..+... .+.-.+-+|.+|.+|. .++..+++.+...+.+...+
T Consensus 297 P~ivlvIDE~~~ll~~~------~~~~~~~l~~Lar~-----gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s 365 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV------GKKVEELIARLAQK-----ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS 365 (512)
T ss_dssp CEEEEEEETHHHHHHHH------HHHHHHHHHHHHHH-----CGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSS
T ss_pred CcEEEEEeCHHHHHhhh------hHHHHHHHHHHHHH-----hhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCC
Confidence 44 89999998776421 01111222222211 1222477788998886 58888999998889999999
Q ss_pred HHHHHHHHHH
Q 010888 388 TEARRAMFES 397 (498)
Q Consensus 388 ~~eR~~IL~~ 397 (498)
..+...++..
T Consensus 366 ~~dsr~ilg~ 375 (512)
T 2ius_A 366 KIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 9999888864
No 158
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.93 E-value=0.00047 Score=61.25 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
-++|.||||+||||+++.+ +.+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8889887654
No 159
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.92 E-value=0.00055 Score=66.15 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
-++|.||||+||||+|+.+|++++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999998877654
No 160
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.91 E-value=0.00064 Score=61.62 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..++|.|+||+||||+++.+++.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 468999999999999999999999876653
No 161
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.91 E-value=0.0007 Score=60.55 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..++|.|+||+|||++++.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988764
No 162
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.91 E-value=0.00077 Score=63.20 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..++|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999999876654
No 163
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.0061 Score=57.45 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~----l~~~~i~v~~ 284 (498)
+.++..-++|+|+||+|||+++..++.. .+.+.++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4566678999999999999999887643 2667777664
No 164
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.90 E-value=0.0059 Score=63.68 Aligned_cols=73 Identities=18% Similarity=0.112 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----------h------c---cc-CcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---RG-DSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------~------~---~G-~~~~~l~~~f~~a 306 (498)
++.-+++.||+|+||||++..+|..+ |..+..+++.-... . + .+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45778999999999999999999876 56665555431110 0 0 01 1222234445555
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999988654
No 165
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.0018 Score=62.62 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCeEEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~---l~~~~i~v~~s~l~ 288 (498)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 356899999999999999999998 68888766655443
No 166
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.89 E-value=0.0082 Score=55.75 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc---------ccchhcc-------------cC----cHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS---------SVVSKWR-------------GD----SEKLIKVL 302 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s---------~l~~~~~-------------G~----~~~~l~~~ 302 (498)
..+++|+++|.|||++|-++|-+. |.++..+... .+..... .. ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468899999999999999998876 7777666221 1222210 00 11223334
Q ss_pred HHHHHh----cCCeEEEEcCccchhhhccccchhhHHHHHHHHHHHHHhhCCccCCCcEEEEEEeCCCCCCCHHHHhccc
Q 010888 303 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 378 (498)
Q Consensus 303 f~~a~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~viVIaaTn~p~~Ld~al~~Rf~ 378 (498)
+..++. ....+|+|||+.....-. ... .+.++..+. .+....-||.|+|. .++++...-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g---~l~-------~~ev~~~l~---~Rp~~~~vIlTGr~---ap~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD---YLP-------LEEVISALN---ARPGHQTVIITGRG---CHRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT---SSC-------HHHHHHHHH---TSCTTCEEEEECSS---CCHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC---CCC-------HHHHHHHHH---hCcCCCEEEEECCC---CcHHHHHhCc
Confidence 444433 457899999996543211 000 122444444 33444567778886 3667777665
Q ss_pred ceeEe
Q 010888 379 KRILV 383 (498)
Q Consensus 379 ~~i~~ 383 (498)
.+-++
T Consensus 173 ~VTem 177 (196)
T 1g5t_A 173 TVSEL 177 (196)
T ss_dssp EEEEC
T ss_pred ceeee
Confidence 54444
No 167
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.88 E-value=0.0034 Score=62.55 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=46.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh--------------------cccCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------------WRGDSEKLIKVLFEL 305 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~--------------------~~G~~~~~l~~~f~~ 305 (498)
.++.-++|.||+|+||||++..+|..+ +..+..+++...... ..+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 455678999999999999999999876 455555544211100 011222222334455
Q ss_pred HHhcCCeEEEEcCccc
Q 010888 306 ARHHAPSTIFLDEIDA 321 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~ 321 (498)
+....|.+|+||+...
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5667789999998854
No 168
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.85 E-value=0.0044 Score=59.07 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
..+++.||+|+|||.++.+++...+.+.+.+.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3599999999999999999999887666666543
No 169
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.84 E-value=0.00059 Score=61.62 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
..++|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 56899999999999999999999998876
No 170
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.84 E-value=0.001 Score=59.71 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..++|.||+|+||||+++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4578999999999999999999998876553
No 171
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.82 E-value=0.00077 Score=73.03 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..++|.||||||||+++.+++..+ +.++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 578999999999999999998865 566655543
No 172
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.82 E-value=0.00096 Score=61.58 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..++|.|++|+||||+++.+++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877664
No 173
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.80 E-value=0.00072 Score=61.83 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5699999999999999999999999766544
No 174
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.80 E-value=0.00071 Score=63.13 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.||||+||||+++.++++++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998877655
No 175
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.79 E-value=0.00073 Score=60.66 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-HhCCeE
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT-ECKTTF 279 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~-~l~~~~ 279 (498)
.-++|.|+||+||||+++.+++ ..+..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4689999999999999999998 455433
No 176
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.79 E-value=0.00078 Score=60.00 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999877643
No 177
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.78 E-value=0.00085 Score=60.80 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++|.|+||+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 178
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.78 E-value=0.00085 Score=64.34 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
++..++|.||||+||||+++.+++.++.+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999998776644
No 179
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.78 E-value=0.00072 Score=63.81 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..++|.|+||+||||+++.+++.++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35799999999999999999999999876644
No 180
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.78 E-value=0.00088 Score=61.75 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
+..|+|.|+||+||||+++.+++.++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 356899999999999999999999998666543
No 181
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.78 E-value=0.0012 Score=59.94 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..++|.|+||+||||+++.+++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5689999999999999999999999766644
No 182
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.77 E-value=0.00073 Score=62.97 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877654
No 183
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.76 E-value=0.0012 Score=62.62 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..++|.|+||+||||+++.++++++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999876654
No 184
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.74 E-value=0.0013 Score=60.86 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
++..+.|.||+|+||||+++.++..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3467899999999999999999999976544
No 185
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.0021 Score=65.44 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=44.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec-cccc---------hhcccCcHHHHHHHHHHHHhcCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA-SSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFL 316 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~-s~l~---------~~~~G~~~~~l~~~f~~a~~~~p~VL~I 316 (498)
...++|.||+|+||||+.++++..+ +..++.+.- .++. ....+.........+..+-...|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3478999999999999999998866 334443321 1111 0011111112334666777789999999
Q ss_pred cCcc
Q 010888 317 DEID 320 (498)
Q Consensus 317 DEiD 320 (498)
||.-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9994
No 186
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.68 E-value=0.0011 Score=66.17 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
+.-++|.||+|+|||+|+..+|+.++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 3568899999999999999999999988877765444
No 187
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.68 E-value=0.0015 Score=61.90 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=30.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
...++-++|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 34456788999999999999999999998754 4555544
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.66 E-value=0.0058 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=18.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKA 270 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAra 270 (498)
.++.-+.|.||+|+||||+++.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3446789999999999999994
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.66 E-value=0.0011 Score=62.32 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..++|.||||+||||+++.+++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3579999999999999999999999976554
No 190
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.66 E-value=0.012 Score=57.30 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-++|+||+|+|||+++..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556789999999999999999998744
No 191
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.64 E-value=0.00094 Score=67.77 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=37.5
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..+.+.+.+.+.+...+. .....+++|.|+||+|||+++++++..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--------~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--------DNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--------TCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--------cCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3455566666665543221 1122469999999999999999999999888755
