Query 010890
Match_columns 498
No_of_seqs 191 out of 2039
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iek_A Ribonuclease TTHA0252; 100.0 3.3E-58 1.1E-62 483.3 35.5 364 1-488 1-380 (431)
2 2i7t_A Cleavage and polyadenyl 100.0 2.7E-51 9.1E-56 434.7 32.6 365 1-488 12-396 (459)
3 2i7x_A Protein CFT2; polyadeny 100.0 4.6E-46 1.6E-50 411.3 32.6 343 1-465 1-372 (717)
4 3af5_A Putative uncharacterize 100.0 1E-45 3.6E-50 406.5 34.2 352 1-466 189-554 (651)
5 2xr1_A Cleavage and polyadenyl 100.0 4.2E-45 1.4E-49 400.8 33.0 349 1-466 184-543 (640)
6 2ycb_A Beta-CAsp RNAse, cleava 100.0 9.2E-45 3.1E-49 398.3 32.0 350 1-466 180-539 (636)
7 3zq4_A Ribonuclease J 1, RNAse 100.0 6.6E-32 2.3E-36 291.2 23.2 306 1-466 9-336 (555)
8 3bk2_A RNAse J, metal dependen 100.0 2.9E-29 1E-33 271.5 26.5 308 1-466 17-351 (562)
9 2az4_A Hypothetical protein EF 99.9 1.7E-24 5.7E-29 227.0 17.7 277 1-376 7-293 (429)
10 4b87_A DNA cross-LINK repair 1 99.9 9.7E-22 3.3E-26 201.4 13.2 174 92-365 49-228 (367)
11 3zdk_A 5' exonuclease apollo; 99.8 1E-20 3.4E-25 191.5 15.7 176 92-366 22-206 (336)
12 1y44_A Ribonuclease Z; zinc-de 99.7 3.4E-18 1.2E-22 171.8 12.1 173 1-293 1-238 (320)
13 2cbn_A Ribonuclease Z; phospho 99.7 7E-18 2.4E-22 168.2 12.5 172 1-292 2-239 (306)
14 1zkp_A Hypothetical protein BA 99.7 2.4E-17 8.1E-22 161.4 11.4 158 1-271 25-198 (268)
15 3g1p_A Protein PHNP; C-P lyase 99.7 1E-17 3.4E-22 163.4 8.1 157 1-271 3-186 (258)
16 3zwf_A Zinc phosphodiesterase 99.7 1.5E-16 5.1E-21 163.2 12.2 90 1-136 1-105 (368)
17 3md7_A Beta-lactamase-like; ss 99.6 5.3E-16 1.8E-20 154.1 8.4 124 91-271 96-229 (293)
18 2e7y_A TRNAse Z; tRNA maturati 99.6 3.1E-15 1.1E-19 146.8 12.4 166 1-292 1-214 (280)
19 3jxp_A Coenzyme PQQ synthesis 99.6 5.8E-16 2E-20 155.9 7.0 161 15-271 41-221 (321)
20 3kl7_A Putative metal-dependen 99.5 5.7E-13 1.9E-17 128.1 16.6 138 1-271 30-180 (235)
21 2r2d_A AGR_PTI_140P, Zn-depend 99.3 1.3E-11 4.4E-16 120.8 14.9 111 89-251 98-216 (276)
22 3m8t_A 'BLR6230 protein; subcl 99.3 7.6E-12 2.6E-16 123.5 10.0 151 3-250 47-204 (294)
23 2wyl_A L-ascorbate-6-phosphate 99.3 4.7E-11 1.6E-15 121.9 15.6 116 92-271 107-247 (360)
24 1ztc_A Hypothetical protein TM 99.3 2.8E-12 9.4E-17 121.8 5.4 152 1-250 13-176 (221)
25 3rpc_A Possible metal-dependen 99.3 4.4E-11 1.5E-15 116.7 14.1 165 1-272 5-190 (264)
26 2xf4_A Hydroxyacylglutathione 99.3 2.6E-12 8.7E-17 120.6 4.9 148 1-250 1-153 (210)
27 1k07_A FEZ-1 beta-lactamase; m 99.3 2.2E-11 7.7E-16 118.4 11.4 154 3-251 17-177 (263)
28 3bv6_A Metal-dependent hydrola 99.2 6.4E-11 2.2E-15 121.8 15.2 116 92-271 131-272 (379)
29 3dha_A N-acyl homoserine lacto 99.2 4E-12 1.4E-16 122.9 5.6 101 89-251 95-198 (254)
30 3esh_A Protein similar to meta 99.2 1.5E-11 5.1E-16 120.9 8.0 161 13-251 46-209 (280)
31 2zwr_A Metallo-beta-lactamase 99.2 2.6E-11 8.9E-16 113.7 7.2 144 1-250 1-146 (207)
32 3l6n_A Metallo-beta-lactamase; 99.2 2.7E-11 9.3E-16 114.3 6.6 128 13-250 29-160 (219)
33 3adr_A Putative uncharacterize 99.1 3.7E-10 1.3E-14 109.3 13.6 159 2-251 5-168 (261)
34 3aj3_A MLR6805 protein, 4-pyri 99.1 6.4E-11 2.2E-15 115.7 6.5 169 15-251 35-210 (274)
35 4efz_A Metallo-beta-lactamase 99.1 4.6E-10 1.6E-14 111.4 12.1 161 1-250 5-176 (298)
36 1vjn_A Zn-dependent hydrolase 99.1 6.1E-10 2.1E-14 105.7 11.2 58 210-271 80-144 (220)
37 1sml_A Protein (penicillinase) 99.0 2E-10 6.7E-15 112.1 6.5 143 14-249 37-185 (269)
38 1p9e_A Methyl parathion hydrol 99.0 5.2E-10 1.8E-14 112.8 9.5 153 15-251 97-258 (331)
39 1m2x_A Class B carbapenemase B 99.0 4.1E-10 1.4E-14 106.6 7.5 128 13-250 25-156 (223)
40 2bib_A CBPE, teichoic acid pho 99.0 3.3E-10 1.1E-14 122.0 7.1 199 1-271 6-226 (547)
41 1e5d_A Rubredoxin\:oxygen oxid 99.0 3.2E-10 1.1E-14 117.0 6.4 96 91-250 68-167 (402)
42 4hl2_A Beta-lactamase NDM-1; s 99.0 1.1E-10 3.7E-15 112.2 1.5 138 12-251 45-184 (243)
43 3tp9_A Beta-lactamase and rhod 99.0 1.4E-10 4.9E-15 122.6 2.5 138 1-250 4-151 (474)
44 2vw8_A PA1000, PQSE; quinolone 99.0 2.7E-09 9.2E-14 105.8 11.5 154 14-250 23-182 (303)
45 4ax1_B Metallo-beta-lactamase 99.0 9.1E-10 3.1E-14 108.7 7.9 145 14-249 57-207 (303)
46 2zo4_A Metallo-beta-lactamase 98.9 1.3E-09 4.3E-14 108.8 8.8 167 14-251 21-193 (317)
47 2gcu_A Putative hydroxyacylglu 98.9 7.4E-10 2.5E-14 106.9 6.5 86 94-251 53-145 (245)
48 2p18_A Glyoxalase II; metallop 98.9 1.8E-09 6.2E-14 107.9 8.2 88 93-250 83-182 (311)
49 1a7t_A Metallo-beta-lactamase; 98.9 1.8E-09 6.2E-14 102.8 7.4 128 14-251 36-167 (232)
50 1mqo_A Beta-lactamase II; alph 98.9 2.7E-09 9.1E-14 101.3 8.4 127 14-250 40-170 (227)
51 2fhx_A SPM-1; metallo-beta-lac 98.9 3E-09 1E-13 102.0 8.1 117 92-251 67-187 (246)
52 3iog_A Beta-lactamase; hydrola 98.9 2.2E-09 7.6E-14 101.4 7.0 88 4-137 13-102 (227)
53 2ohh_A Type A flavoprotein FPR 98.9 2.1E-09 7.1E-14 110.9 7.2 97 91-250 72-172 (404)
54 1qh5_A Glyoxalase II, protein 98.9 1.4E-09 4.6E-14 106.0 5.0 85 94-250 46-136 (260)
55 3q6v_A Beta-lactamase; metallo 98.8 5.1E-09 1.7E-13 99.3 8.1 88 3-136 15-104 (233)
56 2qed_A Hydroxyacylglutathione 98.8 1.9E-09 6.6E-14 104.8 5.1 125 1-250 8-136 (258)
57 3hnn_A Putative diflavin flavo 98.8 1.4E-09 4.8E-14 105.8 2.9 95 91-249 76-175 (262)
58 4dik_A Flavoprotein; TM0755, e 98.8 5.5E-09 1.9E-13 108.2 7.4 93 91-250 86-182 (410)
59 1xm8_A Glyoxalase II; structur 98.8 1.8E-09 6.2E-14 104.7 3.5 85 94-250 46-133 (254)
60 4ad9_A Lactb2, beta-lactamase- 98.8 4.4E-10 1.5E-14 110.8 -0.9 132 14-250 31-167 (289)
61 1ycg_A Nitric oxide reductase; 98.8 4.5E-09 1.5E-13 108.2 6.3 96 91-250 69-168 (398)
62 3r2u_A Metallo-beta-lactamase 98.8 7.8E-09 2.7E-13 109.1 7.6 93 94-251 72-172 (466)
63 2p97_A Hypothetical protein; p 98.7 2.3E-09 7.8E-14 100.0 2.1 119 13-251 22-140 (201)
64 2q9u_A A-type flavoprotein; fl 98.7 2.6E-08 8.8E-13 103.2 8.0 96 91-250 74-173 (414)
65 2y8b_A Metallo-B-lactamase; hy 98.7 1.3E-08 4.4E-13 99.2 5.1 133 13-251 66-200 (265)
66 1jjt_A IMP-1 metallo beta-lact 98.6 1.3E-08 4.6E-13 96.6 3.1 73 13-131 31-105 (228)
67 4eyb_A Beta-lactamase NDM-1; m 98.3 2.3E-07 7.7E-12 90.6 1.9 75 12-131 72-148 (270)
68 2p4z_A Metal-dependent hydrola 98.2 9.9E-07 3.4E-11 86.7 5.0 71 14-129 32-104 (284)
69 2cfu_A SDSA1; SDS-hydrolase, l 98.0 1.2E-05 4.2E-10 88.0 8.9 78 14-132 122-204 (658)
70 2yhe_A SEC-alkyl sulfatase; hy 96.9 5.3E-06 1.8E-10 90.8 0.0 75 15-130 133-212 (668)
71 3h3e_A Uncharacterized protein 97.3 0.00012 4E-09 71.1 3.2 28 96-128 63-92 (267)
72 3evf_A RNA-directed RNA polyme 31.9 2.1E+02 0.0072 27.1 9.3 64 318-381 165-239 (277)
73 2i7t_A Cleavage and polyadenyl 27.2 82 0.0028 31.9 6.1 55 215-272 10-70 (459)
74 3dou_A Ribosomal RNA large sub 26.8 36 0.0012 30.1 2.9 36 317-352 120-155 (191)
75 1ej0_A FTSJ; methyltransferase 25.7 57 0.002 27.1 4.0 38 316-353 116-153 (180)
76 2nyu_A Putative ribosomal RNA 22.8 73 0.0025 27.4 4.2 37 317-353 126-162 (196)
77 2xr1_A Cleavage and polyadenyl 21.2 1.4E+02 0.0047 31.9 6.6 55 215-272 182-244 (640)
78 3gcz_A Polyprotein; flavivirus 20.1 2.9E+02 0.01 26.2 7.9 60 318-377 181-252 (282)
No 1
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=3.3e-58 Score=483.33 Aligned_cols=364 Identities=21% Similarity=0.222 Sum_probs=297.9
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++|||+ +++|+||++|+.++.+||+|||+..+... . ...
