Query 010890
Match_columns 498
No_of_seqs 191 out of 2039
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1138 Predicted cleavage and 100.0 7.4E-73 1.6E-77 564.5 29.6 449 1-496 1-459 (653)
2 COG1782 Predicted metal-depend 100.0 9.1E-65 2E-69 508.3 27.6 373 1-489 181-581 (637)
3 KOG1136 Predicted cleavage and 100.0 1.9E-63 4E-68 476.3 27.6 345 1-464 4-355 (501)
4 TIGR03675 arCOG00543 arCOG0054 100.0 2E-58 4.4E-63 499.9 37.1 349 1-465 175-533 (630)
5 KOG1137 mRNA cleavage and poly 100.0 5.2E-56 1.1E-60 448.4 21.1 339 2-463 15-360 (668)
6 KOG1135 mRNA cleavage and poly 100.0 3.8E-52 8.2E-57 430.1 31.1 338 2-461 3-354 (764)
7 COG1236 YSH1 Predicted exonucl 100.0 3.7E-51 8E-56 427.0 32.5 334 1-466 1-337 (427)
8 TIGR00649 MG423 conserved hypo 100.0 7.8E-28 1.7E-32 253.1 28.4 302 1-460 1-325 (422)
9 COG0595 mRNA degradation ribon 99.9 4.8E-21 1E-25 203.4 22.8 251 1-380 9-273 (555)
10 PF10996 Beta-Casp: Beta-Casp 99.9 2E-21 4.4E-26 170.3 9.3 117 342-466 1-120 (126)
11 PRK11244 phnP carbon-phosphoru 99.7 6.8E-17 1.5E-21 158.4 12.6 159 1-271 1-184 (250)
12 TIGR02651 RNase_Z ribonuclease 99.7 3.6E-16 7.8E-21 157.3 11.8 172 2-292 1-234 (299)
13 TIGR02649 true_RNase_BN ribonu 99.6 2.9E-15 6.3E-20 151.0 11.4 170 3-291 1-235 (303)
14 PRK02113 putative hydrolase; P 99.6 7.2E-15 1.6E-19 144.2 11.8 165 1-271 1-189 (252)
15 TIGR03307 PhnP phosphonate met 99.6 9.5E-15 2.1E-19 142.2 11.3 145 14-271 26-174 (238)
16 PRK05184 pyrroloquinoline quin 99.6 1.1E-14 2.4E-19 146.5 11.1 124 90-271 76-218 (302)
17 TIGR02108 PQQ_syn_pqqB coenzym 99.5 4.5E-14 9.7E-19 141.7 12.4 158 15-271 38-218 (302)
18 PRK00055 ribonuclease Z; Revie 99.5 3.4E-14 7.4E-19 140.4 7.1 88 1-134 2-100 (270)
19 PRK00685 metal-dependent hydro 99.4 3.5E-12 7.7E-17 123.0 14.3 149 1-271 1-163 (228)
20 PRK04286 hypothetical protein; 99.3 6.2E-12 1.4E-16 126.3 12.3 194 1-272 1-209 (298)
21 PF12706 Lactamase_B_2: Beta-l 99.3 3.1E-12 6.7E-17 119.8 7.7 119 93-271 28-153 (194)
22 PRK02126 ribonuclease Z; Provi 99.3 1.5E-11 3.2E-16 125.2 12.4 73 14-136 15-94 (334)
23 COG1234 ElaC Metal-dependent h 99.3 1.5E-11 3.2E-16 123.1 10.5 87 1-133 2-99 (292)
24 smart00849 Lactamase_B Metallo 99.2 2.7E-11 5.7E-16 111.7 8.0 140 12-251 3-145 (183)
25 PRK11709 putative L-ascorbate 98.9 1.4E-08 3E-13 104.1 14.1 68 200-271 159-248 (355)
26 TIGR02650 RNase_Z_T_toga ribon 98.9 1.3E-08 2.8E-13 99.7 13.1 131 92-293 38-214 (277)
27 PRK11921 metallo-beta-lactamas 98.8 1.1E-08 2.5E-13 106.9 10.5 94 91-249 66-163 (394)
28 PF00753 Lactamase_B: Metallo- 98.8 2.3E-08 5E-13 92.0 8.0 145 12-252 3-149 (194)
29 PRK05452 anaerobic nitric oxid 98.7 5.6E-08 1.2E-12 103.9 10.3 96 91-249 68-167 (479)
30 KOG1361 Predicted hydrolase in 98.7 2.3E-07 4.9E-12 96.6 13.3 171 94-365 112-292 (481)
31 PF13483 Lactamase_B_3: Beta-l 98.5 5.4E-07 1.2E-11 82.3 10.7 67 201-271 61-134 (163)
32 COG1237 Metal-dependent hydrol 98.5 2E-07 4.4E-12 89.3 6.8 87 1-130 1-96 (259)
33 TIGR03413 GSH_gloB hydroxyacyl 98.5 3.9E-07 8.5E-12 89.3 8.3 83 94-250 43-128 (248)
34 TIGR00361 ComEC_Rec2 DNA inter 98.4 1.1E-06 2.3E-11 98.1 11.7 158 2-272 441-606 (662)
35 PLN02469 hydroxyacylglutathion 98.4 2.1E-06 4.7E-11 84.5 10.3 86 94-249 46-136 (258)
36 KOG2121 Predicted metal-depend 98.3 1.1E-07 2.3E-12 102.1 -1.0 61 215-294 594-655 (746)
37 COG0426 FpaA Uncharacterized f 98.3 2.8E-06 6.1E-11 86.7 8.7 131 12-250 33-167 (388)
38 PRK11539 ComEC family competen 98.3 3.5E-06 7.7E-11 95.2 10.3 154 2-272 502-664 (755)
39 PRK10241 hydroxyacylglutathion 98.2 3.9E-06 8.5E-11 82.4 8.3 82 94-250 45-129 (251)
40 PLN02398 hydroxyacylglutathion 98.2 9E-06 2E-10 82.4 10.8 86 93-250 120-208 (329)
41 COG1235 PhnP Metal-dependent h 98.2 3.3E-06 7.1E-11 83.8 6.5 39 92-132 60-100 (269)
42 COG0491 GloB Zn-dependent hydr 98.1 6.5E-06 1.4E-10 79.4 7.9 45 202-251 124-170 (252)
43 COG2220 Predicted Zn-dependent 98.0 7.9E-05 1.7E-09 73.4 13.0 66 201-271 101-179 (258)
44 COG2248 Predicted hydrolase (m 97.9 0.00038 8.2E-09 66.4 15.5 67 204-273 135-209 (304)
45 COG2333 ComEC Predicted hydrol 97.9 7E-05 1.5E-09 74.6 11.1 121 90-272 86-214 (293)
46 PLN02962 hydroxyacylglutathion 97.9 3.1E-05 6.6E-10 75.9 8.2 44 205-250 104-152 (251)
47 PF02112 PDEase_II: cAMP phosp 97.6 0.0017 3.7E-08 65.9 15.2 117 92-252 77-219 (335)
48 KOG0813 Glyoxylase [General fu 96.4 0.0089 1.9E-07 58.4 6.8 88 92-249 49-140 (265)
49 PF14597 Lactamase_B_5: Metall 95.4 0.0084 1.8E-07 54.8 1.9 86 91-249 52-137 (199)
50 PF13691 Lactamase_B_4: tRNase 93.6 0.12 2.7E-06 39.2 4.3 22 15-36 12-34 (63)
51 KOG3592 Microtubule-associated 90.0 0.2 4.4E-06 54.5 2.6 61 4-114 41-103 (934)
52 COG5212 PDE1 Low-affinity cAMP 87.9 1.9 4.2E-05 42.1 7.4 112 93-252 111-235 (356)
53 KOG1137 mRNA cleavage and poly 80.7 4.4 9.6E-05 43.4 6.8 101 1-139 151-259 (668)
54 KOG3798 Predicted Zn-dependent 78.7 15 0.00032 35.8 9.0 68 203-271 181-261 (343)
55 KOG0814 Glyoxylase [General fu 58.3 22 0.00047 32.7 5.2 42 204-249 99-141 (237)
56 KOG4736 Uncharacterized conser 52.3 35 0.00076 34.0 6.0 44 207-252 169-214 (302)
57 KOG0390 DNA repair protein, SN 30.0 2.8E+02 0.0062 31.7 9.4 72 312-385 244-323 (776)
58 COG2927 HolC DNA polymerase II 27.5 1E+02 0.0022 27.5 4.3 36 317-352 17-52 (144)
59 PF04898 Glu_syn_central: Glut 25.4 2.8E+02 0.0062 27.7 7.6 66 313-378 139-213 (287)
60 PRK11188 rrmJ 23S rRNA methylt 24.7 73 0.0016 30.1 3.3 39 317-355 146-184 (209)
61 PRK05728 DNA polymerase III su 21.0 1.8E+02 0.0038 25.8 4.7 37 315-351 15-51 (142)
62 TIGR03675 arCOG00543 arCOG0054 20.8 7.7E+02 0.017 27.6 10.7 55 215-272 173-235 (630)
63 COG0279 GmhA Phosphoheptose is 20.6 6.7E+02 0.015 23.1 12.5 130 317-479 29-160 (176)
No 1
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=7.4e-73 Score=564.46 Aligned_cols=449 Identities=33% Similarity=0.573 Sum_probs=398.7
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccc----hhhc--cccCCCCcccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDS----QNRQ--KVEKPLDANDL 74 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~d~~~l 74 (498)
|+++++.+. .+-.|.++++.+.|||+|||+++....+|+|.+...+|++.+.++-+ .+.. ++.++|+.+.+
T Consensus 1 M~~t~~sv~---~t~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvf 77 (653)
T KOG1138|consen 1 MEGTIGSVS---STYPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVF 77 (653)
T ss_pred CceEEEeec---cCCCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceE
Confidence 788888776 36899999999999999999999999999999877777764433322 2211 45788899999
Q ss_pred cccccccccccccccccCCcccEEEecCCCCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 010890 75 IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (498)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~ID~IlISH~DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~ 154 (498)
.++.|++..|+ .+.++.+.||+||||++..+.||||++++.||.|+||+|++|+++|+++|+|++.+.++ -+..
T Consensus 78 vesppe~~l~~-t~lld~stiDvILISNy~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier-----~p~~ 151 (653)
T KOG1138|consen 78 VESPPEFTLPA-THLLDASTIDVILISNYMGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIER-----FPKA 151 (653)
T ss_pred EcCCchhccch-hhhhcccceeEEEEcchhhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHh-----cccc
Confidence 88777776664 45678999999999999999999999999999999999999999999999999988775 3677
Q ss_pred CCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCch--HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEE
Q 010890 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPC--IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN 232 (498)
Q Consensus 155 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~ 232 (498)
++.+.|++..+...+|++++++.+ ...|+++ .+|++.|+++++.+.|.|++.+.|-+.||++.+||.+||++
T Consensus 152 ~S~~~Wk~k~~~~~lpsplk~~~~------~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsn 225 (653)
T KOG1138|consen 152 SSAPLWKKKLDSELLPSPLKKAVF------LGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSN 225 (653)
T ss_pred ccchhhhhhhhhhhcCCCchhhcc------ccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccc
Confidence 888999999777878877765321 4489998 99999999999999999999998899999999999999999
Q ss_pred EEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHH
Q 010890 233 WIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEM 312 (498)
Q Consensus 233 ~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~ 312 (498)
|.|.+..+++.|+||.+....|+.++|.+.++.+|+||++++++++ .++ . .
T Consensus 226 W~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~-------tan---p-----------------d-- 276 (653)
T KOG1138|consen 226 WLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLP-------TAN---P-----------------D-- 276 (653)
T ss_pred eEEecCCcceEEEecCcccccCCccccccccccccEEEEecccccc-------cCC---c-----------------c--
Confidence 9999999999999998888889999999999999999999998876 111 0 1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhh
Q 010890 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391 (498)
Q Consensus 313 ~~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~ 391 (498)
++..+||..|..+++++|+||+|+++.|.+.||++.|.+....+++ ++|||++||+|+..+++.++..|||+..+|+++
T Consensus 277 ~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkv 356 (653)
T KOG1138|consen 277 EMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKV 356 (653)
T ss_pred chhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccce
Confidence 1456789999999999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred ccCCCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEc-CCCChhhhcC
Q 010890 392 FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE-NEVDAELAVL 470 (498)
Q Consensus 392 ~~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~-~~~~~~~~~~ 470 (498)
+.|+.||+|..+++++||+++.++.+ .+.+.++.|||||++|.+++.|++.++++-|..+|+|++|+| |.++..++++
T Consensus 357 ylpe~p~~hs~lI~~~rlkiy~sl~g-~fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl~ 435 (653)
T KOG1138|consen 357 YLPEAPFPHSTLITINRLKIYLSLLG-LFSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYLLVLA 435 (653)
T ss_pred eccCCCCCCceEEeecceeehHHHHH-HHhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchhhhhc
Confidence 99999999999999999999999886 478999999999999999999999999999999999999986 6799999999
Q ss_pred CCcccceeEEEccccccccccccccC
Q 010890 471 PFKPISMKVLQCSFLSGKKYSFRKFN 496 (498)
Q Consensus 471 p~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
||||+.||+|+|||+.+.+ |||++
T Consensus 436 PfrpLamK~i~cpidtrln--fqql~ 459 (653)
T KOG1138|consen 436 PFRPLAMKIIYCPIDTRLN--FQQLP 459 (653)
T ss_pred CCccccceeEecccccccc--HHHHH
Confidence 9999999999999999876 56543
No 2
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=9.1e-65 Score=508.31 Aligned_cols=373 Identities=20% Similarity=0.294 Sum_probs=300.6
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
+++|+|||. .+||+||++|++++++||+|||++... .+ + ++.|+
T Consensus 181 vRvt~LGg~-~EVGRSa~lv~T~eSrVLlDcG~n~a~--------~~--------~-------------------~~~Py 224 (637)
T COG1782 181 VRVTALGGF-REVGRSALLVSTPESRVLLDCGVNVAG--------NG--------E-------------------DAFPY 224 (637)
T ss_pred EEEEeeccc-hhccceeEEEecCCceEEEeccccCCC--------Cc--------c-------------------ccCcc
Confidence 479999999 899999999999999999999999763 11 0 33555
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
+..|+ +.+.++|||+|||| ||||-||+|++ +||+||||||+||++++-++..|++.+.+.
T Consensus 225 l~vpE----~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~k------------- 286 (637)
T COG1782 225 LDVPE----FQPDELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYIEVAEK------------- 286 (637)
T ss_pred ccccc----ccccccceEEEeecccccccchhhhhh-cCCCCCeeeCCCcHHHHHHHHHHHHHHHHh-------------
Confidence 55443 34458999999999 99999999999 999999999999999999999999887652
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~ 237 (498)
.|.++ |+ .+||++++.+..++.|++..++.+++++|+++|||++||++..+-.
T Consensus 287 ----------------------eg~~p----pY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHI 340 (637)
T COG1782 287 ----------------------EGGEP----PYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHI 340 (637)
T ss_pred ----------------------cCCCC----CCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEe
Confidence 12211 55 8999999999999999999999999999999999999999987765
Q ss_pred --CCeEEEEecCCCCCCCCCCCCcc--cCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHH
Q 010890 238 --AKGNIAYISGSNFASGHAMDFDY--RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEME 313 (498)
Q Consensus 238 --~~~~ivY~TgD~~~~~~~~~~~~--~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~ 313 (498)
+...|+| |||+.+.... .+++ ...+.++.||+ |||||+++.. .+++ ++
T Consensus 341 GdGlyNi~y-TGDfk~~~tr-Ll~~A~n~FpRvEtlim--------------EsTYGg~~d~-------q~~R---~e-- 392 (637)
T COG1782 341 GDGLYNIVY-TGDFKFEKTR-LLEPANNKFPRVETLIM--------------ESTYGGRDDV-------QPPR---EE-- 392 (637)
T ss_pred cCCceeEEE-ecccccceee-ecChhhccCcchhheee--------------eeccCCcccc-------CccH---HH--
Confidence 4568999 9999775433 2333 24578999999 9999977653 0122 22
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhc
Q 010890 314 KLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF 392 (498)
Q Consensus 314 ~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~ 392 (498)
.-++|.+.|.+|+++||+||||+|++||.||++..|+++++++.+ .+|||++ +|..++++.+..++|||+.+.+..++
T Consensus 393 aE~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYlD-GMI~EatAIhtaYPEyL~~~lr~~I~ 471 (637)
T COG1782 393 AEKELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYLD-GMIWEATAIHTAYPEYLNKELRERIF 471 (637)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceeee-eeeeehhhhhhcCHHhhhHHHHHHHh
Confidence 235677889999999999999999999999999999999999988 6999998 78999999999999999999999876
Q ss_pred -cCCCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChhhhc--
Q 010890 393 -SGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAV-- 469 (498)
Q Consensus 393 -~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~~~~-- 469 (498)
.++|||-...+ + .+.+-...+.......||||+||||||++|++++||+.|+.||+|+++|++|. ++.+|
T Consensus 472 ~~g~NPF~se~f-~-----~V~~~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQ-AeGTLGR 544 (637)
T COG1782 472 HEGENPFLSEIF-K-----RVEGSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQ-AEGTLGR 544 (637)
T ss_pred cCCCCCccccce-e-----ecCChhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEec-cCcchhh
Confidence 58999953221 1 11112223445677899999999999999999999999999999999999765 44333
Q ss_pred --------CCCcc---------cceeEEEcccccccc
Q 010890 470 --------LPFKP---------ISMKVLQCSFLSGKK 489 (498)
Q Consensus 470 --------~p~~~---------~~~~~~~~~~~~~~~ 489 (498)
-|... ++|.|--.+=-|||.
