Query 010889
Match_columns 498
No_of_seqs 202 out of 1926
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.3E-46 7.9E-51 385.4 38.4 423 19-491 7-448 (460)
2 3mkt_A Multi antimicrobial ext 99.8 6.6E-18 2.2E-22 173.0 17.7 203 286-489 9-217 (460)
3 2k1k_A Ephrin type-A receptor 26.3 96 0.0033 18.6 3.8 24 464-487 13-36 (38)
4 4hkr_A Calcium release-activat 26.1 3.1E+02 0.011 23.5 10.4 79 320-399 56-142 (214)
5 1pw4_A Glycerol-3-phosphate tr 22.8 4.8E+02 0.016 24.5 29.6 26 459-484 407-432 (451)
6 2jwa_A Receptor tyrosine-prote 15.7 2.2E+02 0.0077 17.7 4.0 13 478-490 27-39 (44)
7 4aps_A DI-OR tripeptide H+ sym 9.9 1.1E+03 0.036 22.3 23.0 10 350-359 340-349 (491)
8 3o7q_A L-fucose-proton symport 8.1 1.2E+03 0.04 21.4 29.5 34 22-55 24-57 (438)
9 1nkz_B Light-harvesting protei 7.0 4.7E+02 0.016 16.0 3.7 38 356-393 3-40 (41)
10 2gfp_A EMRD, multidrug resista 6.4 1.3E+03 0.045 20.6 15.5 236 106-358 25-264 (375)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.3e-46 Score=385.38 Aligned_cols=423 Identities=19% Similarity=0.219 Sum_probs=379.7
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhhHHHHHHHHhhccchheeehhhhhhhhHHhhhh
Q 010889 19 KDEIGLEIAQIALPATLALAADPIASLVDTAFIGQIGPVELAAVGVSIAIFNQVSRITIFPLVSVTTSLVAEEDTIKRLT 98 (498)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (498)
.++..|++++.++|.+++++.+.+++.+|+.+++|+|++++|+++++.++......+.
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~---------------------- 64 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG---------------------- 64 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 4578899999999999999999999999999999999999999999987754322111
Q ss_pred hhhhhHHHhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 010889 99 VEAHEEEKLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 178 (498)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 178 (498)
.|++.+.+..++|++|++|+++.++ .+++++.+...++++..++ +.+.+++..+
T Consensus 65 ----------------------~g~~~~~~~~is~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 118 (460)
T 3mkt_A 65 ----------------------VGLLMALVPVVAQLNGAGRQHKIPF---EVHQGLILALLVSVPIIAV-LFQTQFIIRF 118 (460)
T ss_dssp ----------------------HHHHHHHGGGCTTTTSSSSTTTHHH---HHHHHHHHHHHHHHHHHHH-HHHHHTTCSS
T ss_pred ----------------------HHHHHHHHHHHHHHHcCCChhHHHH---HHHHHHHHHHHHHHHHHHH-HHhHHHHHHH
Confidence 1333446778999999999999888 7889999999998887665 7788999988
Q ss_pred cccCCCccchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhh----hcchhhhHH
Q 010889 179 MGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGAA 254 (498)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~----~~~gv~Gaa 254 (498)
++.+++ ..+.+..|+++.+++.++..+....++.+|+.||++.++..++++.++|+++++++++. |++|+.|++
T Consensus 119 ~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a 196 (460)
T 3mkt_A 119 MDVEEA--MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCG 196 (460)
T ss_dssp CSSTTH--HHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHH
T ss_pred hCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHH
Confidence 865554 78889999999999999999999999999999999999999999999999999999975 479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCC-------CccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Q 010889 255 IAHVISQYLISLILLWKLIEEVDLLPP-------SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAF 327 (498)
Q Consensus 255 ~a~~is~~i~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~ 327 (498)
+++.+++.+..++..++++++++..+. +.++..+|++++.+.|.+++.+...+...+++.+++++|++++++|
T Consensus 197 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~ 276 (460)
T 3mkt_A 197 VATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAH 276 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 999999999999888887765443221 3344567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHH
Q 010889 328 QVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLI 407 (498)
