Query 010889
Match_columns 498
No_of_seqs 202 out of 1926
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:43:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.9E-53 6.3E-58 432.5 48.6 426 19-495 12-447 (455)
2 PRK10189 MATE family multidrug 100.0 2.9E-48 6.4E-53 399.3 49.8 426 21-495 26-466 (478)
3 PRK09575 vmrA multidrug efflux 100.0 7.5E-48 1.6E-52 395.4 47.7 424 16-488 4-435 (453)
4 PRK00187 multidrug efflux prot 100.0 5.8E-48 1.3E-52 396.9 46.8 428 18-495 4-450 (464)
5 PRK10367 DNA-damage-inducible 100.0 1.6E-46 3.5E-51 382.8 48.7 416 21-489 6-431 (441)
6 PRK01766 multidrug efflux prot 100.0 8.5E-46 1.8E-50 381.7 47.2 422 18-488 6-441 (456)
7 TIGR01695 mviN integral membra 100.0 1.4E-36 3.1E-41 317.4 48.3 414 26-490 2-429 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 5.9E-35 1.3E-39 304.2 46.1 408 27-490 2-435 (488)
9 PRK15099 O-antigen translocase 100.0 5.8E-33 1.3E-37 282.8 44.8 401 26-487 3-410 (416)
10 TIGR00797 matE putative efflux 100.0 1.5E-33 3.3E-38 279.9 37.2 334 32-414 1-341 (342)
11 PF03023 MVIN: MviN-like prote 100.0 1.2E-29 2.6E-34 259.2 44.4 372 115-491 22-405 (451)
12 COG0728 MviN Uncharacterized m 100.0 3.5E-28 7.6E-33 244.3 48.6 423 24-491 7-439 (518)
13 PRK10459 colanic acid exporter 100.0 1.8E-27 4E-32 247.9 43.8 399 22-488 3-404 (492)
14 KOG1347 Uncharacterized membra 100.0 3.6E-29 7.8E-34 253.5 24.5 425 20-495 24-456 (473)
15 COG2244 RfbX Membrane protein 99.9 5.2E-24 1.1E-28 221.4 41.1 388 21-473 3-396 (480)
16 PRK10189 MATE family multidrug 99.9 8.9E-21 1.9E-25 195.6 29.5 205 283-487 23-235 (478)
17 COG0534 NorM Na+-driven multid 99.9 8.8E-21 1.9E-25 193.9 27.1 207 284-490 12-222 (455)
18 PRK00187 multidrug efflux prot 99.9 1.5E-20 3.2E-25 193.7 27.1 203 284-487 5-213 (464)
19 PRK10367 DNA-damage-inducible 99.9 2.3E-20 4.9E-25 190.7 27.4 202 286-487 6-210 (441)
20 PRK09575 vmrA multidrug efflux 99.9 4E-20 8.7E-25 190.1 27.1 205 285-489 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 6.9E-20 1.5E-24 189.0 27.1 204 285-488 8-217 (456)
22 TIGR00797 matE putative efflux 99.8 5.3E-17 1.1E-21 161.2 26.3 192 297-488 1-196 (342)
23 PF01943 Polysacc_synt: Polysa 99.7 5.2E-15 1.1E-19 141.6 29.5 269 27-355 2-272 (273)
24 TIGR01695 mviN integral membra 99.7 2.5E-15 5.3E-20 157.3 29.5 234 19-303 218-453 (502)
25 PF01554 MatE: MatE; InterPro 99.7 3.7E-18 8E-23 150.3 5.4 161 297-457 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 3.9E-14 8.5E-19 145.1 27.1 211 19-277 193-405 (451)
27 PRK10459 colanic acid exporter 99.6 4.7E-13 1E-17 139.7 31.4 203 19-275 202-405 (492)
28 PF01554 MatE: MatE; InterPro 99.6 1.2E-15 2.6E-20 134.3 9.9 161 32-241 1-162 (162)
29 TIGR02900 spore_V_B stage V sp 99.6 6.9E-14 1.5E-18 145.8 24.9 204 20-276 221-435 (488)
30 COG0728 MviN Uncharacterized m 99.6 2.8E-12 6.1E-17 129.9 31.2 240 19-308 227-468 (518)
31 PRK15099 O-antigen translocase 99.5 6.1E-13 1.3E-17 135.7 20.3 203 18-275 209-412 (416)
32 PF13440 Polysacc_synt_3: Poly 99.5 1.4E-11 3.1E-16 116.4 27.3 245 43-354 3-250 (251)
33 COG2244 RfbX Membrane protein 99.5 1.6E-11 3.4E-16 127.8 24.6 187 20-260 209-396 (480)
34 KOG2864 Nuclear division RFT1 99.3 1.8E-08 3.8E-13 97.7 31.8 415 20-488 4-448 (530)
35 KOG1347 Uncharacterized membra 99.2 1.3E-09 2.8E-14 111.3 18.4 201 286-487 25-228 (473)
36 PF04506 Rft-1: Rft protein; 99.1 8.4E-08 1.8E-12 99.5 26.2 202 289-490 253-471 (549)
37 PF14667 Polysacc_synt_C: Poly 98.6 8.5E-06 1.8E-10 70.0 18.2 82 195-278 2-83 (146)
38 PF07260 ANKH: Progressive ank 98.5 0.00018 3.9E-09 67.5 26.1 266 17-337 4-289 (345)
39 PF14667 Polysacc_synt_C: Poly 98.5 1.2E-06 2.5E-11 75.4 9.7 82 410-491 1-82 (146)
40 PF01943 Polysacc_synt: Polysa 98.4 0.00018 3.9E-09 68.4 24.6 186 292-488 2-190 (273)
41 PF04506 Rft-1: Rft protein; 98.2 4.7E-05 1E-09 79.2 17.4 215 22-278 251-473 (549)
42 PF13440 Polysacc_synt_3: Poly 98.2 0.00065 1.4E-08 63.8 23.8 167 309-489 4-173 (251)
43 KOG2864 Nuclear division RFT1 98.1 0.00095 2.1E-08 65.6 21.7 210 22-278 237-452 (530)
44 PF07260 ANKH: Progressive ank 97.6 0.05 1.1E-06 51.5 22.6 164 285-458 7-179 (345)
45 COG4267 Predicted membrane pro 97.4 0.16 3.5E-06 49.2 30.5 272 198-479 137-436 (467)
46 PF14936 p53-inducible11: Tumo 87.8 9.6 0.00021 32.7 10.4 64 118-182 16-85 (179)
47 COG4267 Predicted membrane pro 68.4 1.3E+02 0.0028 29.9 20.6 129 341-483 77-205 (467)
48 PF04505 Dispanin: Interferon- 41.3 1.5E+02 0.0033 22.3 7.1 35 347-381 39-73 (82)
49 TIGR01478 STEVOR variant surfa 39.7 37 0.00079 32.0 3.7 33 464-496 260-293 (295)
50 PRK04288 antiholin-like protei 37.5 3.4E+02 0.0073 25.1 14.3 43 22-64 85-128 (232)
51 PTZ00370 STEVOR; Provisional 36.9 35 0.00077 32.2 3.2 32 464-495 256-288 (296)
52 PF05975 EcsB: Bacterial ABC t 29.8 5.8E+02 0.013 25.5 14.5 36 360-395 89-124 (386)
53 TIGR00659 conserved hypothetic 27.2 5E+02 0.011 23.9 14.4 39 21-59 78-117 (226)
54 COG0679 Predicted permeases [G 26.7 5.9E+02 0.013 24.6 25.1 76 313-395 114-189 (311)
55 PF11683 DUF3278: Protein of u 26.4 3.7E+02 0.008 22.2 14.6 50 280-329 18-67 (129)
56 PF05975 EcsB: Bacterial ABC t 26.2 6.7E+02 0.015 25.1 15.1 36 139-177 89-124 (386)
57 KOG2468 Dolichol kinase [Lipid 24.5 4.9E+02 0.011 26.6 8.7 71 295-374 379-451 (510)
58 PF01102 Glycophorin_A: Glycop 24.4 1.3E+02 0.0029 24.6 4.1 12 267-278 83-94 (122)
59 PRK10711 hypothetical protein; 22.5 6.2E+02 0.013 23.4 14.3 38 22-59 80-118 (231)
60 PF13347 MFS_2: MFS/sugar tran 22.0 8.1E+02 0.018 24.6 15.3 31 293-323 141-171 (428)
61 PRK03612 spermidine synthase; 20.9 9.9E+02 0.021 25.1 23.6 47 441-487 152-198 (521)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.9e-53 Score=432.51 Aligned_cols=426 Identities=28% Similarity=0.461 Sum_probs=394.8
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 19 KDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
.++..|+++++++|++++++.+.+++.+|++++||++++++++++++.++...+..+.
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~---------------------- 69 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIF---------------------- 69 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 4568999999999999999999999999999999999999999999988876543222
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
.|.+.|++..++|++|+||+++.++ ...++++++.+++++..++.+.+.++++.+
T Consensus 70 ----------------------~gl~~g~~~liaq~~Ga~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 124 (455)
T COG0534 70 ----------------------IGLGTGTTVLVAQAIGAGDRKKAKR---VLGQGLLLALLLGLLLAILLLFFAEPLLRL 124 (455)
T ss_pred ----------------------HHHHHhHHHHHHHHHcCCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445567889999999999999999 899999999999999999999999999999
Q ss_pred cccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh-hc-chhhhHHHH
Q 010889 179 MGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL-FN-WGVSGAAIA 256 (498)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~-~~-~gv~Gaa~a 256 (498)
++.++| +.+.+.+|+++..++.|+..++..+.+.+|+.||+|.+++.++++.++|+++|++++++ ++ +|+.|+++|
T Consensus 125 l~~~~~--v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~A 202 (455)
T COG0534 125 LGAPAE--VLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALA 202 (455)
T ss_pred cCCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHH
Confidence 987666 89999999999999999999999999999999999999999999999999999999998 57 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc---cC---CCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Q 010889 257 HVISQYLISLILLWKLIEEVD---LL---PPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 330 (498)
Q Consensus 257 ~~is~~i~~l~~~~~~~~~~~---~~---~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia 330 (498)
|++++++..++..++++++++ .. ..+.+...+||+++.|.|..+++......+...+.+++++|++.+|+|+++
T Consensus 203 T~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~ 282 (455)
T COG0534 203 TVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIA 282 (455)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999999999999999887763 11 123444567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhh
Q 010889 331 LQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVG 410 (498)
Q Consensus 331 ~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 410 (498)
.++.++.++++.+++++..|++++++|++|+|++|+..+.+..++...+...+..++++++++.++|++|+|+.+.+..+
T Consensus 283 ~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~ 362 (455)
T COG0534 283 LRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVIL 362 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHH-HHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010889 411 IPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVS-VAVVSILCLFILSSS-HGYVGIWVALSMYMSLRAIAGFLRIGS 488 (498)
Q Consensus 411 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~i~i~l~~~l~~~-~G~~G~~ia~~~~~~i~~~~~~~~~~~ 488 (498)
+++.++..++++.+.+..+.+|+.||+|.++...+. .+++.+|+.+++.+. +|..|+|++...++.+..+...+++++
T Consensus 363 l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~ 442 (455)
T COG0534 363 LLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRR 442 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996655 689999999999988 999999999999999999999999984
Q ss_pred CCCCCCc
Q 010889 489 GSGPWSF 495 (498)
Q Consensus 489 ~~~~w~~ 495 (498)
++|++
T Consensus 443 --~~~~~ 447 (455)
T COG0534 443 --GRWRR 447 (455)
T ss_pred --hhhhh
Confidence 44543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.9e-48 Score=399.29 Aligned_cols=426 Identities=20% Similarity=0.272 Sum_probs=381.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhh
Q 010889 21 EIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVE 100 (498)
Q Consensus 21 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (498)
+..|++++.++|.+++++.+.+.+.+|+.++|++|++++|+++++.++......+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~------------------------- 80 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAF------------------------- 80 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 5678999999999999999999999999999999999999999998775432211
Q ss_pred hhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcc
Q 010889 101 AHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMG 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 180 (498)
..|++.+++.++||++|++|+|+.++ ...+++.++..++++.+++.+.+.+++..++.
T Consensus 81 -------------------~~gl~~g~~~lvsq~~Ga~~~~~~~~---~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~ 138 (478)
T PRK10189 81 -------------------FAAIDLGTTVVVAFSLGKRDRRRARA---AARQSLVIMTLFAVLLAVLIHFFGEQIIDLVA 138 (478)
T ss_pred -------------------HHHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 13455567889999999999999999 89999999999999999899999999999995
Q ss_pred cCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh----hcchhhhHHHH
Q 010889 181 VNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGAAIA 256 (498)
Q Consensus 181 ~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~----~~~gv~Gaa~a 256 (498)
.+.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.++..+++..++|++++++++++ +++|+.|+++|
T Consensus 139 ~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~A 218 (478)
T PRK10189 139 GDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLG 218 (478)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHH
Confidence 32344589999999999999999999999999999999999999999999999999999999976 48999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-cCCCC-------ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Q 010889 257 HVISQYLISLILLWKLIEEVD-LLPPS-------SKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQ 328 (498)
Q Consensus 257 ~~is~~i~~l~~~~~~~~~~~-~~~~~-------~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ 328 (498)
+.+++.+..++..+++.++.+ ..+.+ .+...+|++++.|+|..++.........+.+.+++++|++++|+|+
T Consensus 219 t~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~ 298 (478)
T PRK10189 219 LTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNF 298 (478)
T ss_pred HHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999998887666554311 11111 2234579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHH
Q 010889 329 VCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIG 408 (498)
Q Consensus 329 ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 408 (498)
++.++.++.+++..+++++..|++++++|++|+|++|+..+.+.+++++.+..+++++.++++++.++|++|+|+.+.+.