No 192
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.62 E-value=0.0013 Score=61.64 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..++|.|+||+||||+++.+++.++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.62 E-value=0.002 Score=58.25 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
++..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34568899999999999999999988 88988887543
No 194
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.58 E-value=0.013 Score=61.48 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..++.-++|.|+||+|||+++..++... |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36677789999999999999999998754 557777664
No 195
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.57 E-value=0.0033 Score=61.08 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=43.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEecccc---c--------hhcccCcHHHHHHHHHHHHhcCCeE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV---V--------SKWRGDSEKLIKVLFELARHHAPST 313 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l---~--------~~~~G~~~~~l~~~f~~a~~~~p~V 313 (498)
.+...++|.||+|+||||++++++... ...++.. ...+ . ....|.....++..+..+-...|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc-CCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 445679999999999999999999865 2222221 1110 0 0001101112344555565668999
Q ss_pred EEEcCcc
Q 010888 314 IFLDEID 320 (498)
Q Consensus 314 L~IDEiD 320 (498)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999984
No 196
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.56 E-value=0.0017 Score=60.88 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccccc
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 288 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l~ 288 (498)
.++|.||||+||+|.|+.|++.++.+.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3788999999999999999999987654 444443
No 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.56 E-value=0.035 Score=63.71 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=35.0
Q ss_pred cCcHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 221 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 221 vG~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
+|.+..+++|.+.+... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999998877421 12357899999999999999999863
No 198
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.54 E-value=0.0019 Score=59.57 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
.++..+.|.||+|+||||+++.++..+ |...+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 445678899999999999999999988 55544555433
No 199
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.54 E-value=0.0017 Score=62.07 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
.+..+.|.||+|+||||+++.+++.+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3467999999999999999999999987544
No 200
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.53 E-value=0.0021 Score=58.35 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
.+.|.|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88887664
No 201
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.51 E-value=0.0018 Score=60.37 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.|+||+||||+++.+++.++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 488999999999999999999999877654
No 202
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.50 E-value=0.0024 Score=59.75 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..+.|.||+|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999977653
No 203
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.49 E-value=0.0018 Score=59.18 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.+.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987653
No 204
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.49 E-value=0.016 Score=60.52 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 46677789999999999999999998754 567777765
No 205
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.45 E-value=0.0022 Score=58.86 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l-~~~~i~v~ 283 (498)
+..+.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4578999999999999999999998 57777654
No 206
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.42 E-value=0.0023 Score=60.37 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998765543
No 207
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.41 E-value=0.0027 Score=57.85 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
+.|.|++|+||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88887554
No 208
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.40 E-value=0.0014 Score=59.35 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEec
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK---TTFFNISA 284 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~ 284 (498)
.++|.|+||+||||+++.+++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 588999999999999999999885 33555543
No 209
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.33 E-value=0.04 Score=54.36 Aligned_cols=59 Identities=24% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 225 NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 225 ~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
.+++.+.+.+...+..... .....++..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 80 ~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp THHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4555555555443322211 1112345688999999999999999998765 546665554
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.33 E-value=0.0019 Score=59.45 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.+.|.|++|+||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887776543
No 211
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.30 E-value=0.0029 Score=58.12 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
.+.|.|++|+|||++++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998877543
No 212
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.28 E-value=0.0034 Score=60.06 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
+..+.|.||||+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3568999999999999999999999977654
No 213
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0033 Score=60.76 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
...+.|.|++|+||||+++.++..++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45799999999999999999999999987764
No 214
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.003 Score=58.14 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.-|+|.|+||+||||+++.+++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 568999999999999999999998763
No 215
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.23 E-value=0.0052 Score=62.81 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=43.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEecc-cc--------chh-cccCcHHHHHHHHHHHHhcCCeEE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SV--------VSK-WRGDSEKLIKVLFELARHHAPSTI 314 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~s-~l--------~~~-~~G~~~~~l~~~f~~a~~~~p~VL 314 (498)
.+...++|.||+|+||||++++++..+. ..++.+... ++ ... ..|.....+...+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 4456799999999999999999998652 333333211 10 000 001011122345555556789999
Q ss_pred EEcCcc
Q 010888 315 FLDEID 320 (498)
Q Consensus 315 ~IDEiD 320 (498)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999994
No 216
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.17 E-value=0.003 Score=58.47 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..+.|+|++||||||+++.+++.+|.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3477999999999999999999989877654
No 217
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.17 E-value=0.0017 Score=64.89 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~l 287 (498)
.-++|.||+|+|||+++..+|+.++..++..+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 457899999999999999999999887776665433
No 218
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.16 E-value=0.0039 Score=57.04 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+..|.|.|++|+||||+++.+++. |.+++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 3457899999999999999999998 7766643
No 219
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.14 E-value=0.0028 Score=63.87 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 285 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~s 285 (498)
+.++|.||+|+|||+|+..+|++++.+++..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 5689999999999999999999999888776543
No 220
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.12 E-value=0.0015 Score=60.34 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
+.-++|.|+||+||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999987543
No 221
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.12 E-value=0.0049 Score=59.28 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
+...+.|.||+|+||||+++.+++.+|.+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3457889999999999999999999998765
No 222
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.11 E-value=0.0034 Score=57.96 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.+.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 578999999999999999988 8877664
No 223
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.10 E-value=0.054 Score=50.10 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=33.5
Q ss_pred CCCccccCcHHHHHHHHHHHhc-cccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 215 VKWESIKGLENAKRLLKEAVVM-PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~-~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+|+++.=.+.+.+.+.+.-.. +..++...-......+.+++.+|+|+|||..+-..+-+.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 4577775556666666542111 111111100011123679999999999998776655444
No 224
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.09 E-value=0.0035 Score=58.00 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++.-++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45567799999999999999999999884
No 225
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.08 E-value=0.0052 Score=55.74 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.++..++|.|+||+||||+++.++..+ +.++..++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345678999999999999999999987 4445555543
No 226
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.08 E-value=0.05 Score=54.05 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+..+..-++|.|+||+|||+++..+|... +.+.++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 35666789999999999999999998765 467777764
No 227
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.07 E-value=0.015 Score=53.90 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHHh--CCeEEEEecc
Q 010888 251 WKGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISAS 285 (498)
Q Consensus 251 ~~~vLL~GppGtGKT-~lAraia~~l--~~~~i~v~~s 285 (498)
..-.+++||.|+||| .|.+++.+.. +..++.+++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 345788999999999 9999998755 6777777643
No 228
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.06 E-value=0.0057 Score=58.62 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCe--------EEEEeccccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSVV 288 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~--------~i~v~~s~l~ 288 (498)
+..|.|.|++|+||||+++.++..++.+ ...++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3568899999999999999999999876 3456666554
No 229
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.05 E-value=0.0018 Score=59.88 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+.-|+|.|+||+||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999874
No 230
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.04 E-value=0.0058 Score=57.93 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
..++..+.|.|++|+|||++++.++..+|.+++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4455679999999999999999999999987664
No 231