T Consensus 1 M~i~~LG~~-~~vg~s~~li~~~~~~iLID~G~~~~~~~---------~--------------------------~~~-- 42 (431)
T 3iek_A 1 MRIVPFGAA-REVTGSAHLLLAGGRRVLLDCGMFQGKEE---------A--------------------------RNH-- 42 (431)
T ss_dssp CEEEECSCS-SSSSCCCEEEEETTEEEEECCCCCCGGGG---------G--------------------------GGG--
T ss_pred CEEEEeCCC-CCCCCcEEEEEECCeEEEEeCCCCcchhh---------c--------------------------cch--
Confidence 999999999 89999999999999999999999533100 0 000
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
....++..+||+|||||+ ||+|+||+|.+ .++++|||+|++|.++++.++.|..++++.
T Consensus 43 -----~~~~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~------------- 103 (431)
T 3iek_A 43 -----APFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGPVYATRATVLLMEIVLEDALKVMDE------------- 103 (431)
T ss_dssp -----SCCSSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHCSS-------------
T ss_pred -----hhcCCCcccCCEEEECCCChHHhccHHHHHH-cCCCCeEEEcHHHHHHHHHHHHHHHhhccc-------------
Confidence 012246779999999999 99999999998 678999999999999999988876543210
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeC
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~ 238 (498)
+.|. .+|+..++.+++.+++++++++ ++++|+++++||++|+++|.|+.+
T Consensus 104 ---------------------------~~y~--~~~~~~~~~~~~~l~~~~~~~l-~g~~v~~~~agH~~Gs~~~~i~~~ 153 (431)
T 3iek_A 104 ---------------------------PFFG--PEDVEEALGHLRPLEYGEWLRL-GALSLAFGQAGHLPGSAFVVAQGE 153 (431)
T ss_dssp ---------------------------CSSC--HHHHHHHHHTEEECCTTCCEEE-TTEEEEEEECCSSTTCEEEEEEET
T ss_pred ---------------------------CCCC--HHHHHHHHhccEEcCCCCeEEe-CCEEEEEEeCCCCcCceEEEEEEC
Confidence 0111 7888888889999999999999 899999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHHHHH
Q 010890 239 KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFI 318 (498)
Q Consensus 239 ~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (498)
+++|+| |||++....+...++....++|+||+ |+||+++.|. .+ .++.++|
T Consensus 154 ~~~ilf-sGD~~~~~~~~l~~~~~~~~~D~LI~--------------EsTy~~~~h~---------~~-----~~~~~~l 204 (431)
T 3iek_A 154 GRTLVY-SGDLGNREKDVLPDPSLPPLADLVLA--------------EGTYGDRPHR---------PY-----RETVREF 204 (431)
T ss_dssp TEEEEE-CCCCCCTTSSSSCCCCBCCCCSEEEE--------------ECTTTTCCCC---------CH-----HHHHHHH
T ss_pred CEEEEE-eCCCCCCCCcccCCccccCCccEEEE--------------EcccCCcCCC---------Ch-----HHHHHHH
Confidence 999999 99998765554445566789999999 9999998774 21 1234567
Q ss_pred HHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 010890 319 CSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPL 397 (498)
Q Consensus 319 ~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~p 397 (498)
++.|.+++++||+||||+|++||+|||+.+|.++|++ + ++|||++||||.+++++|+.+.|||+++.++.+..+++|
T Consensus 205 ~~~i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p 282 (431)
T 3iek_A 205 LEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNP 282 (431)
T ss_dssp HHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSCT
T ss_pred HHHHHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCCC
Confidence 8889999999999999999999999999999999987 6 799999999999999999999999999999988888899
Q ss_pred CcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChhh----------
Q 010890 398 FAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAEL---------- 467 (498)
Q Consensus 398 F~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~~---------- 467 (498)
|.+ .++++..+.++++.++..++||||||++|||++|+++++|+.|+.||+|+||||||+.+.-
T Consensus 283 f~~------~~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~~~ 356 (431)
T 3iek_A 283 FRP------AGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPP 356 (431)
T ss_dssp TCC------TTEEECCSHHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTCCS
T ss_pred CCC------CCeEEeCCHHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcCCc
Confidence 854 2344444455555566678999999999999999999999999999999999998875441
Q ss_pred hcCCC---cccceeEEEccccccc
Q 010890 468 AVLPF---KPISMKVLQCSFLSGK 488 (498)
Q Consensus 468 ~~~p~---~~~~~~~~~~~~~~~~ 488 (498)
.+..+ -+++++|-...-.|+|
T Consensus 357 ~v~~~g~~~~v~a~v~~~~~~saH 380 (431)
T 3iek_A 357 AVRILGEEVPLRASVHTLGGFSGH 380 (431)
T ss_dssp EEEETTEEEECCSEEEECGGGCSS
T ss_pred EEEECCEEEEEEEEEEEECCcccc
Confidence 11112 1267777776555655
No 2
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=2.7e-51 Score=434.68 Aligned_cols=365 Identities=20% Similarity=0.262 Sum_probs=251.5
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++||++ +++|+||++|+.++.+||+|||+.... .+. ...++
T Consensus 12 m~i~~LG~~-~~vg~s~~li~~~~~~iLID~G~~~~~--------~~~---------------------------~~~~~ 55 (459)
T 2i7t_A 12 LLIRPLGAG-QEVGRSCIILEFKGRKIMLDCGIHPGL--------EGM---------------------------DALPY 55 (459)
T ss_dssp EEEEEEESS-SSSSSCEEEEEETTEEEEECCCCCTTS--------CGG---------------------------GGSCC
T ss_pred EEEEEEecC-CCCCCCEEEEEECCeEEEEeCCCCcCc--------ccc---------------------------cccCc
Confidence 789999998 789999999999999999999997431 000 00111
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
. ..++..+||+|||||+ ||+|+||+|....+|++|||+|++|.++.+.++.+..+++...
T Consensus 56 l------~~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~~~~~iy~t~~t~~l~~~~l~d~~~~~~~~------------ 117 (459)
T 2i7t_A 56 I------DLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS------------ 117 (459)
T ss_dssp G------GGSCGGGCCEEECCCSSHHHHTTHHHHHHHSSCCSEEEEEHHHHHHHHHHHHHHCC-----------------
T ss_pred c------cccCcccCcEEEECCCChhhhhhhHHHHHhcCCCCCEEechHHHHHHHHHHHHHHHHhccc------------
Confidence 1 1235679999999999 9999999998767889999999999999888877754332100
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeC
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~ 238 (498)
.. ...|. .+++..+..+++.+++++++++ ++++|+++++||++|+++|.|+.+
T Consensus 118 ----------------------~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~gi~v~~~~~GH~~Gs~~~~i~~~ 170 (459)
T 2i7t_A 118 ----------------------AD--DMLYT--ETDLEESMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIA 170 (459)
T ss_dssp ----------------------------CCC--HHHHHHHGGGEEEECTTCCEEE-TTEEEEEEECCSSTTCEEEEEEET
T ss_pred ----------------------cc--ccccC--HHHHHHHHhccEEeCCCCEEEE-CCEEEEEEeCCCccCcEEEEEEEC
Confidence 00 00111 5667777778999999999999 799999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCCCccc-CCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHHHH
Q 010890 239 KGNIAYISGSNFASGHAMDFDYR-AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAF 317 (498)
Q Consensus 239 ~~~ivY~TgD~~~~~~~~~~~~~-~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (498)
+++|+| |||+............ ...++|+||+ |+||++..|. .++ ++.++
T Consensus 171 ~~~il~-sGD~~~~~~~~~~~~~~~~~~~D~Li~--------------Esty~~~~~~---------~~~-----~~~~~ 221 (459)
T 2i7t_A 171 GVKLLY-TGDFSRQEDRHLMAAEIPNIKPDILII--------------ESTYGTHIHE---------KRE-----EREAR 221 (459)
T ss_dssp TEEEEE-CCSCCCC-----CCCCCCSSCCSEEEE--------------ECTTTTCCCC---------CHH-----HHHHH
T ss_pred CcEEEE-eCCCCCCCCcccCCCCcCCCCCeEEEE--------------CCCCCCCCCC---------ChH-----HHHHH
Confidence 999999 9999765433221111 1358999999 9999987663 211 23345
Q ss_pred HHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhC-CC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 010890 318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS-SL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD 395 (498)
Q Consensus 318 ~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~-~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~ 395 (498)
|++.|.+++++||+|+||+|+.||+|||+.+|+++|+++ .+ .+|||++|++|.+++++|+.+.+||++..++.+. ..
T Consensus 222 l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ 300 (459)
T 2i7t_A 222 FCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN-IN 300 (459)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSHHHHHHHHHHHHHHCGGGTTSCEEEC------------------------------
T ss_pred HHHHHHHHHHCCCEEEEEecchhHHHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhc-cc
Confidence 788899999999999999999999999999999999886 34 7999999999999999999999999998877654 46
Q ss_pred CCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChhhhcC-----
Q 010890 396 PLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVL----- 470 (498)
Q Consensus 396 ~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~~~~~----- 470 (498)
+||.+.. +....+.+ .. ...+||||||++|||++|+++++|+.|+.||+|+|+|+||. .++++.
T Consensus 301 ~p~~~~~------~~~~~~~~---~~-~~~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~-~~gt~g~~l~~ 369 (459)
T 2i7t_A 301 NPFVFKH------ISNLKSMD---HF-DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYC-VEGTLAKHIMS 369 (459)
T ss_dssp ----CCS------EEECCCTT---SS-CCCSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCC-CTTSHHHHHTT
T ss_pred CCcCCCc------ceeeCCHH---Hh-cCCCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecC-CCCChHHHHhh
Confidence 7774311 11111122 12 24689999999999999999999999999999999999885 444321
Q ss_pred -------C---CcccceeEEEccccccc
Q 010890 471 -------P---FKPISMKVLQCSFLSGK 488 (498)
Q Consensus 471 -------p---~~~~~~~~~~~~~~~~~ 488 (498)
. ..++++++-.++ .|+|
T Consensus 370 ~~~~~~~~~g~~~~~~~~v~~~~-~S~H 396 (459)
T 2i7t_A 370 EPEEITTMSGQKLPLKMSVDYIS-FSAH 396 (459)
T ss_dssp CCSEEECTTSCEEECCSEEEECC-CSCC
T ss_pred CCceeeeeCCcEEEEEEEEEEee-eccc
Confidence 1 223688888886 5776
No 3
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=100.00 E-value=4.6e-46 Score=411.35 Aligned_cols=343 Identities=15% Similarity=0.224 Sum_probs=262.4
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|++++|+|+++++++|||+|+.++.+||||||+..... .. + .+ ..+
T Consensus 1 m~~t~L~gg~~ev~~n~~LIe~~~~~ILID~G~~~~~~--------~~----~-------------------~~---l~~ 46 (717)
T 2i7x_A 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKV--------SY----E-------------------QC---IKY 46 (717)
T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTTS--------CH----H-------------------HH---HHH
T ss_pred CEEEEEeecCCCCCCCEEEEEECCeEEEEeCCCCcccc--------hh----h-------------------hH---HHH
Confidence 89999977768999999999999999999999984310 00 0 00 000
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccC----CceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEG----FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEE 154 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g----~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~ 154 (498)
. ..... +||+|||||+ ||+||||+|.+.++ .++|||||++|..+++.++.+.++....