T Consensus 545 riq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHs 581 (637)
T COG1782 545 RIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHS 581 (637)
T ss_pred hhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCc
Confidence 12222 577777766666663
No 3
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.9e-63 Score=476.29 Aligned_cols=345 Identities=21% Similarity=0.333 Sum_probs=287.2
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|++++||++ +++|+||+++.++|.+||+|||++++. + -+.+++|++.+...-
T Consensus 4 i~v~pLGAG-QdvGrSCilvsi~Gk~iM~DCGMHMG~--------n-----------------D~rRfPdFSyI~~~g-- 55 (501)
T KOG1136|consen 4 IKVTPLGAG-QDVGRSCILVSIGGKNIMFDCGMHMGF--------N-----------------DDRRFPDFSYISKSG-- 55 (501)
T ss_pred ceEEeccCC-cccCceEEEEEECCcEEEEeccccccc--------C-----------------ccccCCCceeecCCC--
Confidence 589999999 899999999999999999999999874 1 124677887663221
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
--.+.||+|+|||+ ||||+|||+.+.-||.||||+|.||+++++.+|+|+-++.-
T Consensus 56 ---------~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~v-------------- 112 (501)
T KOG1136|consen 56 ---------RFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAV-------------- 112 (501)
T ss_pred ---------CcccceeEEEEeeecccccccccchHhhhCCCCceEEecchhhhchHHHHHHHHHhc--------------
Confidence 12458999999999 99999999999999999999999999999999999865542
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~ 237 (498)
+++|+. . -+ .+++.+|++++..+...|.++++.++.|+++.|||++|++++.|..
T Consensus 113 --------------------d~kGe~--n--~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikv 168 (501)
T KOG1136|consen 113 --------------------DRKGES--N--FFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKV 168 (501)
T ss_pred --------------------cccCcc--c--ceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEe
Confidence 223321 1 12 7899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCC--CCCCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHH
Q 010890 238 AKGNIAYISGSNFAS--GHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKL 315 (498)
Q Consensus 238 ~~~~ivY~TgD~~~~--~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l 315 (498)
++.+|+| |||++.+ +|.-.... ...++|+||. ||||+...+. +++.++
T Consensus 169 Gd~svvY-TGDYnmTpDrHLGaA~i-d~~rpdlLIs--------------ESTYattiRd------------skr~rE-- 218 (501)
T KOG1136|consen 169 GDQSVVY-TGDYNMTPDRHLGAAWI-DKCRPDLLIS--------------ESTYATTIRD------------SKRCRE-- 218 (501)
T ss_pred cceeEEE-ecCccCCcccccchhhh-ccccCceEEe--------------eccceeeecc------------ccchhH--
Confidence 9999999 9999764 33322111 2247899999 9999876543 222222
Q ss_pred HHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 010890 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD 395 (498)
Q Consensus 316 ~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~ 395 (498)
++|+..|.+++.+||+||||+|++||+|||..+|+.+|++.++++|||+.++++.++..||+.+..|.++..++++.. .
T Consensus 219 RdFLk~VhecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~-r 297 (501)
T KOG1136|consen 219 RDFLKKVHECVARGGKVLIPVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVE-R 297 (501)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhcc-C
Confidence 347788999999999999999999999999999999999999999999999999999999999999999998887653 4
Q ss_pred CCCc--chhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCC
Q 010890 396 PLFA--HVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVD 464 (498)
Q Consensus 396 ~pF~--~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~ 464 (498)
|+|. |++-++ ......++|+|+|||+|||..|.|+++|+.|++||.|+|+++|||-
T Consensus 298 NmfdfkhiKpfd-------------~~~~~~pGp~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV 355 (501)
T KOG1136|consen 298 NMFDFKHIKPFD-------------RSYIEAPGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCV 355 (501)
T ss_pred CccccccCChhh-------------hhhhcCCCCEEEEcCCcccccccchHHHHhhCCCccceEeecCcee
Confidence 4553 432211 1234678999999999999999999999999999999999999873
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=2e-58 Score=499.90 Aligned_cols=349 Identities=19% Similarity=0.264 Sum_probs=280.3
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++|||+ +++|+||++|+.++.+||+|||+.... .. . ...|+
T Consensus 175 m~i~~LGg~-~eVG~Sc~Ll~~~~~~ILIDcG~~~~~--------~~-~--------------------------~~~p~ 218 (630)
T TIGR03675 175 VRVTALGGF-REVGRSALLLSTPESRILLDCGVNVGA--------NG-D--------------------------NAYPY 218 (630)
T ss_pred EEEEEEecC-CccCCCEEEEEECCCEEEEECCCCccc--------cc-h--------------------------hhccc
Confidence 789999999 899999999999999999999988542 00 0 00121
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
+.. ..++..+||+|||||+ ||+|+||+|.+ .|+++|||||+||++++..++.|++++...
T Consensus 219 l~~----~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~------------- 280 (630)
T TIGR03675 219 LDV----PEFQLDELDAVVITHAHLDHSGLVPLLFK-YGYDGPVYCTPPTRDLMTLLQLDYIDVAQR------------- 280 (630)
T ss_pred ccc----cCCCHHHCcEEEECCCCHHHHhhHHHHHH-hCCCCceeecHHHHHHHHHHHHHHHHHHHh-------------
Confidence 110 1124678999999999 99999999998 688999999999999999999988765431
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~ 237 (498)
.+. . .++ .+|++.++.++..++|++++++.++++|++++|||++||++|.+..
T Consensus 281 ----------------------~g~-~---~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i 334 (630)
T TIGR03675 281 ----------------------EGK-K---PPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHI 334 (630)
T ss_pred ----------------------cCC-C---CCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEE
Confidence 011 1 133 7899999999999999999999778999999999999999998876
Q ss_pred C--CeEEEEecCCCCCCCCCCCCcc-cCCCCCCEEEEcCCCCCCCcccCCCCcccCCCC--chHHhhhccCCCchhHHHH
Q 010890 238 A--KGNIAYISGSNFASGHAMDFDY-RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN--NWEELMNSLSNYDESVEEM 312 (498)
Q Consensus 238 ~--~~~ivY~TgD~~~~~~~~~~~~-~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~--~~~~~~~~~~~~~~~~~~~ 312 (498)
+ +.+|+| |||++........+. ....++|+||+ |||||++. +. ++ .
T Consensus 335 ~dg~~~IvY-TGD~~~~~~~ll~~a~~~~~~vD~LI~--------------ESTYg~~~~~~~---------~r-----~ 385 (630)
T TIGR03675 335 GDGLYNIVY-TGDFKYEKTRLLDPAVNKFPRVETLIM--------------ESTYGGRDDYQP---------SR-----E 385 (630)
T ss_pred CCCCEEEEE-eCCCCCCCCcCccchhhcCCCCCEEEE--------------eCccCCCCCCCC---------CH-----H
Confidence 4 469999 999987543322111 23467999999 99999876 42 22 2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhh
Q 010890 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391 (498)
Q Consensus 313 ~~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~ 391 (498)
+..++|++.|.+++++||+||||+|++||+||++.+|+++|+++++ ++|||++| ++.+++++|..++|||++..++.+
T Consensus 386 ~~e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i 464 (630)
T TIGR03675 386 EAEKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERI 464 (630)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHH
Confidence 2345678999999999999999999999999999999999998888 89999986 899999999999999999887776
Q ss_pred c-cCCCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCCh
Q 010890 392 F-SGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDA 465 (498)
Q Consensus 392 ~-~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~ 465 (498)
+ .+.+||... +++.+.+.++++.+....+||||||+||||++|+++++|+.|++||+|+|+|+||+.+
T Consensus 465 ~~~~~npf~~~------~~~~v~~~~~~~~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~ 533 (630)
T TIGR03675 465 FHEGENPFLSE------IFVRVEGSDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAE 533 (630)
T ss_pred hhcCCCcccCC------ceEEeCCHHHHHHHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCC
Confidence 5 577888542 2222233333334445688999999999999999999999999999999999988654
No 5
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=5.2e-56 Score=448.44 Aligned_cols=339 Identities=21% Similarity=0.313 Sum_probs=285.7
Q ss_pred eEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccc
Q 010890 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (498)
Q Consensus 2 ~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 81 (498)
++++||++ +|||+||++|+++|.+||+|||.+... .| + +++|+|
T Consensus 15 ~~~pLGag-~EVGRSC~ile~kGk~iMld~gvhpay--------sg--------------------------~-aslpf~ 58 (668)
T KOG1137|consen 15 KFTPLGAG-NEVGRSCHILEYKGKTIMLDCGVHPAY--------SG--------------------------M-ASLPFY 58 (668)
T ss_pred EEEECCCC-cccCceEEEEEecCeEEEeccccCccc--------cc--------------------------c-ccccch
Confidence 58999999 999999999999999999999999553 22 2 567776
Q ss_pred ccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 010890 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (498)
Q Consensus 82 ~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 159 (498)
. .++.+.||..+|||+ ||+++|||+++...|.|++|+|.||+++.+.++.|+.++...
T Consensus 59 d------~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~-------------- 118 (668)
T KOG1137|consen 59 D------EVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNR-------------- 118 (668)
T ss_pred h------hcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHHhhhhcceEeeec--------------
Confidence 4 368999999999999 999999999998899999999999999999999988654321
Q ss_pred cchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCC
Q 010890 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAK 239 (498)
Q Consensus 160 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~ 239 (498)
.+. ..-|. ..|+.++++++..+.|.|.+++ +|++++++.+||++|+|++.++..+
T Consensus 119 ---------------------s~~-~~Ly~--e~dl~~s~dKie~idfhe~~ev-~gIkf~p~~aGhVlgacMf~veiag 173 (668)
T KOG1137|consen 119 ---------------------SGD-DRLYT--EGDLMESMDKIETIDFHETVEV-NGIKFWPYHAGHVLGACMFMVEIAG 173 (668)
T ss_pred ---------------------cCc-ccccc--chhHHHhhhhheeeeecccccc-CCeEEEeeccchhhhheeeeeeece
Confidence 010 00011 6788899999999999999999 7999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCC-cccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHHHHH
Q 010890 240 GNIAYISGSNFASGHAMDF-DYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFI 318 (498)
Q Consensus 240 ~~ivY~TgD~~~~~~~~~~-~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (498)
-+|+| |||+.+..+.-.. ..-+..++|++|+ |||||-..|. + +.+|.+.|
T Consensus 174 v~lLy-TGd~sreeDrhl~aae~P~~~~dvli~--------------estygv~~h~---------~-----r~~re~rl 224 (668)
T KOG1137|consen 174 VRLLY-TGDYSREEDRHLIAAEMPPTGPDVLIT--------------ESTYGVQIHE---------P-----REEREGRL 224 (668)
T ss_pred EEEEe-ccccchhhcccccchhCCCCCccEEEE--------------EeeeeEEecC---------c-----hHHhhhhh
Confidence 99999 9999874332221 1224468999999 9999987775 2 23455678
Q ss_pred HHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCC-C-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 010890 319 CSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS-L-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP 396 (498)
Q Consensus 319 ~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~-l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~ 396 (498)
+..|..++.+||.||||+|++||+||||.+|+.+|...- + ++|||+.|++|++++..|+++..-|++.+++... -.|
T Consensus 225 t~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~-~~N 303 (668)
T KOG1137|consen 225 TWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSA-LRN 303 (668)
T ss_pred hhhHHhhccCCCceEeeeeecchHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhc-cCC
Confidence 999999999999999999999999999999999999874 4 7999999999999999999999999999887753 367
Q ss_pred CC--cchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCC
Q 010890 397 LF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEV 463 (498)
Q Consensus 397 pF--~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~ 463 (498)
|| +|++.+++ .+. ...-+|+|+.|++|||+.|.|+++|++|++|++|++|++||+
T Consensus 304 pfifk~vs~L~~--------~D~----f~D~gP~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~ 360 (668)
T KOG1137|consen 304 PFIFKHVSILRT--------GDW----FDDEGPSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYC 360 (668)
T ss_pred ceEeeccccccc--------ccc----ccccCCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccce
Confidence 86 55554443 322 245689999999999999999999999999999999999886
No 6
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.8e-52 Score=430.07 Aligned_cols=338 Identities=22% Similarity=0.385 Sum_probs=273.6
Q ss_pred eEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccc
Q 010890 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (498)
Q Consensus 2 ~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 81 (498)
+++.++|. .+-+.-||+|+++|.+||+||||+...-. +.+ .++
T Consensus 3 ~l~~~~g~-~de~~~cyllqiD~~~iLiDcGwd~~f~~--------------------------------~~i---~~l- 45 (764)
T KOG1135|consen 3 KLTTLCGA-TDEGPLCYLLQIDGVRILIDCGWDESFDM--------------------------------SMI---KEL- 45 (764)
T ss_pred eEEeeccc-cCCCcceEEEEEcCeEEEEeCCCcchhcc--------------------------------chh---hhh-
Confidence 45666666 46699999999999999999999965311 001 111
Q ss_pred ccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 010890 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (498)
Q Consensus 82 ~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 159 (498)
.-.+.+||||||||+ -|+|||||++..+|+++|||||.|++.||++.|.|+++...+
T Consensus 46 -------~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~~-------------- 104 (764)
T KOG1135|consen 46 -------KPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLYRSHGN-------------- 104 (764)
T ss_pred -------hcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHHHhcccc--------------
Confidence 114779999999999 799999999998999999999999999999999998643211
Q ss_pred cchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEec---CCEEEEEEecCCCCccEEEEE
Q 010890 160 WMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYN---GILIIKAFSSGLDIGACNWII 235 (498)
Q Consensus 160 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~---~~~~i~~~~aGH~lGs~~~~I 235 (498)
...+.-+ .+||+.||++|..++|+|++.+. .|++|+|++|||++|++.|+|
T Consensus 105 -------------------------~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI 159 (764)
T KOG1135|consen 105 -------------------------VGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKI 159 (764)
T ss_pred -------------------------cccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEE
Confidence 0012123 89999999999999999999996 479999999999999999999
Q ss_pred EeCCeEEEEecCCCCC--CCCCCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHH
Q 010890 236 SGAKGNIAYISGSNFA--SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEME 313 (498)
Q Consensus 236 ~~~~~~ivY~TgD~~~--~~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~ 313 (498)
...+++|+| .-|++. .+|......+.+.++.+||+++. .+.|.. .++++
T Consensus 160 ~k~~E~ivY-avd~NHkKe~HLNG~~l~~l~RPsllITda~-----------~~~~~~-----------------~~rkk 210 (764)
T KOG1135|consen 160 SKVGEDIVY-AVDFNHKKERHLNGCSLSGLNRPSLLITDAN-----------HALYSQ-----------------PRRKK 210 (764)
T ss_pred EecCceEEE-EEecccchhcccCCccccccCCcceEEeccc-----------cccccc-----------------cchhH
Confidence 999999999 778854 45554444456677888888431 122211 13345
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhC--CC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHh
Q 010890 314 KLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS--SL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEK 390 (498)
Q Consensus 314 ~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~--~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~ 390 (498)
|-++|.++|.++|++||+|||||+..||++||+.+|+++|.+. ++ ++||++.|+.+.++++|++++.|||++.+.+.
T Consensus 211 RDe~f~d~v~~~L~~~G~VlipVDtAgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~ 290 (764)
T KOG1135|consen 211 RDEQFLDTVLKTLRSGGNVLIPVDTAGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKM 290 (764)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecccHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHh
Confidence 6678999999999999999999999999999999999999997 67 79999999999999999999999999999988
Q ss_pred hcc-CCCCC--cchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcC
Q 010890 391 LFS-GDPLF--AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLEN 461 (498)
Q Consensus 391 ~~~-~~~pF--~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~ 461 (498)
+.. ..||| .|++++.+ .. +..+...+|+||+||...|+.|+++.+|.+|++||+|.|+||.