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.99 E-value=0.032 Score=51.11 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.+|+|+|||.++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999988887654
No 232
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.94 E-value=0.0045 Score=62.22 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccc-cch----h---cccCcHHHHHHHHHHHHhcCCeEEEEcCcc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVS----K---WRGDSEKLIKVLFELARHHAPSTIFLDEID 320 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~-l~~----~---~~G~~~~~l~~~f~~a~~~~p~VL~IDEiD 320 (498)
...++|.||+|+||||++++++.... ...+.+.... +.- . +........+..+..+....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 45799999999999999999998763 2344444321 110 0 110011233445566667889999999985
Q ss_pred c
Q 010888 321 A 321 (498)
Q Consensus 321 ~ 321 (498)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 4
No 233
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.92 E-value=0.024 Score=64.51 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.+..-++|.||.|+||||+.+.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3456789999999999999999875
No 234
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.90 E-value=0.0039 Score=57.66 Aligned_cols=34 Identities=26% Similarity=0.175 Sum_probs=27.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh-CCeEEE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFN 281 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l-~~~~i~ 281 (498)
..++.-+.|.|++|+||||+++.++..+ +.+++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3445668899999999999999999987 555443
No 235
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.90 E-value=0.0071 Score=56.34 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..+.|.|++|+||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5688999999999999999998 88776644
No 236
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.87 E-value=0.0016 Score=67.23 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
.-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 467899999999999999999999987766554
No 237
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.83 E-value=0.007 Score=56.30 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
..+.|.|++|+|||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999877654
No 238
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.82 E-value=0.0051 Score=56.44 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
++.-+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44678999999999999999999876
No 239
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.74 E-value=0.059 Score=56.99 Aligned_cols=38 Identities=8% Similarity=-0.113 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
+..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 35666789999999999999999998765 456777765
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.74 E-value=0.0064 Score=55.15 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+.-+.|.||+|+||||+++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998764
No 241
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.73 E-value=0.008 Score=55.83 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l 287 (498)
.++..++|.|++|+||||+++.++..+ |.+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 344678899999999999999999976 456777765433
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.71 E-value=0.0059 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 446688999999999999999999875
No 243
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.68 E-value=0.043 Score=55.28 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+..+..-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 35666779999999999999999998864 677776654
No 244
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.65 E-value=0.014 Score=60.59 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
.+.-|+|.|+||+||||+++.++..++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3456889999999999999999999886554
No 245
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.64 E-value=0.0066 Score=61.23 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
.-++|.||+|+|||++|+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999976665543
No 246
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.64 E-value=0.0089 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
..+.|.||+|+||||+++.++...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35789999999999999999986643
No 247
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.63 E-value=0.059 Score=49.92 Aligned_cols=61 Identities=20% Similarity=0.038 Sum_probs=32.4
Q ss_pred CCCCccccCcHHHHHHHHHHHhc-cccCchhhccCCCCCceEEEEcCCCCcHHHHH-HHHHHH
Q 010888 214 DVKWESIKGLENAKRLLKEAVVM-PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA-KAVATE 274 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~-~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lA-raia~~ 274 (498)
..+|+++.-.+.+.+.+.+.-.. +..++...-......+++++.+|+|+|||..+ -.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 35577775556666666543110 11111110001122367999999999999873 334443
No 248
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.62 E-value=0.0073 Score=59.16 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCeEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC-KTTFF 280 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l-~~~~i 280 (498)
.-++|.|+||+||||+++.+++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999974 55444
No 249
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.58 E-value=0.032 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHH-HHHH
Q 010888 252 KGILLFGPPGTGKTMLAKA-VATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAra-ia~~ 274 (498)
+++++.+|+|+|||..+-. +...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 6799999999999987433 3443
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.57 E-value=0.0083 Score=54.94 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
++.-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999863
No 251
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.57 E-value=0.047 Score=62.19 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~ 273 (498)
+.-++|.||.|+||||+.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999954
No 252
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.56 E-value=0.0067 Score=56.55 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
..+.++|.||||+|||++|..++++.. +++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 346899999999999999999999876 6655443
No 253
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.55 E-value=0.0098 Score=58.21 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
+..|.|.|++|+||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3568899999999999999999 678766543
No 254
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.53 E-value=0.1 Score=55.38 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=45.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccc-------------------hhccc-CcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-------------------SKWRG-DSEKLIKVLFEL 305 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~-------------------~~~~G-~~~~~l~~~f~~ 305 (498)
.++..|+|.|+||+||||++..+|..+ |..+..+++.-.. ....+ .........+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999876 6666666552110 00001 112222334455
Q ss_pred HHhcCCeEEEEcCccch
Q 010888 306 ARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 306 a~~~~p~VL~IDEiD~l 322 (498)
+......+++||-...+
T Consensus 179 ~~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHHTTCCEEEEEECCCC
T ss_pred HHHCCCcEEEEeCCCCc
Confidence 54455689999987554
No 255
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.51 E-value=0.024 Score=52.30 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
..-.+++||.|+|||+.+-.++.++ +..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3467889999999999988888876 55555553
No 256
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.51 E-value=0.087 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
..+++.||+|||||++...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 6799999999999987665543
No 257
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.50 E-value=0.00064 Score=57.25 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhhhhhhhhhhccccCCCcee--eeecCCCcccceeeEEEec--ccchhhhhhh
Q 010888 14 IRALTKCLKEGIITSRFIISKFIIGPPHAF--FYSFGSPPFQFSLAIQLAG--CCSVETERER 72 (498)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 72 (498)
+..+..|++.+|.+++-+|.-|+.|.++-+ +|..|+..+..|++|.++| |..-+-|+++
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar 74 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESAR 74 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 566889999999999999999999999988 9999999999999999998 6666666655
No 258
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.47 E-value=0.0094 Score=55.40 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
No 259
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.46 E-value=0.089 Score=54.93 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 247 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 247 ~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+..++.-++|.|+||+|||+++..+|... |.++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 46677789999999999999999998765 677777765
No 260
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.46 E-value=0.041 Score=57.28 Aligned_cols=36 Identities=33% Similarity=0.252 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
++..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999999876 4566666553
No 261
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.44 E-value=0.05 Score=56.39 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
...++|.||+|+||||+.++++..+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 35689999999999999999999873
No 262
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.44 E-value=0.04 Score=60.27 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHhccccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecc
Q 010888 223 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 285 (498)
Q Consensus 223 ~~~~k~~L~~~i~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s 285 (498)
.++.++.+...+.. ..-.||+||||||||+++-.+..++ +.++..+..+
T Consensus 191 N~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 45666777665522 1247999999999998665555444 5555555543
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.43 E-value=0.01 Score=54.62 Aligned_cols=28 Identities=39% Similarity=0.691 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
+.|+|.||+|+|||+|++.+..+....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4589999999999999999998874333
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.41 E-value=0.0099 Score=54.89 Aligned_cols=27 Identities=33% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
++.-+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999887
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.40 E-value=0.059 Score=56.95 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4456678899999999999999999876
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.39 E-value=0.0095 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.++.-+.|.||+|+||||+++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456788999999999999999999874
No 267
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.37 E-value=0.072 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.++.-+.|.||+|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456778999999999999999999876
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.34 E-value=0.0089 Score=55.19 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+++.+.|.||+|+||||+++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346789999999999999999998763
No 269
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.30 E-value=0.046 Score=61.19 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=34.1
Q ss_pred CCCCccccCcHHHHHHHHHHHhccccCch-hhccCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 214 DVKWESIKGLENAKRLLKEAVVMPIKYPK-YFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i~~~l~~~~-~~~~~~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+|+++.-.+...+.+.+.-..|..... .+.........+++.||+|+|||+++..+...