T Consensus 47 L------~~~~~-~IdaVlLTH~H~DHiGgLp~L~~~~~~g~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~--------- 110 (717)
T 2i7x_A 47 W------EKVIP-EIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGV--------- 110 (717)
T ss_dssp H------HTTGG-GCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTS---------
T ss_pred H------HhcCC-CCCEEEECCCChHHHCCHHHHHHhhhhcccCCceEEecchhHHHHHHHHHHHHHhhcc---------
Confidence 0 01123 8999999999 99999999997432 3789999999999999988887543210
Q ss_pred CCCcccchhhHHhhchhhHhhhhccCCCCCCCCC--Cch-HHHHHHHHhhceeecCCCeEEe---cCCEEEEEEecCCCC
Q 010890 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGG--CPC-IAHVKDCISKVQTLRFGEEACY---NGILIIKAFSSGLDI 228 (498)
Q Consensus 155 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l-~~dv~~~~~~i~~v~y~e~~~l---~~~~~i~~~~aGH~l 228 (498)
...| ..+ .+++..++.+++.+.|++++++ .++++|+++++||++
T Consensus 111 ------------------------------~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~ 160 (717)
T 2i7x_A 111 ------------------------------IGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (717)
T ss_dssp ------------------------------SSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred ------------------------------ccccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCC
Confidence 0011 122 6678788888999999999999 368999999999999
Q ss_pred ccEEEEEEeCCeEEEEecCCCCCCCCCCCCcc----------cCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHh
Q 010890 229 GACNWIISGAKGNIAYISGSNFASGHAMDFDY----------RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEEL 298 (498)
Q Consensus 229 Gs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~----------~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~ 298 (498)
|+++|.|+.++++|+| |||++....+..... ..+.++|+||+ |+||++..|.
T Consensus 161 Gs~~~~I~~~~~~Ivy-tGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~--------------EsTy~~~~h~--- 222 (717)
T 2i7x_A 161 GGSIWCISTYSEKLVY-AKRWNHTRDNILNAASILDATGKPLSTLMRPSAIIT--------------TLDRFGSSQP--- 222 (717)
T ss_dssp TCEEEEEECSSCEEEE-CSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEE--------------CCSCCCCSSC---
T ss_pred CcEEEEEEeCCCEEEE-ECCCCCCcccccCccccccccchhHHhccCCcEEEE--------------cCCCCCCCCC---
Confidence 9999999999999999 999976433321111 23568999999 9999987763
Q ss_pred hhccCCCchhHHHHHHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHH-H---hCCC-ceeEEEEcccHHHHH
Q 010890 299 MNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM-E---CSSL-KIPIYIISSVAEELL 373 (498)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~-~---~~~l-~~pIy~~s~~a~~~~ 373 (498)
.. +++.+|++.|.+++++||+||||+|+.||+|||+.+|.++| + ++.+ .+|||++|+++.+++
T Consensus 223 ------~~------~~~~~l~~~i~~~l~~~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~ 290 (717)
T 2i7x_A 223 ------FK------KRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTL 290 (717)
T ss_dssp ------HH------HHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHH
T ss_pred ------CH------HHHHHHHHHHHHHHhCCCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHH
Confidence 11 13446788899999999999999999999999999999998 2 2345 689999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--CCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcC
Q 010890 374 AYTNTIPEWLCKQRQEKLFSGD--PLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 451 (498)
Q Consensus 374 ~~~~~~~ewl~~~~~~~~~~~~--~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~ 451 (498)
++|+.+.+||+...++.+.... .||.+. ..|.+ .+. +.+...++|+||+||+ .+|+++++|++|+.
T Consensus 291 ~i~~~~~e~l~~~~~~~~~~~~~~~pf~~~-----~~l~~-~~~---~~l~~~~~p~VI~aSG---~gG~~~~~L~~~a~ 358 (717)
T 2i7x_A 291 TYAKSMLEWLSPSLLKTWENRNNTSPFEIG-----SRIKI-IAP---NELSKYPGSKICFVSE---VGALINEVIIKVGN 358 (717)
T ss_dssp HHHHTCGGGSCHHHHHHHHSSSSCCTTCCT-----TTEEE-CCG---GGGGGCCSCEEEEEES---CHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhChHHHHHHhcccccCCcccc-----ccCcc-CCH---HHHhhCCCCEEEEECC---CCHHHHHHHHHHcC
Confidence 9999999999988766554433 477621 12222 122 3345567799888876 88999999999999
Q ss_pred CCCceEEEcCCCCh
Q 010890 452 DHNSLLVLENEVDA 465 (498)
Q Consensus 452 ~~~n~Iil~~~~~~ 465 (498)
||+|+|||++|..+
T Consensus 359 ~~~n~VIf~g~~~p 372 (717)
T 2i7x_A 359 SEKTTLILTKPSFE 372 (717)
T ss_dssp CTTEEEEECSSCCT
T ss_pred CCcCEEEEEcCCCC
Confidence 99999999998874
No 4
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=1e-45 Score=406.54 Aligned_cols=352 Identities=19% Similarity=0.256 Sum_probs=272.1
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++||++ +++|+||++|+.++.+||+|||+...... .+. ...+.
T Consensus 189 m~i~~LG~~-~~vg~s~~LI~~~~~~ILID~G~~~~~~~------~g~---------------------------~~l~~ 234 (651)
T 3af5_A 189 IRITGLGGF-REVGRSALLVQTDESFVLVDFGVNVAMLN------DPY---------------------------KAFPH 234 (651)
T ss_dssp EEEEEEECS-SSSSCCEEEEEESSCEEEECCCCCGGGTT------CHH---------------------------HHSCC
T ss_pred eEEEEEecC-CCCCCcEEEEEECCcEEEEeCCCChhccc------cch---------------------------hhccc
Confidence 689999999 78999999999999999999999843200 000 00111
Q ss_pred cccccccccc--cC--CcccEEEecCC--CCCCccchhccccC-CceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 010890 81 YKTVNNLHLW--NV--SFIDVVLISSP--MGMLGLPFLTRMEG-FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAE 153 (498)
Q Consensus 81 ~~~~~~~~~~--~~--~~ID~IlISH~--DH~g~LP~L~~~~g-~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~ 153 (498)
+. ...+ +. .+||+|||||+ ||+||||+|.+ .+ +++|||+|++|..+.+.++.+..++.+..
T Consensus 235 l~----~~~~g~~~~~~~Id~VllTH~H~DHiGglp~L~~-~~~~~~pIy~t~~t~~ll~~~l~d~~~~~~~~------- 302 (651)
T 3af5_A 235 FD----APEFQYVLREGLLDAIIITHAHLDHCGMLPYLFR-YNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSN------- 302 (651)
T ss_dssp TT----CHHHHHHHHTTCCCEEECSCSSHHHHTTHHHHHH-TTCCCSCEEECHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred cc----chhhccCcccCCCCEEEECCCChHhhcCHHHHHh-cCCCCceEEEcHHHHHHHHHHHHHHHHHhhhc-------
Confidence 10 0001 34 78999999999 99999999997 55 78999999999999888888776544310
Q ss_pred CCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEE
Q 010890 154 ESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACN 232 (498)
Q Consensus 154 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~ 232 (498)
+ ...++ .+++..+..+++.+++++++++.++++|+++++||++|+++
T Consensus 303 ----------------------------~----~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~ 350 (651)
T 3af5_A 303 ----------------------------G----QDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAI 350 (651)
T ss_dssp ----------------------------T----CCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEE
T ss_pred ----------------------------c----cCCCCCHHHHHHhhhcEEEeCCCCEEEecCCEEEEEecCCCCcCcEE
Confidence 0 00122 56777777788999999999996689999999999999999
Q ss_pred EEEEeCCe--EEEEecCCCCCCCCCCCCcc-cCCCCCCEEEEcCCCCCCCcccCCCCcccCCCC--chHHhhhccCCCch
Q 010890 233 WIISGAKG--NIAYISGSNFASGHAMDFDY-RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN--NWEELMNSLSNYDE 307 (498)
Q Consensus 233 ~~I~~~~~--~ivY~TgD~~~~~~~~~~~~-~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~--~~~~~~~~~~~~~~ 307 (498)
|.|+.+++ +|+| |||++.......... ....++|+||+ |+||+++. |. ++.
T Consensus 351 ~~i~~~~~~~~ilf-tGD~~~~~~~ll~~~~~~~~~~DvLI~--------------EsT~~~~~~~h~---------s~~ 406 (651)
T 3af5_A 351 VHLHIGNGLHNIAI-TGDFKFIPTRLLEPANAKFPRLETLVM--------------ESTYGGANDIQM---------PRE 406 (651)
T ss_dssp EEEEETTTTTCEEE-CCSCCCSCCSSCCCCCCBCSSCSEEEE--------------ECTTCSTTCCCC---------CHH
T ss_pred EEEEECCCceEEEE-eCCCCCCcccccccccccCCCCCEEEE--------------CCCCCCCCCCCC---------CHH
Confidence 99998888 9999 999987544322111 13568999999 99999876 42 221
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHHHHHHHHHHHHH
Q 010890 308 SVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQR 387 (498)
Q Consensus 308 ~~~~~~~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~ 387 (498)
...++|++.|.+++++||+||||+|++||+|||+.+|.+++.++++.+|||++| ++.+++++|..+.+||+...
T Consensus 407 -----~~~~~l~~~i~~~l~~~g~vlIp~favgR~qell~~l~~~~~~~~l~~~I~~dg-~a~~~~~~~~~~~~~l~~~~ 480 (651)
T 3af5_A 407 -----EAEKRLIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDG-MIWEATAIHTAYPEYLSRRL 480 (651)
T ss_dssp -----HHHHHHHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHHTTTCCCSCEEEES-SHHHHHHHHHTCGGGSCHHH
T ss_pred -----HHHHHHHHHHHHHHhCCCEEEEeccCccHHHHHHHHHHHhhhhcCCCCcEEEec-hHHHHHHHHHHhHHhcCHHH
Confidence 123457788999999999999999999999999999999998877789999987 99999999999999999988
Q ss_pred HHhh-ccCCCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChh
Q 010890 388 QEKL-FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAE 466 (498)
Q Consensus 388 ~~~~-~~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~ 466 (498)
++.+ ....+||.+.. ++...+.++.+......+|+||||+++||++|+++++|++|+.||+|+|||++|+.+.
T Consensus 481 ~~~~~~~~~~~f~~~~------~~~v~~~~~~~~~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~g 554 (651)
T 3af5_A 481 REQIFKEGYNPFLSEI------FHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEG 554 (651)
T ss_dssp HHHTTTSSCCSTTCTT------EEECCSHHHHHHHHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTT
T ss_pred HHHHHhccCCCccCCc------eEEcCCHHHHHHHhcCCCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 7665 45678885422 2222222111222233789999999999999999999999999999999999888764
No 5
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00 E-value=4.2e-45 Score=400.80 Aligned_cols=349 Identities=15% Similarity=0.231 Sum_probs=259.5
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++||++ +++|+||++|+.++.+||+|||+.... + . ...+.
T Consensus 184 m~I~~LG~~-~evg~s~~LI~~~~~~ILID~G~~~~~---------~-~--------------------------~~l~~ 226 (640)
T 2xr1_A 184 VRVTALGGC-KEVGRSCFLLSTPESRILIDCGVNVGS---------D-E--------------------------NMTPY 226 (640)
T ss_dssp CEEEEEECS-SSSBCCEEEEECSSCEEEECCCCBCSS---------C-S--------------------------SCCCC
T ss_pred eEEEEEecC-CCCCCcEEEEEECCeEEEEeCCCCccc---------c-c--------------------------ccccc
Confidence 789999999 789999999999999999999988431 0 0 00111
Q ss_pred cccccccccc-cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 010890 81 YKTVNNLHLW-NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSG 157 (498)
Q Consensus 81 ~~~~~~~~~~-~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~ 157 (498)
+. .... +..+||+|||||+ ||+||||+|.+ .++++|||+|++|..+.+.++.+++++.+..