T Consensus 291 fe~~r~NpFefrhi~l~~~--------~~--dlsr~p~gpkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~ 354 (764)
T KOG1135|consen 291 FEEARNNPFEFRHITLCHS--------LQ--DLSRVPPGPKVVLASVPDLECGFSRDLFLEWASDPRNLILLTE 354 (764)
T ss_pred hhhccCCcceeeeeeeecC--------HH--HHhcCCCCCeEEEeeccchhcchhHHHHHHHhcCCcceEEEec
Confidence 875 66887 45555443 21 2334456699999999999999999999999999999999973
No 7
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-51 Score=426.99 Aligned_cols=334 Identities=19% Similarity=0.243 Sum_probs=273.6
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|++.++|++ +++|++|++|++++.+||+|||+.... .. +..|+
T Consensus 1 ~~~~~~g~~-~evg~s~~~l~~~~~~il~D~G~~~~~--------~~----------------------------~~~p~ 43 (427)
T COG1236 1 MTLRFLGAA-REVGRSCVLLETGGTRILLDCGLFPGD--------PS----------------------------PERPL 43 (427)
T ss_pred Cceeccccc-CCcCcEEEEEEECCceEEEECCCCcCc--------CC----------------------------ccCCC
Confidence 789999999 899999999999999999999999652 00 01122
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
.. ..+ +||+|+|||+ ||+|+||+++. .++++|||||.||+.+++.++.|.++++..
T Consensus 44 ~~------~~~--~vDavllTHaHlDH~g~lp~l~~-~~~~~~v~aT~~T~~l~~~~l~d~~~~~~~------------- 101 (427)
T COG1236 44 LP------PFP--KVDAVLLTHAHLDHIGALPYLVR-NGFEGPVYATPPTAALLKVLLGDSLKLAEG------------- 101 (427)
T ss_pred CC------CCC--CcCEEEeccCchhhhcccHHHHH-hccCCceeeccCHHHHHHHHHHHHHhhhcC-------------
Confidence 10 112 8999999999 99999999998 558899999999999999999998866531
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~ 237 (498)
... .++ .+|++.+++++++++|++++++ ++++|++++|||++||++|.++.
T Consensus 102 --------------------------~~~-~~~~~~d~~~~~~~~~~~~yg~~~~v-~~~~v~~~~AGHilGsa~~~le~ 153 (427)
T COG1236 102 --------------------------PDK-PPYSEEDVERVPDLIRPLPYGEPVEV-GGVKVTFYNAGHILGSAAILLEV 153 (427)
T ss_pred --------------------------CCC-CCCchhHHHhhHhhEEEecCCCceEe-eeEEEEEecCCCccceeEEEEEe
Confidence 001 144 8999999999999999999999 67999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHHHH
Q 010890 238 AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAF 317 (498)
Q Consensus 238 ~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (498)
++.+|+| |||++...+....+.+....+|+||+ |+|||++.|. .++ +.+ +.
T Consensus 154 ~~~~ily-tGD~~~~~~~l~~~a~~~~~~DvLI~--------------EsTYg~~~~~---------~r~---~~e--~~ 204 (427)
T COG1236 154 DGGRILY-TGDVKRRKDRLLNGAELPPCIDVLIV--------------ESTYGDRLHP---------NRD---EVE--RR 204 (427)
T ss_pred CCceEEE-EeccCCCcCCCCCccccCCCCcEEEE--------------ecccCCccCC---------CHH---HHH--HH
Confidence 9999999 99998765544333333333799999 9999998874 332 222 23
Q ss_pred HHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 010890 318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPL 397 (498)
Q Consensus 318 ~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~p 397 (498)
|++.|.+++.+||+||||+|++||+||||.+|+.+|.++ ++|||++|+++..+..+++.+.+|+.......+...
T Consensus 205 f~~~v~~~l~~GG~vlipafa~graQEll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--- 279 (427)
T COG1236 205 FIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR--- 279 (427)
T ss_pred HHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh---
Confidence 789999999999999999999999999999999999877 899999999999999999999999998887765432
Q ss_pred CcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChh
Q 010890 398 FAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAE 466 (498)
Q Consensus 398 F~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~ 466 (498)
|..++ + ...........+|+||+++++|+.+|.++.+++.|+.+++|.++|++|....
T Consensus 280 ~~~v~---~--------~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~ 337 (427)
T COG1236 280 FRFVE---S--------RRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEG 337 (427)
T ss_pred ccccc---c--------hhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEEcccccCC
Confidence 32221 1 1111223456789999999999999999999999999999999999776443
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.96 E-value=7.8e-28 Score=253.12 Aligned_cols=302 Identities=16% Similarity=0.112 Sum_probs=200.8
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
+++++|||. +++|+|||+|+.++..||+|||..+.... ..+ .+...||+..|
T Consensus 1 ~~i~~lGG~-~eiG~n~~ll~~~~~~iliD~G~~~~~~~-----~~g----------------~~~~iPd~~~l------ 52 (422)
T TIGR00649 1 VKIFALGGL-GEIGKNMYVVEIDDDVFIFDAGILFPEDA-----MLG----------------VDGVIPDFSYL------ 52 (422)
T ss_pred CEEEEccCC-CccCCeEEEEEECCeEEEEeCCCCCCccc-----ccC----------------CccccCCHHHH------
Confidence 589999999 89999999999999999999998754200 000 00111222222
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
.....+||+|||||+ ||+||||+|.+..+ ..|||+|+.|..+.+..+.+
T Consensus 53 --------~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~-~~~Vy~~~~t~~~l~~~~~~-------------------- 103 (422)
T TIGR00649 53 --------QENQDKVKGIFITHGHEDHIGAVPYLFHTVG-FPPIYGTPLTIALIKSKIKE-------------------- 103 (422)
T ss_pred --------HhccccCCEEEECCCChHHhCcHHHHHHhCC-CCeEEeCHHHHHHHHHHHHh--------------------
Confidence 013458999999999 99999999987322 36999999998765432210
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCC-CccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-IGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~-lGs~~~~I~~ 237 (498)
.+. . .. ..++.+++++.+++.++++|++++++|. +||+++++++
T Consensus 104 ----------------------~~~-~-~~-----------~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~ 148 (422)
T TIGR00649 104 ----------------------NKL-N-VR-----------TDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHT 148 (422)
T ss_pred ----------------------cCC-C-CC-----------CceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEe
Confidence 000 0 00 1356788999999933699999999995 7999999999
Q ss_pred CCeEEEEecCCCCCCCCCC---CCccc-----CCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhH
Q 010890 238 AKGNIAYISGSNFASGHAM---DFDYR-----AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESV 309 (498)
Q Consensus 238 ~~~~ivY~TgD~~~~~~~~---~~~~~-----~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~ 309 (498)
++++|+| |||+....... ..+.. ...++|+||+ |+||+..... . .
T Consensus 149 ~~~~ivy-tGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~--------------EsT~~~~~~~---------~-~-- 201 (422)
T TIGR00649 149 PLGYIVY-TGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLIS--------------DSTNVENPGF---------T-P-- 201 (422)
T ss_pred CCcEEEE-CCCcCCCCCccCCcccCHHHHHhhcccCeEEEEE--------------CCCCCCCCCC---------C-C--
Confidence 8899999 99996532221 11111 1256899999 9999864321 0 0
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCeEEEecCC--hHHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHHHHHHHHHHHH
Q 010890 310 EEMEKLAFICSCAIDSV-KAGGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQ 386 (498)
Q Consensus 310 ~~~~~l~~~~~~I~~tl-~~gG~VLIPv~~--~Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~ 386 (498)
.+. .+.+.+.+++ +.+|.+++++|+ .+|+|++++...++ ..+|++++.+..++++.+..+ .|+.
T Consensus 202 ~e~----~~~~~i~~~~~~~~~~viv~~fa~~~~R~~~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~-g~~~-- 268 (422)
T TIGR00649 202 SEA----KVLEQLNDIFKNAKGRVIVATFASNIHRVQQLIQIARKQ------GRKFAVYGRSMEHLFGIARRL-GLIK-- 268 (422)
T ss_pred CHH----HHHHHHHHHHHhCCCEEEEEEccccHHHHHHHHHHHHHh------CCEEEEECccHHHHHHHHHHc-CCcc--
Confidence 011 1123345555 468899999999 89999999877443 458999988888888777543 2221
Q ss_pred HHHhhccCCCCCcchhhhhccccccccccCChhhhccC-CCCEEEEecCCCCCcchHHHHHHHHcCCC--------CceE
Q 010890 387 RQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNW-QEPCIVFSPHWSLRLGPTIHLLRRWSGDH--------NSLL 457 (498)
Q Consensus 387 ~~~~~~~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~-~~p~Vv~as~~~l~~G~s~~~l~~~~~~~--------~n~I 457 (498)
.+...+ + +.+.++.. +++.|+++|++ ++|+ ..++.+++.++ +++|
T Consensus 269 ------~~~~~~-----~------------~~~~i~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~v 322 (422)
T TIGR00649 269 ------NPHNNF-----I------------SLKEVNNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTV 322 (422)
T ss_pred ------CCccce-----e------------CHHHHhcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEE
Confidence 111000 0 11122233 46889999877 5555 77788888874 3788
Q ss_pred EEc
Q 010890 458 VLE 460 (498)
Q Consensus 458 il~ 460 (498)
|++
T Consensus 323 i~s 325 (422)
T TIGR00649 323 VFS 325 (422)
T ss_pred EEE
Confidence 875
No 9
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.88 E-value=4.8e-21 Score=203.37 Aligned_cols=251 Identities=16% Similarity=0.151 Sum_probs=174.1
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|.+|||. +|+|.+|+++++++.-+++|||..+..- . ...-|...||.+.|.+
T Consensus 9 i~i~~lGG~-~EiGkN~~vve~~~~i~i~D~G~~fp~~--------~-------------~~gvDliIPd~~yl~~---- 62 (555)
T COG0595 9 IKIFALGGV-GEIGKNMYVVEYGDDIIILDAGLKFPED--------D-------------LLGVDLIIPDFSYLEE---- 62 (555)
T ss_pred eEEEEecCh-hhhccceEEEEECCcEEEEECccccCcc--------c-------------cccccEEecChHHhhh----
Confidence 579999999 8999999999999999999999997521 0 0011333455555421
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
...+|++|||||+ ||+||||||..... ..|||+|+.|..+.+.-+.+.-
T Consensus 63 ----------n~~kvkgI~lTHgHeDHIGaip~ll~~~~-~~piy~s~lt~~Li~~k~~~~~------------------ 113 (555)
T COG0595 63 ----------NKDKVKGIFLTHGHEDHIGALPYLLKQVL-FAPIYASPLTAALIKEKLKEHG------------------ 113 (555)
T ss_pred ----------ccccceEEEecCCchhhccchHHHHhcCC-cCceecCHhhHHHHHHHHHHhc------------------
Confidence 3459999999999 99999999998433 3999999999988765544210
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCC-CccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-IGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~-lGs~~~~I~~ 237 (498)
. ...+ ..++.++.++.+++ +++.|++++.-|+ ++|+++.|++
T Consensus 114 ------------------------~-~~~~-----------~~~~ev~~~~~i~~-~~~~v~f~~vtHSIPds~g~~i~T 156 (555)
T COG0595 114 ------------------------L-FKNE-----------NELHEVKPGSEIKF-GSFEVEFFPVTHSIPDSLGIVIKT 156 (555)
T ss_pred ------------------------c-cccc-----------CceEEeCCCCeEEe-CcEEEEEEeecccCccceEEEEEC
Confidence 0 0011 25788999999999 8999999999997 5899999999
Q ss_pred CCeEEEEecCCCCCCCCCCC---CcccC-----CCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhH
Q 010890 238 AKGNIAYISGSNFASGHAMD---FDYRA-----IQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESV 309 (498)
Q Consensus 238 ~~~~ivY~TgD~~~~~~~~~---~~~~~-----~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~ 309 (498)
+...|+| |||+.....+.. .|... -.++++||+ |||-...... +.
T Consensus 157 p~G~Iv~-TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~Lis--------------dsTna~~pg~--------t~---- 209 (555)
T COG0595 157 PEGNIVY-TGDFKFDPTPVDGEPTDLARLAEIGKEGVLALIS--------------DSTNAENPGF--------TP---- 209 (555)
T ss_pred CCccEEE-eCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEe--------------CCcccCCCCC--------CC----
Confidence 9999999 999965433322 23211 146899999 7776553322 01
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCeEEEecCCh--HHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHHHHHH
Q 010890 310 EEMEKLAFICSCAIDSVK-AGGSVLIPINRV--GVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIP 380 (498)
Q Consensus 310 ~~~~~l~~~~~~I~~tl~-~gG~VLIPv~~~--Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ 380 (498)
.|.+-. +.+.+.++ ..|.|++-+|+. +|+|.++..= -+. .-+|.+.+-...+....+....
T Consensus 210 SE~~v~----~~l~~i~~~a~grVIv~tfaSni~Ri~~i~~~A---~~~---gR~vvv~GrSm~~~~~~a~~lg 273 (555)
T COG0595 210 SESEVG----ENLEDIIRNAKGRVIVTTFASNIERIQTIIDAA---EKL---GRKVVVTGRSMERLIAIARRLG 273 (555)
T ss_pred CHHHHH----HHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHH---HHc---CCeEEEEcHhHHHHHHHHhhcc
Confidence 111111 12333333 378899999877 7888888654 222 3477777766666666655443
No 10
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.85 E-value=2e-21 Score=170.26 Aligned_cols=117 Identities=26% Similarity=0.416 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhCCC--ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCcchhhhhccccccccccCCh
Q 010890 342 FLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIKEKKIHVFPAVHSP 418 (498)
Q Consensus 342 ~~Ell~~L~~~~~~~~l--~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~-pF~~~~~~~~~~l~~~~~~~~~ 418 (498)
+||||.+|+++|+++++ ++|||++|++|.+++++|+++.|||++.+++++...+. ||.+++.++. +.+.
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 72 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKS--------VDES 72 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEES--------HHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecc--------cccc
Confidence 69999999999999986 79999999999999999999999999998877654333 6766554443 4333
Q ss_pred hhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChh
Q 010890 419 KLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAE 466 (498)
Q Consensus 419 ~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~ 466 (498)
+.+....+|+||||++|||++|+++++|++|++||+|+||||+|++++
T Consensus 73 ~~l~~~~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~ 120 (126)
T PF10996_consen 73 KELNALSGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPG 120 (126)
T ss_dssp HHHHHSCSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TT
T ss_pred cccccCCCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCC
Confidence 444445699999999999999999999999999999999999998765
No 11
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.71 E-value=6.8e-17 Score=158.43 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=111.7
Q ss_pred CeEEecCCCCC------------------CC----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCcc
Q 010890 1 MKFTCLCQGGG------------------FN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSD 58 (498)
Q Consensus 1 m~i~~lGg~~~------------------~v----g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~ 58 (498)
||||+||.+++ .+ .++|++|+.++..||+|||.... .
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~----------~----------- 59 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDL----------A----------- 59 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHH----------h-----------
Confidence 99999998854 12 25799999999999999995411 0
Q ss_pred chhhccccCCCCcccccccccccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHH
Q 010890 59 SQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 136 (498)
Q Consensus 59 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l 136 (498)
. . +...+||+|||||. ||++||+.+........+||++..+..+.
T Consensus 60 -----------------~---~---------~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~---- 106 (250)
T PRK11244 60 -----------------E---R---------FPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCD---- 106 (250)
T ss_pred -----------------h---c---------CCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHH----
Confidence 0 0 13458999999999 99999988754233467999998764321
Q ss_pred HHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhc-eeecCCCeEEecC
Q 010890 137 EELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKV-QTLRFGEEACYNG 215 (498)
Q Consensus 137 ~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i-~~v~y~e~~~l~~ 215 (498)
+..+. + + . ..+ ..+..++.+++ +
T Consensus 107 -~~~~~---------------------------~-----------~--~--------------~~~~~~l~~~~~~~~-~ 130 (250)
T PRK11244 107 -DLFKH---------------------------P-----------G--I--------------LDFSHPLEPFEPFDL-G 130 (250)
T ss_pred -HHhcC---------------------------c-----------c--c--------------cccccccCCCCCeeE-C
Confidence 11000 0 0 0 011 23556788899 7
Q ss_pred CEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 216 ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 216 ~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
+++|+++++.|..++.+|+|+.++++|+| |||+........ +.-...++|+||+
T Consensus 131 ~~~I~~~~~~H~~~s~g~~i~~~~~~i~y-sgDt~~~~~~~~-~~~~~~~~Dlli~ 184 (250)
T PRK11244 131 GLQVTPLPLNHSKLTFGYLLETAHSRVAY-LTDTVGLPEDTL-KFLRNNQPDLLVL 184 (250)
T ss_pred CEEEEEEeeCCCcceeEEEEecCCeEEEE-EcCCCCCCHHHH-HHHhcCCCCEEEE
Confidence 99999999999999999999999999999 999864321110 0001257999999
No 12
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.66 E-value=3.6e-16 Score=157.25 Aligned_cols=172 Identities=20% Similarity=0.222 Sum_probs=120.3
Q ss_pred eEEecCCCCCCC----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccc
Q 010890 2 KFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFA 77 (498)
Q Consensus 2 ~i~~lGg~~~~v----g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 77 (498)
||++||.+|+.+ ..+|++|+.++.+||+|||.+... + +..