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34566655555555555543333322111 11111223357999999999999977777544
No 270
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.29 E-value=0.034 Score=59.37 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
+.-|++.|.||+||||+++.+++.+ +.+...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 3568899999999999999999988 455555665444
No 271
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.27 E-value=0.02 Score=52.69 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
++.-+.|.|++|+||||+++.++..+ +.+++..+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 34568899999999999999999876 566665544
No 272
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.24 E-value=0.049 Score=58.06 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=48.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccchh----------------------c----cc--CcH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------W----RG--DSE 296 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~~----------------------~----~G--~~~ 296 (498)
..+...++|.||+|+|||+|++.++... |.+.+++...+-... + .. ...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 4556779999999999999999998765 445555543221000 0 00 123
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCccch
Q 010888 297 KLIKVLFELARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 297 ~~l~~~f~~a~~~~p~VL~IDEiD~l 322 (498)
...+.++..+....|.+|+||=+..+
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 34455666777788999999954444
No 273
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.22 E-value=0.09 Score=51.85 Aligned_cols=72 Identities=22% Similarity=0.094 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----------h------c---c-cCcHHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---R-GDSEKLIKVLFELAR 307 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------~------~---~-G~~~~~l~~~f~~a~ 307 (498)
+..+++.|++|+||||++..+|..+ +..+..+++.-... . + . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999876 56666665431100 0 0 0 112233345566665
Q ss_pred hcCCeEEEEcCccch
Q 010888 308 HHAPSTIFLDEIDAI 322 (498)
Q Consensus 308 ~~~p~VL~IDEiD~l 322 (498)
.....+++||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 556789999986544
No 274
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.20 E-value=0.091 Score=52.39 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456778999999999999999999876 555555544
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.17 E-value=0.011 Score=53.74 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+-+.|.||+|+||||+++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998763
No 276
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.99 E-value=0.016 Score=61.72 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=43.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEeccc-cchh---c--------ccCcHHHHHHHHHHHHhcCCeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK---W--------RGDSEKLIKVLFELARHHAPSTIF 315 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~s~-l~~~---~--------~G~~~~~l~~~f~~a~~~~p~VL~ 315 (498)
.+.+++|.||+|+||||++++++..+. ...+.+.... +... . .+............+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345799999999999999999998773 3445543321 2100 0 011111223344455567899999
Q ss_pred EcCcc
Q 010888 316 LDEID 320 (498)
Q Consensus 316 IDEiD 320 (498)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99983
No 277
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.94 E-value=0.016 Score=53.88 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
+++-+.|.||+|+|||+|++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998765
No 278
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.88 E-value=0.033 Score=55.12 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhccccCch---hhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 224 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~---~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.+++.+.+.+...+.... ...--..++.-+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4455555555544332221 111013455678899999999999999999876
No 279
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.86 E-value=0.11 Score=58.15 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
++..++|.||.|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999874
No 280
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.84 E-value=0.021 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+...+.|.||.|+||||+++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455678899999999999999999987
No 281
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.83 E-value=0.059 Score=50.66 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
.-.+++||.|+|||+.+-.++.+. +..++.+..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 345689999999999888887766 666666653
No 282
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.82 E-value=0.024 Score=61.68 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 286 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~ 286 (498)
.+..|+|.|.||+||||+++++++.+ |.+++.++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 34678999999999999999999999 99999887543
No 283
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.81 E-value=0.017 Score=54.19 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+||||+++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455678999999999999999999976
No 284
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.80 E-value=0.019 Score=53.20 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.++.-+.|.||+|+||||+++.++....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4456788999999999999999999874
No 285
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.75 E-value=0.017 Score=52.82 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 010888 254 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 286 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l~~~~i~v~~s~ 286 (498)
+|++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887654
No 286
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.73 E-value=0.071 Score=48.60 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKA 270 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAra 270 (498)
+++++.+|+|+|||..+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 6799999999999976543
No 287
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.73 E-value=0.021 Score=54.11 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFN 281 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~ 281 (498)
.-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457889999999999999999999999864
No 288
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.68 E-value=0.02 Score=53.91 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+++.-+.|.||+|+|||||.+.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45566789999999999999999999764
No 289
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.68 E-value=0.088 Score=51.82 Aligned_cols=73 Identities=23% Similarity=0.247 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch----------h------c---cc-CcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------W---RG-DSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~----------~------~---~G-~~~~~l~~~f~~a 306 (498)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... . + .+ ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678888999999999999999866 45555554321000 0 0 01 1122234556666
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
....+.+|+||+...+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5566799999998544
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.67 E-value=0.087 Score=54.86 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=47.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEeccccchh----------------cc---c-CcHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR---G-DSEKLIKVLFE 304 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~s~l~~~----------------~~---G-~~~~~l~~~f~ 304 (498)
.+++.+++.|++|+||||++-.+|..+ |..+..+++.-.... +. + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345788899999999999999998765 667776666421110 00 0 11223355566
Q ss_pred HHHhcCCeEEEEcCccch
Q 010888 305 LARHHAPSTIFLDEIDAI 322 (498)
Q Consensus 305 ~a~~~~p~VL~IDEiD~l 322 (498)
.+......+++||=...+
T Consensus 178 ~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHTTCSEEEEECCCCC
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 666556689999976443
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.63 E-value=0.0091 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
-+.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 292
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.61 E-value=0.026 Score=53.40 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFN 281 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~ 281 (498)
.+.-+.|.||||+||||+++.+++.++ .+++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 445688999999999999999999986 34443
No 293
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.61 E-value=0.077 Score=56.49 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHH--HHHh--CCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAV--ATEC--KTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lArai--a~~l--~~~~i~v~~ 284 (498)
..+...++|.||+|+|||||++.+ +... +..-++++.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345678999999999999999994 4433 444555554
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.53 E-value=0.024 Score=56.36 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=27.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
.++...+.|.||+|+|||||++.|+..+...+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 56677899999999999999999999874333
No 295
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.53 E-value=0.026 Score=53.76 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.++.-+-|.||+|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344568899999999999999999988754
No 296
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.48 E-value=0.037 Score=54.06 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=28.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEe
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 283 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l----~~~~i~v~ 283 (498)
..+..-++|.||||+|||++++.++... |.+++.++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4566789999999999999999998865 44565554
No 297
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.46 E-value=0.047 Score=55.42 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhccccCch---hhccCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 224 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 224 ~~~k~~L~~~i~~~l~~~~---~~~~~~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.+++.+.+.+...+.... ...--..++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4555555555544332221 111013456778999999999999999999976
No 298
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.45 E-value=0.33 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=18.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.+++++.+|+|+|||..+-..+-.