T Consensus 299 I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~ 378 (478)
T PRK10189 299 IAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVK 378 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHH-HHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHH
Q 010889 409 VGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSM-VSVAVVSILCLFILSS--SHGYVGIWVALSMYMSLRAIAGFLR 485 (498)
Q Consensus 409 ~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~i~i~l~~~l~~--~~G~~G~~ia~~~~~~i~~~~~~~~ 485 (498)
.++++.++..++++.+.+..+.+++.||++.+++.. ...+++.+|+.+++.. .+|+.|+|++..+++.+..++.+++
T Consensus 379 ~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r 458 (478)
T PRK10189 379 ILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWR 458 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 4568999999998864 6899999999999999999999888
Q ss_pred HHcCCCCCCc
Q 010889 486 IGSGSGPWSF 495 (498)
Q Consensus 486 ~~~~~~~w~~ 495 (498)
++ +++|++
T Consensus 459 ~~--~~~W~~ 466 (478)
T PRK10189 459 MV--SGRWLW 466 (478)
T ss_pred HH--cCcccc
Confidence 87 667776
No 3
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.5e-48 Score=395.45 Aligned_cols=424 Identities=18% Similarity=0.261 Sum_probs=381.8
Q ss_pred CcccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHH
Q 010889 16 IFRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTI 94 (498)
Q Consensus 16 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (498)
.+.+++..|++++.++|..++++.+.+++.+|+.++|| +|++++++++++.++.+....+.
T Consensus 4 ~~~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~------------------ 65 (453)
T PRK09575 4 IMMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIG------------------ 65 (453)
T ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34567889999999999999999999999999999999 59999999999877765432111
Q ss_pred hhhhhhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010889 95 KRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKP 174 (498)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (498)
.|.|.+.+.+++|++|++|+|+.++ ...+++.++..++++..++.+.++++
T Consensus 66 --------------------------~~~~~g~~~lvsq~~Ga~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (453)
T PRK09575 66 --------------------------LMVGMGTGSLLSIKRGEGDLEKAKR---ILTTGLLLLLLLGPIVSVILFLFADD 116 (453)
T ss_pred --------------------------HHHhccHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334456778999999999999999 89999999999999999999999999
Q ss_pred HHhhcccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHH
Q 010889 175 ILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAA 254 (498)
Q Consensus 175 i~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa 254 (498)
++++++.++| +.+.+.+|+++..++.|+..+.....+.+|+.||++.++..++...++|+++|+++++.+++|+.|++
T Consensus 117 il~l~~~~~~--~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa 194 (453)
T PRK09575 117 FLRAQGAEGR--TLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAA 194 (453)
T ss_pred HHHHcCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHH
Confidence 9999976555 88999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCC-----CccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHHH
Q 010889 255 IAHVISQYLISLILLWKLIEEVDLLPP-----SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGS-TSMAAFQ 328 (498)
Q Consensus 255 ~a~~is~~i~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~-~~va~~~ 328 (498)
+|+++++.+..++..++++++++..++ +.++..+|++++.|.|..++.....+...+.+.+++++|+ +++|+++
T Consensus 195 ~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~ 274 (453)
T PRK09575 195 IATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYA 274 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 999999999999887776654333222 2233346899999999999999999999999999999984 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-CHHHHHHH
Q 010889 329 VCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK-DLKVLQLI 407 (498)
Q Consensus 329 ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~ 407 (498)
++.++.++..++..+++++..|.+||++|+||+|++|+..+.++++++..+++.++++..+++++.++|++ |+|+.+.+
T Consensus 275 i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~ 354 (453)
T PRK09575 275 IVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAET 354 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 78999999
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 408 GVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 408 ~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
.+++++.+++.++++.+.+..+.+++.||++.++...+..+++++|+.+++.+.+|+.|+|+++.+++.+..++..++++
T Consensus 355 ~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~ 434 (453)
T PRK09575 355 IVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLW 434 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888899999999988799999999999999998887776665
Q ss_pred c
Q 010889 488 S 488 (498)
Q Consensus 488 ~ 488 (498)
+
T Consensus 435 ~ 435 (453)
T PRK09575 435 R 435 (453)
T ss_pred H
Confidence 4
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=5.8e-48 Score=396.90 Aligned_cols=428 Identities=19% Similarity=0.201 Sum_probs=377.3
Q ss_pred ccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhh
Q 010889 18 RKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRL 97 (498)
Q Consensus 18 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (498)
.+++..|++++.++|.+++++.+.+.+.+|+.+++|+|++++++++++.++.+....+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~---------------------- 61 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIF---------------------- 61 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3556789999999999999999999999999999999999999999998776542211
Q ss_pred hhhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 010889 98 TVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILN 177 (498)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 177 (498)
..|++.|.++++||++|++|+++.++ +..+++.+...++++..++.+ +.+++++
T Consensus 62 ----------------------~~gl~~~~~~i~aq~~Ga~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~il~ 115 (464)
T PRK00187 62 ----------------------CVGVIAAVGTLVAIRHGAGDIEGATR---LAQAGLWLAWLLALVAALLLW-NLKPLLL 115 (464)
T ss_pred ----------------------HHHHHHHHHHHHHHHhcCCChhhHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 12445567889999999999999999 899999999998888776655 6789999
Q ss_pred hcccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh----hcchhhhH
Q 010889 178 YMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGA 253 (498)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~----~~~gv~Ga 253 (498)
+++.++| +.+.+.+|+++..++.|+..+....++++|+.||++.+++.+++..++|+++|++++++ |++|+.|+
T Consensus 116 l~~~~~e--v~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Ga 193 (464)
T PRK00187 116 LFGQAPQ--NVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGI 193 (464)
T ss_pred HcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccch
Confidence 9976555 89999999999999999999999999999999999999999999999999999999976 36999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--CC-----CCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Q 010889 254 AIAHVISQYLISLILLWKLIEEVDL--LP-----PSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAA 326 (498)
Q Consensus 254 a~a~~is~~i~~l~~~~~~~~~~~~--~~-----~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~ 326 (498)
++|+.+++.+..+.+.++++++++. .+ .+.+...+|++++.++|.+++.........+++.+++++|++++++
T Consensus 194 alat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa 273 (464)
T PRK00187 194 GLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAA 273 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9999999988887776666543321 11 1223345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--CH---
Q 010889 327 FQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK--DL--- 401 (498)
Q Consensus 327 ~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~--- 401 (498)
++++.++.++...+..+++++..|+++|++|++|+|++|+..+++..+.+..+++.++++.++++++.++|++ |+
T Consensus 274 ~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~ 353 (464)
T PRK00187 274 HQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFA 353 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 44
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHH-HHHHHHHHHHHHh--ccchHHHHHHHHHHHHHH
Q 010889 402 KVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSV-AVVSILCLFILSS--SHGYVGIWVALSMYMSLR 478 (498)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~i~i~l~~~l~~--~~G~~G~~ia~~~~~~i~ 478 (498)
|+.+.+..++++.+++.++++.+.+..+++++.||+|.+++..+.. |++++|+.+++.. ++|+.|+|+++.+++.+.
T Consensus 354 ~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~ 433 (464)
T PRK00187 354 EIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACA 433 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999977665 6999999999875 589999999999999999
Q ss_pred HHHHHHHHHcCCCCCCc
Q 010889 479 AIAGFLRIGSGSGPWSF 495 (498)
Q Consensus 479 ~~~~~~~~~~~~~~w~~ 495 (498)
.+...++++.++.+|++
T Consensus 434 ~~~~~~~~~~~~~~~~~ 450 (464)
T PRK00187 434 AVALTLAFEWKTARLLR 450 (464)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 98887777655555554
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=382.82 Aligned_cols=416 Identities=22% Similarity=0.294 Sum_probs=357.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-ChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhh
Q 010889 21 EIGLEIAQIALPATLALAADPIASLVDTAFIGQI-GPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTV 99 (498)
Q Consensus 21 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (498)
+..|++++.++|.+++++++.+++++|+.++||+ |++++++++++.++.+....+.
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~----------------------- 62 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLL----------------------- 62 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 3478999999999999999999999999999997 6789999999987765433221
Q ss_pred hhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhc
Q 010889 100 EAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYM 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~ 179 (498)
.|++.+.+..+||++|++|+|+.++ ...+++.++.+++++..++...+.+++++++
T Consensus 63 ---------------------~~~~~g~~~lvsq~~Ga~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~ 118 (441)
T PRK10367 63 ---------------------LFLRMSTTGLTAQAFGAKNPQALAR---ALVQPLLLALGAGALIALLRTPLIDLALHIV 118 (441)
T ss_pred ---------------------HHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1334456778999999999999999 8999999999999988888888889999988
Q ss_pred ccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHH
Q 010889 180 GVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVI 259 (498)
Q Consensus 180 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~i 259 (498)
+.++| +.+.+.+|+++..++.|+..+....++++|+.||+|.+++.+++..++|+++|+++++.+++|+.|+++|+.+
T Consensus 119 g~~~~--v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~i 196 (441)
T PRK10367 119 GGSEA--VLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVI 196 (441)
T ss_pred CCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 76665 8999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCC---cc---chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 010889 260 SQYLISLILLWKLIEEVDLLPPS---SK---DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQI 333 (498)
Q Consensus 260 s~~i~~l~~~~~~~~~~~~~~~~---~~---~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i 333 (498)
++.+..++..++++++++..+.+ ++ +...||+++.|.|..++.......+.+.+.+++++|++++|+|+++.++
T Consensus 197 s~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i 276 (441)
T PRK10367 197 AEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTL 276 (441)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999888777766543211111 11 1246899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHH
Q 010889 334 WLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPF 413 (498)
Q Consensus 334 ~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~ 413 (498)
.++.+++..+++++.+|+++|++|++|+|++|+..+++.++.+..+...++.+..+++++.++|++|+|+.+.+..++++
T Consensus 277 ~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i 356 (441)
T PRK10367 277 LTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIW 356 (441)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010889 414 IAVTQPINALAFVFDGINFGAS---DFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSG 489 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~~~ 489 (498)
.++..+.........+++++.+ |+|.++........ +..+..+.+|+.|+|++..+++.++.++..+++|++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~----~~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 357 QVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFA----LTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH----HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876443323433344444444 58888886665422 222334578999999999999999999998888743
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8.5e-46 Score=381.70 Aligned_cols=422 Identities=22% Similarity=0.246 Sum_probs=377.3
Q ss_pred ccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhh
Q 010889 18 RKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRL 97 (498)
Q Consensus 18 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (498)
+.++..|++++.++|..++++.+.+.+.+|+.+++++|++++++++++.++......+
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~---------------------- 63 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILF---------------------- 63 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3456789999999999999999999999999999999999999999886654322111
Q ss_pred hhhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 010889 98 TVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILN 177 (498)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 177 (498)
..|++.+.+..+||++|++|+++.++ ..++++.+...++++.+++.+.+++++.+
T Consensus 64 ----------------------~~g~~~a~~~~vs~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 118 (456)
T PRK01766 64 ----------------------GHGLLLALTPIVAQLNGAGRRERIAH---QVRQGLWLALFLSVLIMLVLYNAVPPILN 118 (456)
T ss_pred ----------------------HHHHHHHHHHHHHHHhcCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11334456788999999999999998 89999999999999998898999999999
Q ss_pred hcccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh----hcchhhhH
Q 010889 178 YMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGA 253 (498)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~----~~~gv~Ga 253 (498)
+++.++| +.+.+.+|+++.+++.++..+...+++++|+.||+|.+++.+.++.++|+++++++++. +++|+.|+
T Consensus 119 l~~~~~~--~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Ga 196 (456)
T PRK01766 119 MMNLEPE--VADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGC 196 (456)
T ss_pred HcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccH
Confidence 9876554 78899999999999999999999999999999999999999999999999999999864 57899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC--C-----CCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Q 010889 254 AIAHVISQYLISLILLWKLIEEVDLL--P-----PSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAA 326 (498)
Q Consensus 254 a~a~~is~~i~~l~~~~~~~~~~~~~--~-----~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~ 326 (498)
++++.+++.+..++..++.+++++.. + .+.+...+|++++.++|..++.......+.+++.+++++|++++++
T Consensus 197 a~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa 276 (456)
T PRK01766 197 GVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAA 276 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 99999999999998887776543210 1 1223345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHH
Q 010889 327 FQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQL 406 (498)
Q Consensus 327 ~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 406 (498)
++++.++.++...+..+++.+..|.++|++|++|++++|+..+.+..+++.++++.++++..+++++.++|++|+++.+.
T Consensus 277 ~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~ 356 (456)
T PRK01766 277 HQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVAL 356 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHH-HHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHH
Q 010889 407 IGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSV-AVVSILCLFILS--SSHGYVGIWVALSMYMSLRAIAGF 483 (498)
Q Consensus 407 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~i~i~l~~~l~--~~~G~~G~~ia~~~~~~i~~~~~~ 483 (498)
+..++++..+..++++++....+++++.||++.+++..+.. +++++|+.+++. +.+|+.|+|+++.+++.+..++.+
T Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~ 436 (456)
T PRK01766 357 ASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLL 436 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999977765 589999998876 468999999999999999999988
Q ss_pred HHHHc
Q 010889 484 LRIGS 488 (498)
Q Consensus 484 ~~~~~ 488 (498)
+++++
T Consensus 437 ~~~~~ 441 (456)
T PRK01766 437 LRLRK 441 (456)
T ss_pred HHHHH
Confidence 88873
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.4e-36 Score=317.37 Aligned_cols=414 Identities=17% Similarity=0.128 Sum_probs=345.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhh-hhhhhhhHHHHHHHHhhc-cchheeehhhhhhhhHHhhhhhhhh
Q 010889 26 IAQIALPATLALAADPIASLVDTAFIGQ-IGPVEL-AAVGVSIAIFNQVSRITI-FPLVSVTTSLVAEEDTIKRLTVEAH 102 (498)
Q Consensus 26 ~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (498)
++|.+.-.+.+++.+.+++++|.++++| +|++++ ++++.+.++.+.+..+.. .++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~---------------------- 59 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAF---------------------- 59 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHH----------------------
Confidence 5688889999999999999999999999 999999 899999888765543321 111
Q ss_pred hHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhh-hhhhhhhhHHHHHHHHH-HHHHHHHHHHHHhhHHHHhhcc
Q 010889 103 EEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEAR-HERKHIPSASSALVIGS-VLGLIQAFFVIAYAKPILNYMG 180 (498)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~i~~~~~ 180 (498)
.+..+++..++++++ +.++ .+.+++.... ..+++..++.+.+++++.+++.