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~--------~---------------------------l~~- 44 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQR--------Q---------------------------MLR- 44 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHH--------H---------------------------HHH-
Confidence 689999985432 468999999999999999987431 0 000
Q ss_pred ccccccccccccccCCcccEEEecCC--CCCCccchhccccC-----CceeEEEehHHHHHHHHHHHHHHHHHHhhhhhc
Q 010890 78 EPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEG-----FSAKIYITEAAARIGQLMMEELICMNMEYRQFY 150 (498)
Q Consensus 78 ~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g-----~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~ 150 (498)
..++..+||+|||||. ||++|||.+..... -..+||++..+.+..+..+. ...
T Consensus 45 ----------~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~----~~~------ 104 (299)
T TIGR02651 45 ----------SGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLR----VSY------ 104 (299)
T ss_pred ----------cCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHH----Hcc------
Confidence 1124568999999999 99999998875322 24689999988765332211 100
Q ss_pred CCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCC-eEEecCCEEEEEEecCCCCc
Q 010890 151 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE-EACYNGILIIKAFSSGLDIG 229 (498)
Q Consensus 151 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e-~~~l~~~~~i~~~~aGH~lG 229 (498)
. ...+ + -+++.+..++ .+.. ++++|++++.-|...
T Consensus 105 -------------------------------~--~~~~-~---------~~~~~~~~~~~~~~~-~~~~v~~~~~~H~~~ 140 (299)
T TIGR02651 105 -------------------------------T--YLNY-P---------IKIHEIEEGGLVFED-DGFKVEAFPLDHSIP 140 (299)
T ss_pred -------------------------------c--CCCc-e---------EEEEEccCCCceEec-CCEEEEEEEcCCCCc
Confidence 0 0001 1 1345566666 4777 799999999999999
Q ss_pred cEEEEEEeC--------------------------------------------------CeEEEEecCCCCCCCCCCCCc
Q 010890 230 ACNWIISGA--------------------------------------------------KGNIAYISGSNFASGHAMDFD 259 (498)
Q Consensus 230 s~~~~I~~~--------------------------------------------------~~~ivY~TgD~~~~~~~~~~~ 259 (498)
+.+|+|+.+ +++|+| +||+++....
T Consensus 141 ~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y-~gDt~~~~~~---- 215 (299)
T TIGR02651 141 SLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAY-TGDTRPCEEV---- 215 (299)
T ss_pred eEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEE-ecCCCChHHH----
Confidence 999999864 468999 9999764211
Q ss_pred ccCCCCCCEEEEcCCCCCCCcccCCCCcccCCC
Q 010890 260 YRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDN 292 (498)
Q Consensus 260 ~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~ 292 (498)
.+.+.++|+||+ |+||.+.
T Consensus 216 ~~~~~~~dlLi~--------------E~~~~~~ 234 (299)
T TIGR02651 216 IEFAKNADLLIH--------------EATFLDE 234 (299)
T ss_pred HHHHcCCCEEEE--------------ECCCCch
Confidence 235679999999 8888653
No 13
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.61 E-value=2.9e-15 Score=151.05 Aligned_cols=170 Identities=19% Similarity=0.246 Sum_probs=118.4
Q ss_pred EEecCCCCCCC----CCCeEEEEEC----CEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccc
Q 010890 3 FTCLCQGGGFN----FPPCHILNVS----GFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDL 74 (498)
Q Consensus 3 i~~lGg~~~~v----g~sc~ll~~~----~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 74 (498)
|++||.+++.+ +.+|++|+.+ +.+||||||.+.... |
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~-----------------------------------l 45 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQ-----------------------------------L 45 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHHH-----------------------------------H
Confidence 57898885444 3689999985 379999999885420 0
Q ss_pred cccccccccccccccccCCcccEEEecCC--CCCCccchhccc---cC--CceeEEEehHHHHHHHHHHHHHHHHHHhhh
Q 010890 75 IFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM---EG--FSAKIYITEAAARIGQLMMEELICMNMEYR 147 (498)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~---~g--~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~ 147 (498)
.. ..++..+||+|||||. ||++|||.|... .+ -..+||+.+.+.+..+.++. +..
T Consensus 46 ~~-----------~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~----~~~--- 107 (303)
T TIGR02649 46 LH-----------TAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALR----ISG--- 107 (303)
T ss_pred HH-----------hCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHH----hcc---
Confidence 00 1135679999999999 999999987632 12 24689999988765433221 100
Q ss_pred hhcCCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCC
Q 010890 148 QFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 227 (498)
Q Consensus 148 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~ 227 (498)
.|. .+ + -.++.+..++.++. ++++|++++.-|.
T Consensus 108 -----------~~~-------------------------~~-~---------~~~~~i~~~~~~~~-~~~~v~~~~~~H~ 140 (303)
T TIGR02649 108 -----------SWT-------------------------DY-P---------LEIVEIGAGEILDD-GLRKVTAYPLEHP 140 (303)
T ss_pred -----------ccc-------------------------CC-c---------eEEEEcCCCceEec-CCeEEEEEEccCc
Confidence 000 00 1 13456666777777 7899999999999
Q ss_pred CccEEEEEEe--------------------------------------------------CCeEEEEecCCCCCCCCCCC
Q 010890 228 IGACNWIISG--------------------------------------------------AKGNIAYISGSNFASGHAMD 257 (498)
Q Consensus 228 lGs~~~~I~~--------------------------------------------------~~~~ivY~TgD~~~~~~~~~ 257 (498)
..+.+|+|+. .+++|+| +||+++....
T Consensus 141 ~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y-~gDt~~~~~~-- 217 (303)
T TIGR02649 141 LECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAI-FGDTGPCDAA-- 217 (303)
T ss_pred cceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEE-ecCCCChHHH--
Confidence 9999999975 4578999 9999753211
Q ss_pred CcccCCCCCCEEEEcCCCCCCCcccCCCCcccCC
Q 010890 258 FDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291 (498)
Q Consensus 258 ~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~ 291 (498)
.+.+.++|+||+ |+||.+
T Consensus 218 --~~~~~~adlLi~--------------Eat~~~ 235 (303)
T TIGR02649 218 --LDLAKGVDVMVH--------------EATLDI 235 (303)
T ss_pred --HHHhcCCCEEEE--------------eccCCh
Confidence 235689999999 899854
No 14
>PRK02113 putative hydrolase; Provisional
Probab=99.59 E-value=7.2e-15 Score=144.22 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=111.0
Q ss_pred CeEEecCCCCCC--CC------------------CCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccch
Q 010890 1 MKFTCLCQGGGF--NF------------------PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60 (498)
Q Consensus 1 m~i~~lGg~~~~--vg------------------~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 60 (498)
|++++||.++.+ +. ++|++|+.++.+||+|||.+... +
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~~--------~-------------- 58 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFRE--------Q-------------- 58 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHHH--------H--------------
Confidence 899999955222 22 36799999999999999987432 0
Q ss_pred hhccccCCCCcccccccccccccccccccccCCcccEEEecCC--CCCCccchhccc-cCCceeEEEehHHHHHHHHHHH
Q 010890 61 NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM-EGFSAKIYITEAAARIGQLMME 137 (498)
Q Consensus 61 ~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~-~g~~~~Iy~T~pT~~l~~~~l~ 137 (498)
+.. ....+||+|||||. ||++|||.+... .....+||+++.+.+.....+.
T Consensus 59 -------------l~~-------------~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~ 112 (252)
T PRK02113 59 -------------MLR-------------LPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMP 112 (252)
T ss_pred -------------HHh-------------cCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCC
Confidence 000 13558999999999 999999988542 1236899999877554221100
Q ss_pred HHHHHHHhhhhhcCCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCE
Q 010890 138 ELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGIL 217 (498)
Q Consensus 138 d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~ 217 (498)
. .+. ...|..+ .+ .+++.+..++.+++ +++
T Consensus 113 ~----------~~~---------------------------------~~~~~~~-~~-----~~~~~~~~g~~~~~-~~~ 142 (252)
T PRK02113 113 Y----------CFV---------------------------------EHSYPGV-PN-----IPLREIEPDRPFLV-NHT 142 (252)
T ss_pred e----------eec---------------------------------cCCCCCC-cc-----eeeEEcCCCCCEEE-CCe
Confidence 0 000 0001000 00 14667888899999 799
Q ss_pred EEEEEecCCC-CccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 218 IIKAFSSGLD-IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 218 ~i~~~~aGH~-lGs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
+|++++.-|. ..+++|+| ++++| +||+....... .+.++++|+||+
T Consensus 143 ~i~~~~~~H~~~~~~gy~i----~~i~y-~~Dt~~~~~~~---~~~~~~~DlLi~ 189 (252)
T PRK02113 143 EVTPLRVMHGKLPILGYRI----GKMAY-ITDMLTMPEEE---YEQLQGIDVLVM 189 (252)
T ss_pred EEEEEEecCCCccEEEEEe----CCEEE-ccCCCCCCHHH---HHHhcCCCEEEE
Confidence 9999999996 56889999 57999 99986422111 234679999999
No 15
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.58 E-value=9.5e-15 Score=142.19 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=102.0
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
.++|++|+.++..||||||...-. . . +...
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~~~--------------------------------------~---~---------~~~~ 55 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTDLA--------------------------------------E---R---------FPPG 55 (238)
T ss_pred cceEEEEEECCcEEEEECCChhHh--------------------------------------h---c---------cCcc
Confidence 467999999999999999954210 0 0 1345
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+||+|||||. ||++||+.+....+-+.+||+++.+..+ .+..+.
T Consensus 56 ~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~-----~~~~~~----------------------------- 101 (238)
T TIGR03307 56 SLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGC-----DDLFKH----------------------------- 101 (238)
T ss_pred CCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhH-----HHHhcC-----------------------------
Confidence 8999999999 9999998775433346899999887532 111000
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA 251 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~~ 251 (498)
.+ +. .-...+..++.+++ ++++|+++++.|..++.+|+|+.++++++| +||+..
T Consensus 102 ---------~~-----~~----------~~~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~g~~i~~~~~~i~y-~gDt~~ 155 (238)
T TIGR03307 102 ---------PG-----IL----------DFSKPLEAFEPFDL-GGLRVTPLPLVHSKLTFGYLLETDGQRVAY-LTDTAG 155 (238)
T ss_pred ---------cc-----cc----------cccccccCCceEEE-CCEEEEEEecCCCCcceEEEEecCCcEEEE-EecCCC
Confidence 00 00 00123567888999 799999999999999999999999999999 999864
Q ss_pred CCCCCCCcccCC--CCCCEEEE
Q 010890 252 SGHAMDFDYRAI--QGSDLILY 271 (498)
Q Consensus 252 ~~~~~~~~~~~~--~~~D~LI~ 271 (498)
..... .+.+ .++|+||+
T Consensus 156 ~~~~~---~~~~~~~~~D~li~ 174 (238)
T TIGR03307 156 LPPDT---EAFLKNHPLDVLIL 174 (238)
T ss_pred CCHHH---HHHHhcCCCCEEEE
Confidence 22111 1122 37999999
No 16
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.57 E-value=1.1e-14 Score=146.46 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=83.0
Q ss_pred ccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHh
Q 010890 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (498)
Q Consensus 90 ~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (498)
+...+||+|||||. ||++|||.|.+ +...+||+++.|.+....... |...
T Consensus 76 ~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~~~~~l~~~~~----------------------~f~~---- 127 (302)
T PRK05184 76 LRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPAVLEDLSTGFP----------------------IFNV---- 127 (302)
T ss_pred CCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHHHHHHHHhcCC----------------------cccc----
Confidence 35668999999999 99999999954 568899999988654211000 0000
Q ss_pred hchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEec--CCEEEEEEecCC-------------CCccEE
Q 010890 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN--GILIIKAFSSGL-------------DIGACN 232 (498)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~--~~~~i~~~~aGH-------------~lGs~~ 232 (498)
...|.. -+++.+..++.+++. ++++|++++.-| ...+.+
T Consensus 128 -----------------~~~~~~---------~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~g 181 (302)
T PRK05184 128 -----------------LDHYGG---------VQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIG 181 (302)
T ss_pred -----------------cccccc---------eeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEE
Confidence 000000 134566667788883 389999999975 356899
Q ss_pred EEEE--eCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 233 WIIS--GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 233 ~~I~--~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
|+|+ .++++++|.|+|....... .+.++++|+||+
T Consensus 182 yri~~~~~g~~~~y~tD~~~~~~~~----~~~~~gaDlli~ 218 (302)
T PRK05184 182 LRIEDRATGKRLFYAPGLAEVTDAL----RARLAGADCVLF 218 (302)
T ss_pred EEEEecCCCcEEEEECCCCCCCHHH----HHHHhcCCEEEE
Confidence 9995 7888999943443332111 235689999999
No 17
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.54 E-value=4.5e-14 Score=141.72 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=106.0
Q ss_pred CCeEEEEE-CCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 15 PPCHILNV-SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 15 ~sc~ll~~-~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
++|++|+. ++.+||+|||.++.... . . ...+ ....+++..
T Consensus 38 rss~ll~~~g~~~iLID~Gpd~r~ql--------~---------------------------~-~~~~---~~~~gl~~~ 78 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNASPDIRQQI--------Q---------------------------A-TPAL---HPQRGLRHT 78 (302)
T ss_pred ccEEEEEeCCCEEEEEECCHHHHHHH--------H---------------------------h-Cccc---ccccCCCcc
Confidence 57889966 55799999999866411 0 0 0000 000134677
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+||+|||||. ||++||+.|.+ +...|||+++.|.+..+. . . .+..
T Consensus 79 ~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~~~L~~----~----~--------------------~~~~--- 125 (302)
T TIGR02108 79 PIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVLQDLSD----N----P--------------------IFNV--- 125 (302)
T ss_pred cCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHHHHHHh----C----C--------------------Cccc---
Confidence 9999999999 99999999965 568999999998664321 0 0 0000
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEec----CCEEEEEEecC--------C------CCccEEE
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN----GILIIKAFSSG--------L------DIGACNW 233 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~----~~~~i~~~~aG--------H------~lGs~~~ 233 (498)
...| . -+.+.+..++.+.+. ++++|++++.- | ...+++|
T Consensus 126 -------------~~~~---------~-~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy 182 (302)
T TIGR02108 126 -------------LDHW---------N-VRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGL 182 (302)
T ss_pred -------------cchh---------h-ccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEE
Confidence 0001 0 123556777888763 25999999998 5 2578999
Q ss_pred EEEeC--CeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 234 IISGA--KGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 234 ~I~~~--~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
+|+.+ +++++| ++|++..+... .+.++++|+||+
T Consensus 183 ~i~~~~~g~~~~y-~tD~g~~~~~~---~~~l~~~d~lii 218 (302)
T TIGR02108 183 KIEDGTTGKRLFY-IPGCAEITDDL---KARMAGADLVFF 218 (302)
T ss_pred EEEeCCCCcEEEE-ECCCCCCCHHH---HHHHhCCCEEEE
Confidence 99988 899999 89986422111 245788999999
No 18
>PRK00055 ribonuclease Z; Reviewed
Probab=99.49 E-value=3.4e-14 Score=140.43 Aligned_cols=88 Identities=24% Similarity=0.270 Sum_probs=65.1
Q ss_pred CeEEecCCCCCCC----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccc
Q 010890 1 MKFTCLCQGGGFN----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (498)
Q Consensus 1 m~i~~lGg~~~~v----g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 76 (498)
|||++||+++..+ +++|++|+.++.+||+|||.+.... +..
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~~-----------------------------------l~~ 46 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQ-----------------------------------LLK 46 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHHH-----------------------------------HHH
Confidence 8999999984322 4899999999999999999874310 000
Q ss_pred cccccccccccccccCCcccEEEecCC--CCCCccchhcccc-----CCceeEEEehHHHHHHHH
Q 010890 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME-----GFSAKIYITEAAARIGQL 134 (498)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~-----g~~~~Iy~T~pT~~l~~~ 134 (498)
..+...+||+|||||. ||++|||.|.... ....+||+++.+.++...
T Consensus 47 -----------~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~ 100 (270)
T PRK00055 47 -----------TGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVET 100 (270)
T ss_pred -----------cCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHH
Confidence 1124668999999999 9999999887422 124689999888765443
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.40 E-value=3.5e-12 Score=123.05 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=105.1
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++||. +|++|+.++.+||+||+..-... .. + .
T Consensus 1 m~i~~lG~-------s~~li~~~~~~iLiDP~~~~~~~-------~~--------------------------~----~- 35 (228)
T PRK00685 1 MKITWLGH-------SAFLIETGGKKILIDPFITGNPL-------AD--------------------------L----K- 35 (228)
T ss_pred CEEEEEcc-------eEEEEEECCEEEEECCCCCCCCC-------CC--------------------------C----C-
Confidence 89999974 69999999999999997641100 00 0 0
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
....++|+|||||. ||++++..+.. ..+.+||++..+.+..+ .
T Consensus 36 ---------~~~~~id~vliTH~H~DH~~~~~~~~~--~~~~~v~~~~~~~~~~~----~-------------------- 80 (228)
T PRK00685 36 ---------PEDVKVDYILLTHGHGDHLGDTVEIAK--RTGATVIANAELANYLS----E-------------------- 80 (228)
T ss_pred ---------hhcCcccEEEeCCCCccccccHHHHHH--hCCCEEEEeHHHHHHHH----h--------------------
Confidence 01228999999999 99999887654 34689999875432210 0
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCc---------
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG--------- 229 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lG--------- 229 (498)
.+ + .++..++.++.+++ ++++|+++++-|...