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 367999999999999876554443
No 299
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.45 E-value=0.028 Score=53.54 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeEEEE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTFFNI 282 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~i~v 282 (498)
.+-|.||||+||||+++.+++.++.+.+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 467899999999999999999999876643
No 300
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.43 E-value=0.2 Score=52.02 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEeccccch-------h---------cc---c-CcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------K---------WR---G-DSEKLIKVLFELA 306 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l~~-------~---------~~---G-~~~~~l~~~f~~a 306 (498)
++..+++.|++|+||||++..+|..+ +..+..+++.-... . +. + .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 55678889999999999999999876 45555555421110 0 00 0 1122334556666
Q ss_pred HhcCCeEEEEcCccch
Q 010888 307 RHHAPSTIFLDEIDAI 322 (498)
Q Consensus 307 ~~~~p~VL~IDEiD~l 322 (498)
+.....+++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5456689999865433
No 301
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.41 E-value=0.032 Score=50.83 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
...++||.|++|+|||++|.++..+ |..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 3579999999999999999999874 4433
No 302
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.31 E-value=0.022 Score=55.99 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEecccc
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 287 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~~s~l 287 (498)
.-|.|.||+|+||||+++.+++.++ ..+..+++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3588999999999999999999875 44555665444
No 303
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.09 E-value=0.14 Score=47.53 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCcHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKA 270 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAra 270 (498)
.+++++.+|+|+|||..+-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36899999999999986543
No 304
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.07 E-value=0.19 Score=47.24 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAK 269 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAr 269 (498)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 579999999999998643
No 305
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.98 E-value=0.1 Score=54.69 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~---~~~i~v~ 283 (498)
+..|++.|.||+|||++++.+++.++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45789999999999999999999874 4444444
No 306
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.88 E-value=0.0059 Score=63.85 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCccCCCcEEEEEE-eCCCCCCCHHHHh--cccceeEecCCCHH-HHHHHH
Q 010888 335 ASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAAMLR--RLEKRILVPLPDTE-ARRAMF 395 (498)
Q Consensus 335 ~~~~i~~~Ll~~ld~~~~~~~~viVIaa-Tn~p~~Ld~al~~--Rf~~~i~~~~Pd~~-eR~~IL 395 (498)
..+++++.|+..|+++..... + +++ ||+|+.||+++++ ||++.+++++|+.. .|.+|+
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 346778889999998855433 3 455 9999999999998 99999999999887 677765
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.86 E-value=0.023 Score=53.36 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=17.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHH-HHhC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVA-TECK 276 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia-~~l~ 276 (498)
.++.-+.|.||+|+||||+++.++ ....
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 344568899999999999999999 7653
No 308
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.81 E-value=0.035 Score=51.04 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 309
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.81 E-value=0.044 Score=59.20 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEeccc
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 286 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~s~ 286 (498)
.+..|+|.|+||+||||+|+++++.++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345688999999999999999999985 7788777543
No 310
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.78 E-value=0.13 Score=51.77 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
....|.|.|+||+|||+++..++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34578999999999999999998876 54444443
No 311
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.78 E-value=0.042 Score=54.64 Aligned_cols=28 Identities=18% Similarity=0.013 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3455668899999999999999999976
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.74 E-value=0.069 Score=48.28 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
.-+.|.|++|+|||+++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999876 45554444
No 313
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.67 E-value=0.18 Score=59.64 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++..+.|.||+|+||||+++.+...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4566779999999999999999999877
No 314
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.67 E-value=0.34 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.+|+|+|||..+-..+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 579999999999999877666544
No 315
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.66 E-value=0.044 Score=53.96 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+.-+.|.||+|+||||+++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999999875
No 316
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.61 E-value=0.24 Score=54.48 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCCCccccCcHHHHHHHHHHH-hccccCc-hhhccCCCCCceEEEEcCCCCcHHHHHHHHH-HH---hCCeEEEEec
Q 010888 214 DVKWESIKGLENAKRLLKEAV-VMPIKYP-KYFTGLLSPWKGILLFGPPGTGKTMLAKAVA-TE---CKTTFFNISA 284 (498)
Q Consensus 214 ~~~~~~IvG~~~~k~~L~~~i-~~~l~~~-~~~~~~~~~~~~vLL~GppGtGKT~lAraia-~~---l~~~~i~v~~ 284 (498)
+.+|+++.=.+.+++.+.+.- ..+...+ +.+........++++.||+|+|||+.+-... +. -+...+.+.+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 455666654444554444310 0111111 1122223446789999999999999984433 22 2455555543
No 317
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.55 E-value=0.056 Score=51.12 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.-+.|.|++|+||||+++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5688999999999999999999984
No 318
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.53 E-value=0.22 Score=55.01 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHHh---CCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAK-AVATEC---KTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAr-aia~~l---~~~~i~v~~ 284 (498)
..++++.||+|+|||+.+. .+.+.+ +...+.+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 5789999999999999883 333222 555555543
No 319
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.46 E-value=0.05 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
++..+.|.||+|+||||+++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 320
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.45 E-value=0.049 Score=53.89 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+.-+.|.||+|+||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 321
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.44 E-value=0.28 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...++|.||.|+||||+.|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456889999999999999999864
No 322
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.39 E-value=0.038 Score=52.58 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566778999999999999999999765
No 323
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.38 E-value=0.21 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+...+.|.||||+||||+.+.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 445678899999999999999999765
No 324
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.32 E-value=0.24 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
+++++.+|+|+|||+.+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5799999999999987654443
No 325
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.31 E-value=0.074 Score=57.94 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++|+||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999888776654
No 326
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.30 E-value=0.24 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVA 272 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia 272 (498)
++++++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998765443
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.28 E-value=0.11 Score=51.97 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+.-+.|.||+|+||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334678999999999999999999875
No 328
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.28 E-value=0.34 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVA 272 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia 272 (498)
+..++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4678999999999999999994
No 329
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.27 E-value=0.04 Score=52.44 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566779999999999999999999865
No 330
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.27 E-value=0.027 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
.+.-|.|.|++|+||||+++.+++.++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345688999999999999999999983
No 331
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.26 E-value=0.043 Score=57.60 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++|+||+|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 568999999999999999987754
No 332
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.17 E-value=0.052 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 253 GILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~ 276 (498)
-.+|+||.|+|||+++++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999998775
No 333
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.12 E-value=0.098 Score=48.95 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 282 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v 282 (498)
+.-+.|.|++|+||||+++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3467889999999999999999988 4555443
No 334
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.97 E-value=0.18 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=17.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
+++++.+|+|+|||..+-..+..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~ 59 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALW 59 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 57999999999999955444333
No 335
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.96 E-value=0.17 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.3
Q ss_pred ceEEEEcCCCCcHHHHH-HHHH
Q 010888 252 KGILLFGPPGTGKTMLA-KAVA 272 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lA-raia 272 (498)
+.+|+.||+|+|||..+ -.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999986 4444
No 336
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.93 E-value=0.038 Score=52.13 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678899999999999999999765
No 337
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.92 E-value=0.048 Score=52.05 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999865
No 338
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.12 Score=46.40 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.....+++.|++|+|||+++..+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344589999999999999999998754
No 339
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.90 E-value=0.17 Score=51.25 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=31.0
Q ss_pred CCCccccCcHHHHHHHHHHHhc-cccCchhhccCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 215 VKWESIKGLENAKRLLKEAVVM-PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~-~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.+|+++.=.+.+.+.+.+.-.. +..++...-......+++++.+|+|+|||..+-..+-
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHH
Confidence 4566665455566666542111 1111111000112236799999999999977654433
No 340
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.82 E-value=0.075 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998875
No 341
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.73 E-value=0.053 Score=52.47 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++.-+.|.||+|+|||||.+.++....