T Consensus 227 l~----~~~~~~~~~Id~VllTH~H~DHiGgl~~L~~-~~~~~~Iy~t~~t~~ll~~~l~d~~~~~~~~----------- 290 (640)
T 2xr1_A 227 LY----VPEVFPLNQIDAVIVTHAHLDHQGLVPLLFK-YGYEGPVYCTPPTRDLMVLLQLDYIDVAAKE----------- 290 (640)
T ss_dssp TT----STTTCSGGGCCEEECCSSCHHHHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred cc----ccccCCcccCcEEEECCCChhhhccHHHHHh-cCCCCeEEECHHHHHHHHHHHHHHHHHhhhc-----------
Confidence 10 0113 5668999999999 99999999997 4778999999999999888888776544310
Q ss_pred cccchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEE
Q 010890 158 PQWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIIS 236 (498)
Q Consensus 158 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~ 236 (498)
+. . .++ .+++..+..+++.+.+++++++.++++|+++++||++|+++|.|+
T Consensus 291 ------------------------g~-~---~~~~~~~~~~~~~~~~~l~~g~~i~l~gg~~v~~~~~GH~~Gs~~~~i~ 342 (640)
T 2xr1_A 291 ------------------------GK-K---IPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFH 342 (640)
T ss_dssp ------------------------TC-C---CCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEEEEEE
T ss_pred ------------------------cc-C---CCCCHHHHHHHHhceEEeCCCCEEEecCCEEEEEEcCCCCcCcEEEEEE
Confidence 00 0 122 567777777889999999999966899999999999999999999
Q ss_pred eCCe--EEEEecCCCCCCCCCCCCcc-cCCCCCCEEEEcCCCCCCCcccCCCCcccCCCC--chHHhhhccCCCchhHHH
Q 010890 237 GAKG--NIAYISGSNFASGHAMDFDY-RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN--NWEELMNSLSNYDESVEE 311 (498)
Q Consensus 237 ~~~~--~ivY~TgD~~~~~~~~~~~~-~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~--~~~~~~~~~~~~~~~~~~ 311 (498)
.++. +|+| |||++.......... ....++|+||+ |+||++.. |. +..
T Consensus 343 ~~~~~~~ilf-tGD~~~~~~~ll~~~~~~~~~~DvLi~--------------EsT~g~~~~~h~---------s~~---- 394 (640)
T 2xr1_A 343 IGDGLHNVVF-TGDYKYEKTRLFDPAVNKFPRVETVIS--------------EATYGNANAFQP---------ALK---- 394 (640)
T ss_dssp ETTTTEEEEE-CCSCCSSCCSSCCCCCCBCSCCSEEEE--------------ECTTCSTTCCCC---------CHH----
T ss_pred ECCceEEEEE-ECCCCCCCccccccccccCCCCcEEEE--------------CCCCCCCccCCC---------CHH----
Confidence 8887 9999 999976543322111 23468999999 99999876 53 211
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHh
Q 010890 312 MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEK 390 (498)
Q Consensus 312 ~~~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~ 390 (498)
+..++|++.|.++++.||+||||++++||.||++..|.+++.++.+ ++|||++| ++.++++.|..+.+||+...++.
T Consensus 395 -~~~~~l~~~i~~~~~~~g~vlIp~favGR~qell~~l~~~~~~~~~~~~~V~~dg-~a~~~~~~~~~~~~~l~~~~~~~ 472 (640)
T 2xr1_A 395 -DAEKHLQMVVKNTIERGGIAVIPAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDG-MIWEATAIHATHPEYLNNDLRKL 472 (640)
T ss_dssp -HHHHHHHHHC--------CEEEECCTTTHHHHHHHHHHHHHHHTSSCCCCEEEES-SHHHHHHHHHHCGGGSCHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCeEEEEecccchHHHHHHHHHHHHHhCCCCCCcEEEEh-HHHHHHHHHHHhHhhhcHHHHHH
Confidence 1234567888888989999999999999999999999999988877 69999997 99999999999999999988766
Q ss_pred h-ccCCCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChh
Q 010890 391 L-FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAE 466 (498)
Q Consensus 391 ~-~~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~ 466 (498)
+ ....+||.+.. ++...+.++.+.....++|+||||+++||++|+++++|++|+.||+|+|||++|+.+.
T Consensus 473 ~~~~~~~~f~~~~------~~~~~~~~~~~~~~~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~g 543 (640)
T 2xr1_A 473 IFQKGQNPFLSEC------FKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADG 543 (640)
T ss_dssp C------CTTCTT------EEEEC-CHHHHHC----CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTT
T ss_pred HHhcccCcccCCc------eEEeCCHHHHHHHhcCCCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 5 35567885422 2222222111111123789999999999999999999999999999999999888765
No 6
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=9.2e-45 Score=398.27 Aligned_cols=350 Identities=19% Similarity=0.272 Sum_probs=270.8
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++||++ +++|+||++|+.++.+||+|||+..... .+. ...+.
T Consensus 180 m~i~~LG~~-~evg~s~~lI~~~~~~ILID~G~~~~~~-------~~~---------------------------~~~~~ 224 (636)
T 2ycb_A 180 ARLTAMGGF-REVGRSCLYLQTPNSRVLLDCGVNVAGG-------DDK---------------------------NSYPY 224 (636)
T ss_dssp CEEEEEESS-SSSSCCEEEEECSSCEEEEEECCCCSSC-------CHH---------------------------HHSCC
T ss_pred EEEEEEecC-CCCCCCEEEEEECCeEEEEeCCCCcccc-------cch---------------------------hhccc
Confidence 789999999 7899999999999999999999984320 000 00111
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
+ .....+..+||+|||||+ ||+||||+|.+ .++++|||+|++|.++.+.++.+..++.+..
T Consensus 225 l----~~l~~~~~~Id~VlLTH~H~DHiGglp~L~~-~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~------------ 287 (636)
T 2ycb_A 225 L----NVPEFTLDSLDAVIITHAHLDHSGFLPYLYH-YGYDGPVYCTAPTRDLMTLLQLDHIDIAHRE------------ 287 (636)
T ss_dssp T----TSTTCCTTTCCEEECSSSSHHHHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred c----ccccCCcccCcEEEECCCChHHhcCHHHHHh-cCCCCeEEEcchHHHHHHHHHHHHHHhhhhc------------
Confidence 1 001236779999999999 99999999997 4678999999999999888887766543210
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCch-HHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~ 237 (498)
+. . .++ .+++..+..+++.+.+++++++.++++|+++++||++|+++|.|+.
T Consensus 288 -----------------------~~-~---~~~~~~~i~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~ 340 (636)
T 2ycb_A 288 -----------------------DE-P---LPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHI 340 (636)
T ss_dssp -----------------------TC-C---CSCCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECCSSTTCEEEEEEE
T ss_pred -----------------------CC-C---CCCCHHHHHHHHhceEEeCCCCEEEecCCeEEEEeCCCCCCCcEEEEEEE
Confidence 00 0 122 5677777778899999999999669999999999999999999998
Q ss_pred CCe--EEEEecCCCCCCCCCCCCcc-cCCCCCCEEEEcCCCCCCCcccCCCCcccCCCC--chHHhhhccCCCchhHHHH
Q 010890 238 AKG--NIAYISGSNFASGHAMDFDY-RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN--NWEELMNSLSNYDESVEEM 312 (498)
Q Consensus 238 ~~~--~ivY~TgD~~~~~~~~~~~~-~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~--~~~~~~~~~~~~~~~~~~~ 312 (498)
+++ +|+| |||++.......... ....++|+||+ |+||++.. |. ...
T Consensus 341 ~~~~~~ilf-tGD~~~~~~~ll~~~~~~~~~~D~LI~--------------EsT~~~~~~~h~---------s~~----- 391 (636)
T 2ycb_A 341 GDGQHNMVY-TGDFKYEQSRLLEAAANRFPRIETLVM--------------ESTYGGHEDVQP---------SRN----- 391 (636)
T ss_dssp TTTTTCEEE-CCSCCSSCCSSSCCCCCCCSCCSEEEE--------------ECTTCSGGGCCC---------CHH-----
T ss_pred CCCeEEEEE-ECCCCCCcccccCCcccCCCCCeEEEE--------------CCCCCCCCCCCC---------CHH-----
Confidence 888 9999 999977544322111 13568999999 99999866 42 211
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCC-ceeEEEEcccHHHHHHHHHHHHHHHHHHHHHhh
Q 010890 313 EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKL 391 (498)
Q Consensus 313 ~~l~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l-~~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~ 391 (498)
...++|++.|.+++++||+||||+|++||.||++.+|.+++.++.+ ++|||++| ++.+++++|..+.+||+...++.+
T Consensus 392 ~~~~~l~~~i~~~~~~~g~vlIp~fa~GR~qell~~l~~~~~~~~~~~~~V~~dg-~~~~~~~~~~~~~~~l~~~~~~~~ 470 (636)
T 2ycb_A 392 RAEKELVKTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIRTGIIDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQI 470 (636)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECCTTTHHHHHHHHHHHHHHTTSSCCCCEEEEH-HHHHHHHHHHHSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCcHHHHHHHHHHHHHHhCCCCCCeEEEeh-HHHHHHHHHHHhHHhhCHHHHHHH
Confidence 1224567788889999999999999999999999999999988777 69999986 999999999999999999877655
Q ss_pred -ccCCCCCcchhhhhccccccccccCChhhhccCCCCEEEEecCCCCCcchHHHHHHHHcCCCCceEEEcCCCChh
Q 010890 392 -FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAE 466 (498)
Q Consensus 392 -~~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n~Iil~~~~~~~ 466 (498)
....+||.+..+ +...+..+.+.+. .++|+||||+++||++|+++++|++|+.||+|+|||++|..+.
T Consensus 471 ~~~~~~~f~~~~~------~~~~~~~~~~~l~-~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~G 539 (636)
T 2ycb_A 471 FHMGHNPFISDIF------HKVNGMDERREIV-EGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEG 539 (636)
T ss_dssp HTTCCCGGGCTTE------EEECCHHHHHHHH-HSSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSS
T ss_pred HhccCCcccCCce------EEeCCHHHHHHhc-cCCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCC
Confidence 456778744221 1112121222221 2679999999999999999999999999999999999888654
No 7
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=100.00 E-value=6.6e-32 Score=291.21 Aligned_cols=306 Identities=13% Similarity=0.101 Sum_probs=219.0
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|++++|||. +++|+||++++.++..||+|||+.+.... ..+ .| .+.....+
T Consensus 9 i~i~~lGg~-~eiG~n~~li~~~~~~iLID~G~~~~~~~-----~~g---------------------~d--~iip~~~~ 59 (555)
T 3zq4_A 9 TAVFALGGL-GEIGKNTYAVQFQDEIVLIDAGIKFPEDE-----LLG---------------------ID--YVIPDYTY 59 (555)
T ss_dssp EEEEEEESB-SSSSCCEEEEEETTEEEEEEECCBCCCTT-----STT---------------------CS--EEEECCHH
T ss_pred EEEEEcCCC-CccCCEEEEEEECCeEEEEeCCCCCCccc-----ccc---------------------cc--ccccCHHH
Confidence 578999999 89999999999999999999998743200 000 00 00011111
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
+.....+||+|||||+ ||+||+|+|.+. +++|||+|++|.++.+..+.+..