T Consensus 81 ----------------------~~-----~-----------~~~~~~~~~~~~~~-~~~~i~~~p~~H~~~~~~~~~~~~ 121 (228)
T PRK00685 81 ----------------------KG-----V-----------EKTHPMNIGGTVEF-DGGKVKLTPALHSSSFIDEDGITY 121 (228)
T ss_pred ----------------------cC-----C-----------CceeeccCCCcEEE-CCEEEEEEEEEcCCCCcCCCCccc
Confidence 00 0 24567788899999 799999999999653
Q ss_pred ---cEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 230 ---ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 230 ---s~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
+.+|+|+.++++|+| |||++....... .....++|++++
T Consensus 122 ~~~~~g~~i~~~~~~i~~-~GDt~~~~~~~~--~~~~~~~D~~~~ 163 (228)
T PRK00685 122 LGNPTGFVITFEGKTIYH-AGDTGLFSDMKL--IGELHKPDVALL 163 (228)
T ss_pred CCCceEEEEEECCeEEEE-ecCccchhHHHH--HHHhhCCCEEEE
Confidence 589999999999999 999875432111 111246899998
No 20
>PRK04286 hypothetical protein; Provisional
Probab=99.35 E-value=6.2e-12 Score=126.33 Aligned_cols=194 Identities=15% Similarity=0.020 Sum_probs=108.4
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|++.+||++......+|++|+.++.+||+|+|..+.....-.|. .|.. . ..+...
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~-------~~~~-----~----------~~~~~~--- 55 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPP-------HPIE-----L----------ERLEEV--- 55 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCC-------cchh-----H----------HHHHHH---
Confidence 89999998732223599999999999999999776432100000 0000 0 000000
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhcc---ccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTR---MEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEES 155 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~---~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~ 155 (498)
+ ........+||+|||||. ||++++..+.- ...+..+||++.++..... .+.+.....+
T Consensus 56 ---~-~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~~~~~~~---~~~~~~~~~~--------- 119 (298)
T PRK04286 56 ---R-EKILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVLIKDP---TENINWSQRR--------- 119 (298)
T ss_pred ---H-HHhhcccccCCEEEecCCccccCCCccccccccccccchHHHhcCceecccCH---HHHcCHHHHh---------
Confidence 0 011235668999999999 99977655421 0123468888877752110 0000000000
Q ss_pred CCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEE-ecCCCCc--cEE
Q 010890 156 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIG--ACN 232 (498)
Q Consensus 156 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~-~aGH~lG--s~~ 232 (498)
. . . .+...+... .....+..++.+.+ ++++|++. +..|... +++
T Consensus 120 --------------~-----------~----~--~~~~~v~~~-~~~~~~~~g~~~~i-g~~~V~~~~~v~H~~~~~~~G 166 (298)
T PRK04286 120 --------------R-----------A----P--RFLKAVKDI-AKKIEYADGKTFRF-GGTTIEFSPPVPHGADGSKLG 166 (298)
T ss_pred --------------h-----------H----H--hHHHHHHhc-CCceEECCCCEEEE-CCEEEEEeccCCCCCCCCccc
Confidence 0 0 0 001111111 12344566888999 79999966 7889532 444
Q ss_pred ----EEEEeCCeEEEEecCCCC-CCCCCCCCcccCC--CCCCEEEEc
Q 010890 233 ----WIISGAKGNIAYISGSNF-ASGHAMDFDYRAI--QGSDLILYS 272 (498)
Q Consensus 233 ----~~I~~~~~~ivY~TgD~~-~~~~~~~~~~~~~--~~~D~LI~~ 272 (498)
++|+.++++++| +||++ ...... .+.+ .++|+|+++
T Consensus 167 y~i~~ri~~gg~~~~~-~gDt~~~~~~~~---~~~l~~~d~dlLi~~ 209 (298)
T PRK04286 167 YVIMVRISDGDESFVF-ASDVQGPLNDEA---VEFILEKKPDVVIIG 209 (298)
T ss_pred eEEEEEEEeCCEEEEE-ECCCCCCCCHHH---HHHHhcCCCCEEEeC
Confidence 466788999999 99997 221111 1122 389999994
No 21
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.32 E-value=3.1e-12 Score=119.78 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=85.8
Q ss_pred CcccEEEecCC--CCCCccchhcccc-CCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRME-GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~-g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
.+||+|||||. ||++||+.|.... ....+||++..+.+..... ...... +
T Consensus 28 ~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~---~~~~~~---------------~--------- 80 (194)
T PF12706_consen 28 PDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREY---KFGILD---------------L--------- 80 (194)
T ss_dssp GCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHH---HHTHHT---------------T---------
T ss_pred CCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhh---hccccc---------------c---------
Confidence 48999999999 9999988888732 1122999999887765422 000000 0
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEE----EEEEeCCeEEEEe
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN----WIISGAKGNIAYI 245 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~----~~I~~~~~~ivY~ 245 (498)
.. .... ..+..+..++.+++ ++++|+++++.|..++++ |+|+.++++|+|
T Consensus 81 -----------~~----~~~~---------~~~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~- 134 (194)
T PF12706_consen 81 -----------YP----EEDN---------FDIIEISPGDEFEI-GDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFY- 134 (194)
T ss_dssp -----------CC----TTSG---------EEEEEECTTEEEEE-TTEEEEEEEEESSSCCEEECCEEEEEETTEEEEE-
T ss_pred -----------cc----cccc---------eeEEEeccCceEEe-ceEEEEEEeccccccccccCceEEEecCCcceEE-
Confidence 00 0000 24667777888999 899999999999999988 999999999999
Q ss_pred cCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 246 SGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 246 TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
|||+.. + .+.++++|++|+
T Consensus 135 ~gD~~~--~-----~~~~~~~D~li~ 153 (194)
T PF12706_consen 135 SGDTNY--D-----FEELKNIDLLIL 153 (194)
T ss_dssp ETSSSS--C-----HHHHTTBSEEEE
T ss_pred eeccch--h-----hhhhccCCEEEE
Confidence 999976 1 233478999999
No 22
>PRK02126 ribonuclease Z; Provisional
Probab=99.31 E-value=1.5e-11 Score=125.24 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=55.3
Q ss_pred CCCeEEEEEC--CEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccccccccccccc
Q 010890 14 FPPCHILNVS--GFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (498)
Q Consensus 14 g~sc~ll~~~--~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~ 91 (498)
.-+|++|..+ +..+|+|||. ...+. . ..
T Consensus 15 ~dn~~~l~~~~~~~~iLiD~G~-~~~l~------------------------------------~-------------~~ 44 (334)
T PRK02126 15 DDPGLYVDFLFERRALLFDLGD-LHHLP------------------------------------P-------------RE 44 (334)
T ss_pred CCcEEEEEECCCCeEEEEcCCC-HHHHh------------------------------------h-------------cC
Confidence 5799999974 7999999998 32100 0 13
Q ss_pred CCcccEEEecCC--CCCCccchhcccc-C--CceeEEEehHHHHHHHHHH
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRME-G--FSAKIYITEAAARIGQLMM 136 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~-g--~~~~Iy~T~pT~~l~~~~l 136 (498)
..+||+|||||. ||++|+|.|.+.. + -..+||+.+.|.++.+..+
T Consensus 45 ~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~ 94 (334)
T PRK02126 45 LLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKL 94 (334)
T ss_pred CCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHh
Confidence 558999999999 9999999998742 1 1469999999988765544
No 23
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=123.09 Aligned_cols=87 Identities=26% Similarity=0.318 Sum_probs=63.6
Q ss_pred CeEEecCCCCCCCC----CCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccc
Q 010890 1 MKFTCLCQGGGFNF----PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (498)
Q Consensus 1 m~i~~lGg~~~~vg----~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 76 (498)
|+|++||.+|+.++ .+.++|+.++..+|+|||.+.... |..
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~-----------------------------------l~~ 46 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQ-----------------------------------LLR 46 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHH-----------------------------------HHH
Confidence 89999999865443 678999999999999999884321 000
Q ss_pred cccccccccccccccCCcccEEEecCC--CCCCccchhccccCC---c--eeEEEehHHHHHHH
Q 010890 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGF---S--AKIYITEAAARIGQ 133 (498)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~---~--~~Iy~T~pT~~l~~ 133 (498)
..+...+||+|||||. ||+.|||-|.....+ . ..||.....++...
T Consensus 47 -----------~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~ 99 (292)
T COG1234 47 -----------AGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVE 99 (292)
T ss_pred -----------hcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhh
Confidence 1234558999999999 999999977664322 2 47888877775433
No 24
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.22 E-value=2.7e-11 Score=111.72 Aligned_cols=140 Identities=19% Similarity=0.155 Sum_probs=94.7
Q ss_pred CCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccccccccccccc
Q 010890 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (498)
Q Consensus 12 ~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~ 91 (498)
+.+++|++++.++..||+|||..... . .+ ..... ..
T Consensus 3 ~~~~~~~li~~~~~~iliD~g~~~~~---------~-------------------------~~-~~l~~---------~~ 38 (183)
T smart00849 3 GVGVNSYLVEGDGGAILIDTGPGEAE---------D-------------------------LL-AELKK---------LG 38 (183)
T ss_pred ccceeEEEEEeCCceEEEeCCCChhH---------H-------------------------HH-HHHHH---------cC
Confidence 45799999999999999999965321 0 00 00000 12
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
..+||+|+|||. ||++|++.+.+. .+.+||+++.+.+..+..... .. .
T Consensus 39 ~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~~~~~~~~~----~~------------------------~ 88 (183)
T smart00849 39 PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAELLKDLLKL----GG------------------------A 88 (183)
T ss_pred chhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhHHHhccchh----cc------------------------c
Confidence 558999999999 999999999983 578999988876543221110 00 0
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEeCCeEEEEecCC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGS 248 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~~~~ivY~TgD 248 (498)
+. .. .... ..+..+..++++++ ++.+++++++ ||..|++++.++ +++++| +||
T Consensus 89 ~~---------~~--~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~--~~~vl~-~gD 142 (183)
T smart00849 89 LG---------AE--APPP-----------PPDRTLKDGEELDL-GGLELEVIHTPGHTPGSIVLYLP--EGKILF-TGD 142 (183)
T ss_pred cC---------cC--CCCC-----------ccceecCCCCEEEe-CCceEEEEECCCCCCCcEEEEEC--CCCEEE-ECC
Confidence 00 00 0000 24566788899999 5777777766 899999998875 388999 999
Q ss_pred CCC
Q 010890 249 NFA 251 (498)
Q Consensus 249 ~~~ 251 (498)
+..
T Consensus 143 ~~~ 145 (183)
T smart00849 143 LLF 145 (183)
T ss_pred eee
Confidence 854
No 25
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.93 E-value=1.4e-08 Score=104.14 Aligned_cols=68 Identities=21% Similarity=0.135 Sum_probs=50.6
Q ss_pred hhceeecCCCeEEecCCEEEEEEecCC-----------CC-----------ccEEEEEEeCCeEEEEecCCCCCCCCCCC
Q 010890 200 SKVQTLRFGEEACYNGILIIKAFSSGL-----------DI-----------GACNWIISGAKGNIAYISGSNFASGHAMD 257 (498)
Q Consensus 200 ~~i~~v~y~e~~~l~~~~~i~~~~aGH-----------~l-----------Gs~~~~I~~~~~~ivY~TgD~~~~~~~~~ 257 (498)
.+++.++.++.+++ ++++|++++|-| .. .+++|+|+.++++|.| +||++.......
T Consensus 159 ~rv~~v~~Ge~i~i-g~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~-sGDT~~~~~~~~ 236 (355)
T PRK11709 159 ERCIVVKPGDVVKV-KDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYH-SGDSHYSNYFAK 236 (355)
T ss_pred ceEEEecCCCcEEE-CCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEE-eCCCCccHHHHH
Confidence 36788999999999 799999999933 21 2589999999999999 999976422111
Q ss_pred CcccCCCCCCEEEE
Q 010890 258 FDYRAIQGSDLILY 271 (498)
Q Consensus 258 ~~~~~~~~~D~LI~ 271 (498)
.....++|++++
T Consensus 237 --i~~~~~iDvall 248 (355)
T PRK11709 237 --HGNDHQIDVALG 248 (355)
T ss_pred --HHhcCCCCEEEe
Confidence 111125899998
No 26
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.92 E-value=1.3e-08 Score=99.67 Aligned_cols=131 Identities=10% Similarity=-0.007 Sum_probs=85.4
Q ss_pred CCcccEEEecCC--CCCCccchhcccc--C---Cc-eeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchh
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRME--G---FS-AKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 163 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~--g---~~-~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~ 163 (498)
...++.|||||. ||+||||.+.-.. . -+ ..||..+.+.+.. ++++++.+..+..
T Consensus 38 ~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~v----e~~~~~~~~~~~~-------------- 99 (277)
T TIGR02650 38 VAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAE----EETSEFIKAANED-------------- 99 (277)
T ss_pred HhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHH----HHHHHHHHHhhhh--------------
Confidence 458999999999 9999996555411 1 12 3499888777654 3333332211100
Q ss_pred hHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecC---CEEEEEEecCCCC---ccEEEEEE-
Q 010890 164 EELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDI---GACNWIIS- 236 (498)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~---~~~i~~~~aGH~l---Gs~~~~I~- 236 (498)
. .+ + -.+..++.++.+.+.. ...|+++++.|.+ .|.+|.|.
T Consensus 100 ------------------~----~~-~---------~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~ 147 (277)
T TIGR02650 100 ------------------L----FF-F---------FNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEE 147 (277)
T ss_pred ------------------h----cc-C---------cccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEE
Confidence 0 00 0 0245667778777753 4999999999996 56677663
Q ss_pred -------------------------------eCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEcCCCCCCCcccCCC
Q 010890 237 -------------------------------GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQ 285 (498)
Q Consensus 237 -------------------------------~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~ 285 (498)
...++|+| |||+.... .+...+||+||+
T Consensus 148 ~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvy-sGDT~~~~------~~~a~~adlLIh-------------- 206 (277)
T TIGR02650 148 RRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLI-IGDDLAAD------DEEEEGGEELIH-------------- 206 (277)
T ss_pred EeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEE-eCCCCCCC------hHHhcCCCEEEE--------------
Confidence 11368999 99996542 245679999999
Q ss_pred CcccCCCC
Q 010890 286 SSFSDDNN 293 (498)
Q Consensus 286 estyg~~~ 293 (498)
|+||.+..
T Consensus 207 EaTf~d~~ 214 (277)
T TIGR02650 207 ECCFFDDA 214 (277)
T ss_pred eccccccc
Confidence 88886643
No 27
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.85 E-value=1.1e-08 Score=106.88 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=70.3
Q ss_pred cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+..+||+|++||. ||+|+++.|.+.. ...+||+++.+.++.. ...
T Consensus 66 ~~~~Id~IilTH~H~DHiggl~~l~~~~-p~a~V~~~~~~~~~l~----~~~---------------------------- 112 (394)
T PRK11921 66 DLDKIDYIVANHGEIDHSGALPELMKEI-PDTPIYCTKNGAKSLK----GHY---------------------------- 112 (394)
T ss_pred CcccCCEEEeCCCCCchhhHHHHHHHHC-CCCEEEECHHHHHHHH----HHh----------------------------
Confidence 4568999999999 9999999998732 2689999988755321 100
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecC--CCCccEEEEEEeCCeEEEEec
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG--LDIGACNWIISGAKGNIAYIS 246 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aG--H~lGs~~~~I~~~~~~ivY~T 246 (498)
. ..| +++.++.++.+++ ++.+++++.+. |..|++.+.+ ...+++| |
T Consensus 113 -------------~---~~~------------~~~~v~~g~~l~l-G~~~l~~i~tP~~H~p~~~~~y~--~~~~vLF-s 160 (394)
T PRK11921 113 -------------H---QDW------------NFVVVKTGDRLEI-GSNELIFIEAPMLHWPDSMFTYL--TGDNILF-S 160 (394)
T ss_pred -------------C---CCC------------ceEEeCCCCEEee-CCeEEEEEeCCCCCCCCceEEEE--cCCCEEE-e
Confidence 0 011 2456788999999 89999999544 9999988776 4568999 9
Q ss_pred CCC
Q 010890 247 GSN 249 (498)
Q Consensus 247 gD~ 249 (498)
||.
T Consensus 161 gD~ 163 (394)
T PRK11921 161 NDA 163 (394)
T ss_pred cCc
Confidence 997
No 28
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.75 E-value=2.3e-08 Score=91.96 Aligned_cols=145 Identities=19% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccccccccccccc
Q 010890 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (498)
Q Consensus 12 ~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~ 91 (498)
+.+.+||+++.++..||+|||....... . . . . ......