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45566788999999999999999998653
No 342
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.70 E-value=0.35 Score=45.91 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
.-.+++||.|+|||+.+-..+.+. |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456789999999997666555544 55555554
No 343
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.68 E-value=0.061 Score=51.33 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+ ..+.|.||+|+|||||.+.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 678899999999999999999865
No 344
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.68 E-value=0.076 Score=49.76 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEe
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~~~i~v~ 283 (498)
-.|-|+|..||||||+++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4688999999999999999988 898887544
No 345
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.63 E-value=0.049 Score=50.85 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+.|.||+|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 346
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.63 E-value=0.056 Score=52.23 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566789999999999999999998765
No 347
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.62 E-value=0.066 Score=51.95 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++.-+.|.||+|+|||||.+.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456667899999999999999999985
No 348
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.52 E-value=0.064 Score=57.03 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
..++|.|.+|+||||+++++|++++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999974
No 349
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.50 E-value=0.059 Score=52.41 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||++.|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999865
No 350
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.49 E-value=0.06 Score=51.63 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++..+.|.||+|+|||||.+.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567889999999999999999985
No 351
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.40 E-value=0.25 Score=52.90 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEecccc
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 287 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~s~l 287 (498)
+..++|.|++|+||||+++.+++.+ |.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3568899999999999999999987 456666665443
No 352
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.40 E-value=0.053 Score=51.30 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||.|+|||||.+.++...
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678999999999999999999865
No 353
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.39 E-value=0.053 Score=52.24 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.38 E-value=0.067 Score=54.30 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4555678899999999999999999865
No 355
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.37 E-value=0.054 Score=51.93 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3555678999999999999999998865
No 356
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.36 E-value=0.063 Score=52.04 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.++...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4556678899999999999999999866
No 357
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.35 E-value=0.13 Score=48.21 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
+.-+.|.|++|+||||+++.+++.++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 45688999999999999999999998643
No 358
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.35 E-value=0.051 Score=51.03 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.++...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678899999999999999999865
No 359
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.32 E-value=0.054 Score=54.91 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=43.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CeEEEEec-cccchh-------ccc-C-------cHHHHHHHHHHHHhcC
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISA-SSVVSK-------WRG-D-------SEKLIKVLFELARHHA 310 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~--~~~i~v~~-s~l~~~-------~~G-~-------~~~~l~~~f~~a~~~~ 310 (498)
.+...++|.||+|+||||++++++.... ...+.+.. .++... +.- . .....+..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 3456899999999999999999998763 23344432 111100 110 0 1112344555566667
Q ss_pred CeEEEEcCcc
Q 010888 311 PSTIFLDEID 320 (498)
Q Consensus 311 p~VL~IDEiD 320 (498)
|..++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 8889999874
No 360
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.28 E-value=0.076 Score=57.70 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.++++|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999988887654
No 361
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.28 E-value=0.094 Score=48.15 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+++.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998854
No 362
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.27 E-value=0.057 Score=51.49 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
No 363
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.26 E-value=0.066 Score=51.87 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566678899999999999999998855
No 364
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.26 E-value=0.086 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.-+.|.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999987
No 365
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.24 E-value=0.067 Score=51.62 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||.|+|||||.+.++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678999999999999999999865
No 366
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.23 E-value=0.088 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 367
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.21 E-value=0.38 Score=48.13 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.....+.|.|+||+||||++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344678899999999999999998765
No 368
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.19 E-value=0.38 Score=49.30 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..++|.||+|+|||+|++.|++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3445689999999999999999998865
No 369
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.15 E-value=0.13 Score=57.75 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
...+|.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999888877654
No 370
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.14 E-value=0.058 Score=52.64 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||++.++...
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455678999999999999999999865
No 371
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.13 E-value=0.081 Score=53.49 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
...+.|.||+|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999987654
No 372
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.08 E-value=0.05 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+.|.|++|+||||+++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 373
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.08 E-value=0.082 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
++.|.||+|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 374
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.07 E-value=0.061 Score=51.67 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..++..+.|.||+|+|||||.+.++....
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34556789999999999999999998653
No 375
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.04 E-value=0.092 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999985
No 376
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.04 E-value=0.061 Score=52.17 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||++.++...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555678899999999999999999855
No 377
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.03 E-value=0.083 Score=53.60 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+.|.||+|+|||||.+.|+.-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4555678899999999999999999865
No 378
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.02 E-value=0.083 Score=53.68 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3555678899999999999999999865
No 379
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.02 E-value=0.23 Score=58.88 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++..+-|.||+|+||||+++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4566778999999999999999998855
No 380
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.00 E-value=0.87 Score=40.52 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999864
No 381
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.00 E-value=0.057 Score=57.99 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC----CeEEEEecccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 287 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~----~~~i~v~~s~l 287 (498)
.++..+.|.|++|+||||++++++..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3456789999999999999999999884 34545655443
No 382
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.99 E-value=0.087 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=19.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
+.-+.|.|++|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999987
No 383
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.96 E-value=0.082 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999999854
No 384
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.94 E-value=0.049 Score=56.78 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=20.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
...+-.++.|+||||||+++..++.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3345678999999999999988875
No 385
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.94 E-value=0.55 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.+|+|+|||..+-..+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 579999999999999877666544
No 386
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.93 E-value=0.086 Score=53.92 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3555678899999999999999999865
No 387
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.91 E-value=0.086 Score=53.74 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4555678899999999999999999855
No 388
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.84 E-value=0.077 Score=53.76 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999865
No 389
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.77 E-value=0.068 Score=51.43 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
No 390
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.75 E-value=0.069 Score=52.21 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||+|+|||||.+.++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999866
No 391
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.72 E-value=0.12 Score=48.72 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATECKT 277 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l~~ 277 (498)
+.-+.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456788899999999999999997744
No 392
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.72 E-value=0.11 Score=45.02 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 393
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=91.70 E-value=0.25 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=16.8
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAV 271 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lArai 271 (498)
.+.+++.+|+|+|||+.+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 356999999999999875433
No 394
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.60 E-value=0.11 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999874
No 395
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.57 E-value=0.12 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 396
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=91.54 E-value=0.62 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
+++++.+|+|+|||+.+-..+.+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 57999999999999988776653
No 397
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.54 E-value=0.073 Score=53.78 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4555678899999999999999999865
No 398
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.53 E-value=0.11 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+++.|++|+|||+++..+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
No 399
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.50 E-value=0.087 Score=53.71 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3455678899999999999999999865
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.49 E-value=0.18 Score=50.07 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-++|.|+.|+||||+.+.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
No 401
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.43 E-value=0.26 Score=47.34 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 402
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.34 E-value=0.36 Score=50.16 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=29.6
Q ss_pred CCCccccCcHHHHHHHHHHHhccccCchh-----hccC-CCCCceEEEEcCCCCcHHHHH
Q 010888 215 VKWESIKGLENAKRLLKEAVVMPIKYPKY-----FTGL-LSPWKGILLFGPPGTGKTMLA 268 (498)
Q Consensus 215 ~~~~~IvG~~~~k~~L~~~i~~~l~~~~~-----~~~~-~~~~~~vLL~GppGtGKT~lA 268 (498)
.+|+++.=.+...+.|.+. . ...+.. +... ...++.+++.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~-g--~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM-G--FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT-T--CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc-C--CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 3577766566666666541 1 111111 1111 123478999999999999874
No 403
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.34 E-value=0.13 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998643
No 404
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.28 E-value=0.18 Score=51.25 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34689999999999999999998765 556666654
No 405
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.26 E-value=0.1 Score=53.49 Aligned_cols=28 Identities=32% Similarity=0.454 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+||||+.+.|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4566779999999999999999999743
No 406
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.24 E-value=0.69 Score=47.61 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CceEEEEcCCCCcHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLA 268 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lA 268 (498)
.+.+++.+|+|+|||...