T Consensus 60 ------------------------~~a~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (502)
T TIGR01695 60 ------------------------NSAFVPVFTKAKKKEKEARR---AFANTVTTLLILSLLLVVLIGIFFAPFVISLLA 112 (502)
T ss_pred ------------------------HHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122344444555543 4444 4555555444 4444456777888899988874
Q ss_pred cCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHH--HHHH
Q 010889 181 VNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAA--IAHV 258 (498)
Q Consensus 181 ~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa--~a~~ 258 (498)
.+.+++..+.+.+|+++..++.++..+....++++|+.||++.+++.+++..+++++..+++ ..++|..|++ ++++
T Consensus 113 ~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~ 190 (502)
T TIGR01695 113 PGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVL 190 (502)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHH
Confidence 22222357889999999999999999999999999999999999999999988877644333 3678999988 9999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCC--CccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Q 010889 259 ISQYLISLILLWKLIEEVDLLPP--SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLA 336 (498)
Q Consensus 259 is~~i~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~ 336 (498)
+++.+..++..++.+|+..+.++ +.++..+|++++++.|..++.....+...+|+.+.+.+|++++++|+.+.++.++
T Consensus 191 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~ 270 (502)
T TIGR01695 191 IGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQL 270 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 99999988887776654332233 3345578999999999999999999999999988777799999999999999988
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc----CHHHHHHHHhhH
Q 010889 337 TSL-LADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK----DLKVLQLIGVGI 411 (498)
Q Consensus 337 ~~~-~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l 411 (498)
+.. +..+++++..|.++++++++|++++|+..++..++...++.|.++++.++++++.+++.+ |+|..+.+..++
T Consensus 271 ~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l 350 (502)
T TIGR01695 271 PLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATIL 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 654 688999999999999999999999999999999999999999999999999999999875 567788899999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010889 412 PFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGS 490 (498)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~~~~ 490 (498)
++++++.++.+.+.+..+.+++.||+|.+++......++++++++++++.+|..|+|+++.+++.+...+..++++|+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~ 429 (502)
T TIGR01695 351 AAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRL 429 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998889999999999999999999999999999999999888877654
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5.9e-35 Score=304.15 Aligned_cols=408 Identities=18% Similarity=0.228 Sum_probs=343.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhhhhhHH
Q 010889 27 AQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEE 105 (498)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (498)
.|-+.|.+++++.+.+.+++|+.+++| +|++++|+++.+.++.+....+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~--------------------------- 54 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTG--------------------------- 54 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhC---------------------------
Confidence 467899999999999999999999999 8999999999998877654433332
Q ss_pred HhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccCCCc
Q 010889 106 KLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDS 185 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 185 (498)
|.+.+.++.++|+.|++|+++.++ .+.+++++....+++..++.+.+++++.+.+..+++
T Consensus 55 ----------------Gl~~a~~~~is~~~~~~~~~~~~~---~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~- 114 (488)
T TIGR02900 55 ----------------GLPVAISKFVAEASAKNDRKNIKK---ILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER- 114 (488)
T ss_pred ----------------CcHHHHHHHHHHHHhccchhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh-
Confidence 233345667888888899988888 899999999999999888889999998877654332
Q ss_pred cchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh-----hcchhhhHHHHHHHH
Q 010889 186 PMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL-----FNWGVSGAAIAHVIS 260 (498)
Q Consensus 186 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~-----~~~gv~Gaa~a~~is 260 (498)
...++++..+..++..+....++++|+.+|+|..+..+.++.++|+.++..++.. .++++.|+++++.++
T Consensus 115 -----~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~ 189 (488)
T TIGR02900 115 -----SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLG 189 (488)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 2456788889999999999999999999999999999999999998876666542 357788999999999
Q ss_pred HHHHHHHHHHHHHHhccc-CCC------CccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh----C---hH---H
Q 010889 261 QYLISLILLWKLIEEVDL-LPP------SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ----G---ST---S 323 (498)
Q Consensus 261 ~~i~~l~~~~~~~~~~~~-~~~------~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~----g---~~---~ 323 (498)
+.+..+...++++++++. .+. +.++..+|+++++++|.+++++...+...+|+.++++. | .+ .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~ 269 (488)
T TIGR02900 190 ELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSL 269 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999877666544321 111 11233679999999999999999999999999998764 2 22 2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHH
Q 010889 324 MAAF-QVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLK 402 (498)
Q Consensus 324 va~~-~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 402 (498)
++.| +++.++.+++..+..+++++..|.+++++|++|+|+.|+..++..++...++.|.+.++..+++++..++.++++
T Consensus 270 ~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 349 (488)
T TIGR02900 270 YGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD 349 (488)
T ss_pred HHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3333 456678888888899999999999999999999999999999999999999999999999999999998876543
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHH
Q 010889 403 VLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILS--SSHGYVGIWVALSMYMSLRAI 480 (498)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~--~~~G~~G~~ia~~~~~~i~~~ 480 (498)
+.++++++++..++...+....+.+++.||+|..++..+...+++++++++++ |.+|+.|+|+++.+++.+..+
T Consensus 350 ----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~ 425 (488)
T TIGR02900 350 ----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTI 425 (488)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred HHHHHHHcCC
Q 010889 481 AGFLRIGSGS 490 (498)
Q Consensus 481 ~~~~~~~~~~ 490 (498)
+..++.+|..
T Consensus 426 ~~~~~~~~~~ 435 (488)
T TIGR02900 426 LNLAEIKKNI 435 (488)
T ss_pred HHHHHHHHHh
Confidence 9988887543
No 9
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.8e-33 Score=282.85 Aligned_cols=401 Identities=15% Similarity=0.111 Sum_probs=333.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhhhhhH
Q 010889 26 IAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEE 104 (498)
Q Consensus 26 ~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (498)
++|-+.....+.+...+.+++-..+++| +|++++|.++...++...+..+...
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~-------------------------- 56 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGA-------------------------- 56 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcC--------------------------
Confidence 5677788888999999999999999999 9999999999887776654433332
Q ss_pred HHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccCCC
Q 010889 105 EKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSD 184 (498)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~ 184 (498)
|.+++.++.++|+ ++|+++.++ .+++++.+....+++.+++.+.+.+++...++.++|
T Consensus 57 -----------------G~~~a~~~~ia~~--~~~~~~~~~---~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~ 114 (416)
T PRK15099 57 -----------------GIFNGVTKYVAQY--HDQPQQLRA---VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD 114 (416)
T ss_pred -----------------CccceeeeeHHhc--CCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 2233345566666 566666666 899999999999999999999999999887764443
Q ss_pred ccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHHHHHHH
Q 010889 185 SPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLI 264 (498)
Q Consensus 185 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~is~~i~ 264 (498)
...+..+..+..++..+.....+.+|+.||++.++..++.+.++|+.+ +++.+. ..|+.|+++|+++++.+.
T Consensus 115 ------~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~ 186 (416)
T PRK15099 115 ------YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALV 186 (416)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHH
Confidence 235566666666677888899999999999999999999999999877 444432 249999999999999998
Q ss_pred HHHHHHHHHHhccc----CCCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhChHHHHHHHHHHHHHHH-HH
Q 010889 265 SLILLWKLIEEVDL----LPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAA-RQGSTSMAAFQVCLQIWLA-TS 338 (498)
Q Consensus 265 ~l~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~-~~g~~~va~~~ia~~i~~~-~~ 338 (498)
.+...++.+|+++. .+.++++..+|+++++|.|..+++....+....++.+++ .+|+++++.|+++.|+.+. ..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~ 266 (416)
T PRK15099 187 VLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQ 266 (416)
T ss_pred HHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHH
Confidence 88776666554331 123444556799999999999999999999999999996 6699999999999999885 58
Q ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHh
Q 010889 339 LLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQ 418 (498)
Q Consensus 339 ~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~ 418 (498)
.+..+++++..|.+++. +|.|+.++..++..+.....+.+.++.+.++++++++++.+|+ ++.+.+++++++++.
T Consensus 267 ~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~ 341 (416)
T PRK15099 267 FITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGD 341 (416)
T ss_pred HHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHH
Confidence 89999999999999995 6789999999999999999999999999999999999998765 345788999999999
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 419 PINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 419 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
++...+........+.++++......+...+++++++++++|.+|..|+++++.+++.+...+..+..+
T Consensus 342 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 342 VLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888877778888888888888899999999999999999999999999999999988776655
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.5e-33 Score=279.91 Aligned_cols=334 Identities=34% Similarity=0.524 Sum_probs=295.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhhhhhHHHhhhcc
Q 010889 32 PATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGF 111 (498)
Q Consensus 32 p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (498)
|.+++++...+.+.+|+.+++++|++++++++++..+.+....+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~----------------------------------- 45 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSIL----------------------------------- 45 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHH-----------------------------------
Confidence 788999999999999999999999999999999866544322111
Q ss_pred cchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccCCCccchhhh
Q 010889 112 ATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPA 191 (498)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~ 191 (498)
.|++++.++.++|+.|++|+|+.++ ..++++.+...++++.+++.+.+++++.++++.+++ ..+++
T Consensus 46 ---------~~i~~~~~~~~s~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~ 111 (342)
T TIGR00797 46 ---------MGLGTATTALVAQAVGAGNYQRLGR---QAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELA 111 (342)
T ss_pred ---------HHHHHhHHHHHHHHHCCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHH
Confidence 1344556778899999999999988 899999999999999999999999999998864444 67889
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHh-hhc-chhhhHHHHHHHHHHHHHHHHH
Q 010889 192 QQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIF-LFN-WGVSGAAIAHVISQYLISLILL 269 (498)
Q Consensus 192 ~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~-~~~-~gv~Gaa~a~~is~~i~~l~~~ 269 (498)
..+++++++..++..+.....+.+|+.||++.+...++++.++++++++++++ ..+ +|+.|+++++.+++.+..++..
T Consensus 112 ~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~ 191 (342)
T TIGR00797 112 QDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLL 191 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887 556 7899999999999999999887
Q ss_pred HHHHHhcccC-----CCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 270 WKLIEEVDLL-----PPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGL 344 (498)
Q Consensus 270 ~~~~~~~~~~-----~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i 344 (498)
++.+|+.+.. +.++++..+|+++++++|.+++++...+.+.+++.+++.+|++++++|+++.++.++...+..++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~ 271 (342)
T TIGR00797 192 YYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGF 271 (342)
T ss_pred HHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776532221 13344456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHH
Q 010889 345 AVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFI 414 (498)
Q Consensus 345 ~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 414 (498)
+++..|.++++++++|.|+.++..+++++..+..+++.++++.++++++.++|++|+++.+.+..++++.
T Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 272 GIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999888888764
No 11
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.2e-29 Score=259.23 Aligned_cols=372 Identities=17% Similarity=0.199 Sum_probs=324.9
Q ss_pred hHHHHHHHhhhhhhhhcccchhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccCCCccchhhhh
Q 010889 115 EEMEELISEVECKTMTLNNISAKV--EARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQ 192 (498)
Q Consensus 115 ~~~~~~~~~g~~~~~~vs~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 192 (498)
+.++++++.|.-.+.+++.+...+ ++++.++ ..++.+.....+.++++++.++++|++.+.+..+.|++..+.+.
T Consensus 22 ~~l~~l~~~gal~~~~IP~~~~~~~~~~~~~~~---f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~ 98 (451)
T PF03023_consen 22 NFLRSLLAGGALSAAFIPVFSKAREKGEEEARR---FISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAV 98 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHH
Confidence 445566666655677777776665 4444554 67777778888888888899999999999997666666789999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcch---hhhHHHHHHHHHHHHHHHHH
Q 010889 193 QYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWG---VSGAAIAHVISQYLISLILL 269 (498)
Q Consensus 193 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~g---v~Gaa~a~~is~~i~~l~~~ 269 (498)
+++++..+..++..+..++.+.+|+++|...+....++.++..++...++ ...+| +.+.+++.+++..+..++..