T Consensus 60 -------l~~~~~~Id~I~lTH~H~DHiggl~~l~~~--~~~pIy~t~~t~~ll~~~l~~~~------------------ 112 (555)
T 3zq4_A 60 -------LVKNEDKIKGLFITHGHEDHIGGIPYLLRQ--VNIPVYGGKLAIGLLRNKLEEHG------------------ 112 (555)
T ss_dssp -------HHTTTTTEEEEEESCCCHHHHTTHHHHHTT--CCCCEEECHHHHHHHHHHHHHHS------------------
T ss_pred -------HhcCccCCCEEEECCCchhhhCCHHHHHHh--cCceEEECHHHHHHHHHHHHHcC------------------
Confidence 1235679999999999 999999999983 68999999999988766554320
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCC-CCccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH-~lGs~~~~I~~ 237 (498)
. +.+ ..++.+.+++++++ ++++|++++++| ++|+++|.|+.
T Consensus 113 -----------------------~-----~~~---------~~~~~v~~g~~~~i-g~~~v~~~~~~H~~pgs~~~~i~~ 154 (555)
T 3zq4_A 113 -----------------------L-----LRQ---------TKLNIIGEDDIVKF-RKTAVSFFRTTHSIPDSYGIVVKT 154 (555)
T ss_dssp -----------------------T-----TTT---------CCEEECCTTCCEEE-TTEEEEEEEEBCSSSSEEEEEEEE
T ss_pred -----------------------c-----cCC---------CceEEeCCCCEEEE-CCEEEEEEeCCCCCcCcEEEEEEE
Confidence 0 000 14678899999999 799999999999 78999999999
Q ss_pred CCeEEEEecCCCCCCCCCC--CCcccCC-----CCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHH
Q 010890 238 AKGNIAYISGSNFASGHAM--DFDYRAI-----QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVE 310 (498)
Q Consensus 238 ~~~~ivY~TgD~~~~~~~~--~~~~~~~-----~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~ 310 (498)
++++|+| |||+.....+. ..+...+ .++|+||+ |+||+++.+. . .+
T Consensus 155 ~~~~il~-tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~--------------esT~~~~~~~---------~-~s-- 207 (555)
T 3zq4_A 155 PPGNIVH-TGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLS--------------DSTNSENPEF---------T-MS-- 207 (555)
T ss_dssp TTEEEEE-CCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEE--------------ECTTTTCCSC---------C-CC--
T ss_pred CCcEEEE-eCCCCCCCCcCcCccCHHHHHHhcccCCcEEEe--------------cCcccCCCCC---------C-CC--
Confidence 9999999 99997654433 1222222 47999999 9999986542 1 11
Q ss_pred HHHHHHHHHHHHHHHHhc-CCeEEEecCC--hHHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHHHHHHHHHHHHH
Q 010890 311 EMEKLAFICSCAIDSVKA-GGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQR 387 (498)
Q Consensus 311 ~~~~l~~~~~~I~~tl~~-gG~VLIPv~~--~Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ewl~~~~ 387 (498)
+ .++.+.+.+++++ +|+|+||+|+ .||+|+++..+.++ ..+|++++....++++.++.+ .|+.
T Consensus 208 e----~~v~~~i~~~~~~~~grvii~~fasnv~R~q~il~~a~~~------gr~v~v~grs~~~~~~~~~~~-g~l~--- 273 (555)
T 3zq4_A 208 E----RRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQN------GRKVAVFGRSMESAIEIGQTL-GYIN--- 273 (555)
T ss_dssp H----HHHHHHHHHHHHHCCSCEEEECCTTCHHHHHHHHHHHHTT------TCEEEEESHHHHHHHHHHHGG-GSCC---
T ss_pred H----HHHHHHHHHHHHhCCCEEEEEEChhHHHHHHHHHHHHHHH------CCEEEEeCHHHHHHHHHHHHc-CCcc---
Confidence 1 1234567777776 9999999999 99999999988433 458999998888888877654 2211
Q ss_pred HHhhccCCCCCcchhhhhccccccccccCChhhhc-cCCCCEEEEecCCCCCcchHHHHHHHHcCCCCc--------eEE
Q 010890 388 QEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLM-NWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNS--------LLV 458 (498)
Q Consensus 388 ~~~~~~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~-~~~~p~Vv~as~~~l~~G~s~~~l~~~~~~~~n--------~Ii 458 (498)
++...++. . +..+ ..+++.|+++|++ .|....+|.+++.+++| +||
T Consensus 274 ----------~p~~~~v~---------~---~~~~~~~~~~~vii~tgs---qGe~~~~L~r~a~~~~~~~~~~~~d~vi 328 (555)
T 3zq4_A 274 ----------CPKNTFIE---------H---NEINRMPANKVTILCTGS---QGEPMAALSRIANGTHRQISINPGDTVV 328 (555)
T ss_dssp ----------CCGGGEEC---------G---GGTTTSCGGGEEEEECCT---TCCTTSHHHHHHSSCCSSCCCCTTCEEE
T ss_pred ----------CCcccEeC---------H---HHHhhCCCCCEEEEeCCC---CchHHHHHHHHhcCCCCccccCCCCEEE
Confidence 11111111 1 1122 2245678888876 58889999999999888 999
Q ss_pred EcCCCChh
Q 010890 459 LENEVDAE 466 (498)
Q Consensus 459 l~~~~~~~ 466 (498)
|+++.-|.
T Consensus 329 ~s~~~ipG 336 (555)
T 3zq4_A 329 FSSSPIPG 336 (555)
T ss_dssp ECSCCCTT
T ss_pred EECCCCCC
Confidence 99876443
No 8
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.97 E-value=2.9e-29 Score=271.48 Aligned_cols=308 Identities=12% Similarity=0.094 Sum_probs=205.6
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++|||+ +++|+||++|+.++.+||+|||+.+.... ..+. | .+ .|.
T Consensus 17 ~~i~~LGg~-~eig~n~~li~~~~~~iLID~G~~~~~~~-----~~g~---------------------~--~~---~p~ 64 (562)
T 3bk2_A 17 VEIIPLGGM-GEIGKNITVFRFRDEIFVLDGGLAFPEEG-----MPGV---------------------D--LL---IPR 64 (562)
T ss_dssp EEEEEEESB-SBSSCCEEEEEETTEEEEECCCCBCCCTT-----STTC---------------------C--EE---EEC
T ss_pred EEEEEecCC-CCcCCCEEEEEECCeEEEEECCCCCCccc-----cccc---------------------c--cc---ccc
Confidence 689999998 79999999999999999999998743200 0000 0 00 011
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhcccc---CCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME---GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEES 155 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~---g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~ 155 (498)
+. .......+||+|||||+ ||+||||+|.+.. .-++|||+|++|.++.+..+.+.
T Consensus 65 ~~----~l~~~~~~Id~I~iTH~H~DHiggl~~L~~~~~~~~~~~pIy~~~~t~~~l~~~l~~~---------------- 124 (562)
T 3bk2_A 65 VD----YLIEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEF---------------- 124 (562)
T ss_dssp CH----HHHHTGGGEEEEECCCCCHHHHTTHHHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHT----------------
T ss_pred hh----hhhcCcccCcEEEECCCChHHhCCHHHHHHhhccccCCceEEeCHHHHHHHHHHHHHc----------------
Confidence 10 01124668999999999 9999999999732 01689999999988766544321
Q ss_pred CCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCC-EEEEEEecCC-CCccEEE
Q 010890 156 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI-LIIKAFSSGL-DIGACNW 233 (498)
Q Consensus 156 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~-~~i~~~~aGH-~lGs~~~ 233 (498)
+. . .+ . ..++.+++++++++ ++ ++|++++++| ++|+++|
T Consensus 125 --------------------------~~-~-~~-~---------~~~~~v~~g~~~~l-g~~~~v~~~~~~H~~~gs~~~ 165 (562)
T 3bk2_A 125 --------------------------GL-R-PG-A---------FNLKEISPDDRIQV-GRYFTLDLFRMTHSIPDNSGV 165 (562)
T ss_dssp --------------------------TC-C-ST-T---------SEEEEECTTCEEEE-TTTEEEEEEECCCSSSSCEEE
T ss_pred --------------------------CC-C-cC-C---------ceEEEECCCCEEEe-CCCEEEEEEECCCCCcccEEE
Confidence 00 0 00 0 24678899999999 67 9999999999 6899999
Q ss_pred EEEeCCeEEEEecCCCCCCCCCC---CCcccCC-----CCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCC
Q 010890 234 IISGAKGNIAYISGSNFASGHAM---DFDYRAI-----QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNY 305 (498)
Q Consensus 234 ~I~~~~~~ivY~TgD~~~~~~~~---~~~~~~~-----~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~ 305 (498)
.|+.++.+|+| |||+.....+. ..+...+ .++|+||+ |+||+...+. .+
T Consensus 166 ~i~~~~~~il~-tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~--------------EsT~~~~~g~--------~~ 222 (562)
T 3bk2_A 166 VIRTPIGTIVH-TGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIA--------------DATNAERPGY--------TP 222 (562)
T ss_dssp EEEETTEEEEE-CCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEE--------------ECTTTTCCSC--------CC
T ss_pred EEEECCeEEEE-cCCCCCCCCCCCCCcccHHHHHHhhccCCCEEEe--------------cccCCCCCCC--------CC
Confidence 99999999999 99997643332 1122111 47999999 8999865432 01
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-cCCeEEEecCC--hHHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHHHHHHHH
Q 010890 306 DESVEEMEKLAFICSCAIDSVK-AGGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEW 382 (498)
Q Consensus 306 ~~~~~~~~~l~~~~~~I~~tl~-~gG~VLIPv~~--~Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~~~~~ew 382 (498)
.+ . .+.+.+.++++ .+|+|++|+|+ .+|+|+++..+.++ ..||++++....++++.|+.. +|
T Consensus 223 ~e--~------~v~~~l~~~~~~~~grvii~~fas~~~r~q~il~~a~~~------~r~V~v~g~s~~~~~~~~~~~-g~ 287 (562)
T 3bk2_A 223 SE--M------EIAKELDRVIGRAPGRVFVTTFASHIHRIQSVIWAAEKY------GRKVAMEGRSMLKFSRIALEL-GY 287 (562)
T ss_dssp CH--H------HHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHT------TCEEEEECHHHHHHHHHHHHT-TS
T ss_pred hH--H------HHHHHHHHHHHhCCCEEEEEEccccchHHHHHHHHHHHh------CCEEEEEChHHHHHHHHHHhc-Cc
Confidence 11 1 12234555554 58999999999 99999999987443 348888655445677766532 33
Q ss_pred HHHHHHHhhccCCCCCcchhhhhccccccccccCChhhhccC-CCCEEEEecCCCCCcchHHHHHHHHcC--------CC
Q 010890 383 LCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNW-QEPCIVFSPHWSLRLGPTIHLLRRWSG--------DH 453 (498)
Q Consensus 383 l~~~~~~~~~~~~~pF~~~~~~~~~~l~~~~~~~~~~~~~~~-~~p~Vv~as~~~l~~G~s~~~l~~~~~--------~~ 453 (498)
+. .+++|-. .+..... ++++|+++|+++ |.....+.+|+. ++
T Consensus 288 l~---------~~~~~i~-----------------~~~~~~~~~~~~vi~~tg~~---ge~~~~l~ria~~~h~~~~~~~ 338 (562)
T 3bk2_A 288 LK---------VKDRLYT-----------------LEEVKDLPDHQVLILATGSQ---GQPMSVLHRLAFEGHAKMAIKP 338 (562)
T ss_dssp CC---------CSSCCBC-----------------TGGGTTSCGGGEEEEECCTT---SCSHHHHHHHHTTCCSSCCCCT
T ss_pred cc---------CCCCccC-----------------HHHHhcCCCCCEEEEEcCCC---chhHHHHHhhhhcccccccCCC
Confidence 31 1222211 1122223 345677777554 555556777765 88
Q ss_pred CceEEEcCCCChh
Q 010890 454 NSLLVLENEVDAE 466 (498)
Q Consensus 454 ~n~Iil~~~~~~~ 466 (498)
+|+|+|++|..+.