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~~---------------------~------------~-~--~------~~~~~~ 40 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFAK---------------------E------------L-E--L------ALLGIS 40 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHHH---------------------H------------H-H--H------HHHHHT
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhhH---------------------H------------h-h--h------hHhhcc
Confidence 3468999999999999999999854210 0 0 0 0 011235
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
..+|++||+||. ||+||++.+.+. .....+++...................
T Consensus 41 ~~~i~~vi~TH~H~DH~ggl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 93 (194)
T PF00753_consen 41 GEDIDAVILTHAHPDHIGGLPELLEA-GPVVIIYSSADAAKAIRPPDRDSASRR-------------------------- 93 (194)
T ss_dssp GGGEEEEEESSSSHHHHTTHHHHHHH-TTEEEEEEHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred CCCeEEEEECcccccccccccccccc-cceeeeecccccccccccccccccccc--------------------------
Confidence 679999999999 999999999983 323444444444333222211110000
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~ 249 (498)
. .............+.... ++........+|..++..+.+...+++++| |||.
T Consensus 94 ----------------------~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlf-tGD~ 146 (194)
T PF00753_consen 94 ----------------------G---PAVPPPPIIDEDEDDLEI-GGDRILFIIPGPGHGSDSLIIYLPGGKVLF-TGDL 146 (194)
T ss_dssp ----------------------H---HHHESEEEEEETTTEEEE-ETTEEEEEEESSSSSTTEEEEEETTTTEEE-EETT
T ss_pred ----------------------c---cccccccceeeecccccc-cccccccceeccccCCcceEEEeCCCcEEE-eeeE
Confidence 0 000011223334444444 455566666677777777777779999999 9998
Q ss_pred CCC
Q 010890 250 FAS 252 (498)
Q Consensus 250 ~~~ 252 (498)
...
T Consensus 147 ~~~ 149 (194)
T PF00753_consen 147 LFS 149 (194)
T ss_dssp SCT
T ss_pred ecc
Confidence 553
No 29
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.71 E-value=5.6e-08 Score=103.90 Aligned_cols=96 Identities=11% Similarity=-0.022 Sum_probs=71.2
Q ss_pred cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+..+||+|++||. ||+|+++.|.+.. ...+||+++.+..+.. ...
T Consensus 68 ~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-p~a~V~~s~~~~~~l~----~~~---------------------------- 114 (479)
T PRK05452 68 DLADIDYIVINHAEEDHAGALTELMAQI-PDTPIYCTANAIDSIN----GHH---------------------------- 114 (479)
T ss_pred CHhhCCEEEeCCCCcchhchHHHHHHHC-CCCEEEECHHHHHHHH----Hhh----------------------------
Confidence 4568999999999 9999999998732 2689999998865321 100
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec--CCCCccEEEEEEeCCeEEEEec
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a--GH~lGs~~~~I~~~~~~ivY~T 246 (498)
. .+. .+++.++.++.+.+.++.+++++.+ +|..|+..+.++ +.+++| |
T Consensus 115 -------------~--~~~------------~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~vLF-s 164 (479)
T PRK05452 115 -------------H--HPE------------WNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDAVLF-S 164 (479)
T ss_pred -------------c--CCc------------CeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCCEEE-e
Confidence 0 001 1356789999999933577888877 599999988774 568999 9
Q ss_pred CCC
Q 010890 247 GSN 249 (498)
Q Consensus 247 gD~ 249 (498)
||.
T Consensus 165 gD~ 167 (479)
T PRK05452 165 NDA 167 (479)
T ss_pred ccc
Confidence 997
No 30
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.68 E-value=2.3e-07 Score=96.56 Aligned_cols=171 Identities=12% Similarity=0.116 Sum_probs=113.3
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
.+.+=|+||+ ||..||---.. ++++||+.-|+.+....+. +
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~----~p~lYCS~ita~Lv~~~~~----v----------------------------- 154 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS----HPPLYCSPITARLVPLKVS----V----------------------------- 154 (481)
T ss_pred ccceeeeeccccccccccccccc----CCcccccccchhhhhhhcc----c-----------------------------
Confidence 4567899999 99888743222 5679999999887543221 0
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeC-CeEEEEecCCCC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSNF 250 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~-~~~ivY~TgD~~ 250 (498)
.+ ..++.++-+|++.+ .++.|+.++|-|+.|++++..+.. +..+++ |||+.
T Consensus 155 ---------------~~-----------~~i~~l~l~~~~~i-~~~~vt~ldAnHCPGa~mf~F~~~~~~~~lh-tGDFR 206 (481)
T KOG1361|consen 155 ---------------TK-----------QSIQALDLNQPLEI-PGIQVTLLDANHCPGAVMFLFELSFGPCILH-TGDFR 206 (481)
T ss_pred ---------------Ch-----------hhceeecCCCceee-cceEEEEeccccCCCceEEEeecCCCceEEe-cCCcc
Confidence 00 35788999999999 689999999999999999999864 569999 99997
Q ss_pred CCCCCCCCcc-cCC-CCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 010890 251 ASGHAMDFDY-RAI-QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKA 328 (498)
Q Consensus 251 ~~~~~~~~~~-~~~-~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~tl~~ 328 (498)
....- ...+ ... ..+|.+.+ +.||-++... +|+++. .+...++.|..-...
T Consensus 207 ~s~~m-~~~p~~~~~~~i~~lyL--------------DtTycnp~y~-------Fpsq~e-----svq~v~~~i~~~~~~ 259 (481)
T KOG1361|consen 207 ASADM-SKEPALTLEQTIDILYL--------------DTTYCNPKYD-------FPSQEE-----SVQEVVDVIRSHASK 259 (481)
T ss_pred cChhh-hhChHHhcCCccceEEE--------------eecccCCCCC-------CccHHH-----HHHHHHHHHHhhhhh
Confidence 64221 1111 122 56888888 8899876542 233322 222233344444443
Q ss_pred CCe--EEEecCChHH---HHHHHHHHHHHHHhCCCceeEEEE
Q 010890 329 GGS--VLIPINRVGV---FLQLLEQIAIFMECSSLKIPIYII 365 (498)
Q Consensus 329 gG~--VLIPv~~~Gr---~~Ell~~L~~~~~~~~l~~pIy~~ 365 (498)
+-. ++|.++..|+ .+|+...| ..+|++.
T Consensus 260 ~~~~Li~v~~ysiGkE~l~~eia~~l---------~~kI~v~ 292 (481)
T KOG1361|consen 260 NDRVLIVVGTYSIGKEKLLLEIARIL---------NSKIWVE 292 (481)
T ss_pred CCceEEEEEEEecchhHHHHHHHHHh---------CCceEEe
Confidence 333 4556688877 44444444 6788886
No 31
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.55 E-value=5.4e-07 Score=82.34 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=45.2
Q ss_pred hceeecCCCeEEecCCEEEEEEecCCC-------CccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 201 KVQTLRFGEEACYNGILIIKAFSSGLD-------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 201 ~i~~v~y~e~~~l~~~~~i~~~~aGH~-------lGs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
+++.+..++.+++ ++++|+.+++-|. .+.++|+|+.++.+|++ .||.+.... ........++|++++
T Consensus 61 ~~~vv~~~~~~~~-~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~-~Gd~~~~~~--~~~~~~~~~vDvl~~ 134 (163)
T PF13483_consen 61 DIHVVAPGGEYRF-GGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYH-AGDTGFPPD--DEQLKQLGKVDVLFL 134 (163)
T ss_dssp SSEEE-TTEEEEC-TTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE--TT--S-----HHHHHHH-S-SEEEE
T ss_pred ccEEEccceEEEE-eeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEE-ECCCccCCC--HHHHhcccCCCEEEe
Confidence 3566777888999 7999999999874 34799999999999999 999864211 111233468999999
No 32
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.50 E-value=2e-07 Score=89.28 Aligned_cols=87 Identities=25% Similarity=0.271 Sum_probs=64.3
Q ss_pred CeEEecCCCC--CCC-----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccc
Q 010890 1 MKFTCLCQGG--GFN-----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDAND 73 (498)
Q Consensus 1 m~i~~lGg~~--~~v-----g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 73 (498)
|+||+|-... ... -|-+.+||.++.+||+|.|.....++. |
T Consensus 1 mkitvl~dn~~~~~~~f~a~hGfS~LVE~~~~riLFDtG~~~~~ll~--------------------N------------ 48 (259)
T COG1237 1 MKITVLVDNRAGARPGFRAEHGFSALVEDEGTRILFDTGTDSDVLLH--------------------N------------ 48 (259)
T ss_pred CeEEEEEcCCCccCCcccccCceEEEEEcCCeEEEEeCCCCcHHHHH--------------------H------------
Confidence 7788874431 011 266899999999999999988543220 0
Q ss_pred ccccccccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHH
Q 010890 74 LIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAAR 130 (498)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~ 130 (498)
+ ..+++++.+||+|+|||- ||+|||+++.+...-.+|||+.+....
T Consensus 49 a-----------~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 49 A-----------RLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred H-----------HHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 1 224568889999999999 999999999884445789999987755
No 33
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.48 E-value=3.9e-07 Score=89.28 Aligned_cols=83 Identities=14% Similarity=0.290 Sum_probs=63.2
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
.+++||+||. ||+||++.|.+.. ..+||+++.+. +
T Consensus 43 ~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~~------------~----------------------------- 79 (248)
T TIGR03413 43 TLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEER------------I----------------------------- 79 (248)
T ss_pred eeeEEEeCCCCccccCCHHHHHHHC--CCeEEeccccc------------C-----------------------------
Confidence 5899999998 9999999998733 47899886430 0
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEe-cCCCCccEEEEEEeCCeEEEEecCCCC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 250 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~-aGH~lGs~~~~I~~~~~~ivY~TgD~~ 250 (498)
.+ ..+.+..++.+.+ ++.+|+.+. .||..|++++.++ ..+++| |||+-
T Consensus 80 ---------~~------------------~~~~v~~g~~~~~-g~~~i~v~~tpGHT~g~i~~~~~--~~~~lf-tGDtl 128 (248)
T TIGR03413 80 ---------PG------------------ITHPVKDGDTVTL-GGLEFEVLAVPGHTLGHIAYYLP--DSPALF-CGDTL 128 (248)
T ss_pred ---------CC------------------CcEEeCCCCEEEE-CCEEEEEEECCCCCcccEEEEEC--CCCEEE-EcCcc
Confidence 00 1234667888898 788888775 5799999999886 367999 99974
No 34
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.45 E-value=1.1e-06 Score=98.07 Aligned_cols=158 Identities=12% Similarity=0.148 Sum_probs=97.6
Q ss_pred eEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccc
Q 010890 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (498)
Q Consensus 2 ~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 81 (498)
+++++--+ .|.|++++.++..+|+|+|.....- ..+. ..+ .|+.
T Consensus 441 ~v~~lDVG----qGdaili~~~~~~iLIDtG~~~~~~------~~~~-----------------------~~l---~p~L 484 (662)
T TIGR00361 441 QVDMLDVG----QGLAMFIGANGKGILYDTGEPWREG------SLGE-----------------------KVI---IPFL 484 (662)
T ss_pred EEEEEecC----CceEEEEEECCeEEEEeCCCCCCCC------CccH-----------------------HHH---HHHH
Confidence 46666444 3679999999999999999654310 0010 011 2222
Q ss_pred ccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 010890 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (498)
Q Consensus 82 ~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 159 (498)
+ ..... ||+++|||. ||+||++.+.+... -.+||..... .+
T Consensus 485 ~------~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~-v~~i~~~~~~--------~~--------------------- 527 (662)
T TIGR00361 485 T------AKGIK-LEALILSHADQDHIGGAEIILKHHP-VKRLVIPKGF--------VE--------------------- 527 (662)
T ss_pred H------HcCCC-cCEEEECCCchhhhCcHHHHHHhCC-ccEEEeccch--------hh---------------------
Confidence 1 12344 999999999 99999999988322 2356654320 00
Q ss_pred cchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCC------CCccEEE
Q 010890 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL------DIGACNW 233 (498)
Q Consensus 160 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH------~lGs~~~ 233 (498)
.+ ...+.+..|+.+++ ++++++.+..+. --.||.+
T Consensus 528 ---------------------~~-----------------~~~~~~~~G~~~~~-~~~~~~vL~P~~~~~~~~N~~S~vl 568 (662)
T TIGR00361 528 ---------------------EG-----------------VAIEECKRGDVWQW-QGLQFHVLSPEAPDPASKNNHSCVL 568 (662)
T ss_pred ---------------------CC-----------------CceEecCCCCEEeE-CCEEEEEECCCCccCCCCCCCceEE
Confidence 00 01234556777888 688888885432 2357899
Q ss_pred EEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEc
Q 010890 234 IISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (498)
Q Consensus 234 ~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~ 272 (498)
+++.++.++++ |||..........+....-++|+|...
T Consensus 569 ~i~~~~~~~L~-tGD~~~~~E~~l~~~~~~l~~dvLk~~ 606 (662)
T TIGR00361 569 WVDDGGNSWLL-TGDLEAEGEQEVMRVFPNIKADVLQVG 606 (662)
T ss_pred EEEECCeeEEE-ecCCCHHHHHHHHhcccCcCccEEEeC
Confidence 99999999999 999965321111111112368999993
No 35
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.36 E-value=2.1e-06 Score=84.47 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=60.4
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
.|++||+||. ||+||+..|.+... ..+||+.... ..
T Consensus 46 ~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~~----------~~------------------------------- 83 (258)
T PLN02469 46 KIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSLD----------NV------------------------------- 83 (258)
T ss_pred cccEEEecCCCCccccCHHHHHHHCC-CCEEEEechh----------cC-------------------------------
Confidence 7899999999 99999999988322 5799986521 00
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEE-ecCCCCccEEEEEEeC--CeEEEEecCC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIGACNWIISGA--KGNIAYISGS 248 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~-~aGH~lGs~~~~I~~~--~~~ivY~TgD 248 (498)
.+ ..+.+.-++.+.+.+++.++.+ --||..|++.|.+... ..+++| |||
T Consensus 84 ---------~~------------------~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lF-tGD 135 (258)
T PLN02469 84 ---------KG------------------CTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVF-TGD 135 (258)
T ss_pred ---------CC------------------CCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEE-ecC
Confidence 00 0134566788888323555544 3599999999988642 346999 999
Q ss_pred C
Q 010890 249 N 249 (498)
Q Consensus 249 ~ 249 (498)
+
T Consensus 136 t 136 (258)
T PLN02469 136 T 136 (258)
T ss_pred c
Confidence 6
No 36
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.28 E-value=1.1e-07 Score=102.08 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=49.7
Q ss_pred CCEEEEEEecCCCCccEEEEEEeC-CeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCC
Q 010890 215 GILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN 293 (498)
Q Consensus 215 ~~~~i~~~~aGH~lGs~~~~I~~~-~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~ 293 (498)
+...|...++-|+.-|++..|..+ +.||+| |||+.++.... +...++|+||. |+|.-+..
T Consensus 594 ~l~~i~tc~viHCp~syg~~i~~~~~~Ki~Y-SGDTrP~~~~v----~~g~datlLIH--------------EAT~ED~l 654 (746)
T KOG2121|consen 594 GLESIQTCPVIHCPQSYGCSITHGSGWKIVY-SGDTRPCEDLV----KAGKDATLLIH--------------EATLEDDL 654 (746)
T ss_pred CceeEEecCcEecChhhceeEecccceEEEE-cCCCCCchhHh----hhccCCceEEe--------------ehhhchhH
Confidence 688999999999999999999875 589999 99997654332 34578999999 89987654
Q ss_pred c
Q 010890 294 N 294 (498)
Q Consensus 294 ~ 294 (498)
+
T Consensus 655 ~ 655 (746)
T KOG2121|consen 655 E 655 (746)
T ss_pred H
Confidence 4
No 37
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.26 E-value=2.8e-06 Score=86.71 Aligned_cols=131 Identities=16% Similarity=0.060 Sum_probs=94.0
Q ss_pred CCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccccccccccccc
Q 010890 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (498)
Q Consensus 12 ~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~ 91 (498)
.++-|+||+. ++..+|+|-+-.--. ..| + .... ..++
T Consensus 33 GttyNSYLI~-~~k~aLID~~~~~~~-~~~--------------------------------l-~~l~--------~~id 69 (388)
T COG0426 33 GTTYNSYLIV-GDKTALIDTVGEKFF-DEY--------------------------------L-ENLS--------KYID 69 (388)
T ss_pred CceeeeEEEe-CCcEEEECCCCcchH-HHH--------------------------------H-HHHH--------hhcC
Confidence 3578999999 999999998855211 000 0 1111 1247
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
+.+||.|+++|. ||+|+||.|.+ .--+.+|+||...+++.+.+..+
T Consensus 70 ~k~iDYIi~~H~ePDhsg~l~~ll~-~~p~a~ii~s~~~~~~L~~~~~~------------------------------- 117 (388)
T COG0426 70 PKEIDYIIVNHTEPDHSGSLPELLE-LAPNAKIICSKLAARFLKGFYHD------------------------------- 117 (388)
T ss_pred hhcCeEEEECCCCcchhhhHHHHHH-hCCCCEEEeeHHHHHHHHHhcCC-------------------------------
Confidence 789999999999 99999999998 33389999999988875543211
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec--CCCCccEEEEEEeCCeEEEEecC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYISG 247 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a--GH~lGs~~~~I~~~~~~ivY~Tg 247 (498)
+ ..++.++-|+.+.+ ||-+++++++ =|.+|+...-. ...+|+| |+
T Consensus 118 --------------------~---------~~~~ivk~Gd~ldl-Gg~tL~Fi~ap~LHWPd~m~TYd--~~~kILF-S~ 164 (388)
T COG0426 118 --------------------P---------EWFKIVKTGDTLDL-GGHTLKFIPAPFLHWPDTMFTYD--PEDKILF-SC 164 (388)
T ss_pred --------------------c---------cceeecCCCCEecc-CCcEEEEEeCCCCCCCCceeEee--cCCcEEE-cc
Confidence 0 11678899999999 7888888866 56777755432 3467999 99
Q ss_pred CCC
Q 010890 248 SNF 250 (498)
Q Consensus 248 D~~ 250 (498)
|.+
T Consensus 165 D~f 167 (388)
T COG0426 165 DAF 167 (388)
T ss_pred ccc
Confidence 984
No 38
>PRK11539 ComEC family competence protein; Provisional
Probab=98.25 E-value=3.5e-06 Score=95.17 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=94.3
Q ss_pred eEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccc
Q 010890 2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY 81 (498)
Q Consensus 2 ~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 81 (498)
+++++--+ .|.|++++.++..+|+|+|..... +. .+. +.+ .|+.