T Consensus 99 ~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~--~~~~~~~~i~~la~g~~~g~~~~~l~~l 176 (451)
T PF03023_consen 99 QLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLL--SNSWGQENIYALAWGVLIGAIIQFLIQL 176 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888887665543333 24466 89999999999999999888
Q ss_pred HHHHHhcccCC--CCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 010889 270 WKLIEEVDLLP--PSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATS-LLADGLAV 346 (498)
Q Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~-~~~~~i~~ 346 (498)
...+|...+.+ .+++++..|++++...|..+.....++...+|+.+.+.+++..+++++.+.++.+++. .+..++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~t 256 (451)
T PF03023_consen 177 PYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSIST 256 (451)
T ss_pred HHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777554433 4455667899999999999999999999999999999999999999999999999855 66889999
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc----CHHHHHHHHhhHHHHHHHhHHHH
Q 010889 347 AAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK----DLKVLQLIGVGIPFIAVTQPINA 422 (498)
Q Consensus 347 a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~ 422 (498)
+..|.++++..++|.++.++..++.++....+.+|.++++..+++++++++.. |.+..+.....+++++++.++.+
T Consensus 257 v~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~ 336 (451)
T PF03023_consen 257 VVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYA 336 (451)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999988752 56667889999999999999999
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010889 423 LAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSG 491 (498)
Q Consensus 423 ~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~~~~~ 491 (498)
.+..+...+++.+|+|.+.+..+.+.++++.+++++.+.+|..|+++++.++..+..++..+.++|+.+
T Consensus 337 l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 337 LNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999988887655
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=3.5e-28 Score=244.31 Aligned_cols=423 Identities=15% Similarity=0.096 Sum_probs=349.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cCh-hhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhhh
Q 010889 24 LEIAQIALPATLALAADPIASLVDTAFIGQ-IGP-VELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEA 101 (498)
Q Consensus 24 ~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (498)
.+++|.++-.....+.+.+.+++...+++. +|+ ...+++.++..+.|
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN------------------------------- 55 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPN------------------------------- 55 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHH-------------------------------
Confidence 456677777777777888888888888888 887 45567777765554
Q ss_pred hhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccc
Q 010889 102 HEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGV 181 (498)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~ 181 (498)
.++|++++|.=.+.+++-+--+++++..++..+...........+.+.++++..+++|++.+....
T Consensus 56 --------------~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~ 121 (518)
T COG0728 56 --------------LLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLA 121 (518)
T ss_pred --------------HHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667777666677666655555443333222444444466667777888889999999966654
Q ss_pred CC-CccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHHH
Q 010889 182 NS-DSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVIS 260 (498)
Q Consensus 182 ~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~is 260 (498)
+. |++....+....++..+..++..+.....+.+|+.+|...+.+..++.++.-+.....+....+....+.+++..++
T Consensus 122 ~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~G 201 (518)
T COG0728 122 PGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIG 201 (518)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 43 21122357888899999999999999999999999999999999998888777555544433333578999999999
Q ss_pred HHHHHHHHHHHHHHhcccC--CCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 010889 261 QYLISLILLWKLIEEVDLL--PPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATS 338 (498)
Q Consensus 261 ~~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~ 338 (498)
.+.+.++.+..++|..-.. ++++++...|++.+.-.|..+.....++...+|+.+.+...+..++.++.+.++.+++.
T Consensus 202 g~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPl 281 (518)
T COG0728 202 GLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPL 281 (518)
T ss_pred HHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhH
Confidence 9999999999988864333 44455568899999999999999999999999999999999999999999999999955
Q ss_pred -HHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc----CHHHHHHHHhhHHH
Q 010889 339 -LLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK----DLKVLQLIGVGIPF 413 (498)
Q Consensus 339 -~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~ 413 (498)
.+..+++++..|.+|++..++|.++.++..+++++.++++++|.+.++..+++++++++.. +++......+.++.
T Consensus 282 Gifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~ 361 (518)
T COG0728 282 GIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAA 361 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999977742 34556778999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010889 414 IAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSG 491 (498)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~~~~~ 491 (498)
++++.++.....++...+++.+|+|.+++..+++.++++.++..+.+.+|..|++.+..++.++.+.+.++.++|+..
T Consensus 362 y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 362 YSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999998888888776553
No 13
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=1.8e-27 Score=247.88 Aligned_cols=399 Identities=11% Similarity=0.083 Sum_probs=326.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhh
Q 010889 22 IGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVE 100 (498)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (498)
..|+..+-+....+++....+.+++...+++| +||++.|.++.+.++.+....+..+++.. +.+
T Consensus 3 ~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~---aii------------ 67 (492)
T PRK10459 3 LREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGA---SII------------ 67 (492)
T ss_pred hHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHH---HHH------------
Confidence 45778888999999999999999999999999 99999999999988887766555544322 110
Q ss_pred hhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcc
Q 010889 101 AHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMG 180 (498)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 180 (498)
++++++ ++ ..++.++.....+++..++.+.+++++.+.++
T Consensus 68 ------------------------------------~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 107 (492)
T PRK10459 68 ------------------------------------QRQDIS-HL---QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH 107 (492)
T ss_pred ------------------------------------hcccCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111 22 34566677777777777777788888776654
Q ss_pred cCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHHH
Q 010889 181 VNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVIS 260 (498)
Q Consensus 181 ~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~is 260 (498)
+++ ....+.+..+..++..+.....+.++..+|.+..........+...+....+.+ .++|+.+.+++.+++
T Consensus 108 -~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~ 179 (492)
T PRK10459 108 -NPE------LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVN 179 (492)
T ss_pred -Chh------hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHH
Confidence 222 345677777888888888889999999999999998888888877776665553 578999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHH-
Q 010889 261 QYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATS- 338 (498)
Q Consensus 261 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~-g~~~va~~~ia~~i~~~~~- 338 (498)
..+..+......+++ .+.+.++++...|++++++.|...+++...+...+|+.+++++ |+++++.|+.+.++.+.+.
T Consensus 180 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~ 258 (492)
T PRK10459 180 SSVRTLLFGYFGRKI-YRPALHFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPM 258 (492)
T ss_pred HHHHHHHHHHHhccc-CCccceecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHH
Confidence 988776554333232 2223334556689999999999999999999999999999988 9999999999999998754
Q ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHh
Q 010889 339 LLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQ 418 (498)
Q Consensus 339 ~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~ 418 (498)
.+...++++..|..++. ++|.++.++..++..++...+++|..+++.+++++++.++.+|+ ++.+.+.++++++..
T Consensus 259 ~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~ 334 (492)
T PRK10459 259 KINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVG 334 (492)
T ss_pred HHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHH
Confidence 45666888999999986 67889999999999999999999999999999999998887655 567889999999999
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010889 419 PINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGS 488 (498)
Q Consensus 419 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~~ 488 (498)
.+..........+++.||+|...+..+...++.+|..+.+.+.+|+.|+++++.+++.+......+..+|
T Consensus 335 ~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 335 LLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888899999999999999999999999999999988888887743
No 14
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.97 E-value=3.6e-29 Score=253.52 Aligned_cols=425 Identities=23% Similarity=0.263 Sum_probs=372.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhh
Q 010889 20 DEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTV 99 (498)
Q Consensus 20 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (498)
....|++++++.|.++..+.+++.+++|+.++||+|+.++++.+++.+..+.. .+
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~----~~--------------------- 78 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANIT----GV--------------------- 78 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhccc----ch---------------------
Confidence 36779999999999999999999999999999999999999999997766530 01
Q ss_pred hhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhc
Q 010889 100 EAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYM 179 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~ 179 (498)
..+.|...+.-+.++|++|+++.+.... +..++.......+++.. ..+.+.+++...+
T Consensus 79 ------------------s~~~gl~~aletlcgQa~ga~~~~~lg~---~lqrs~~~l~~~~~~~~-~l~~~~~~il~~l 136 (473)
T KOG1347|consen 79 ------------------SILLGLQLALDTLCGQAFGAKKFTALGV---YLQRSGIVLLVQGLPIS-LLILNSEPILLLL 136 (473)
T ss_pred ------------------HHhhccchhhhcchHhhhcccccchhhH---HHHHHHHHHHHHHHHHH-HHHHccHHHHHHh
Confidence 1123444555678999999999999888 78888877777777776 4577779999999
Q ss_pred ccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHH
Q 010889 180 GVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVI 259 (498)
Q Consensus 180 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~i 259 (498)
++++| +...+..|.+...+..+........+.++|++++.....+.......+|+.+++++++.+++|..|++++..+
T Consensus 137 gq~~~--i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~ 214 (473)
T KOG1347|consen 137 GQDPD--ISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVA 214 (473)
T ss_pred CCChh--HHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHH
Confidence 87776 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-c--cCCCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Q 010889 260 SQYLISLILLWKLIEEV-D--LLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQG--STSMAAFQVCLQIW 334 (498)
Q Consensus 260 s~~i~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g--~~~va~~~ia~~i~ 334 (498)
++++....+..+..... . ...++.+...++++++.++|..++..++++.+.+.....+..+ +.++++.++..++.
T Consensus 215 s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~ 294 (473)
T KOG1347|consen 215 SYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIG 294 (473)
T ss_pred HHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 99999999988876533 1 1112222456789999999999999999999999999999996 58899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHH
Q 010889 335 LATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFI 414 (498)
Q Consensus 335 ~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 414 (498)
...++++.+++.++..++++.+|++|++++|...+......+..+...+..+....+.+..+|++|+++.+...+..+++
T Consensus 295 ~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll 374 (473)
T KOG1347|consen 295 GWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLL 374 (473)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHhhccchhhHHHHH-HHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 010889 415 AVTQPINALAFVFDGINFGASDFAYSAYSM-VSVAVVSILCLFILS--SSHGYVGIWVALSMYMSLRAIAGFLRIGSGSG 491 (498)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~i~i~l~~~l~--~~~G~~G~~ia~~~~~~i~~~~~~~~~~~~~~ 491 (498)
++..++++.+.+..+..++.|+++...+.. ....++.+|..+.+. .++|..|+|++...+..+......+... +.
T Consensus 375 ~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~--~t 452 (473)
T KOG1347|consen 375 ALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTA--RT 452 (473)
T ss_pred HHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHhee--ec
Confidence 999999999999999999999999999854 455788888887776 5789999999999997777766665554 56
Q ss_pred CCCc
Q 010889 492 PWSF 495 (498)
Q Consensus 492 ~w~~ 495 (498)
+|++
T Consensus 453 dW~~ 456 (473)
T KOG1347|consen 453 DWKN 456 (473)
T ss_pred cHHH
Confidence 7764
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=5.2e-24 Score=221.39 Aligned_cols=388 Identities=15% Similarity=0.149 Sum_probs=298.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhh
Q 010889 21 EIGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTV 99 (498)
Q Consensus 21 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (498)
+..++..|-+.....+++...+.+++....++| +|+++.|.++.+.++.+.+..+..+++........
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~i----------- 71 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREI----------- 71 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHH-----------
Confidence 446788899999999999999999999999999 99999999999999988877776655444333322
Q ss_pred hhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 100 EAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPS-ASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
+++..++++...+. . ....+......+.+.........+.
T Consensus 72 --------------------------------a~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 112 (480)
T COG2244 72 --------------------------------AEYREKGEYLLLIL---LSVLLLLLLALILLLLLLLIAYLLAPI---- 112 (480)
T ss_pred --------------------------------HHhhcccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 22222222222222 1 2222222222222211111111110
Q ss_pred cccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHH
Q 010889 179 MGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHV 258 (498)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~ 258 (498)
.+.....+.+..+..+........++.+|+.++.+......... ..-+...+.+. ........++..
T Consensus 113 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~ 179 (480)
T COG2244 113 ---------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGLAVWALV 179 (480)
T ss_pred ---------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHH
Confidence 12345667788899999999999999999999999999884444 11111111111 135556667777
Q ss_pred HHHHHHHHHHHHHHHH-hcccCCCCcc--chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHH
Q 010889 259 ISQYLISLILLWKLIE-EVDLLPPSSK--DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIW 334 (498)
Q Consensus 259 is~~i~~l~~~~~~~~-~~~~~~~~~~--~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~-g~~~va~~~ia~~i~ 334 (498)
.+.............+ +++..+...+ +..+|+.+++++|..+.+....+....|+.+++.+ |+++++.|+.+.++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~ 259 (480)
T COG2244 180 LGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV 259 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHH
Confidence 7777766666555542 2222333333 45789999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHH
Q 010889 335 LATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFI 414 (498)
Q Consensus 335 ~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 414 (498)
.....+.++++++..|.+++.+.++|.++.++..++..++....+.|..+++..+++++..++.+++. ..+...++++
T Consensus 260 ~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il 337 (480)
T COG2244 260 SLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLL 337 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876653 2478999999
Q ss_pred HHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 010889 415 AVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSM 473 (498)
Q Consensus 415 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~ 473 (498)
++..++.+........+++.||++...+....+.++++.+++++++.+|+.|+.+++..
T Consensus 338 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~~g~~g~~~a~~~ 396 (480)
T COG2244 338 ALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPRFGLIGAAIATAS 396 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999933
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=8.9e-21 Score=195.56 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=192.1
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHH
Q 010889 283 SKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYD 362 (498)
Q Consensus 283 ~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~ 362 (498)
++-..+|++++.++|.+++++.......+|+.+++++|++++|+++++.++.++...+..+++++..+.++|++|++|+|
T Consensus 23 ~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 23 YRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhH
Q 010889 363 KATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFT--KDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYS 440 (498)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 440 (498)
++++..++++.+.+..+++.+++...+++++.+++. .|+|+.+.+.+++++..++.++........+.+|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh------ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 441 AYSMVSVAVVSILCLFILSS------SHGYVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 441 ~~~~~~~~~i~i~l~~~l~~------~~G~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
++..+...+++++++++++. .+|+.|+|+|+.+++.+..++..+.+.