Q Consensus 328 ~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 407 (498)
+++.++.++...+..+++++..|.+++++|++|.|++|+..++..++....+++.++++.++++++.++|.+|+++.+.+
T Consensus 277 ~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 356 (460)
T 3mkt_A 277 QVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALA 356 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HHHHHHHHHHHhc-------cchHHHHHHHHHHHHHHH
Q 010889 408 GVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVA-VVSILCLFILSSS-------HGYVGIWVALSMYMSLRA 479 (498)
Q Consensus 408 ~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~i~i~l~~~l~~~-------~G~~G~~ia~~~~~~i~~ 479 (498)
..++++++++.++++.+.+..+.+++.||+|.+++..+... ++++|+++++.+. +|+.|+|+++.+++.+..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~ 436 (460)
T 3mkt_A 357 MQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAA 436 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877765 9999999999987 999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 010889 480 IAGFLRIGSGSG 491 (498)
Q Consensus 480 ~~~~~~~~~~~~ 491 (498)
++..++++|+.+
T Consensus 437 ~~~~~~~~~~~~ 448 (460)
T 3mkt_A 437 LMLGQRLYWLQK 448 (460)
T ss_dssp HHHHSSSSSSCC
T ss_pred HHHHHHHHHHHH
Confidence 988887775443
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.77 E-value=6.6e-18 Score=173.02 Aligned_cols=203 Identities=16% Similarity=0.110 Sum_probs=189.7
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Q 010889 286 LKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKAT 365 (498)
Q Consensus 286 ~~~~~~l~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~g~~~~~~~~ 365 (498)
...|++++.++|.+++++...+...+|+.+++++|++++++|+.+.++..+...+..+++++..|.+++.+|++|+++.+
T Consensus 9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~ 88 (460)
T 3mkt_A 9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKIP 88 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence 45789999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHhhccchhhHHHHHH
Q 010889 366 TIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMV 445 (498)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 445 (498)
+..++...+....+++.+++ ..+.+++..++..|++..+.+..++++++++.++........+.+++.||++.+....+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (460)
T 3mkt_A 89 FEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF 167 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99999999999999998765 77889999999888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh------ccchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 010889 446 SVAVVSILCLFILSS------SHGYVGIWVALSMYMSLRAIAGFLRIGSG 489 (498)
Q Consensus 446 ~~~~i~i~l~~~l~~------~~G~~G~~ia~~~~~~i~~~~~~~~~~~~ 489 (498)
.+.++++++++++++ .+|+.|+++++.+++.+..++..+.++++
T Consensus 168 ~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999985 58999999999999999998887776643
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.35 E-value=96 Score=18.65 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 464 YVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 464 ~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
+.|+.++.+.+..+...+.+++++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 345666665555544444444443
No 4
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=26.14 E-value=3.1e+02 Score=23.47 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010889 320 GSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAF--------VKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLP 391 (498)
Q Consensus 320 g~~~va~~~ia~~i~~~~~~~~~~i~~a~~p~is~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
.+.-+.+|++...+.-.+.++..-+++-..|.+-..- .+.-.+|.+..+...-.++..+++++.+.-+...-
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455788888888888888888888888888765432 23345788888887777777777666555444443
Q ss_pred hhcccccc
Q 010889 392 FSSRLFTK 399 (498)
Q Consensus 392 ~i~~l~~~ 399 (498)
++.++..