T Consensus 502 ~v~~lDVG----qG~a~li~~~~~~lLiDtG~~~~~---~~---~~~-----------------------~~i---~P~L 545 (755)
T PRK11539 502 RVDMLDVG----HGLAVVIERNGKAILYDTGNAWPT---GD---SAQ-----------------------QVI---IPWL 545 (755)
T ss_pred EEEEEEcc----CceEEEEEECCEEEEEeCCCCCCC---Cc---chH-----------------------HHH---HHHH
Confidence 56666544 367999999999999999976431 00 000 111 2222
Q ss_pred ccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 010890 82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ 159 (498)
Q Consensus 82 ~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 159 (498)
+ .... ++|.|+|||. ||+||++.+.+... ..+||.+....
T Consensus 546 ~------~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~~-~~~i~~~~~~~------------------------------ 587 (755)
T PRK11539 546 R------WHGL-TPEGIILSHEHLDHRGGLASLLHAWP-MAWIRSPLNWA------------------------------ 587 (755)
T ss_pred H------HcCC-CcCEEEeCCCCcccCCCHHHHHHhCC-cceeeccCccc------------------------------
Confidence 1 1133 5999999999 99999999988322 35666532000
Q ss_pred cchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEE-ecCCC-----CccEEE
Q 010890 160 WMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLD-----IGACNW 233 (498)
Q Consensus 160 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~-~aGH~-----lGs~~~ 233 (498)
.......|+.++. ++++++.+ |.+|. -+||.+
T Consensus 588 -----------------------------------------~~~~~~~g~~~~~-~~~~~~vL~P~~~~~~~~N~~S~Vl 625 (755)
T PRK11539 588 -----------------------------------------NHLPCVRGEQWQW-QGLTFSVHWPLEQSNDAGNNDSCVI 625 (755)
T ss_pred -----------------------------------------CcccccCCCeEeE-CCEEEEEEecCcccCCCCCCccEEE
Confidence 0001224566666 67777766 33443 358999
Q ss_pred EEEeCCeEEEEecCCCCCCCCCCCCc-ccCCCCCCEEEEc
Q 010890 234 IISGAKGNIAYISGSNFASGHAMDFD-YRAIQGSDLILYS 272 (498)
Q Consensus 234 ~I~~~~~~ivY~TgD~~~~~~~~~~~-~~~~~~~D~LI~~ 272 (498)
+++.++.++++ |||........... ....-++|+|...
T Consensus 626 ~i~~~~~~~Ll-tGDi~~~~E~~Ll~~~~~~l~~dvL~vp 664 (755)
T PRK11539 626 RVDDGKHSILL-TGDLEAQAEQKLLSRYWQQLAATLLQVP 664 (755)
T ss_pred EEEECCEEEEE-EeCCChHHHHHHHhcCccCcCCCEEEeC
Confidence 99999999999 99996532211111 1112268999983
No 39
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.21 E-value=3.9e-06 Score=82.38 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=59.2
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
++++||+||. ||+||+..|.+..+ ..+||+...+..
T Consensus 45 ~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~~~~~----------------------------------------- 82 (251)
T PRK10241 45 QPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQETQD----------------------------------------- 82 (251)
T ss_pred ccCEEEeCCCCchhhccHHHHHHHCC-CCEEEecccccc-----------------------------------------
Confidence 5689999998 99999999988432 578998643200
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEe-cCCCCccEEEEEEeCCeEEEEecCCCC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 250 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~-aGH~lGs~~~~I~~~~~~ivY~TgD~~ 250 (498)
.+ ..+.+.-++.+.+ ++.+++.+. .||..|...+.. ..++| |||+-
T Consensus 83 ---------~~------------------~~~~v~~g~~i~i-g~~~~~vi~tPGHT~ghi~~~~----~~~lF-tGDtl 129 (251)
T PRK10241 83 ---------KG------------------TTQVVKDGETAFV-LGHEFSVFATPGHTLGHICYFS----KPYLF-CGDTL 129 (251)
T ss_pred ---------cC------------------CceEeCCCCEEEe-CCcEEEEEEcCCCCccceeeec----CCcEE-EcCee
Confidence 00 1234566788888 677777764 789999999964 25799 99973
No 40
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.20 E-value=9e-06 Score=82.40 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=63.2
Q ss_pred CcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhch
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (498)
.+|++||+||. ||+||+..|.+.. ..+||++....+. +
T Consensus 120 ~~L~~ILlTH~H~DH~GG~~~L~~~~--ga~V~g~~~~~~~--------i------------------------------ 159 (329)
T PLN02398 120 RNLTYILNTHHHYDHTGGNLELKARY--GAKVIGSAVDKDR--------I------------------------------ 159 (329)
T ss_pred CCceEEEECCCCchhhCCHHHHHHhc--CCEEEEehHHhhh--------c------------------------------
Confidence 37899999998 9999999998843 5899998643210 0
Q ss_pred hhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEe-cCCCCccEEEEEEeCCeEEEEecCCC
Q 010890 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSN 249 (498)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~-aGH~lGs~~~~I~~~~~~ivY~TgD~ 249 (498)
.+ --+.+.-++.+.+ ++.+++.+. -||..|..+|.+. +.+++| |||+
T Consensus 160 ----------~~------------------~d~~v~dGd~i~l-gg~~l~vi~tPGHT~GhI~~~~~--~~~vLF-tGDt 207 (329)
T PLN02398 160 ----------PG------------------IDIVLKDGDKWMF-AGHEVLVMETPGHTRGHISFYFP--GSGAIF-TGDT 207 (329)
T ss_pred ----------cC------------------CcEEeCCCCEEEE-CCeEEEEEeCCCcCCCCEEEEEC--CCCEEE-ECCC
Confidence 00 0134567888888 687887764 4999999999764 356899 9997
Q ss_pred C
Q 010890 250 F 250 (498)
Q Consensus 250 ~ 250 (498)
-
T Consensus 208 L 208 (329)
T PLN02398 208 L 208 (329)
T ss_pred c
Confidence 4
No 41
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.16 E-value=3.3e-06 Score=83.78 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=33.1
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHH
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIG 132 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~ 132 (498)
++.+|+||+||. ||+.|++.|.+ ++..++|++..|...+
T Consensus 60 ~~~idai~~TH~H~DHi~Gl~~l~~--~~~~~~~~~~~~~~~~ 100 (269)
T COG1235 60 VSDLDAILLTHEHSDHIQGLDDLRR--AYTLPIYVNPGTLRAS 100 (269)
T ss_pred ccccCeEEEecccHHhhcChHHHHH--HhcCCcccccceeccc
Confidence 468999999999 99999999998 6678888888775543
No 42
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.13 E-value=6.5e-06 Score=79.36 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=35.0
Q ss_pred ceeecCCCeEEecCC--EEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCC
Q 010890 202 VQTLRFGEEACYNGI--LIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA 251 (498)
Q Consensus 202 i~~v~y~e~~~l~~~--~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~~ 251 (498)
...+..++.+.+ ++ +++...+ ||..|+..|.++.++ ++| +||.-.
T Consensus 124 ~~~~~~~~~~~~-~~~~~~~i~tp-GHT~g~~~~~~~~~~--~l~-~gD~~~ 170 (252)
T COG0491 124 LRALEDGDELDL-GGLELEVLHTP-GHTPGHIVFLLEDGG--VLF-TGDTLF 170 (252)
T ss_pred ceecCCCCEEEe-cCeEEEEEECC-CCCCCeEEEEECCcc--EEE-ecceec
Confidence 344556778888 55 7777778 999999999998655 899 999743
No 43
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.01 E-value=7.9e-05 Score=73.39 Aligned_cols=66 Identities=18% Similarity=0.080 Sum_probs=47.1
Q ss_pred hceeecCCCeEEecCCEEEEEEecCCC-------------CccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCC
Q 010890 201 KVQTLRFGEEACYNGILIIKAFSSGLD-------------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSD 267 (498)
Q Consensus 201 ~i~~v~y~e~~~l~~~~~i~~~~aGH~-------------lGs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D 267 (498)
+++.+.+++.+++ ++++|++.++-|. .+.++|+|+.++.+|.+ .||++. ... ........+|
T Consensus 101 ~~~~~~~~~~~~~-~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh-~GDt~~-~~~--~~~~~~~~~D 175 (258)
T COG2220 101 RVHELGWGDVIEL-GDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYH-AGDTGY-LFL--IIEELDGPVD 175 (258)
T ss_pred eEEeecCCceEEe-cCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEe-ccCccH-HHH--hhhhhcCCcc
Confidence 5778889999999 7888877766553 23678999999999888 999976 111 1111223389
Q ss_pred EEEE
Q 010890 268 LILY 271 (498)
Q Consensus 268 ~LI~ 271 (498)
++++
T Consensus 176 vall 179 (258)
T COG2220 176 VALL 179 (258)
T ss_pred EEEe
Confidence 9998
No 44
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.95 E-value=0.00038 Score=66.41 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=43.1
Q ss_pred eecCCCeEEecCCEEEEEE-ecCCCC-----cc-EEEEEEeCCeEEEEecCCC-CCCCCCCCCcccCCCCCCEEEEcC
Q 010890 204 TLRFGEEACYNGILIIKAF-SSGLDI-----GA-CNWIISGAKGNIAYISGSN-FASGHAMDFDYRAIQGSDLILYSD 273 (498)
Q Consensus 204 ~v~y~e~~~l~~~~~i~~~-~aGH~l-----Gs-~~~~I~~~~~~ivY~TgD~-~~~~~~~~~~~~~~~~~D~LI~~~ 273 (498)
...-++.+++ |+.+|++- +.-|.. |- .++.|+.++.+|+| +.|. |..... ..+.-.-..+|++|+++
T Consensus 135 e~ADgk~f~f-G~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~f-aSDvqGp~~~~-~l~~i~e~~P~v~ii~G 209 (304)
T COG2248 135 EYADGKTFEF-GGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVF-ASDVQGPINDE-ALEFILEKRPDVLIIGG 209 (304)
T ss_pred EecCCceEEe-CCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEE-cccccCCCccH-HHHHHHhcCCCEEEecC
Confidence 3456788999 89999986 445543 33 35677788899999 8887 442211 11111225799999953
No 45
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.94 E-value=7e-05 Score=74.61 Aligned_cols=121 Identities=13% Similarity=0.238 Sum_probs=75.2
Q ss_pred ccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHh
Q 010890 90 WNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (498)
Q Consensus 90 ~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (498)
..+.+||.+++||+ ||+||++-+.+...+ ..+|+..+...-....+++
T Consensus 86 ~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v-~~~~i~~~~~~~~~~~~~~----------------------------- 135 (293)
T COG2333 86 LGVRKLDQLILTHPDADHIGGLDEVLKTIKV-PELWIYAGSDSTSTFVLRD----------------------------- 135 (293)
T ss_pred cCCccccEEEeccCCccccCCHHHHHhhCCC-CcEEEeCCCCccchhhhhh-----------------------------
Confidence 36779999999999 999999999984443 2344443321100000100
Q ss_pred hchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEE-ecCCC-----CccEEEEEEeCCeE
Q 010890 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLD-----IGACNWIISGAKGN 241 (498)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~-~aGH~-----lGs~~~~I~~~~~~ 241 (498)
.+ ..+....-|+...+ +++.++.+ |.+.. --||..+++.++.+
T Consensus 136 -------------~~-----------------~~~~~~~~G~~~~~-~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s 184 (293)
T COG2333 136 -------------AG-----------------IPVRSCKAGDSWQW-GGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNS 184 (293)
T ss_pred -------------cC-----------------CceeccccCceEEE-CCeEEEEEcCCccccccccCcceEEEEEeCCee
Confidence 00 12344556788888 68888876 44343 25799999999999
Q ss_pred EEEecCCCCCCCCCCCCcccCCCCCCEEEEc
Q 010890 242 IAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (498)
Q Consensus 242 ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~ 272 (498)
+++ |||..........+.-.--.+|+|...
T Consensus 185 ~Ll-TGD~e~~~E~~l~~~~~~l~~dVLkV~ 214 (293)
T COG2333 185 FLL-TGDLEEKGEKLLKKYGPDLRADVLKVG 214 (293)
T ss_pred EEE-ecCCCchhHHHHHhhCCCccceEEEec
Confidence 999 999965332211111111258999984
No 46
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.92 E-value=3.1e-05 Score=75.90 Aligned_cols=44 Identities=16% Similarity=0.458 Sum_probs=32.4
Q ss_pred ecCCCeEEecCCEEEEEE-ecCCCCccEEEEEEeC----CeEEEEecCCCC
Q 010890 205 LRFGEEACYNGILIIKAF-SSGLDIGACNWIISGA----KGNIAYISGSNF 250 (498)
Q Consensus 205 v~y~e~~~l~~~~~i~~~-~aGH~lGs~~~~I~~~----~~~ivY~TgD~~ 250 (498)
+.-++.+.+ ++++++.+ --||..|++.|.+..+ ..+++| |||+-
T Consensus 104 l~~g~~i~~-g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lf-tGD~L 152 (251)
T PLN02962 104 VEPGDKIYF-GDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAF-TGDAL 152 (251)
T ss_pred eCCCCEEEE-CCEEEEEEECCCCCcCcEEEEeccCCCCCccceEE-ECCee
Confidence 556788888 67766654 4599999999987532 346999 99963
No 47
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.61 E-value=0.0017 Score=65.92 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=70.3
Q ss_pred CCcccEEEecCC--CCCCccchhcccc-C---CceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhH
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRME-G---FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 165 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~-g---~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~ 165 (498)
...|.+.||||+ ||+.||-.-.... . -+.+||+.+.|.+..+.-+ + +|.-|+.
T Consensus 77 ~~~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hi-------------F--------N~~iWPN 135 (335)
T PF02112_consen 77 RNHIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHI-------------F--------NDIIWPN 135 (335)
T ss_pred HHhhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcc-------------c--------CCccCCC
Confidence 347899999999 9999984333211 0 2568999999977543211 1 2444544
Q ss_pred HhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEec------------CCEEEEEEecCCCCc----
Q 010890 166 LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN------------GILIIKAFSSGLDIG---- 229 (498)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~------------~~~~i~~~~aGH~lG---- 229 (498)
+...... . ... .-++..+++++...+. .+..|++++..|..+
T Consensus 136 l~~~~~~------------~-~~~---------~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~ 193 (335)
T PF02112_consen 136 LSDEGEG------------D-YLY---------KYRYFDLSPGELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSP 193 (335)
T ss_pred CCCcCcc------------c-cee---------eeeeeeccccceeeccccccccccccccccccceeeecCCCCcccCC
Confidence 3321100 0 000 0123333344333221 256788899999754
Q ss_pred --cEEEEEEeCC--eEEEEecCCCCCC
Q 010890 230 --ACNWIISGAK--GNIAYISGSNFAS 252 (498)
Q Consensus 230 --s~~~~I~~~~--~~ivY~TgD~~~~ 252 (498)
|++|.|+.+. +.|+| -||++..
T Consensus 194 ~~SsAfli~~~~t~~~il~-fGD~e~D 219 (335)
T PF02112_consen 194 VYSSAFLIRDNITGDEILF-FGDTEPD 219 (335)
T ss_pred CcceEEEEEeCCCCCEEEE-EeCCCCC
Confidence 7999999764 89999 8999764
No 48
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=96.36 E-value=0.0089 Score=58.35 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=65.5
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
..++++||.||. ||+||+.-|.+..-+...||...+- .