T Consensus 183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998899999999988873 679999999999999998877665543
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=8.8e-21 Score=193.88 Aligned_cols=207 Identities=21% Similarity=0.245 Sum_probs=198.1
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 010889 284 KDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDK 363 (498)
Q Consensus 284 ~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~ 363 (498)
.+...|+++++++|.++.++.....+.+|+.++++++++++++-+++.++..+...+..+++.+..+.++|++|+||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHH
Q 010889 364 ATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 443 (498)
+|+..+++....++++++..+....+++++..++.+++|+.+.+.+|+++..++.++..+.....+.+|+.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010889 444 MVSVAVVSILCLFILSSS----HGYVGIWVALSMYMSLRAIAGFLRIGSGS 490 (498)
Q Consensus 444 ~~~~~~i~i~l~~~l~~~----~G~~G~~ia~~~~~~i~~~~~~~~~~~~~ 490 (498)
.+++.++|++++++++.. +|+.|+++|+.+++.+..++..+++++++
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999875 89999999999999999999887776554
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=1.5e-20 Score=193.72 Aligned_cols=203 Identities=19% Similarity=0.139 Sum_probs=187.4
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 010889 284 KDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDK 363 (498)
Q Consensus 284 ~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~ 363 (498)
++..+|++++.++|.+++.+...+...+|+.+++++|++++++++++.++.++...+..+++++..|.++|++|++|+|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHH
Q 010889 364 ATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 443 (498)
+++..+++..+.+.++++..+... +.+++.++++.|+|+.+.+.+++++..++.++..+....++.+++.||++.+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999998877665 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh------ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 444 MVSVAVVSILCLFILSS------SHGYVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 444 ~~~~~~i~i~l~~~l~~------~~G~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
.++..+++++++++++. .+|+.|+++++.+++....+...++++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~ 213 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIR 213 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 479999999999998777665544443
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.88 E-value=2.3e-20 Score=190.73 Aligned_cols=202 Identities=12% Similarity=0.063 Sum_probs=189.7
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Q 010889 286 LKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKA 364 (498)
Q Consensus 286 ~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~-g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~ 364 (498)
++.|++++.++|.+++++.......+|+.+++++ |++++|+.+++.++.++...+..+++.+..+.+||++|++|+|++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~ 85 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQAL 85 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 3468999999999999999999999999999999 788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHH
Q 010889 365 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSM 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 444 (498)
++..++++.+.+..+++.......+.+++.++++.|+|+.+.+.+++++.+++.++.....+..+.+|+.||+|.+++..
T Consensus 86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ 165 (441)
T PRK10367 86 ARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILL 165 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence 99999999999999999888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 445 VSVAVVSILCLFILSS--SHGYVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 445 ~~~~~i~i~l~~~l~~--~~G~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
+++.++++++++++++ .+|+.|+++++.+++.+..++..++++
T Consensus 166 ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~ 210 (441)
T PRK10367 166 VVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVR 210 (441)
T ss_pred HHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 679999999999999998877655544
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=4e-20 Score=190.13 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=192.9
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 010889 285 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDK 363 (498)
Q Consensus 285 ~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~-g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~ 363 (498)
+...|++++.++|.+++++.......+|+.+++++ |++++++++++.++.++...+..+++.+..+.++|++|++|+|+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 34569999999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHH
Q 010889 364 ATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 443 (498)
+++..++...+....+++..+++..+++++.+++..|+++.+.+.+++++..++.++........+.+++.||++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010889 444 MVSVAVVSILCLFILSS--SHGYVGIWVALSMYMSLRAIAGFLRIGSG 489 (498)
Q Consensus 444 ~~~~~~i~i~l~~~l~~--~~G~~G~~ia~~~~~~i~~~~~~~~~~~~ 489 (498)
.+.+.++++++++++++ .+|+.|+++++.+++.+..++..++++++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999976 68999999999999999988876665543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=6.9e-20 Score=189.04 Aligned_cols=204 Identities=18% Similarity=0.156 Sum_probs=192.1
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Q 010889 285 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKA 364 (498)
Q Consensus 285 ~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~ 364 (498)
+..+|++++.++|.+++.+..+....+|+.+++++|++++++++++.++......+..+++.+..|.+||++|++|+|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 44579999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHH
Q 010889 365 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSM 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 444 (498)
++..+.++.+.+..+++.+..+..+++++.+++..|+++.+.+.+++++.+++.++........+.+++.||+|.+++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH------hccchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010889 445 VSVAVVSILCLFILS------SSHGYVGIWVALSMYMSLRAIAGFLRIGS 488 (498)
Q Consensus 445 ~~~~~i~i~l~~~l~------~~~G~~G~~ia~~~~~~i~~~~~~~~~~~ 488 (498)
+++.+++++++++++ |.+|+.|+++++.+++.+..++..++.++
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 989999999998887 46899999999999999998887766654
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.79 E-value=5.3e-17 Score=161.17 Aligned_cols=192 Identities=20% Similarity=0.211 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q 010889 297 LLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSV 376 (498)
Q Consensus 297 p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~ 376 (498)
|.+++++...+...+|+.+++++|++++++|+.+.++..+...+..+++++..|.+++++|++|+|++++..++...+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHH
Q 010889 377 VLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLF 456 (498)
Q Consensus 377 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~ 456 (498)
+.+++.++++.++++++.+++..|++..+.+..+++++++..++.+...+..+.+++.||++...+..+.+.++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987888888899999999999999999999999999999999999999999999999988
Q ss_pred HHHh-ccc---hHHHHHHHHHHHHHHHHHHHHHHHc
Q 010889 457 ILSS-SHG---YVGIWVALSMYMSLRAIAGFLRIGS 488 (498)
Q Consensus 457 ~l~~-~~G---~~G~~ia~~~~~~i~~~~~~~~~~~ 488 (498)
.+.+ .+| +.|+++++.++.++..++..++.++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876 544 9999999999999998888776664
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.73 E-value=5.2e-15 Score=141.61 Aligned_cols=269 Identities=17% Similarity=0.207 Sum_probs=194.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhhhhhHH
Q 010889 27 AQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEE 105 (498)
Q Consensus 27 ~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (498)
+|-+.....+++...+.+++-..++.| +|+++.|.++...++.+.+..+..+++........
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~----------------- 64 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFI----------------- 64 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------------
Confidence 466777888899999999999999999 99999999999998887766555544433332222
Q ss_pred HhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccCCCc
Q 010889 106 KLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDS 185 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 185 (498)
+++..+ ++..++ +...........+++. .+...+......++.
T Consensus 65 --------------------------~~~~~~--~~~~~~---~~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~- 107 (273)
T PF01943_consen 65 --------------------------AEYKDK--KELRSA---YFSSVLFLLLIFSLIF-----LLILLIASFFGNPSL- 107 (273)
T ss_pred --------------------------HHhhhh--HHHHHH---HHHHHHHHHHHHHHHH-----HHHHHHHHHcCCchH-
Confidence 211111 122222 3333333333333222 222222233332221
Q ss_pred cchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHHHHHHHH
Q 010889 186 PMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLIS 265 (498)
Q Consensus 186 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~is~~i~~ 265 (498)
...+........++........+++++.++.+.....++...+...+...+++.. +.++.+..++..++..+..
T Consensus 108 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 181 (273)
T PF01943_consen 108 -----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSL 181 (273)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
Confidence 1222222222225778888899999999999999999999998888776666643 4458999999999999998
Q ss_pred HHHHHHHHHhcccCCCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 266 LILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLADGL 344 (498)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~-g~~~va~~~ia~~i~~~~~~~~~~i 344 (498)
++..+..+|+.+..+...++...|++++.+.|.+++++...+....|+.+++++ |++++|.|+++.++.+....+..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~ 261 (273)
T PF01943_consen 182 IISLFYLRRKLRPRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSI 261 (273)
T ss_pred HHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877654323333355789999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 010889 345 AVAAQTILASA 355 (498)
Q Consensus 345 ~~a~~p~is~~ 355 (498)
.++..|.+++.
T Consensus 262 ~~~~~P~~s~l 272 (273)
T PF01943_consen 262 STVLFPRLSRL 272 (273)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 24
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.73 E-value=2.5e-15 Score=157.26 Aligned_cols=234 Identities=19% Similarity=0.171 Sum_probs=187.4
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 19 KDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
+++..|++++.+.|..++++...+...+|+.+.+++|++++++++.+..+.+....+...++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i------------------ 279 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISL------------------ 279 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 45678999999999999999999999999998666999999999999777664332211111
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
+.+....+||++|++|+++.++ ...+++.....++.+..+++..+++++.++
T Consensus 280 -------------------------~~~~~P~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l 331 (502)
T TIGR01695 280 -------------------------STVLLPKLSRHASEGNWNELRD---LLNQGIRLSLLLTIPSSFGLLILSIPIVSL 331 (502)
T ss_pred -------------------------HHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123445778889999999988 788999999999999999999999999999
Q ss_pred cccCC--CccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHH
Q 010889 179 MGVNS--DSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIA 256 (498)
Q Consensus 179 ~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a 256 (498)
+.+++ |+|..+.+.+++++++++.++..+.....+.+++.||+|.+++......++|++++++++ +.+|..|++++
T Consensus 332 ~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~--~~~G~~G~~~a 409 (502)
T TIGR01695 332 LFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLI--FPLGLVGIALA 409 (502)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHH
Confidence 87643 334678899999999999999999999999999999999999999999999999998887 56899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccchhhHHHHHhhHHHHHHHH
Q 010889 257 HVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVI 303 (498)
Q Consensus 257 ~~is~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~l~~~ 303 (498)
+.+++.+..++..++.+|+....+ .....+++.|.-.+..++..
T Consensus 410 ~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~as~~m~~ 453 (502)
T TIGR01695 410 TSAASMVSSVLLYLMLNRRLKGIL---PFGVLKVLAKLVIASAIIGG 453 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCC---chHHHHHHHHHHHHHHHHHH
Confidence 999999999988777766543211 12223455555444444433
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.72 E-value=3.7e-18 Score=150.34 Aligned_cols=161 Identities=24% Similarity=0.380 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q 010889 297 LLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSV 376 (498)
Q Consensus 297 p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~ 376 (498)
|..++.+.....+.+++.+++++|++++++++++.++.++...+..+++++..|.+||++|++|+|++++..++++.+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HHHHHHH
Q 010889 377 VLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVA-VVSILCL 455 (498)
Q Consensus 377 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~i~i~l~ 455 (498)
..+++.++....+++++.++|++|+|+.+.+.+++++..+..++........+++++.||+|..++..+... ++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887765 9999998
Q ss_pred HH
Q 010889 456 FI 457 (498)
Q Consensus 456 ~~ 457 (498)
|+
T Consensus 161 yl 162 (162)
T PF01554_consen 161 YL 162 (162)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.66 E-value=3.9e-14 Score=145.10 Aligned_cols=211 Identities=22% Similarity=0.289 Sum_probs=183.7
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 19 KDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
.++..|++++...|.+++....++..++|+.+.+++++.++++.+.+..+.+....+...++..+..|.
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~----------- 261 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPK----------- 261 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 456689999999999999999999999999999999999999999999999887766665555544443
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
+||...++|.++.++ ...+++.....+.++.++.+..++++++++
T Consensus 262 --------------------------------ls~~~~~~d~~~~~~---~~~~~l~~~~~i~iP~~~~~~~~a~~iV~l 306 (451)
T PF03023_consen 262 --------------------------------LSRLAAEGDWEEFRK---TLRKALRLILLILIPASIGLIVLAEPIVRL 306 (451)
T ss_pred --------------------------------HHHHHhcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344446778888887 899999999999999999999999999988
Q ss_pred ccc--CCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHH
Q 010889 179 MGV--NSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIA 256 (498)
Q Consensus 179 ~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a 256 (498)
+.. +-+.+-.+....++.+++++.|+..+...+...+.+++|+|.++..+.++.++|++++.++. +.+|+.|.+++
T Consensus 307 lf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~--~~~g~~Glala 384 (451)
T PF03023_consen 307 LFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLV--PFFGVAGLALA 384 (451)
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 863 22333467788899999999999999999999999999999999999999999999998877 67999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 010889 257 HVISQYLISLILLWKLIEEVD 277 (498)
Q Consensus 257 ~~is~~i~~l~~~~~~~~~~~ 277 (498)
+.++.++..+.+.+..+|+.+
T Consensus 385 ~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 385 TSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999888877765
No 27
>PRK10459 colanic acid exporter; Provisional
Probab=99.63 E-value=4.7e-13 Score=139.66 Aligned_cols=203 Identities=11% Similarity=0.052 Sum_probs=163.0
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhh
Q 010889 19 KDEIGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRL 97 (498)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (498)
+++..|++++++.|.+.+++...+++.+|+.++|+ +|++++|.|+.+..+.+....+....+..+..|..+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s-------- 273 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFA-------- 273 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------
Confidence 34668999999999999999999999999999999 899999999999888765433322222222222211
Q ss_pred hhhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 010889 98 TVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILN 177 (498)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 177 (498)
+. ++|+++.++ .+.+.......++++..+.+..++|+++.
T Consensus 274 -----------------------------------~~--~~~~~~~~~---~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ 313 (492)
T PRK10459 274 -----------------------------------KI--QDDTEKLRV---GFLKLLSVLGIINFPLLLGLMVVSNNFVP 313 (492)
T ss_pred -----------------------------------Hh--cCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11 345555555 67888888888899999999999999999
Q ss_pred hcccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHH
Q 010889 178 YMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAH 257 (498)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~ 257 (498)
++.+++ +.++...++++++...+..........+++.||+|.+...+++..+++++..+.+. ..+|+.|+++++
T Consensus 314 ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~ 387 (492)
T PRK10459 314 LVFGEK----WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGF 387 (492)
T ss_pred HhcChh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHH
Confidence 887654 67788999999999999999999999999999999999999888888877665555 568999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 010889 258 VISQYLISLILLWKLIEE 275 (498)
Q Consensus 258 ~is~~i~~l~~~~~~~~~ 275 (498)
.+++.+......++..||
T Consensus 388 ~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 388 LLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888887777454
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.63 E-value=1.2e-15 Score=134.31 Aligned_cols=161 Identities=23% Similarity=0.468 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhhhhhHHHhhhcc
Q 010889 32 PATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGF 111 (498)
Q Consensus 32 p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (498)
|..++++.+.+.+.+|+.+++++|++++++++++..+.+....+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~------------------------------------ 44 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFML------------------------------------ 44 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHH------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhh------------------------------------
Confidence 88999999999999999999999999999999998887643321
Q ss_pred cchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccCCCccchhhh
Q 010889 112 ATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPA 191 (498)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~ 191 (498)
..|.++|.+..+||++|++|+|+.++ ..+.++.+...++++..++.+.+.+++.++++.++| +.+.+
T Consensus 45 --------~~g~~~a~~~~~s~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~ 111 (162)
T PF01554_consen 45 --------IFGLATALQILISQNIGAGDYKRAKK---VVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIA 111 (162)
T ss_dssp --------HHHHHHHHHHHHCCCCCSSSTTTCCC---HHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHH
T ss_pred --------cccccccccceeeccccccccccccc---ccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHh
Confidence 13556667889999999999999999 899999999999999999999999999999986665 89999
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HHHHHhhHH
Q 010889 192 QQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGD-LANVILDPI 241 (498)
Q Consensus 192 ~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~l 241 (498)
.+|+++..+..|+.......++++++.||+|.+++.+.+.. ++|++++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 112 RQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999999999999999999 999998874
No 29
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.63 E-value=6.9e-14 Score=145.80 Aligned_cols=204 Identities=18% Similarity=0.313 Sum_probs=163.0
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhh------hhhhh----hhHHHHHHHHhhccchheeehhhh
Q 010889 20 DEIGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVEL------AAVGV----SIAIFNQVSRITIFPLVSVTTSLV 88 (498)
Q Consensus 20 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 88 (498)
++..|+++++++|.+++++...+.+.+|+.++++ +++... +.++. +.++.. .+ ....