T Consensus 93 g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCchHHH
Confidence 478999999999999843
No 407
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.20 E-value=0.15 Score=44.26 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
....|++.|++|+|||+|+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999763
No 408
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.16 E-value=0.16 Score=44.53 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
.....|++.|++|+|||+|+..+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3446799999999999999999976
No 409
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.16 E-value=0.13 Score=44.54 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
-.|++.|++|+|||++++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 410
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.12 E-value=0.13 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...|++.|++|+|||+|+..+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999997743
No 411
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.10 E-value=0.098 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 412
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.08 E-value=0.12 Score=45.32 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+.|.|++|+|||+|.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 413
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.08 E-value=0.14 Score=44.98 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 414
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.07 E-value=0.098 Score=51.43 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++..+.|.||.|+|||||.+.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566778999999999999999999865
No 415
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.00 E-value=0.19 Score=56.48 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.||||||||+++..+...
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999987776553
No 416
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.99 E-value=1.4 Score=49.30 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
+.++|+.||+|+|||..+-..+-.. +...+.+.+
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3589999999999999886655443 655655554
No 417
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.98 E-value=0.14 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 418
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.92 E-value=0.14 Score=44.76 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 47999999999999999999753
No 419
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.91 E-value=0.14 Score=44.49 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 420
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.89 E-value=0.18 Score=50.12 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
...+++|.|++|+|||++|.++..+ |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 4578999999999999999999875 44443
No 421
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.89 E-value=0.11 Score=50.34 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.. ...+.|.||+|+|||||.+.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 5678999999999999999999865
No 422
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.85 E-value=0.076 Score=53.76 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+..-+.|.||+|+|||||.+.|+.-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4555678899999999999999999855
No 423
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.81 E-value=0.15 Score=47.65 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-|.|.|++|+||||.++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999987
No 424
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.80 E-value=0.15 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 425
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.75 E-value=0.16 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 426
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.69 E-value=0.15 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999873
No 427
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.68 E-value=0.14 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...+.|.|+||+|||+|.+.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999864
No 428
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.64 E-value=0.17 Score=43.70 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l 275 (498)
.+++.|++|+|||+|+..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997643
No 429
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.61 E-value=0.16 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 010888 252 KGILLFGPPGTGKTMLAKAVATECK 276 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l~ 276 (498)
..+++.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998763
No 430
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.61 E-value=0.17 Score=44.38 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
.-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998755
No 431
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=90.56 E-value=0.71 Score=48.65 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=18.5
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAK-AVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAr-aia~~ 274 (498)
.+++++.+|+|+|||..+- .+...
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHHH
Confidence 4789999999999998744 34444
No 432
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.56 E-value=0.089 Score=52.17 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+...+.|.||+|+|||||++.++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 5667789999999999999999998865
No 433
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.54 E-value=0.15 Score=44.12 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
..|++.|++|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 434
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.50 E-value=0.19 Score=47.18 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHh--CCeEEEEe
Q 010888 252 KGILLFGPPGTGKTM-LAKAVATEC--KTTFFNIS 283 (498)
Q Consensus 252 ~~vLL~GppGtGKT~-lAraia~~l--~~~~i~v~ 283 (498)
.-.+++||-|+|||+ +.+.+.+.. +...+.++
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 346789999999999 556654332 55554443
No 435
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.47 E-value=0.16 Score=44.14 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~ 273 (498)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999863
No 436
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.43 E-value=0.15 Score=45.28 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..++|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999873
No 437
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.40 E-value=0.15 Score=53.54 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
.++.-+.|.||+|+|||||+|.++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345679999999999999999999865
No 438
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.38 E-value=0.17 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..+++.|++|+|||+|++.+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998743
No 439
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.27 E-value=0.11 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.++.-+.|.|+.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44456889999999999999999987
No 440
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.27 E-value=0.17 Score=44.58 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57999999999999999999874
No 441
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.26 E-value=0.48 Score=44.93 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
+...|+|.|.||+|||+++.++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999763
No 442
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.25 E-value=0.17 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 443
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.23 E-value=0.2 Score=44.63 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
No 444
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=90.19 E-value=3.2 Score=45.39 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCeEEEEec
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 284 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l~~~~i~v~~ 284 (498)
....+.+++.||+|+|||+.+-....+-+...+.+.+
T Consensus 229 L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 229 PQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp CSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred HHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 4445789999999999997666555444545555544
No 445
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.17 E-value=0.18 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
-.|++.|++|+|||+|+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
No 446
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.15 E-value=0.17 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999875
No 447
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=90.12 E-value=0.014 Score=46.76 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhhhhhhhhhcccc---CCCc--eeeeecCCCcccceeeEEEecccchhhhhhh
Q 010888 15 RALTKCLKEGIITSRFIISKFII---GPPH--AFFYSFGSPPFQFSLAIQLAGCCSVETERER 72 (498)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (498)
..+..||+.+|.+.+-+|.-|+. |.++ +-+|..|+.+...|++|.++|-+. +-|+++
T Consensus 7 ~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~-~we~Ar 68 (89)
T 3eab_A 7 ERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGE-QCERAR 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCCh-hHHHHH
Confidence 35678999999999999999999 9898 668999999999999999999443 444444
No 448
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.11 E-value=0.16 Score=51.52 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~~l 275 (498)
..++.-+-|.||+|+|||||++.++.-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4556678899999999999999999855
No 449
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.08 E-value=0.2 Score=46.22 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...++|.|++|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 450
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.06 E-value=0.17 Score=44.43 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999999753
No 451
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.06 E-value=0.17 Score=43.73 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
-.+++.|++|+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999999854
No 452
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.05 E-value=0.19 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 453
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.03 E-value=0.11 Score=47.37 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=21.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH
Q 010888 248 LSPWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 248 ~~~~~~vLL~GppGtGKT~lAraia~ 273 (498)
..+...+.|.|++|+|||+|.+.++.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34456799999999999999998864
No 454
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.02 E-value=0.19 Score=45.01 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+...-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998743
No 455
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.99 E-value=0.25 Score=51.36 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
.++..+.|.||+|+|||||++.|+......