T Consensus 339 ~~~vi~s~~~~~G 351 (562)
T 3bk2_A 339 GDTVILSSSPIPG 351 (562)
T ss_dssp TCEEEECSCCCTT
T ss_pred CCEEEEECCCCCC
Confidence 9999999886554
No 9
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.92 E-value=1.7e-24 Score=227.01 Aligned_cols=277 Identities=14% Similarity=0.048 Sum_probs=169.7
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|++|||+ +++|+||++|+.++.+||+|||........+ | .. .. ....+....+++..+....
T Consensus 7 m~i~~lG~~-~~~g~n~~li~~~~~~iLiD~G~~~~~~~~~-~--~~--------~~--~~~~~~~~~~~~~~l~~~~-- 70 (429)
T 2az4_A 7 TTVTFHSGI-LTIGGTVIEVAYKDAHIFFDFGTEFRPELDL-P--DD--------HI--ETLINNRLVPELKDLYDPR-- 70 (429)
T ss_dssp EEEEEEECT-TSSSCCEEEEEETTEEEEECCCCCCCTTCCC-S--CC--------CH--HHHHHTTSSCCCSSCBCGG--
T ss_pred eEEEEeeCC-CccCCeEEEEEECCeEEEEecCCCCCcccCC-C--cc--------hh--hhccCCcccCCchhhhccc--
Confidence 789999998 7899999999999999999999986421100 0 00 00 0000000011111110000
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
...|.........+||+|||||+ ||+||+|+|.+ ++|||+|+.|..+.+.+..+ + .
T Consensus 71 ~~~p~~~~~~~~~~i~~v~lTH~H~DHiggl~~l~~----~~~iy~~~~~~~~~~~~~~~------------~------~ 128 (429)
T 2az4_A 71 LGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDP----AVPLYTLKETKMILNSLNRK------------G------D 128 (429)
T ss_dssp GCCCCCSSCCCCCSEEEEECSCSCHHHHTTGGGBCT----TSCEEEEHHHHHHHHHHTTT------------S------C
T ss_pred ccccchhhhhccccCCEEEECCchHHHhCcHhHhcC----CCCEEECHHHHHHHHHHHHh------------C------c
Confidence 00011112346779999999999 99999999986 68999999998875432110 0 0
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCC-CCccEEEEEEe
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISG 237 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH-~lGs~~~~I~~ 237 (498)
.|. +.. .. ... ...+++.+++++.+++ ++++|+++++|| +.|+++|+|+.
T Consensus 129 ~~~--------~~~--------~~----~~~--------~~~~~~~~~~g~~~~~-g~~~v~~~~~~H~~~gs~~~~i~~ 179 (429)
T 2az4_A 129 FLI--------PSP--------FE----EKN--------FTREMIGLNKNDVIKV-GEISVEIVPVDHDAYGASALLIRT 179 (429)
T ss_dssp SSC--------CCT--------TS----CTT--------CCCCCEEECTTCEEEE-TTEEEEEEECCCSSTTCEEEEEEE
T ss_pred ccc--------ccc--------cc----ccc--------ccceEEEeCCCCeEEE-CCEEEEEEECCCCChhhEEEEEEe
Confidence 010 000 00 000 0025778899999999 799999999999 78999999999
Q ss_pred CCeEEEEecCCCCCCCCCCC---CcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHH
Q 010890 238 AKGNIAYISGSNFASGHAMD---FDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEK 314 (498)
Q Consensus 238 ~~~~ivY~TgD~~~~~~~~~---~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~ 314 (498)
++++++| |||+........ .-.+..+++|+||+ |+||++....... .. .+...+..
T Consensus 180 ~~~~i~~-tGD~~~~~~~~~~~~~~~~~~~~~d~Li~--------------Est~~~~~~~~~~-~~-~~~~~s~~---- 238 (429)
T 2az4_A 180 PDHFITY-TGDLRLHGHNREETLAFCEKAKHTELLMM--------------EGVSISFPEREPD-PA-QIAVVSEE---- 238 (429)
T ss_dssp TTEEEEE-CCSCCSSSTTHHHHHHHHHHHTTCSEEEE--------------ECCGGGSCCCCCC-TT-BCCCCSHH----
T ss_pred CCcEEEE-CCCcccCCCchHHHHHHHHhccCCCEEEE--------------CCCCcCccccccc-cc-CCCCCCHH----
Confidence 9999999 999965322110 00122358999999 8998763210000 00 00001111
Q ss_pred HHHHHHHHHHHHhc-CCeEEEecCC---hHHHHHHHHHHHHHHHhCCCceeEEEEcccHHHHHHHH
Q 010890 315 LAFICSCAIDSVKA-GGSVLIPINR---VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYT 376 (498)
Q Consensus 315 l~~~~~~I~~tl~~-gG~VLIPv~~---~Gr~~Ell~~L~~~~~~~~l~~pIy~~s~~a~~~~~~~ 376 (498)
++.+.+.+++++ +++++||.+. .+|+|+++ .+. ..||+++++++..+++.+
T Consensus 239 --~~~~~i~~~~~~~~~rlil~h~~~~~~~r~~~~a-------~~~--gr~v~~~g~~~~~~~~~~ 293 (429)
T 2az4_A 239 --DLVQHLVRLELENPNRQITFNGYPANVERFAKII-------EKS--PRTVVLEANMAALLLEVF 293 (429)
T ss_dssp --HHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHHH-------HHC--SSEEEEEHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCCcEEEEEeccchHHHHHHHH-------HHh--CCEEEEEChhHHHHHhhc
Confidence 123445666665 4558888866 78888882 222 349999999887887765
No 10
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.86 E-value=9.7e-22 Score=201.37 Aligned_cols=174 Identities=11% Similarity=0.031 Sum_probs=129.9
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
..+||+|||||+ ||+||||. ++++|||+|+.|.++.+..+.
T Consensus 49 ~~~IdaI~lTH~H~DHiggl~~-----~~~~pIy~s~~t~~ll~~~l~-------------------------------- 91 (367)
T 4b87_A 49 VEGCTAYFLTHFHSDHYAGLSK-----HFTFPVYCSEITGNLLKNKLH-------------------------------- 91 (367)
T ss_dssp CTTCCEEECCCCCHHHHTTCST-----TCCSCEEECHHHHHHHHHHSC--------------------------------
T ss_pred ccCCcEEEECcChHHHhCCccc-----ccCCcEEECHHHHHHHHHHhc--------------------------------
Confidence 458999999999 99999993 457999999999876432110
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEe-CCeEEEEecCC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG-AKGNIAYISGS 248 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~-~~~~ivY~TgD 248 (498)
. .. ..++.+++++++++ ++++|+++++||++|+++|.|+. ++++|+| |||
T Consensus 92 ------------~------~~---------~~~~~l~~g~~~~i-g~~~v~~~~agH~~gs~~~~i~~~~g~~il~-tGD 142 (367)
T 4b87_A 92 ------------V------QE---------QYIHPLPLDTECIV-NGVKVVLLDANHCPGAVMILFYLPNGTVILH-TGD 142 (367)
T ss_dssp ------------C------CG---------GGEEECCBTSCEEE-TTEEEEEEECSSSTTCEEEEEECTTSCEEEE-CCS
T ss_pred ------------c------cc---------ceEEEeCCCCEEEE-CCEEEEEEeCCCcCCcEEEEEEcCCCcEEEE-ecC
Confidence 0 00 24678899999999 89999999999999999999987 5667999 999
Q ss_pred CCCCCCCCCCcccC-CCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHHHHHHHHHHHHHh
Q 010890 249 NFASGHAMDFDYRA-IQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVK 327 (498)
Q Consensus 249 ~~~~~~~~~~~~~~-~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~tl~ 327 (498)
++....... ... ..++|+||+ |+||+++.+. .+++ .+..+++++.+.++++
T Consensus 143 ~~~~~~~~~--~~l~~~~~D~Li~--------------EsTy~~~~~~-------~ps~-----~~~~~~~~~~i~~~~~ 194 (367)
T 4b87_A 143 FRADPSMER--SLLADQKVHMLYL--------------DTTYCSPEYT-------FPSQ-----QEVIRFAINTAFEAVT 194 (367)
T ss_dssp CCCCGGGGG--SGGGTSCCCEEEE--------------CCTTCSTTCC-------CCCH-----HHHHHHHHHHHHHHHH
T ss_pred cccCcccch--hhhccCCCCEEEE--------------ecccCCCCCC-------CCCH-----HHHHHHHHHHHHHHHH
Confidence 986543322 122 258999999 9999986542 1121 1233445667778887
Q ss_pred cCCeE--EEecCChHHHHHHHHHHHHHHHhCCCceeEEEE
Q 010890 328 AGGSV--LIPINRVGVFLQLLEQIAIFMECSSLKIPIYII 365 (498)
Q Consensus 328 ~gG~V--LIPv~~~Gr~~Ell~~L~~~~~~~~l~~pIy~~ 365 (498)
++|.+ ++|++++||.|+++.++.++ ..+|++.