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~-------~~-~~~~---- 288 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLT-------FP-AVIT---- 288 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHH-------hH-HHHH----
Confidence 4578999999999999999999999999999998 543322 11111 111111 11 0001
Q ss_pred hhhhHHhhhhhhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 010889 89 AEEDTIKRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFV 168 (498)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (498)
.+++.+....++|+.|++|+++.++ ...+...+...++.+..+.+
T Consensus 289 --------------------------------~~l~~~~~p~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 333 (488)
T TIGR02900 289 --------------------------------SSLSTALVPDISEAMAKKNYSSIEK---RINQAIKISLLLGLITTVIL 333 (488)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 1222334566788889999888888 78899999999999999999
Q ss_pred HHhhHHHHhhcccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcc
Q 010889 169 IAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNW 248 (498)
Q Consensus 169 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~ 248 (498)
..+++++..++.+++ ++.+++++.++..++........+.+++.||+|.+++.+.+..++|++++++++..+.+
T Consensus 334 ~~~~~~ii~~~~~~~------~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~ 407 (488)
T TIGR02900 334 LVIPDELGALFYGRP------DAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSI 407 (488)
T ss_pred HHHHHHHHHHhcCCC------chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999887332 36788999999999999999999999999999999999999999999999888766789
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010889 249 GVSGAAIAHVISQYLISLILLWKLIEEV 276 (498)
Q Consensus 249 gv~Gaa~a~~is~~i~~l~~~~~~~~~~ 276 (498)
|+.|+++++++++.+..++..+..+|..
T Consensus 408 G~~Gaaia~~i~~~~~~~~~~~~~~~~~ 435 (488)
T TIGR02900 408 NIYGYAITFIITSVLVTILNLAEIKKNI 435 (488)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888776654
No 30
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.59 E-value=2.8e-12 Score=129.89 Aligned_cols=240 Identities=22% Similarity=0.193 Sum_probs=191.3
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 19 KDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
+++..|++.+...|.+++..++++..++|+.+.+.+.+...+.+..+..+++...++....+..+..+-
T Consensus 227 ~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~----------- 295 (518)
T COG0728 227 KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPS----------- 295 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------
Confidence 447889999999999999999999999999999999999999999999999887777665554444443
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
+||...++|.++.++ ..+.++.++..+.++.++.+..+++|+.+.
T Consensus 296 --------------------------------lSr~~~~~~~~~~~~---~l~~~i~l~lll~lP~~~~l~~la~piv~~ 340 (518)
T COG0728 296 --------------------------------LSRHAANGDWPEFLK---LLDWGLRLTLLLTLPASAGLLVLAEPIVSL 340 (518)
T ss_pred --------------------------------HHHHhhcCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777 799999999999999999999999999988
Q ss_pred cccCCCc--cchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHH
Q 010889 179 MGVNSDS--PMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIA 256 (498)
Q Consensus 179 ~~~~~~~--~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a 256 (498)
++...+. +-.......+..++++.++..+..++...+.+++|+|.|+.+.+++.++|+.+++.+. +.+|..|.+++
T Consensus 341 Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala 418 (518)
T COG0728 341 LFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALA 418 (518)
T ss_pred HhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHH
Confidence 8543321 1245567889999999999999999999999999999999999999999999996666 56888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccchhhHHHHHhhHHHHHHHHHHHHH
Q 010889 257 HVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFC 308 (498)
Q Consensus 257 ~~is~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~l~~~~~~i~ 308 (498)
+.++.++++.++++..+|+....+ ........ ..|..+-..+........
T Consensus 419 ~s~a~~~~~~ll~~~l~k~~~~~~-~~~~~~~~-~~k~~l~~~i~~~~~~~~ 468 (518)
T COG0728 419 TSLAAWVNALLLYYLLRKRLVYLP-GRGWGLFL-ILKLLLASAIMAAALLAL 468 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc-cchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999988888877765433 22222223 455544444444444433
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.53 E-value=6.1e-13 Score=135.70 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=162.0
Q ss_pred ccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhh
Q 010889 18 RKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKR 96 (498)
Q Consensus 18 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (498)
.+++..|++++++.|..+++....+.+..|+.++++ +|++++|+|+.+..+.+.+......++.+...|.
T Consensus 209 ~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~--------- 279 (416)
T PRK15099 209 WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPT--------- 279 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 356778999999999999999999999999999985 9999999999998886654333333443334333
Q ss_pred hhhhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 010889 97 LTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPIL 176 (498)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 176 (498)
++|+ +|+++.++ ...+.......++++..++.+.++|+++
T Consensus 280 ----------------------------------~s~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~a~~ii 319 (416)
T PRK15099 280 ----------------------------------LSRL---TEKRDITR---EIVKALKFVLPAVAAASFTVWLLRDFAI 319 (416)
T ss_pred ----------------------------------HHhc---CChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 34455555 5777778888888888888889999999
Q ss_pred hhcccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHH
Q 010889 177 NYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIA 256 (498)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a 256 (498)
.++.+++ ++++.+++++++++.++...+......+.+.++++......+...+++++++++++ +.+|..|++++
T Consensus 320 ~l~~g~~----~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a 393 (416)
T PRK15099 320 WLLFSNK----FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLI--PLHGALGAAQA 393 (416)
T ss_pred HHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHH
Confidence 9998654 56678899998888888877777776677888888888888888899999999988 66999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 010889 257 HVISQYLISLILLWKLIEE 275 (498)
Q Consensus 257 ~~is~~i~~l~~~~~~~~~ 275 (498)
+.+++.+..+...+...++
T Consensus 394 ~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 394 YMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998877665544
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.52 E-value=1.4e-11 Score=116.37 Aligned_cols=245 Identities=17% Similarity=0.224 Sum_probs=170.3
Q ss_pred HHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhhhhhhhHHHhhhcccchhHHHHHH
Q 010889 43 ASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLTVEAHEEEKLEKGFATSEEMEELI 121 (498)
Q Consensus 43 ~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (498)
.++.-..+++| +|+++.|.++...++......+...+.....
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~------------------------------------- 45 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSL------------------------------------- 45 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 45667788999 9999999999998887765544332221111
Q ss_pred HhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccCCCccchhhhhHHHHHHHhh
Q 010889 122 SEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLG 201 (498)
Q Consensus 122 ~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~l~i~~~~ 201 (498)
.+ ..++|+++.++ ............+++. ..+...+...++ ++ +...++....+.
T Consensus 46 ----------~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~------~~~~~~~~~~~~ 100 (251)
T PF13440_consen 46 ----------VR-SAARDKQDIRS---LLRFSLLVSLLLAVIL----AILAILIAYFFG-DP------ELFWLLLLLALA 100 (251)
T ss_pred ----------HH-hhccCHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHhC-Ch------hHHHHHHHHHHH
Confidence 11 11233333443 3434443333333322 222223333332 22 233455667777
Q ss_pred hHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 010889 202 APAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPP 281 (498)
Q Consensus 202 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~is~~i~~l~~~~~~~~~~~~~~~ 281 (498)
.++.......++.+++++|.+..........+...+...++.+ .+.+..+..++..++..+..++.....+++. +.
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 176 (251)
T PF13440_consen 101 IFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKL---RL 176 (251)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhcccc---CC
Confidence 8888999999999999999999999999999888554444443 3448888999999988887776655333221 22
Q ss_pred CccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010889 282 SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAAR-QGSTSMAAFQVCLQIWLATS-LLADGLAVAAQTILAS 354 (498)
Q Consensus 282 ~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~-~g~~~va~~~ia~~i~~~~~-~~~~~i~~a~~p~is~ 354 (498)
+. +.+.+|.++.+.|..+..+........|..+++. +|++++|.|+++.++.+.+. .+..++++...|.++|
T Consensus 177 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 177 SF-KFSWRRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22 2233458999999999999999999999999999 59999999999999999887 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.46 E-value=1.6e-11 Score=127.84 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=156.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 20 DEIGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 20 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
++..|+++++++|...++++..+.+.+|+.++++ +|++++|.|+.+..+......+. .++..+..|.
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~-~~l~~~l~P~----------- 276 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVA-SALNRVLFPA----------- 276 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHH-HHHHHHHHHH-----------
Confidence 5789999999999999999999999999999999 89999999997766655433222 2333333333
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
++|...++|+++.++ ...+++.....++.+..+.+..+++++...
T Consensus 277 --------------------------------~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~ 321 (480)
T COG2244 277 --------------------------------LSRAYAEGDRKALKK---LLRQSLKLLLLISIPALLGLLLLAPPIITL 321 (480)
T ss_pred --------------------------------HHHHHHcCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 344445566666556 688899999999999999999999999999
Q ss_pred cccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHH
Q 010889 179 MGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHV 258 (498)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~ 258 (498)
+.+++ +..+...+.++++..++..........+++.||++..+..+.++.++|++++++++ +.+|..|++.++
T Consensus 322 ~fg~~----~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~- 394 (480)
T COG2244 322 LFGEK----YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLI--PRFGLIGAAIAT- 394 (480)
T ss_pred ecCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-
Confidence 88666 34488899999999999999999999999999999999999999999999999998 678999999999
Q ss_pred HH
Q 010889 259 IS 260 (498)
Q Consensus 259 is 260 (498)
.+
T Consensus 395 ~~ 396 (480)
T COG2244 395 AS 396 (480)
T ss_pred HH
Confidence 44
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.8e-08 Score=97.71 Aligned_cols=415 Identities=13% Similarity=0.058 Sum_probs=246.9
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 20 DEIGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 20 ~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
++....-.+.+--.+..++...+.+++-..++=| ++++.+|..++-..+. ....-+.+++.
T Consensus 4 ~~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL------------~sTiLFlsREa------ 65 (530)
T KOG2864|consen 4 DSVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELL------------QSTILFLSREA------ 65 (530)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHH------------HHHHHHhhHHH------
Confidence 3445555666666677777777776665555555 9999988876653332 12222333321
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
-+...+..|..+.|+..+ +.+..+.+..++....+....+ .+.+
T Consensus 66 -----------------------------ir~A~l~~gs~~~d~~te----~~n~~wlS~~L~~~i~~~~i~~---wl~~ 109 (530)
T KOG2864|consen 66 -----------------------------IRLAELRIGSEPADTWTE----FINLLWLSVPLQTAINVACIYF---WLGF 109 (530)
T ss_pred -----------------------------HHHHhccCCCCCCccHHH----HHHhhhhhhhHHHHHHHHHHHH---HHHH
Confidence 111122223333233444 3345555555555443332222 2233
Q ss_pred cccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHh-h-hcchhhhHHHH
Q 010889 179 MGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIF-L-FNWGVSGAAIA 256 (498)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~-~-~~~gv~Gaa~a 256 (498)
....++....+.......+...++..-.+..-+.-..|..-+.+.-........+++.+..+..++ + ..+++..-|+|
T Consensus 110 ~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAla 189 (530)
T KOG2864|consen 110 LSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALA 189 (530)
T ss_pred hhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 322222101122222233333333333333333344444555555566666666666333333332 2 35666666776
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC------------CCccch-----hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010889 257 HVISQYLISLILLWKLIEEVDLLP------------PSSKDL-----KFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ 319 (498)
Q Consensus 257 ~~is~~i~~l~~~~~~~~~~~~~~------------~~~~~~-----~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~ 319 (498)
.....+.-.++..+++.+.++..+ ++..+. .-++..+.-....-+.+.-++.+.-+..+++..
T Consensus 190 ql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~ 269 (530)
T KOG2864|consen 190 QLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFT 269 (530)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeee
Confidence 666655555544444444333110 000000 115677777777888888888877776666633
Q ss_pred ---ChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhh
Q 010889 320 ---GSTSMAAFQVCLQIWLA-TSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSV---VLGLVLTVNLLVGLPF 392 (498)
Q Consensus 320 ---g~~~va~~~ia~~i~~~-~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 392 (498)
+-++-|.|.+.++..++ .-++...+-.......+|...+++.|+.|+.........- .+++.....-...++.
T Consensus 270 ~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~ 349 (530)
T KOG2864|consen 270 ELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYV 349 (530)
T ss_pred ccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHH
Confidence 56788899999998887 5667888888999999999999988888887654433333 3332222222233344
Q ss_pred hccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHH---HHHHHHHHHHHHHHHHHhccchHHHHH
Q 010889 393 SSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAY---SMVSVAVVSILCLFILSSSHGYVGIWV 469 (498)
Q Consensus 393 i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~i~i~l~~~l~~~~G~~G~~i 469 (498)
.+.++.+++-....+...++++|...++.+++.+..+...+..+.+..-. ...+..++.+.++++++..+|..|...