T Consensus 49 ~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~----------r------------------------------ 88 (265)
T KOG0813|consen 49 NRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADD----------R------------------------------ 88 (265)
T ss_pred cCceeEEEeccccccccCcHHHHHhhccCCcEEecCChh----------c------------------------------
Confidence 458999999999 9999999998842345556655300 0
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEE-ecCCCCccEEEEEE-eCCeEEEEecC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDIGACNWIIS-GAKGNIAYISG 247 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~-~aGH~lGs~~~~I~-~~~~~ivY~Tg 247 (498)
.+.+ -+.+..++.+.+ +|++|+.+ --||.-|...|.+. ..+.+.+| ||
T Consensus 89 ---------------~~~i-------------~~~~~~~e~~~~-~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iF-tG 138 (265)
T KOG0813|consen 89 ---------------IPGI-------------TRGLKDGETVTV-GGLEVRCLHTPGHTAGHICYYVTESTGERAIF-TG 138 (265)
T ss_pred ---------------Cccc-------------cccCCCCcEEEE-CCEEEEEEeCCCccCCcEEEEeecCCCCCeEE-eC
Confidence 0011 123678899999 79999987 55999999999987 56788999 99
Q ss_pred CC
Q 010890 248 SN 249 (498)
Q Consensus 248 D~ 249 (498)
|.
T Consensus 139 Dt 140 (265)
T KOG0813|consen 139 DT 140 (265)
T ss_pred Cc
Confidence 97
No 49
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=95.40 E-value=0.0084 Score=54.83 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=54.5
Q ss_pred cCCcccEEEecCCCCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhch
Q 010890 91 NVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (498)
Q Consensus 91 ~~~~ID~IlISH~DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (498)
....++.|+|||.||+.+---+.+ .+..+||....-++.
T Consensus 52 a~ggv~~IvLTn~dHvR~A~~ya~--~~~a~i~~p~~d~~~--------------------------------------- 90 (199)
T PF14597_consen 52 ALGGVAWIVLTNRDHVRAAEDYAE--QTGAKIYGPAADAAQ--------------------------------------- 90 (199)
T ss_dssp HTT--SEEE-SSGGG-TTHHHHHH--HS--EEEEEGGGCCC---------------------------------------
T ss_pred hcCCceEEEEeCChhHhHHHHHHH--HhCCeeeccHHHHhh---------------------------------------
Confidence 456899999999999998877776 456888888643210
Q ss_pred hhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCC
Q 010890 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (498)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~ 249 (498)
.|+ .-=+.+.-|+ ++-+|++|-..+-.|+.|..++.++. ++++ |||.
T Consensus 91 ------------------~p~--------~~D~~l~dge--~i~~g~~vi~l~G~ktpGE~ALlled---~vLi-~GDl 137 (199)
T PF14597_consen 91 ------------------FPL--------ACDRWLADGE--EIVPGLWVIHLPGSKTPGELALLLED---RVLI-TGDL 137 (199)
T ss_dssp -------------------SS----------SEEE-TT---BSSTTEEEEEE-SSSSTTEEEEEETT---TEEE-ESSS
T ss_pred ------------------CCC--------CCccccccCC--CccCceEEEEcCCCCCCceeEEEecc---ceEE-ecce
Confidence 011 0012345555 44489999999988999999999974 5888 9995
No 50
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=93.60 E-value=0.12 Score=39.15 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.9
Q ss_pred CCeEEEEECCEEEEE-eCCCCCc
Q 010890 15 PPCHILNVSGFHVLF-DCPLDLS 36 (498)
Q Consensus 15 ~sc~ll~~~~~~ILl-DcG~~~~ 36 (498)
++|++|.+++.+.|+ +||-...
T Consensus 12 ~p~l~l~~d~~rYlFGn~gEGtQ 34 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNCGEGTQ 34 (63)
T ss_pred CCEEEEEeCCceEEeccCCcHHH
Confidence 499999999999999 9998854
No 51
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=90.04 E-value=0.2 Score=54.54 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=43.3
Q ss_pred EecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccccc
Q 010890 4 TCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKT 83 (498)
Q Consensus 4 ~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 83 (498)
++++|+ -+-.-|..++|++||+|-|..-.+ .-| +
T Consensus 41 YIfpGg----~gdaALFavnGf~iLv~GgserKS----------------------------------------~fw-k- 74 (934)
T KOG3592|consen 41 YIFPGG----RGDAALFAVNGFNILVNGGSERKS----------------------------------------CFW-K- 74 (934)
T ss_pred EECCCC----CCcceeEeecceEEeecCCccccc----------------------------------------chH-H-
Confidence 455665 245677888999999999987321 001 1
Q ss_pred ccccccccCCcccEEEecCC--CCCCccchhcc
Q 010890 84 VNNLHLWNVSFIDVVLISSP--MGMLGLPFLTR 114 (498)
Q Consensus 84 ~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~ 114 (498)
+.....+||+|||||. |.++||.-|++
T Consensus 75 ----lVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 75 ----LVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred ----HHHHHhhhhhhhhcccccCccccchHHHH
Confidence 1125679999999999 99999987776
No 52
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=87.94 E-value=1.9 Score=42.11 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=71.3
Q ss_pred CcccEEEecCC--CCCCccchhcccc--CCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRME--GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~--g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
..|.--+|||+ ||+-||-.=.... .-+..||+..-|.+..+.-.- +|.-|+.+..
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvF---------------------N~lvWP~lt~ 169 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVF---------------------NWLVWPNLTD 169 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHHHhh---------------------cccccCCccc
Confidence 36888999999 9999873322211 124579999988876543221 2555554431
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEec-CCEEEEEEecCCCC--cc----EEEEEEeC--C
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN-GILIIKAFSSGLDI--GA----CNWIISGA--K 239 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~-~~~~i~~~~aGH~l--Gs----~~~~I~~~--~ 239 (498)
.|. .. -+++.++..+...+. -.+++.+|+..|.. |+ +++.+..+ +
T Consensus 170 ------------~gs--~~------------~~~qvv~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~ 223 (356)
T COG5212 170 ------------SGS--GT------------YRMQVVRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSN 223 (356)
T ss_pred ------------ccC--ce------------EEEEEeChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecCCCc
Confidence 110 01 257778877766553 24788999999964 43 67888765 5
Q ss_pred eEEEEecCCCCCC
Q 010890 240 GNIAYISGSNFAS 252 (498)
Q Consensus 240 ~~ivY~TgD~~~~ 252 (498)
+=++| .||..+.
T Consensus 224 ~~f~~-fGDvepD 235 (356)
T COG5212 224 EFFAY-FGDVEPD 235 (356)
T ss_pred ceEEE-ecCCCcc
Confidence 56888 8998653
No 53
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=80.75 E-value=4.4 Score=43.40 Aligned_cols=101 Identities=13% Similarity=0.031 Sum_probs=61.9
Q ss_pred CeEEecCCCCCCCCCCeE-EEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCH-ILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~-ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 79 (498)
.|++++++| .|.|.|. ++++.+. .|||.|-....-. .+ ......|
T Consensus 151 Ikf~p~~aG--hVlgacMf~veiagv-~lLyTGd~sreeD--------rh-----------------------l~aae~P 196 (668)
T KOG1137|consen 151 IKFWPYHAG--HVLGACMFMVEIAGV-RLLYTGDYSREED--------RH-----------------------LIAAEMP 196 (668)
T ss_pred eEEEeeccc--hhhhheeeeeeeceE-EEEeccccchhhc--------cc-----------------------ccchhCC
Confidence 378899954 7888885 5788775 4567886543211 00 0000011
Q ss_pred ccccccccccccCCcccEEEecCC--CCCCccchhccccCCc-----eeEEEehHHHHHHHHHHHHH
Q 010890 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFS-----AKIYITEAAARIGQLMMEEL 139 (498)
Q Consensus 80 ~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~-----~~Iy~T~pT~~l~~~~l~d~ 139 (498)
.. ........++-++-++|. +|.|+++++....--+ .||||...+.+|...+.+.+
T Consensus 197 ~~----~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw 259 (668)
T KOG1137|consen 197 PT----GPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYW 259 (668)
T ss_pred CC----CccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHh
Confidence 10 001112345667777777 9999999998742222 69999999999887765554
No 54
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=78.73 E-value=15 Score=35.80 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=40.4
Q ss_pred eeecCCCeEEec---CCEEEEEEecCCCCcc----------EEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEE
Q 010890 203 QTLRFGEEACYN---GILIIKAFSSGLDIGA----------CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLI 269 (498)
Q Consensus 203 ~~v~y~e~~~l~---~~~~i~~~~aGH~lGs----------~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~L 269 (498)
..+..++..++. +-++|.+.||-|.-+- +.|.+...+.+++| .||+|++......=-+....+|+.
T Consensus 181 ~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfff-aGDTGyc~~~F~~IgerfGpfdLA 259 (343)
T KOG3798|consen 181 TELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFF-AGDTGYCDGEFKKIGERFGPFDLA 259 (343)
T ss_pred eEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceeeeeEEecCCceEEe-cCCCCcccHHHHHHHHhcCCccee
Confidence 334444443332 3477888899886542 56777777777777 999998753211001123347876
Q ss_pred EE
Q 010890 270 LY 271 (498)
Q Consensus 270 I~ 271 (498)
.+
T Consensus 260 ai 261 (343)
T KOG3798|consen 260 AI 261 (343)
T ss_pred ec
Confidence 66
No 55
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=58.27 E-value=22 Score=32.75 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=34.1
Q ss_pred eecCCCeEEecCCEEEEEE-ecCCCCccEEEEEEeCCeEEEEecCCC
Q 010890 204 TLRFGEEACYNGILIIKAF-SSGLDIGACNWIISGAKGNIAYISGSN 249 (498)
Q Consensus 204 ~v~y~e~~~l~~~~~i~~~-~aGH~lGs~~~~I~~~~~~ivY~TgD~ 249 (498)
.++.|+.+++ |++.+... .-||..|+.-|++. +.+.+| |||.
T Consensus 99 ~l~~Gd~i~~-G~~~le~ratPGHT~GC~TyV~~--d~~~aF-TGDa 141 (237)
T KOG0814|consen 99 HLEDGDIIEI-GGLKLEVRATPGHTNGCVTYVEH--DLRMAF-TGDA 141 (237)
T ss_pred ccCCCCEEEE-ccEEEEEecCCCCCCceEEEEec--Ccceee-ecce
Confidence 3678999999 88888877 56999999999874 355889 9985
No 56
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.33 E-value=35 Score=33.97 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=28.3
Q ss_pred CCCeEEecCCEEEEEEecCCCCccEEEEEEe--CCeEEEEecCCCCCC
Q 010890 207 FGEEACYNGILIIKAFSSGLDIGACNWIISG--AKGNIAYISGSNFAS 252 (498)
Q Consensus 207 y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~--~~~~ivY~TgD~~~~ 252 (498)
-++.+++.+++. -+-..||..-+....+.. ...+++| +||....
T Consensus 169 e~~~~~l~~~~~-V~~TpGht~~~isvlv~n~~~~GTv~i-tGDLf~~ 214 (302)
T KOG4736|consen 169 ERPYLKLSPNVE-VWKTPGHTQHDISVLVHNVDLYGTVAI-TGDLFPR 214 (302)
T ss_pred cCCccccCCcee-EeeCCCCCCcceEEEEEeecccceEEE-EeecccC
Confidence 344556633333 345678887777777653 4678999 9998543
No 57
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=29.97 E-value=2.8e+02 Score=31.74 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHH---hcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-----ceeEEEEcccHHHHHHHHHHHHHHH
Q 010890 312 MEKLAFICSCAIDSV---KAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-----KIPIYIISSVAEELLAYTNTIPEWL 383 (498)
Q Consensus 312 ~~~l~~~~~~I~~tl---~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-----~~pIy~~s~~a~~~~~~~~~~~ewl 383 (498)
++-++.+++.+...+ ..||+++-..--+|+.+-.+-.|+.++++..- .-|+++. | +.-+-..++.+..|+
T Consensus 244 ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~-P-~sLv~nWkkEF~KWl 321 (776)
T KOG0390|consen 244 REGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVA-P-SSLVNNWKKEFGKWL 321 (776)
T ss_pred HHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEc-c-HHHHHHHHHHHHHhc
Confidence 446677888888875 56999999999999999999999999999753 6677774 5 466778888899998
Q ss_pred HH
Q 010890 384 CK 385 (498)
Q Consensus 384 ~~ 385 (498)
..
T Consensus 322 ~~ 323 (776)
T KOG0390|consen 322 GN 323 (776)
T ss_pred cc
Confidence 76
No 58
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=27.54 E-value=1e+02 Score=27.55 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHH
Q 010890 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIF 352 (498)
Q Consensus 317 ~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~ 352 (498)
.+|..+.++.++|.+|+|-+..-.+..+|=..|+++
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~ 52 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTF 52 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhcc
Confidence 578999999999999999999999999998888554
No 59
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=25.40 E-value=2.8e+02 Score=27.73 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEecCChH---H----HHHHHHHHHHHHHhCCC--ceeEEEEcccHHHHHHHHHH
Q 010890 313 EKLAFICSCAIDSVKAGGSVLIPINRVG---V----FLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNT 378 (498)
Q Consensus 313 ~~l~~~~~~I~~tl~~gG~VLIPv~~~G---r----~~Ell~~L~~~~~~~~l--~~pIy~~s~~a~~~~~~~~~ 378 (498)
+++..+|+.+.+.++.|.++||-.+... + .+=.+-.+++++.+.++ ++-|++.++-+.++.+++-.
T Consensus 139 ~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~L 213 (287)
T PF04898_consen 139 EALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATL 213 (287)
T ss_dssp HHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHH
Confidence 3667789999999999999999886652 2 22344567778888877 79999999999998888754
No 60
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=24.74 E-value=73 Score=30.09 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHh
Q 010890 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMEC 355 (498)
Q Consensus 317 ~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~ 355 (498)
.+++.+.+.|+.||.++|-++..++.+|++..+...+.+
T Consensus 146 ~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 146 LALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred HHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceE
Confidence 356778889999999999999989999999887665554
No 61
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=20.96 E-value=1.8e+02 Score=25.76 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHH
Q 010890 315 LAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351 (498)
Q Consensus 315 l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~ 351 (498)
+..+|..+.++.++|.+|+|-+..-.++.+|=..|+.
T Consensus 15 ~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~ 51 (142)
T PRK05728 15 EALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWT 51 (142)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcC
Confidence 3457899999999999999999888877777777733
No 62
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=20.76 E-value=7.7e+02 Score=27.65 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=37.9
Q ss_pred CCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCCCCCC-----CC-Ccc--cCCCCCCEEEEc
Q 010890 215 GILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHA-----MD-FDY--RAIQGSDLILYS 272 (498)
Q Consensus 215 ~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~~~~~~-----~~-~~~--~~~~~~D~LI~~ 272 (498)
+-++|+++.++.-+|.+++.|+.++.+|+. |.|..... .+ ++. ..+..+|.+++|
T Consensus 173 ~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILI---DcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlIT 235 (630)
T TIGR03675 173 RWVRVTALGGFREVGRSALLLSTPESRILL---DCGVNVGANGDNAYPYLDVPEFQLDELDAVVIT 235 (630)
T ss_pred CeEEEEEEecCCccCCCEEEEEECCCEEEE---ECCCCccccchhhcccccccCCCHHHCcEEEEC
Confidence 358899999999999999999999888888 55532110 00 010 114568999985
No 63
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=20.62 E-value=6.7e+02 Score=23.08 Aligned_cols=130 Identities=11% Similarity=0.051 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCeEEEec--CChHHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhccC
Q 010890 317 FICSCAIDSVKAGGSVLIPI--NRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSG 394 (498)
Q Consensus 317 ~~~~~I~~tl~~gG~VLIPv--~~~Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~ 394 (498)
.....|.+++++|++||+-- .+..-+|-+..-|-..+...+-..|-+-.+--....+.+.+.
T Consensus 29 ~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~ND---------------- 92 (176)
T COG0279 29 RAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIAND---------------- 92 (176)
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhcc----------------
Confidence 33456778899999988855 222346666555544444433245555544222333333321
Q ss_pred CCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChhhhcCCCcc
Q 010890 395 DPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKP 474 (498)
Q Consensus 395 ~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~~~~~p~~~ 474 (498)
|.+..++.. +....-+...|+++-|-+-........++.=..-.-.+|.|||.- .+-++++-+
T Consensus 93 ---y~yd~vFsR------------qveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~--GG~~~~~~D 155 (176)
T COG0279 93 ---YGYDEVFSR------------QVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKD--GGKLAGLLD 155 (176)
T ss_pred ---ccHHHHHHH------------HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCC--Ccccccccc
Confidence 222232221 222223444566665545344555555555333334666688642 344556656
Q ss_pred cceeE
Q 010890 475 ISMKV 479 (498)
Q Consensus 475 ~~~~~ 479 (498)
+.++|
T Consensus 156 ~~i~V 160 (176)
T COG0279 156 VEIRV 160 (176)
T ss_pred eEEec
Confidence 55544
Done!