T Consensus 136 -WVKF~~~ 142 (214)
T 4hkr_A 136 -WVKFYDL 142 (214)
T ss_dssp -HHHHTTT
T ss_pred -eEEeecC
Confidence 3455543
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=22.85 E-value=4.8e+02 Score=24.47 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=14.5
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHH
Q 010889 459 SSSHGYVGIWVALSMYMSLRAIAGFL 484 (498)
Q Consensus 459 ~~~~G~~G~~ia~~~~~~i~~~~~~~ 484 (498)
....|....++...+..++..+...+
T Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 407 VDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 44567766666555555555544443
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=15.66 E-value=2.2e+02 Score=17.71 Aligned_cols=13 Identities=8% Similarity=-0.161 Sum_probs=5.6
Q ss_pred HHHHHHHHHHcCC
Q 010889 478 RAIAGFLRIGSGS 490 (498)
Q Consensus 478 ~~~~~~~~~~~~~ 490 (498)
..+....++|+++
T Consensus 27 ~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 27 LGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHhheehhh
Confidence 3333344555443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=9.85 E-value=1.1e+03 Score=22.31 Aligned_cols=10 Identities=30% Similarity=0.302 Sum_probs=4.7
Q ss_pred HHHHHHhhcc
Q 010889 350 TILASAFVKK 359 (498)
Q Consensus 350 p~is~~~g~~ 359 (498)
..+.+.++++
T Consensus 340 ~~l~~r~~~r 349 (491)
T 4aps_A 340 AWLWTAWKKN 349 (491)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHhcc
Confidence 3344555544
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=8.06 E-value=1.2e+03 Score=21.44 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccC
Q 010889 22 IGLEIAQIALPATLALAADPIASLVDTAFIGQIG 55 (498)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~~~~~~~d~~~i~~lg 55 (498)
.++.+.....-.+............-..+..++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 57 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFT 57 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 3344444444444444443444443333333343
No 9
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=7.04 E-value=4.7e+02 Score=15.96 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010889 356 FVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFS 393 (498)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 393 (498)
+..++-++.++.+.+++.....+.+..=++.+...|++
T Consensus 3 LT~~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 3 LTAEQSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=6.44 E-value=1.3e+03 Score=20.56 Aligned_cols=236 Identities=6% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HhhhcccchhHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccCCCc
Q 010889 106 KLEKGFATSEEMEELISEVECKTMTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDS 185 (498)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~ 185 (498)
...+..+.++....++-.-......+++-..-.-.|+..+ +...........+..+...+.+....++
T Consensus 25 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~------r~~~~~~~~~~~~~~~~~~~~~~~~~l~------ 92 (375)
T 2gfp_A 25 DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR------RPVILVGMSIFMLATLVAVTTSSLTVLI------ 92 (375)
T ss_dssp HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------chhHHHHHHHHHHHHHHHHHhccHHHHH------
Q ss_pred cchhhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhHHHHhhhcc-hhhhHHHHHHHHHHHH
Q 010889 186 PMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNW-GVSGAAIAHVISQYLI 264 (498)
Q Consensus 186 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~lli~~~~~-gv~Gaa~a~~is~~i~ 264 (498)
....+.-...+................+++.+.....+....+-..+...+.-...+. |.....+...+...+.
T Consensus 93 -----~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 93 -----AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcccCCC-CccchhhHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH
Q 010889 265 SLILLWKLIEEVDLLPP-SSKDLKFGQFL--KNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLA 341 (498)
Q Consensus 265 ~l~~~~~~~~~~~~~~~-~~~~~~~~~~l--~~~~p~~l~~~~~~i~~~~~~~~~~~~g~~~va~~~ia~~i~~~~~~~~ 341 (498)
.+.......++.+..+. +.++..+++.+ +.-....+..................+-.+..+.-............+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 247 (375)
T 2gfp_A 168 TFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPA 247 (375)
T ss_dssp HCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhc
Q 010889 342 DGLAVAAQTILASAFVK 358 (498)
Q Consensus 342 ~~i~~a~~p~is~~~g~ 358 (498)
..++....+.+++..++
T Consensus 248 ~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 248 AFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Done!