Query 010889
Match_columns 498
No_of_seqs 202 out of 1926
Neff 9.6
Searched_HMMs 13730
Date Mon Mar 25 16:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010889.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010889hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 15.1 3.2E+02 0.023 23.1 29.7 30 458-487 403-432 (447)
2 d1nkzb_ f.3.1.1 (B:) Light-har 14.7 1E+02 0.0075 17.2 4.0 33 360-392 7-39 (41)
3 d2iuba2 f.17.3.1 (A:286-349) M 10.4 1.7E+02 0.013 17.9 4.2 19 440-458 5-23 (64)
4 d1ijdb_ f.3.1.1 (B:) Light-har 7.4 2E+02 0.015 15.8 3.7 32 359-390 7-38 (40)
5 d1lghb_ f.3.1.1 (B:) Light-har 5.9 2.7E+02 0.019 15.8 3.4 32 359-390 9-40 (43)
6 d1jo5a_ f.3.1.1 (A:) Light-har 3.4 4.1E+02 0.03 15.3 2.6 33 359-391 14-46 (48)
7 d2qtia1 a.284.1.1 (A:8-72) Unc 3.3 4.3E+02 0.031 16.4 2.8 34 119-155 26-59 (65)
8 d3dhwa1 f.58.1.1 (A:6-208) D-m 3.2 8.3E+02 0.061 17.8 11.0 48 351-398 116-163 (203)
9 d1iwga8 f.35.1.1 (A:513-566,A: 3.2 9.2E+02 0.067 18.3 12.7 55 254-309 116-172 (222)
10 d2juza1 a.284.1.1 (A:1-72) Unc 3.1 4.6E+02 0.033 16.6 2.8 34 119-155 33-66 (72)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.14 E-value=3.2e+02 Score=23.09 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=17.4
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 010889 458 LSSSHGYVGIWVALSMYMSLRAIAGFLRIG 487 (498)
Q Consensus 458 l~~~~G~~G~~ia~~~~~~i~~~~~~~~~~ 487 (498)
+...+|..+.........++..++......
T Consensus 403 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 403 TVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678777666665555555555544443
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=14.66 E-value=1e+02 Score=17.15 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010889 360 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPF 392 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (498)
+.++.++.+..+.+....+.+..=++.+...+|
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 457889999999998888888776666665554
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=10.39 E-value=1.7e+02 Score=17.88 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010889 440 SAYSMVSVAVVSILCLFIL 458 (498)
Q Consensus 440 ~~~~~~~~~~i~i~l~~~l 458 (498)
.++...+-..+.+|++++-
T Consensus 5 ~mk~lT~it~iflP~t~i~ 23 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3443333344555665544
No 4
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=7.38 E-value=2e+02 Score=15.81 Aligned_cols=32 Identities=3% Similarity=-0.040 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010889 359 KDYDKATTIASHVLQLSVVLGLVLTVNLLVGL 390 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
++-++.++.+..+.+....+.+..=++.+...
T Consensus 7 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 7 EQAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 34578889898898888887776655554443
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.94 E-value=2.7e+02 Score=15.78 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=19.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010889 359 KDYDKATTIASHVLQLSVVLGLVLTVNLLVGL 390 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (498)
++-++.++.+.+++.....+.+..=++...-.
T Consensus 9 ~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wr 40 (43)
T d1lghb_ 9 EEAIAVHDQFKTTFSAFIILAAVAHVLVWVWK 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777777777666666655554444433
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.44 E-value=4.1e+02 Score=15.33 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=19.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010889 359 KDYDKATTIASHVLQLSVVLGLVLTVNLLVGLP 391 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
++-++.++.+..++.....+.++.=++...-.|
T Consensus 14 ~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 14 EQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345677777777776666666555555544443
No 7
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176 {Shewanella oneidensis [TaxId: 70863]}
Probab=3.32 E-value=4.3e+02 Score=16.35 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=23.7
Q ss_pred HHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHH
Q 010889 119 ELISEVECKTMTLNNISAKVEARHERKHIPSASSALV 155 (498)
Q Consensus 119 ~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~ 155 (498)
.|..-||+.+-++.+......++...+ -|..++.
T Consensus 26 SLMvLGN~vTniln~~V~~~qR~~iAe---~Fa~AL~ 59 (65)
T d2qtia1 26 SLMALGNCVTHLLERKVPSESRQAVAE---QFAKALA 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHH---HHHHHHH
Confidence 356778889999888888776666555 3555543
No 8
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=3.24 E-value=8.3e+02 Score=17.83 Aligned_cols=48 Identities=13% Similarity=0.001 Sum_probs=31.3
Q ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 010889 351 ILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFT 398 (498)
Q Consensus 351 ~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 398 (498)
..++..|.++.+..++..-...+-..+.+........+-...+....+
T Consensus 116 Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig 163 (203)
T d3dhwa1 116 EASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 163 (203)
T ss_dssp THHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHcCCchhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888877777666666666665555444433444444
No 9
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.22 E-value=9.2e+02 Score=18.29 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-ccCCCCccchhhHHH-HHhhHHHHHHHHHHHHHH
Q 010889 254 AIAHVISQYLISLILLWKLIEEV-DLLPPSSKDLKFGQF-LKNGFLLMVRVIAVTFCV 309 (498)
Q Consensus 254 a~a~~is~~i~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~p~~l~~~~~~i~~ 309 (498)
+....++-.+.........+++. ++...+.++ ...+- -+.+-|.+.+.+...+.+
T Consensus 116 g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~-Ai~~a~~~~~~~i~~t~ltti~gf 172 (222)
T d1iwga8 116 GLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIE-ATLDAVRMRLRPILMTSLAFILGV 172 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTH-HHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHhccccccccCCHHH-HHHHHHHHHhhhhhhhHHHHHHHH
Confidence 34444444444444443333332 222222222 23333 334556665555554443
No 10
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=3.15 E-value=4.6e+02 Score=16.56 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=23.9
Q ss_pred HHHHhhhhhhhhcccchhhhhhhhhhhhhhhHHHHHH
Q 010889 119 ELISEVECKTMTLNNISAKVEARHERKHIPSASSALV 155 (498)
Q Consensus 119 ~~~~~g~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~ 155 (498)
.|..-||+.+-++.+..+..+++...+ -|..++.
T Consensus 33 SLMvLGN~vTniln~~V~~~qR~~iAe---~Fa~AL~ 66 (72)
T d2juza1 33 SLIALGNMASNLLTTSVPQTQCEALAQ---AFSNSLI 66 (72)
T ss_dssp HHHHHHHHHHHHHTTSSCSTTHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHH---HHHHHHH
Confidence 356778999999988888776666555 4555543
Done!