T Consensus 195 ~~g~~~v~~~a~~igr~q~ll~ia~~~------g~ki~v~ 228 (367)
T 4b87_A 195 LNPHALVVCGTYSIGKEKVFLAIADVL------GSKVGMS 228 (367)
T ss_dssp HCTTEEEEEEESSSCCHHHHHHHHHHT------TCCEECC
T ss_pred hCCCeEEEEccchhHHHHHHHHHHHHh------CCEEEEe
Confidence 67764 57889999999999988443 5688875
No 11
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=191.53 Aligned_cols=176 Identities=12% Similarity=0.093 Sum_probs=126.9
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
..+||+|||||+ ||+||||++. ++|||||+.|..+.+..+.+
T Consensus 22 ~~~i~ai~lTH~H~DHiggl~~l~-----~~pVy~s~~t~~ll~~~l~~------------------------------- 65 (336)
T 3zdk_A 22 AGTARLFFLSHMHSDHTVGLSSTW-----ARPLYCSPITAHLLHRHLQV------------------------------- 65 (336)
T ss_dssp HCSSCEEECCCCCGGGSTTCSTTC-----CSCEEECHHHHHHHHHHHCC-------------------------------
T ss_pred CCCCCEEEECCChHHHHCchHHHc-----CCCEEecHHHHHHHHHhhhh-------------------------------
Confidence 458999999999 9999999975 58999999998876543210
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEec------CCEEEEEEecCCCCccEEEEEEeCCeEEE
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN------GILIIKAFSSGLDIGACNWIISGAKGNIA 243 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~------~~~~i~~~~aGH~lGs~~~~I~~~~~~iv 243 (498)
.+ ..++.+++++++.+. ++++|+++++||++|++++.|+.++++|+
T Consensus 66 -----------~~-----------------~~~~~~~~~~~~~i~~~~~~~g~~~v~~~~~~H~~gs~~~~i~~~~~~i~ 117 (336)
T 3zdk_A 66 -----------SK-----------------QWIQALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTIL 117 (336)
T ss_dssp -----------CT-----------------TTEEECCTTSEEEEESSSSSSCEEEEEEEECSSSTTCEEEEEEETTEEEE
T ss_pred -----------cc-----------------cceEecCCCCeEEecCcccccCCEEEEEEECCCCcceEEEEEEeCCceEE
Confidence 00 124566677766541 68999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCC-cccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCCchHHhhhccCCCchhHHHHHHHHHHHHHH
Q 010890 244 YISGSNFASGHAMDF-DYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCA 322 (498)
Q Consensus 244 Y~TgD~~~~~~~~~~-~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I 322 (498)
| |||+......... ......++|+||+ |+||+++.+. .++++ +..+++.+.+
T Consensus 118 ~-tGD~~~~~~~~~~~~l~~~~~vD~Li~--------------DsT~~~~~~~-------~pse~-----~v~~~l~~~i 170 (336)
T 3zdk_A 118 Y-TGDFRYTPSMLKEPALTLGKQIHTLYL--------------DNTNCNPALV-------LPSRQ-----EAAHQIVQLI 170 (336)
T ss_dssp E-CCSCCCCGGGGGCGGGSSCCCCSEEEE--------------CCTBCCTTCC-------CCCHH-----HHHHHHHHHH
T ss_pred E-eCCCCCCcccccchhhhccCCccEEEE--------------ecCCCCCCCC-------CCCHH-----HHHHHHHHHH
Confidence 9 9999764332211 1113578999999 9999987652 11211 1222233333
Q ss_pred HHHHhcCCeEEEecCChHHHHHHHHHHHHHHHhCCCceeEEEEc
Q 010890 323 IDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIIS 366 (498)
Q Consensus 323 ~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~~~~~l~~pIy~~s 366 (498)
.++ .||+|+||+|.+||.|+++.+...+ ..+|++.+
T Consensus 171 ~~~--~~g~vii~~f~vgR~q~i~~~a~~~------grkV~v~g 206 (336)
T 3zdk_A 171 RKH--PQHNIKIGLYSLGKESLLEQLALEF------QTWVVLSP 206 (336)
T ss_dssp HTC--TTSEEEEEECSSSCHHHHHHHHHHH------TCCEECCH
T ss_pred HhC--CCCcEEEeecchHHHHHHHHHHHHc------CCEEEEEh
Confidence 332 3789999999999999999887543 46888874
No 12
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=99.75 E-value=3.4e-18 Score=171.76 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=125.0
Q ss_pred CeEEecCCCCCCC-----CCCeEEEEE---CCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcc
Q 010890 1 MKFTCLCQGGGFN-----FPPCHILNV---SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDAN 72 (498)
Q Consensus 1 m~i~~lGg~~~~v-----g~sc~ll~~---~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 72 (498)
|+|++||++ +.+ +.+|++|+. ++.+||+|||.....
T Consensus 1 M~i~~LGtg-~~~p~~~r~~~~~li~~~~~~~~~iLiD~G~~~~~----------------------------------- 44 (320)
T 1y44_A 1 MELLFLGTG-AGIPAKARNVTSVALKLLEERRSVWLFDCGEATQH----------------------------------- 44 (320)
T ss_dssp CEEEEEECB-SSSCCSSCCBCEEEEEETTTTSEEEEECCCTTHHH-----------------------------------
T ss_pred CEEEEEecC-CCCCCccCCCCEEEEEEecCCCcEEEEECCHHHHH-----------------------------------
Confidence 899999998 443 379999999 999999999987321
Q ss_pred cccccccccccccccccccCCcccEEEecCC--CCCCccchhcccc---C--CceeEEEehHHHHHHHHHHHHHHHHHHh
Q 010890 73 DLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME---G--FSAKIYITEAAARIGQLMMEELICMNME 145 (498)
Q Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~---g--~~~~Iy~T~pT~~l~~~~l~d~~~~~~~ 145 (498)
.+ .. ..++..+||+|||||. ||++|+|.|.+.. + ...+||+++.+.++.+..+.. ..
T Consensus 45 ~l-~~----------~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~----~~- 108 (320)
T 1y44_A 45 QM-LH----------TTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAV----TK- 108 (320)
T ss_dssp HH-TT----------SSCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHH----TT-
T ss_pred HH-HH----------cCCCHHHcCEEEEeCCChhhhCCHHHHHHHHHhcCCCCCEEEEeCHHHHHHHHHHHHh----hc-
Confidence 00 00 1124568999999999 9999999987632 2 257999999987764433211 00
Q ss_pred hhhhcCCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecC
Q 010890 146 YRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG 225 (498)
Q Consensus 146 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aG 225 (498)
.|. .+ + .+++.+..++.+++ ++++|++++++
T Consensus 109 -------------~~~-------------------------~~-~---------~~~~~~~~g~~~~~-~~~~v~~~p~~ 139 (320)
T 1y44_A 109 -------------THL-------------------------TY-P---------LAIQEIEEGIVFED-DQFIVTAVSVI 139 (320)
T ss_dssp -------------CCC-------------------------SS-C---------EEEEECCSEEEEEC-SSEEEEEEECB
T ss_pred -------------cCC-------------------------CC-c---------eEEEEcCCCceEec-CCEEEEEEEcc
Confidence 000 01 1 13556777788888 78999999999
Q ss_pred CCCccEEEEEEe--------------------------------------------------CCeEEEEecCCCCCCCCC
Q 010890 226 LDIGACNWIISG--------------------------------------------------AKGNIAYISGSNFASGHA 255 (498)
Q Consensus 226 H~lGs~~~~I~~--------------------------------------------------~~~~ivY~TgD~~~~~~~ 255 (498)
|..++++|+++. ++++|+| |||++.....
T Consensus 140 H~~~~~gy~i~~~~~~~~~~~~~~~~~g~~~g~~~~~l~~g~~v~~~~G~i~~~~~~~~~~~~g~~i~~-sgDt~~~~~~ 218 (320)
T 1y44_A 140 HGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVF-SGDTRVSDKL 218 (320)
T ss_dssp SSSSBEEEEEEECCBCCCC--------------------------------------CCCCBCCCEEEE-CCSCBCCHHH
T ss_pred CCCCcceEEEecCCCcCccCHHHHHHcCCCCchhHHHhhCCCeEEcCCCeEEcHHHhcccCCCCCEEEE-eCCCCCHHHH
Confidence 999999999974 4678999 9999764321
Q ss_pred CCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCCC
Q 010890 256 MDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNN 293 (498)
Q Consensus 256 ~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~~ 293 (498)
.+.+.++|+||+ |+||++..
T Consensus 219 ----~~~~~~~D~li~--------------E~t~~~~~ 238 (320)
T 1y44_A 219 ----KELARDCDVMVH--------------EATFAKED 238 (320)
T ss_dssp ----HHHTTTCSEEEE--------------ECCBCTTC
T ss_pred ----HHHhCCCCEEEE--------------eccCCcch
Confidence 134578999999 89998654
No 13
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=99.74 E-value=7e-18 Score=168.23 Aligned_cols=172 Identities=19% Similarity=0.192 Sum_probs=124.9
Q ss_pred CeEEecCCCCCCC-----CCCeEEEEE----CCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCc
Q 010890 1 MKFTCLCQGGGFN-----FPPCHILNV----SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDA 71 (498)
Q Consensus 1 m~i~~lGg~~~~v-----g~sc~ll~~----~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 71 (498)
|+|++||++ +.+ +.+|++|+. ++.+||+|||.....
T Consensus 2 m~i~~LGtg-~~~p~~~r~~~~~li~~~~~~~~~~iliD~G~~~~~---------------------------------- 46 (306)
T 2cbn_A 2 MNLIFLGTS-AGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQH---------------------------------- 46 (306)
T ss_dssp CEEEEEECB-SSSCCSSCCBCEEEEECCCSSCCCEEEECCCTTHHH----------------------------------
T ss_pred eEEEEEEcC-CCCCCCCCCCCEEEEEeecCCCCcEEEEECCHHHHH----------------------------------
Confidence 899999998 444 369999999 889999999987321
Q ss_pred ccccccccccccccccccccCCcccEEEecCC--CCCCccchhcccc-----CCceeEEEehHHHHHHHHHHHHHHHHHH
Q 010890 72 NDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRME-----GFSAKIYITEAAARIGQLMMEELICMNM 144 (498)
Q Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~-----g~~~~Iy~T~pT~~l~~~~l~d~~~~~~ 144 (498)
.+ .. ..++..+||+|||||. ||++|||.|.+.. ....+||+++.+.++.+..+... .
T Consensus 47 -~l-~~----------~~~~~~~i~~i~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~----~ 110 (306)
T 2cbn_A 47 -QL-LH----------TAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRIS----G 110 (306)
T ss_dssp -HH-HT----------SCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTHHHHHHHHHHHT----T
T ss_pred -HH-HH----------hCCCHHHcCEEEEecCCchhhCChHHHHHHHHhcCCCCCeEEEcCccHHHHHHHHHHhh----c
Confidence 00 00 1124668999999999 9999999987631 13578999999877654332210 0
Q ss_pred hhhhhcCCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec
Q 010890 145 EYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS 224 (498)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a 224 (498)
.| ..+ + -+++.+..++.+++ ++++|+++++
T Consensus 111 --------------~~-------------------------~~~-~---------~~~~~~~~g~~~~~-~~~~v~~~~~ 140 (306)
T 2cbn_A 111 --------------SW-------------------------TDY-P---------LEIVEIGAGEILDD-GLRKVTAYPL 140 (306)
T ss_dssp --------------CC-------------------------CSS-C---------EEEEECCSEEEEEC-SSEEEEEEEC
T ss_pred --------------cC-------------------------CCc-e---------EEEEEcCCCcEeec-CCEEEEEEEc
Confidence 00 011 1 14566777788888 7999999999
Q ss_pred CCCCccEEEEEEe--------------------------------------------------CCeEEEEecCCCCCCCC
Q 010890 225 GLDIGACNWIISG--------------------------------------------------AKGNIAYISGSNFASGH 254 (498)
Q Consensus 225 GH~lGs~~~~I~~--------------------------------------------------~~~~ivY~TgD~~~~~~ 254 (498)
-|..++.+|+|+. ++++|+| |||+++...
T Consensus 141 ~H~~~~~gy~i~~~~~~~~~~~~~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~~-sgDt~~~~~ 219 (306)
T 2cbn_A 141 EHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAI-FGDTGPCDA 219 (306)
T ss_dssp BSSSCCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGTBCCCCCCCEEEE-CCSCBSCST
T ss_pred cCCCCccEEEEEecCccCccCHHHHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHhcCCCCCCCEEEE-eCCCCCHHH
Confidence 9999999999974 4678999 999976532
Q ss_pred CCCCcccCCCCCCEEEEcCCCCCCCcccCCCCcccCCC
Q 010890 255 AMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDN 292 (498)
Q Consensus 255 ~~~~~~~~~~~~D~LI~~~~~~~~~~~~~~~estyg~~ 292 (498)
. .+.+.++|+||+ |+||++.
T Consensus 220 ~----~~~~~~~D~li~--------------E~t~~~~ 239 (306)
T 2cbn_A 220 A----LDLAKGVDVMVH--------------EATLDIT 239 (306)
T ss_dssp H----HHHHTTCSEEEE--------------ECCBCGG
T ss_pred H----HHHhcCCCEEEE--------------ECcCChh
Confidence 1 134578999999 8999764
No 14
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=99.71 E-value=2.4e-17 Score=161.43 Aligned_cols=158 Identities=18% Similarity=0.104 Sum_probs=117.3
Q ss_pred CeEEecCCCCCCC-----CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccc
Q 010890 1 MKFTCLCQGGGFN-----FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLI 75 (498)
Q Consensus 1 m~i~~lGg~~~~v-----g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 75 (498)
|+|++||++ +.+ +.+|++|+.++..||+|||..... .|.