T Consensus 350 vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIl 429 (530)
T KOG2864|consen 350 VLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLIL 429 (530)
T ss_pred HHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHH
Confidence 56666543211123558999999999999999999999999998888776 356778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 010889 470 ALSMYMSLRAIAGFLRIGS 488 (498)
Q Consensus 470 a~~~~~~i~~~~~~~~~~~ 488 (498)
|..+.+.++-+....+.++
T Consensus 430 ANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 430 ANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888666553
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.17 E-value=1.3e-09 Score=111.27 Aligned_cols=201 Identities=16% Similarity=0.098 Sum_probs=183.8
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCHHHH
Q 010889 286 LKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLA-TSLLADGLAVAAQTILASAFVKKDYDKA 364 (498)
Q Consensus 286 ~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~-~~~~~~~i~~a~~p~is~~~g~~~~~~~ 364 (498)
...|++.+++.|..+.....+....++..++++.|+.++++.+++....+. -+.+..++..+..|..+|.+|.++++..
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~l 104 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTAL 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchh
Confidence 356889999999999999999999999999999999999999999988876 6667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHH
Q 010889 365 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSM 444 (498)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 444 (498)
....+++.........|.+. ++.+.+++...+..|+++.+.+..+.++..+..+-..........+++.+++....+..
T Consensus 105 g~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 105 GVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999888888888776 45666999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 445 VSVAVVSILCLFILSS--SHGYVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 445 ~~~~~i~i~l~~~l~~--~~G~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
....++++++++++.+ .+|..|+.++..+++........++.+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~ 228 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAV 228 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhe
Confidence 9999999999999975 678999999999999988777665544
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.06 E-value=8.4e-08 Score=99.46 Aligned_cols=202 Identities=15% Similarity=0.122 Sum_probs=162.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--h-ChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCH---
Q 010889 289 GQFLKNGFLLMVRVIAVTFCVTLAASLAAR--Q-GSTSMAAFQVCLQIWLA-TSLLADGLAVAAQTILASAFVKKDY--- 361 (498)
Q Consensus 289 ~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~--~-g~~~va~~~ia~~i~~~-~~~~~~~i~~a~~p~is~~~g~~~~--- 361 (498)
+++++.....+.+++.-.+.+.-|..++.. + +.++-|.|.+++++.++ .-++...+=.+.....++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 789999999999999999999999999988 6 78999999999999987 5556777888888888888765433
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhcc
Q 010889 362 ------DKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGAS 435 (498)
Q Consensus 362 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 435 (498)
++..+.....+++...+++.+...-....+.+++++.++.-....+...+++++...++.+++.+.....++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 44556666777777777766666666666777777754322222458899999999999999999999999999
Q ss_pred chhhHHHH---HHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010889 436 DFAYSAYS---MVSVAVVSILCLFILSS-SHGYVGIWVALSMYMSLRAIAGFLRIGSGS 490 (498)
Q Consensus 436 ~~~~~~~~---~~~~~~i~i~l~~~l~~-~~G~~G~~ia~~~~~~i~~~~~~~~~~~~~ 490 (498)
+.+..... .++..++.+..++++.. .+|..|..+|.++.+..+.+.+.++.++..
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~ 471 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRRYF 471 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777663 44556777788899988 599999999999999999999888776533
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.57 E-value=8.5e-06 Score=69.98 Aligned_cols=82 Identities=33% Similarity=0.537 Sum_probs=75.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010889 195 LTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIE 274 (498)
Q Consensus 195 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~is~~i~~l~~~~~~~~ 274 (498)
+++++++.++..+.......+++.||+|..+.....+.++|++++++++ +++|..|+++++.+++.+...+..+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999997 77999999999999999999988888877
Q ss_pred hccc
Q 010889 275 EVDL 278 (498)
Q Consensus 275 ~~~~ 278 (498)
+.+.
T Consensus 80 ~~~~ 83 (146)
T PF14667_consen 80 KIGI 83 (146)
T ss_pred HhCC
Confidence 7643
No 38
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.51 E-value=0.00018 Score=67.53 Aligned_cols=266 Identities=14% Similarity=0.123 Sum_probs=154.2
Q ss_pred cccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-c-Ch-hhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhH
Q 010889 17 FRKDEIGLEIAQIALPATLALAADPIASLVDTAFIGQ-I-GP-VELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDT 93 (498)
Q Consensus 17 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-l-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (498)
++......++.++-.|+.+++.+..+...+-+.-++| . .+ +.+|+++++..+.-.+.+. +...-
T Consensus 4 ~~~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp----~~~~~--------- 70 (345)
T PF07260_consen 4 FPSLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASP----LSMFH--------- 70 (345)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhCh----hhhhH---------
Confidence 3445567899999999999999988888887777876 2 33 4599999998876543211 11100
Q ss_pred HhhhhhhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhh
Q 010889 94 IKRLTVEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQA-FFVIAYA 172 (498)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 172 (498)
-++-.+++++++ .++ ..........+.+.+.. +..-.+.
T Consensus 71 ------------------------------------~igl~~V~s~rs-rr~---~vl~~~vag~v~avi~~LIa~TpLG 110 (345)
T PF07260_consen 71 ------------------------------------HIGLVFVNSKRS-RRK---AVLCMAVAGAVAAVIHLLIAWTPLG 110 (345)
T ss_pred ------------------------------------HHHHHHhcchhh-hHH---HHHHHHHHHHHHHHHHHHHHhCchH
Confidence 011122233222 222 22222222222222211 1122333
Q ss_pred HHHH-hhcccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh---hcc
Q 010889 173 KPIL-NYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL---FNW 248 (498)
Q Consensus 173 ~~i~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~---~~~ 248 (498)
..++ +.++.+++ +.+.+...+.++.+.-++..+....+|++--.+++......++...+..+++..+++.. +.-
T Consensus 111 ~~li~~lhgVs~~--va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~ 188 (345)
T PF07260_consen 111 NYLINDLHGVSPS--VAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQD 188 (345)
T ss_pred HHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccc
Confidence 4444 44454444 78888888888888888899999999998877777777777776666665555455532 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH----HHhcccC-CC-CccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-h-C
Q 010889 249 GVSGAAIAHVISQYLISLILLWKL----IEEVDLL-PP-SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAAR-Q-G 320 (498)
Q Consensus 249 gv~Gaa~a~~is~~i~~l~~~~~~----~~~~~~~-~~-~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~-~-g 320 (498)
+..--..+...+..+-+-+...-+ +.+++.. +. +-++...++++++.+|.+.......+.-.+.+.++++ + |
T Consensus 189 pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~g 268 (345)
T PF07260_consen 189 PLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSG 268 (345)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 111111222222222221111112 2222211 11 1222357899999999999999999999999999998 4 4
Q ss_pred ----hHHHHHHHHHHHHHHHH
Q 010889 321 ----STSMAAFQVCLQIWLAT 337 (498)
Q Consensus 321 ----~~~va~~~ia~~i~~~~ 337 (498)
+++++..++.+...-..
T Consensus 269 s~a~~~avavl~~~ypvgh~~ 289 (345)
T PF07260_consen 269 SQAATEAVAVLTATYPVGHMP 289 (345)
T ss_pred cccchhhhhhhccccCCCcCc
Confidence 47777766666544433
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.45 E-value=1.2e-06 Score=75.42 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=77.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010889 410 GIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSG 489 (498)
Q Consensus 410 ~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~~~ 489 (498)
++++++++.++.+.....++++++.||+|..++..+.+.+++++++++++|.+|..|+++++.+++.+...+..+..+|+
T Consensus 1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred CC
Q 010889 490 SG 491 (498)
Q Consensus 490 ~~ 491 (498)
.+
T Consensus 81 ~~ 82 (146)
T PF14667_consen 81 IG 82 (146)
T ss_pred hC
Confidence 54
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.41 E-value=0.00018 Score=68.39 Aligned_cols=186 Identities=22% Similarity=0.281 Sum_probs=122.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 010889 292 LKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLL-ADGLAVAAQTILASAFVKKDYDKATTIAS 369 (498)
Q Consensus 292 l~~~~p~~l~~~~~~i~~~~~~~~~~~~-g~~~va~~~ia~~i~~~~~~~-~~~i~~a~~p~is~~~g~~~~~~~~~~~~ 369 (498)
+|-+......+........+...++.+. |+++.+.|+....+.++...+ ..|+.++..-..++...+ .++.++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 4556667777778877777777777776 999999999999999887766 678888887777776433 233344443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q 010889 370 HVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAV 449 (498)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 449 (498)
.......+.++... .... +...+. +++. ............++.........++++.++.+......+...+
T Consensus 80 ~~~~~~~~~~~i~~-~~~~----~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLIFL-LILL----IASFFG-NPSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHH-HHHH----HHHHcC-CchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332222222 2222 222333 3331 1122222222225788888899999999999998888888877
Q ss_pred HHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHc
Q 010889 450 VSILCLFILSSS-HGYVGIWVALSMYMSLRAIAGFLRIGS 488 (498)
Q Consensus 450 i~i~l~~~l~~~-~G~~G~~ia~~~~~~i~~~~~~~~~~~ 488 (498)
....+.+.+... .++.+...+..++..+...+..+..+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666666543 348889999999998888877777664
No 41
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.25 E-value=4.7e-05 Score=79.25 Aligned_cols=215 Identities=11% Similarity=0.043 Sum_probs=166.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc--c-ChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 22 IGLEIAQIALPATLALAADPIASLVDTAFIGQ--I-GPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
.-++.++.+...+.+++.-.+.+--|++++.. + +.++.|.|+++.++-+++.++...|+.-..-...++..
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l------ 324 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLL------ 324 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHh------
Confidence 45889999999999999999999999999999 4 67899999999999999999999998776655544321
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccch--hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNIS--AKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPIL 176 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 176 (498)
++.- .++++++.++..+.+...+.+...+++++.+.....++.++
T Consensus 325 ---------------------------------~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL 371 (549)
T PF04506_consen 325 ---------------------------------SRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLL 371 (549)
T ss_pred ---------------------------------cccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHH
Confidence 1100 11123334555557888888888899888888888888899
Q ss_pred hhcccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhH---HHHHHHHHHHHHhhHHHHhhhcchhhhH
Q 010889 177 NYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPF---YATILGDLANVILDPIFIFLFNWGVSGA 253 (498)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~---~~~~~~~i~~i~l~~lli~~~~~gv~Ga 253 (498)
+++++++= ..+.+.+.++..+..+|+.+++.+..++.++....+-.. .......++-+..+++++.. ++|..|.
T Consensus 372 ~~~~g~~w--~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~Gl 448 (549)
T PF04506_consen 372 RLLGGSRW--SSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGL 448 (549)
T ss_pred HHHhhhcc--cCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchH
Confidence 88876542 235568889999999999999999999999887755443 33444445556677777754 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 010889 254 AIAHVISQYLISLILLWKLIEEVDL 278 (498)
Q Consensus 254 a~a~~is~~i~~l~~~~~~~~~~~~ 278 (498)
.+|+++...+.......+.++..+.
T Consensus 449 I~AN~iNM~lRI~ys~~fI~~~~~~ 473 (549)
T PF04506_consen 449 ILANCINMSLRIIYSLRFIRRYFRN 473 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888776543
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.23 E-value=0.00065 Score=63.81 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=109.7
Q ss_pred HHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 309 VTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLA-DGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNL 386 (498)
Q Consensus 309 ~~~~~~~~~~~-g~~~va~~~ia~~i~~~~~~~~-~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (498)
+.+...++.+. |+++.+.|+....+.++...+. .++.+... + ..++|+++.++..+.......+.+.......
T Consensus 4 ~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PF13440_consen 4 NFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAILA 78 (251)
T ss_pred HHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666 9999999999999988877763 44433322 2 2346667777766655544444443333322
Q ss_pred HHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH-hccchH
Q 010889 387 LVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILS-SSHGYV 465 (498)
Q Consensus 387 ~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~-~~~G~~ 465 (498)
. .+...+ ++++ ...++....+..++..........+++.+|.+..........++...+...+. ...++.
T Consensus 79 ~----~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (251)
T PF13440_consen 79 I----LIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLW 149 (251)
T ss_pred H----HHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2 222233 4443 34566777778888899999999999999999988877777666643333332 234888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Q 010889 466 GIWVALSMYMSLRAIAGFLRIGSG 489 (498)
Q Consensus 466 G~~ia~~~~~~i~~~~~~~~~~~~ 489 (498)
+..++..++.++..+......+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~ 173 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLRRK 173 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 889999999888877766655433
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=0.00095 Score=65.59 Aligned_cols=210 Identities=13% Similarity=0.083 Sum_probs=159.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc---cChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 22 IGLEIAQIALPATLALAADPIASLVDTAFIGQ---IGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~---lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
..++..+.....+-+.+.-++.+==|.+++.. ++-.+.|.|.+..+.-+++.++..-|+.-......
