BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010889
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 23/220 (10%)
Query: 129 MTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMI 188
M L + A++ + IP +I ++L + V+ + I+ +M V + M
Sbjct: 69 MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDV--EEAMA 126
Query: 189 KPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIF---- 244
Y+ PA LL AL+ G TK +G L N+ L+ IF++
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186
Query: 245 LFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLL---------PPSSKDLKFGQFLKNG 295
G G +A I +++ L+LL+ ++ L P K+L + + G
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELI--RLFRLG 244
Query: 296 FLLMVRVIAVTFCVTL---AASLAARQGSTSMAAFQVCLQ 332
F + A+ F VTL A L A GST +AA QV L
Sbjct: 245 FPVAA---ALFFEVTLFAVVALLVAPLGSTVVAAHQVALN 281
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 271 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 330
KLI E+ +LPPS + QFL NG+L M + + + + G + AF
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279
Query: 331 LQI 333
Q+
Sbjct: 280 FQV 282
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 271 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 330
KLI E+ +LPPS + QFL NG+L M + + + + G + AF
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279
Query: 331 LQI 333
Q+
Sbjct: 280 FQV 282
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 271 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 330
KLI E+ +LPPS + QFL NG+L M + + + + G + AF
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279
Query: 331 LQI 333
Q+
Sbjct: 280 FQV 282
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 271 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 330
KLI E+ +LPPS + QFL NG+L M + + + + G + AF
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279
Query: 331 LQI 333
Q+
Sbjct: 280 FQV 282
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 271 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 330
KLI E+ +LPPS + QFL NG+L M + + + + G + AF
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279
Query: 331 LQI 333
Q+
Sbjct: 280 FQV 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,901,921
Number of Sequences: 62578
Number of extensions: 350782
Number of successful extensions: 830
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 11
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)