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 345678999999999999999999988543
No 456
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.97 E-value=0.19 Score=44.14 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 457
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.90 E-value=0.18 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 458
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.89 E-value=0.39 Score=48.82 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 010888 253 GILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 284 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l----~~~~i~v~~ 284 (498)
++++.+|+|+|||..+-.++... +.+.+.+.+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999998887665 555555544
No 459
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.88 E-value=0.19 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999888754
No 460
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.87 E-value=0.18 Score=44.23 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~ 273 (498)
..|++.|++|+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999865
No 461
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.86 E-value=0.2 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999875
No 462
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.82 E-value=0.19 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...+++.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
No 463
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.80 E-value=0.38 Score=45.45 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh--CCeEEEEe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 283 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l--~~~~i~v~ 283 (498)
....+++.|.+|+||||++..++..+ +.....++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568889999999999999999776 55555555
No 464
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=89.77 E-value=0.37 Score=55.99 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..+|+.||+|+|||+++-..+... +...+.+.+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 689999999999999876555443 555555544
No 465
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.76 E-value=0.14 Score=50.76 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCeEE
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKTTFF 280 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~~~i 280 (498)
-...+|||.|++|+|||++|-.+.. -|..++
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 3457899999999999999988765 355444
No 466
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.74 E-value=0.19 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|++.+...-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998643
No 467
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.72 E-value=0.21 Score=43.85 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...|++.|++|+|||+|+..+...-
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3579999999999999999998643
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.68 E-value=0.29 Score=49.30 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCe
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATECKTT 278 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~l~~~ 278 (498)
++..+.|.||+|+|||||.+.|+......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44678999999999999999999988543
No 469
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.65 E-value=0.21 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 470
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.65 E-value=0.33 Score=44.64 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 010888 254 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 283 (498)
Q Consensus 254 vLL~GppGtGKT~lAraia~~l---~~~~i~v~ 283 (498)
|.|-|+.|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5678999999999999999987 66666553
No 471
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.64 E-value=0.2 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||++++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999873
No 472
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=89.60 E-value=0.45 Score=52.31 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHH-HHHh--CCeEEEEe
Q 010888 251 WKGILLFGPPGTGKTMLAKAV-ATEC--KTTFFNIS 283 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lArai-a~~l--~~~~i~v~ 283 (498)
..++++.||+|+|||+.+-.. .+.+ +...+.+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 468999999999999988433 3332 44444443
No 473
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.50 E-value=0.25 Score=43.47 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..+++.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 474
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.38 E-value=0.25 Score=44.50 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999874
No 475
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.36 E-value=0.23 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 476
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.34 E-value=0.19 Score=44.50 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 010888 253 GILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~ 274 (498)
.|++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999764
No 477
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.34 E-value=0.53 Score=45.04 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
+.|.|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999764
No 478
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.33 E-value=0.2 Score=44.56 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999765
No 479
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=89.27 E-value=1.2 Score=49.54 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCeEEEEec
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA 284 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l--------~~~~i~v~~ 284 (498)
+++++.+|+|+|||..+-..+... +.+.+.+.+
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 579999999999999877766544 455555544
No 480
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.25 E-value=0.24 Score=44.64 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 481
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.23 E-value=0.36 Score=44.84 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-eEEEEeccc
Q 010888 249 SPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASS 286 (498)
Q Consensus 249 ~~~~~vLL~GppGtGKT~lAraia~~l~~-~~i~v~~s~ 286 (498)
.|..-++|+|.||+||+++|+.+.+.++. .+..++.++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 45677899999999999999999887753 234445444
No 482
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.23 E-value=0.24 Score=44.26 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|++.+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999998743
No 483
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.19 E-value=0.23 Score=44.89 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l 275 (498)
...|++.|++|+|||+|+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998753
No 484
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.19 E-value=0.23 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~~ 274 (498)
+...+++.|++|+|||+|+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999753
No 485
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=89.17 E-value=0.21 Score=47.71 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=23.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCeE
Q 010888 253 GILLFGPPGTGKTMLAKAVATECKTTF 279 (498)
Q Consensus 253 ~vLL~GppGtGKT~lAraia~~l~~~~ 279 (498)
-+.|+|++|||||++++.+...+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367999999999999999999888665
No 486
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.15 E-value=0.36 Score=44.69 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCeEEEE
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNI 282 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l--~~~~i~v 282 (498)
+=|.|-|+.|+||||.++.+++.+ +.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 347788999999999999999988 4455443
No 487
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=89.12 E-value=1.1 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
+++++.+|+|+|||..+..++.+.
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~~ 46 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKDH 46 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHH
Confidence 579999999999999988877653
No 488
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.06 E-value=0.31 Score=50.25 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 284 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~l---~~~~i~v~~ 284 (498)
..++++.|++|+|||++++.+...+ +.+++.++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4789999999999999998877654 677777765
No 489
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.06 E-value=0.17 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAKAVAT 273 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAraia~ 273 (498)
....|++.|++|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999988863
No 490
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.97 E-value=0.25 Score=43.93 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
..|++.|++|+|||+|+..+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998743
No 491
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.97 E-value=0.25 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 010888 252 KGILLFGPPGTGKTMLAKAVATEC 275 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~l 275 (498)
-.|++.|++|+|||+|+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998755
No 492
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.96 E-value=0.25 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
-.|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888764
No 493
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.93 E-value=0.27 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357999999999999999999873
No 494
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.92 E-value=0.25 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46999999999999999998864
No 495
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.86 E-value=0.26 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999763
No 496
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=88.85 E-value=0.24 Score=43.60 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999853
No 497
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.85 E-value=0.24 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 498
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.85 E-value=0.27 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 010888 251 WKGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 251 ~~~vLL~GppGtGKT~lAraia~~ 274 (498)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 499
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.84 E-value=0.26 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 010888 252 KGILLFGPPGTGKTMLAKAVATE 274 (498)
Q Consensus 252 ~~vLL~GppGtGKT~lAraia~~ 274 (498)
..|++.|++|+|||+|+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 500
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=88.83 E-value=1.3 Score=46.89 Aligned_cols=20 Identities=25% Similarity=0.234 Sum_probs=16.6
Q ss_pred CCceEEEEcCCCCcHHHHHH
Q 010888 250 PWKGILLFGPPGTGKTMLAK 269 (498)
Q Consensus 250 ~~~~vLL~GppGtGKT~lAr 269 (498)
..+.+++.+|+|+|||..+-
T Consensus 110 ~~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHH
Confidence 35789999999999998533
Done!