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~F---------- 306 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYF---------- 306 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHH----------
Confidence 44677888888888889999999999999985 45667888888888878888887777755544443
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
+|-..++++|+.++..++....+.+...+|+++.......++.++.+
T Consensus 307 ---------------------------------A~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~l 353 (530)
T KOG2864|consen 307 ---------------------------------ARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLL 353 (530)
T ss_pred ---------------------------------HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHH
Confidence 33445666777777777899999999999988888888888899998
Q ss_pred cccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchh---HHHHHHHHHHHHHhhHHHHhhhcchhhhHHH
Q 010889 179 MGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTP---FYATILGDLANVILDPIFIFLFNWGVSGAAI 255 (498)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~---~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~ 255 (498)
.++++= ....+...+++.+..+|+.+++.+..++..+....+.. -....+..+..++.+++++-. +|..|..+
T Consensus 354 ygG~kw--ss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIl 429 (530)
T KOG2864|consen 354 YGGSKW--SSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLIL 429 (530)
T ss_pred HcCccc--cCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHH
Confidence 887653 23456688999999999999999999999887653322 233344455666778888744 66699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 010889 256 AHVISQYLISLILLWKLIEEVDL 278 (498)
Q Consensus 256 a~~is~~i~~l~~~~~~~~~~~~ 278 (498)
|.++...+..+....+.++..+.
T Consensus 430 ANiiNm~lRIlys~~fI~~~yr~ 452 (530)
T KOG2864|consen 430 ANIINMSLRILYSLRFIRHYYRD 452 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988888888777777665544
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.55 E-value=0.05 Score=51.54 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=112.6
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh--C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Q 010889 285 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ--G-STSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDY 361 (498)
Q Consensus 285 ~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~--g-~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~ 361 (498)
....+++.++-.|..+++....+.-.+.+.-+++- . .+.+|+|+++..+.-++..+...+-++....+ +++.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHh-----cchh
Confidence 34568899999999999999999999988888763 3 36699999999998888777776666544433 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhhh-ccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhcc
Q 010889 362 DKATTIASHVLQLSVVLGLVLTVN-----LLVGLPFS-SRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGAS 435 (498)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 435 (498)
++ ++.+. +....+...+.+ .--++..+ ..++.-||++.+.+...+.++.+..++++.....++++.-.+
T Consensus 82 sr-r~~vl----~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r 156 (345)
T PF07260_consen 82 SR-RKAVL----CMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHR 156 (345)
T ss_pred hh-HHHHH----HHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 32 22222 222222222222 11222222 356677899999999999999999999999999999998667
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 010889 436 DFAYSAYSMVSVAVVSILCLFIL 458 (498)
Q Consensus 436 ~~~~~~~~~~~~~~i~i~l~~~l 458 (498)
++......++...+..+.....+
T Consensus 157 ~s~iV~~aSI~~v~~qvV~v~~l 179 (345)
T PF07260_consen 157 HSWIVGSASIADVIAQVVLVAIL 179 (345)
T ss_pred ceeEeehHHHHHHHHHHHHHHHH
Confidence 77776666666555444444333
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.36 E-value=0.16 Score=49.20 Aligned_cols=272 Identities=10% Similarity=-0.001 Sum_probs=160.4
Q ss_pred HHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010889 198 RSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVD 277 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~gv~Gaa~a~~is~~i~~l~~~~~~~~~~~ 277 (498)
.+..............++.+.+|.|.....-.++.++..++..++- ..+..|..++..++..+.......+..|..+
T Consensus 137 ~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk 213 (467)
T COG4267 137 ACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFK 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 3334455566667788899999999999999999999988887764 4689999999999998888777666655432
Q ss_pred c-CCCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHH------HHHHHHHHHHHHHHH-----HH
Q 010889 278 L-LPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQG--STSMAA------FQVCLQIWLATSLLA-----DG 343 (498)
Q Consensus 278 ~-~~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g--~~~va~------~~ia~~i~~~~~~~~-----~~ 343 (498)
- .+..++- -...+--...++.....++.-++|+.+--.-+ .+..+. |.++--...+...|. ..
T Consensus 214 ~~~~i~FdF---L~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 214 SSRRIGFDF---LLYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred cccccceeh---hhhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 2 1222222 22333445556777777788888876643332 221111 222222111111111 11
Q ss_pred HHHHHHHHHHHHhhc-----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHH
Q 010889 344 LAVAAQTILASAFVK-----------KDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIP 412 (498)
Q Consensus 344 i~~a~~p~is~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 412 (498)
+-+...+.--+.+.+ ++.+++....++.+.-.+-+=...++.+.++++.+..++.-|+. ..+.++
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF~ 366 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLFY 366 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHHH
Confidence 122222222222211 22334444455555555555566777888999999998875553 455666
Q ss_pred HHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH---hccchHHHHHHHHHHHHHHH
Q 010889 413 FIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILS---SSHGYVGIWVALSMYMSLRA 479 (498)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~---~~~G~~G~~ia~~~~~~i~~ 479 (498)
+-.++.-++.....+..+..-.++-+..+..+..-...|..++++.. |.+--.|..+|..+...+..
T Consensus 367 vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~ 436 (467)
T COG4267 367 VDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAF 436 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHH
Confidence 66666666666556666666666666666666666666666666653 45555566666655554443
No 46
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=87.79 E-value=9.6 Score=32.68 Aligned_cols=64 Identities=5% Similarity=0.017 Sum_probs=34.8
Q ss_pred HHHHHhhhhh------hhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccC
Q 010889 118 EELISEVECK------TMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVN 182 (498)
Q Consensus 118 ~~~~~~g~~~------~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~ 182 (498)
++++|.|+.. .+.+||.+|.+++=..+. ..-...--.++......+++....|.+.+.+....+
T Consensus 16 RK~LGVGge~ddG~v~rSKISQlLGne~k~~vr~-P~GLr~Wq~~sa~~f~~~~~m~L~FP~~~~~~vf~~ 85 (179)
T PF14936_consen 16 RKILGVGGEDDDGEVHRSKISQLLGNEIKFAVRE-PRGLRLWQFLSAVYFTLVALMALVFPDQLYDHVFEE 85 (179)
T ss_pred hhhccccccCCCCcCcHHHHHHHhcccceeeecC-CCchhHHHHHHHHHHHHHHHHHHHccHHHHHhhccc
Confidence 5667777444 677999998655433322 112222222333333445556677777777766533
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=68.37 E-value=1.3e+02 Score=29.90 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHH
Q 010889 341 ADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPI 420 (498)
Q Consensus 341 ~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~ 420 (498)
+.++.....-.+|+..=++|.++......-........+..+.. ++-...+|.+ ..+=...+.....
T Consensus 77 Tgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~--------~vf~~~~~~s-----i~yk~l~~~~FV~ 143 (467)
T COG4267 77 TGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL--------IVFFVNNQYS-----IVYKILACALFVG 143 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH--------HhhhhcCchh-----HHHHHHHHHHHHH
Confidence 34444445555666666666666655554333333333322221 1111223332 2222233444455
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q 010889 421 NALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGF 483 (498)
Q Consensus 421 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~ 483 (498)
.+...+....+.+++|.|....+..++....+.+..++- +.++.|..++..++..+......
T Consensus 144 m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~-~~~ie~lLL~~~IGi~~i~~l~~ 205 (467)
T COG4267 144 MSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL-KSPIEGLLLTLDIGIFIILFLLN 205 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhHHHHHHHHH
Confidence 666778888999999999999999999988877766554 55889999999888876555443
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=41.31 E-value=1.5e+02 Score=22.26 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Q 010889 347 AAQTILASAFVKKDYDKATTIASHVLQLSVVLGLV 381 (498)
Q Consensus 347 a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (498)
.....+-+.+.+||++++++.-++..++..+-.+.
T Consensus 39 ~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 39 VYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred eechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34456777888999999999998887776554444
No 49
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=39.72 E-value=37 Score=32.01 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=20.0
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCCcC
Q 010889 464 YVGIWV-ALSMYMSLRAIAGFLRIGSGSGPWSFL 496 (498)
Q Consensus 464 ~~G~~i-a~~~~~~i~~~~~~~~~~~~~~~w~~~ 496 (498)
..|++. ...+-.++.-++..|++|||+..||+-
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 345433 333334444556678888888899864
No 50
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=37.46 E-value=3.4e+02 Score=25.11 Aligned_cols=43 Identities=5% Similarity=-0.028 Sum_probs=34.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhh
Q 010889 22 IGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVELAAVGV 64 (498)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~~~~~~ 64 (498)
..+.+-+...|...+..+..+...+....+++ +|-++--..+.
T Consensus 85 q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl 128 (232)
T PRK04288 85 KRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM 128 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35678888999999999999999999999999 77555433333
No 51
>PTZ00370 STEVOR; Provisional
Probab=36.95 E-value=35 Score=32.17 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=19.4
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCCc
Q 010889 464 YVGIWV-ALSMYMSLRAIAGFLRIGSGSGPWSF 495 (498)
Q Consensus 464 ~~G~~i-a~~~~~~i~~~~~~~~~~~~~~~w~~ 495 (498)
..|++. ...+-.++.-++..|++|||+..||+
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 345433 33333444455667888888889985
No 52
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=29.78 E-value=5.8e+02 Score=25.55 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 010889 360 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSR 395 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 395 (498)
++++.++..+++...+.+......+++.+..-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988887777777765
No 53
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=27.20 E-value=5e+02 Score=23.92 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhh
Q 010889 21 EIGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVEL 59 (498)
Q Consensus 21 ~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~ 59 (498)
+..+.+-+...|...+.....+.+.+....+++ +|-+.-
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~ 117 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE 117 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 345678888899999999999999999999999 775443
No 54
>COG0679 Predicted permeases [General function prediction only]
Probab=26.72 E-value=5.9e+02 Score=24.61 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010889 313 ASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPF 392 (498)
Q Consensus 313 ~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
......+|++.++...+...+.+....... .-...+.- +++.++.++..++..+--.+++...+..+-...-.
T Consensus 114 pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g------~~~l~~~~-~~~~~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~ 186 (311)
T COG0679 114 PVALSLFGEKGLAYAVIFLIIGLFLMFTLG------VILLARSG-GGTNKSLLSVLKKLLTNPLIIALILGLLLNLLGIS 186 (311)
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHH------HHHHHHhc-CCchhHHHHHHHHHHhCcHHHHHHHHHHHHHcCCC
Confidence 355566698888877776665554332211 12223332 22225677777777777777777777766655533
Q ss_pred hcc
Q 010889 393 SSR 395 (498)
Q Consensus 393 i~~ 395 (498)
+..
T Consensus 187 lP~ 189 (311)
T COG0679 187 LPA 189 (311)
T ss_pred CcH
Confidence 333
No 55
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=26.38 E-value=3.7e+02 Score=22.15 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=32.4
Q ss_pred CCCccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Q 010889 280 PPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQV 329 (498)
Q Consensus 280 ~~~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~i 329 (498)
+-+.++-+.+++-+.|--.++..........+...+++..-++.++....
T Consensus 18 ~GplDE~r~~ei~rign~a~i~l~~~~l~~~li~l~l~~~~~~~~a~~~~ 67 (129)
T PF11683_consen 18 QGPLDEYRRQEINRIGNNAFIILFYYSLLLNLISLLLASRYPEEVAFGYP 67 (129)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44566666677888887777777777766666666666554554444433
No 56
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=26.23 E-value=6.7e+02 Score=25.10 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=25.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 010889 139 EARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILN 177 (498)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 177 (498)
++++.++ +++.+...+.....+..++.....-|+..
T Consensus 89 ~e~~~~~---y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQ---YFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555 78888888888888877776666666654
No 57
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=24.51 E-value=4.9e+02 Score=26.61 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Q 010889 295 GFLLMVRVIAVTFCVTLAASLAARQ-G-STSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVL 372 (498)
Q Consensus 295 ~~p~~l~~~~~~i~~~~~~~~~~~~-g-~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~ 372 (498)
+.|..++.+..-+.-..-.++.+.. | +.+++ -+...+..|++......++..+|+.+..+-||...-.+
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~---------~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALA---------LLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhh---------hhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 6677776666655555555555555 3 33333 34556788999999999999999999998888886554
Q ss_pred HH
Q 010889 373 QL 374 (498)
Q Consensus 373 ~~ 374 (498)
..
T Consensus 450 Af 451 (510)
T KOG2468|consen 450 AF 451 (510)
T ss_pred HH
Confidence 33
No 58
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.40 E-value=1.3e+02 Score=24.64 Aligned_cols=12 Identities=0% Similarity=-0.020 Sum_probs=4.2
Q ss_pred HHHHHHHHhccc
Q 010889 267 ILLWKLIEEVDL 278 (498)
Q Consensus 267 ~~~~~~~~~~~~ 278 (498)
+..+.++|++++
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 333444444443
No 59
>PRK10711 hypothetical protein; Provisional
Probab=22.54 E-value=6.2e+02 Score=23.40 Aligned_cols=38 Identities=8% Similarity=-0.029 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-cChhhh
Q 010889 22 IGLEIAQIALPATLALAADPIASLVDTAFIGQ-IGPVEL 59 (498)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~-lg~~~~ 59 (498)
..+.+-+...|...+..+..+...+....+++ +|-++-
T Consensus 80 q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~ 118 (231)
T PRK10711 80 QLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE 118 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 34667788889999999999999999999999 775443
No 60
>PF13347 MFS_2: MFS/sugar transport protein
Probab=22.05 E-value=8.1e+02 Score=24.56 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=16.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhChHH
Q 010889 293 KNGFLLMVRVIAVTFCVTLAASLAARQGSTS 323 (498)
Q Consensus 293 ~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~ 323 (498)
-.+.......+...+...+...++..+|.++
T Consensus 141 l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~ 171 (428)
T PF13347_consen 141 LSSWRMIFSMIGSLLASFLAPILVSWFGGGD 171 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCc
Confidence 3344445555555455566666666665443
No 61
>PRK03612 spermidine synthase; Provisional
Probab=20.87 E-value=9.9e+02 Score=25.13 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 441 AYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 441 ~~~~~~~~~i~i~l~~~l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
..+++.+.+-.+...+++.|.+|..+..+....-++..++...++.+
T Consensus 152 ~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~~ 198 (521)
T PRK03612 152 AADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLFR 198 (521)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555556666777889999999988777666666666665555555
Done!