T Consensus 25 m~i~~LG~g-~~~p~~~~~~~~~li~~~~~~iLiD~G~~~~~-----------------------------------~l~ 68 (268)
T 1zkp_A 25 MKMTVVGFW-GGFPEAGEATSGYLFEHDGFRLLVDCGSGVLA-----------------------------------QLQ 68 (268)
T ss_dssp EEEEEEECB-SSSCCTTCCBSEEEEEETTEEEEECCCTTHHH-----------------------------------HHT
T ss_pred cEEEEEeCC-CCcCCCCCCccEEEEEECCcEEEEECCHHHHH-----------------------------------HHH
Confidence 799999987 333 589999999999999999987321 010
Q ss_pred ccccccccccccccccCCcccEEEecCC--CCCCccchhccc---------cCCceeEEEehHHHHHHHHHHHHHHHHHH
Q 010890 76 FAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM---------EGFSAKIYITEAAARIGQLMMEELICMNM 144 (498)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~---------~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~ 144 (498)
. . +...+||+|||||. ||++|++.+.+. ..-..+||+++.+.+..+..
T Consensus 69 ~-----------~-~~~~~i~~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~--------- 127 (268)
T 1zkp_A 69 K-----------Y-ITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHSL--------- 127 (268)
T ss_dssp T-----------T-CCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSSSHHHHHTT---------
T ss_pred H-----------h-CCcccCCEEEEecCCchhhCCHHHHHHHHHhcccccCCCCceEEEeCccHHHHHHhc---------
Confidence 0 0 24558999999999 999999988763 12258999998876531100
Q ss_pred hhhhhcCCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec
Q 010890 145 EYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS 224 (498)
Q Consensus 145 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a 224 (498)
.|.+. .++..+..++.+++ ++++|+++++
T Consensus 128 ------------------------------------------~~~~~--------~~~~~~~~g~~~~~-g~~~v~~~~~ 156 (268)
T 1zkp_A 128 ------------------------------------------THEPH--------TKGIPYNPEETLQI-GPFSISFLKT 156 (268)
T ss_dssp ------------------------------------------CBTTT--------EEEEECCTTSCEEE-TTEEEEEEEC
T ss_pred ------------------------------------------ccCCc--------cceEEecCCCeEEE-CCEEEEEEEC
Confidence 00000 23556777889999 7999999999
Q ss_pred CCCCccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 225 GLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 225 GH~lGs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
.|..|+++|+|+.++++++| |||+...... .+...++|+||+
T Consensus 157 ~H~~~~~~~~i~~~~~~i~~-~GD~~~~~~~----~~~~~~~d~li~ 198 (268)
T 1zkp_A 157 VHPVTCFAMRITAGNDIVVY-SADSSYIPEF----IPFTKDADLFIC 198 (268)
T ss_dssp CSSSCCEEEEEEETTEEEEE-CCSCCCCTTH----HHHHTTCSEEEE
T ss_pred CCCCCceEEEEEECCeEEEE-eCCCCCCHHH----HHHHcCCCEEEE
Confidence 99999999999999999999 9999764321 123468999999
No 15
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=99.71 E-value=1e-17 Score=163.44 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=114.7
Q ss_pred CeEEecCCCCCC----------------------CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCcc
Q 010890 1 MKFTCLCQGGGF----------------------NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSD 58 (498)
Q Consensus 1 m~i~~lGg~~~~----------------------vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~ 58 (498)
|+|++||.+++. -+.+|++|+.++.+||+|||...- .
T Consensus 3 ~~~~~LGtg~~~g~P~~~c~C~~C~~ar~~~~~~r~~s~~li~~~~~~iLiD~G~~~~----------~----------- 61 (258)
T 3g1p_A 3 LTLTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVVKFNDAITLIDAGLHDL----------A----------- 61 (258)
T ss_dssp EEEEEEECBCSSCBSCTTCCSHHHHHHHHCGGGCBCBSEEEEEETTEEEEECCCCTTH----------H-----------
T ss_pred eEEEEEEeCCCCCCccCCcCChhhhhhhhCccccccCceEEEEECCcEEEEECCchHH----------H-----------
Confidence 789999988333 146899999999999999994310 0
Q ss_pred chhhccccCCCCcccccccccccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHH
Q 010890 59 SQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 136 (498)
Q Consensus 59 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l 136 (498)
. .+...+||+|||||. ||++|++.|....+...+||+++.+..+
T Consensus 62 -----------------~------------~~~~~~id~IliTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~----- 107 (258)
T 3g1p_A 62 -----------------D------------RWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGC----- 107 (258)
T ss_dssp -----------------H------------HCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCS-----
T ss_pred -----------------h------------hcCcccCCEEEEccCchhHhCCHHHHhccCCCCeEEEeChhhhhH-----
Confidence 0 013458999999999 9999999997634446899999876421
Q ss_pred HHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhh-ceeecCCCeEEecC
Q 010890 137 EELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISK-VQTLRFGEEACYNG 215 (498)
Q Consensus 137 ~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~-i~~v~y~e~~~l~~ 215 (498)
.+. .. . +.+ .. .+.+..++.+++ +
T Consensus 108 ~~~---------------------~~-------------------~---~~~-----------~~~~~~~~~g~~~~~-g 132 (258)
T 3g1p_A 108 DDL---------------------FK-------------------H---PGL-----------LDFSHTVEPFVVFDL-Q 132 (258)
T ss_dssp TTT---------------------TT-------------------S---CTT-----------EEEEEECCTTCCEEE-T
T ss_pred HHH---------------------hc-------------------C---CCc-----------cccccccCCCCeEEE-C
Confidence 000 00 0 000 12 246788999999 7
Q ss_pred CEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCC--CCCCEEEE
Q 010890 216 ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAI--QGSDLILY 271 (498)
Q Consensus 216 ~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~--~~~D~LI~ 271 (498)
+++|+++++.|..|+++|+|+.++++++| |||++...... .+.+ .++|+||+
T Consensus 133 ~~~v~~~~~~H~~~~~g~~i~~~~~~i~~-~GDt~~~~~~~---~~~l~~~~~Dlli~ 186 (258)
T 3g1p_A 133 GLQVTPLPLNHSKLTFGYLLETAHSRVAW-LSDTAGLPEKT---LKFLRNNQPQVMVM 186 (258)
T ss_dssp TEEEEEEECCSSSCCEEEEEECSSCEEEE-ECSCSSCCHHH---HHHHHHTCCSEEEE
T ss_pred CEEEEEEECCCCCCceEEEEEeCCcEEEE-ECCCCCCCHHH---HHHHHhCCCCEEEE
Confidence 99999999999999999999999999999 99997532211 1223 58999999
No 16
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=163.22 Aligned_cols=90 Identities=22% Similarity=0.221 Sum_probs=67.3
Q ss_pred CeEEecCCCCCC----CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccc
Q 010890 1 MKFTCLCQGGGF----NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIF 76 (498)
Q Consensus 1 m~i~~lGg~~~~----vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 76 (498)
|+|++||.+++. -+.+|++|+.++.++|+|||...... +..
T Consensus 1 M~l~~LGtg~~~p~~~r~~ss~ll~~~~~~iLiD~G~g~~~~-----------------------------------l~~ 45 (368)
T 3zwf_A 1 MDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQ-----------------------------------LMK 45 (368)
T ss_dssp CEEEEEECBSSSCCSSSCSSEEEEEETTEEEEECCCTTHHHH-----------------------------------HHH
T ss_pred CEEEEECCCCCCCCCCCCccEEEEEECCeEEEEeCChhHHHH-----------------------------------HHH
Confidence 999999987432 25899999999999999999763210 000
Q ss_pred cccccccccccccccCCcccEEEecCC--CCCCccchhccccC---------CceeEEEehHHHHHHHHHH
Q 010890 77 AEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEG---------FSAKIYITEAAARIGQLMM 136 (498)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g---------~~~~Iy~T~pT~~l~~~~l 136 (498)
..++..+||+|||||. ||++|||.|....+ -..+||++..+.+.....+
T Consensus 46 -----------~~~~~~~id~I~iTH~H~DHi~gl~~l~~~~~~~~~~~~~~~~l~iygp~~~~~~l~~~l 105 (368)
T 3zwf_A 46 -----------SQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTM 105 (368)
T ss_dssp -----------SSSCGGGEEEEECCCSSGGGTTTHHHHHHHHHHHC------CCEEEEEETTHHHHHHHHH
T ss_pred -----------cCCChHHCCEEEECCCChHHhCcHHHHHHHhhhccccccCCCCeEEEEcHHHHHHHHHHH
Confidence 1134568999999999 99999999886422 1579999999987655443
No 17
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=99.62 E-value=5.3e-16 Score=154.15 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=86.0
Q ss_pred cCCcccEEEecCC--CCCCccchhccc---cCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhH
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRM---EGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 165 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~---~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~ 165 (498)
...+||+|||||. ||++||+.|... .+...+||+++.+.+..+..+.. .+. .|.
T Consensus 96 ~~~~id~IliTH~H~DHi~Gl~~l~~~~~~~~~~~~vy~~~~~~~~l~~~~~~----------~~~-------~~~---- 154 (293)
T 3md7_A 96 GVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGY----------CFE-------TPV---- 154 (293)
T ss_dssp TCCCCSEEECSCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGG----------GTS-------CCT----
T ss_pred CCCcccEEEEcCCCchhhCCHHHHHHHhhcCCCceEEEECHHHHHHHHHhhhh----------hhc-------ccc----
Confidence 3468999999999 999999988652 14578999999887653321110 000 000
Q ss_pred HhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCC----EEEEEEecCCC-CccEEEEEEeCCe
Q 010890 166 LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI----LIIKAFSSGLD-IGACNWIISGAKG 240 (498)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~----~~i~~~~aGH~-lGs~~~~I~~~~~ 240 (498)
+ ..|.+. -+++.+..++.+++ ++ ++|+++++.|. .++++|+|+
T Consensus 155 ----------------~---~~~~~~--------~~~~~l~~g~~~~~-g~~~~~~~v~~~~~~H~~~~~~g~~i~---- 202 (293)
T 3md7_A 155 ----------------G---SSYPPI--------LSMHDIAPETPFSI-EGAGGAIRFEPFSQVHGDIESLGFRIG---- 202 (293)
T ss_dssp ----------------T---CCCCCC--------EEEEECCTTCCEEE-CCTTCCEEEEEEEEEETTEEEEEEEET----
T ss_pred ----------------c---cCCCCc--------eEEEEcCCCCcEEE-CCCCCcEEEEEEEecCCCCCEEEEEEe----
Confidence 0 011110 14667888999999 67 99999999998 799999997
Q ss_pred EEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 241 NIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 241 ~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
+++| |||+....... .+.+.++|+||+
T Consensus 203 ~~~y-~gDt~~~~~~~---~~~~~~~Dlli~ 229 (293)
T 3md7_A 203 SVVY-CTDVSAFPEQS---LQYIKDADVLII 229 (293)
T ss_dssp TEEE-ECSCSBCCGGG---HHHHTTCSEEEE
T ss_pred EEEE-ECCCCCCCHHH---HHHhcCCCEEEE
Confidence 8999 99996421111 234579999999
No 18
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=99.60 E-value=3.1e-15 Score=146.79 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=113.0
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|+.+..+ + ..+|+++ ++.+||+|||..... .+
T Consensus 1 m~i~~~~~g-~--~~~~~~i--~~~~iLiD~G~~~~~-----------------------------------~l------ 34 (280)
T 2e7y_A 1 MNIIGFSKA-L--FSTWIYY--SPERILFDAGEGVST-----------------------------------TL------ 34 (280)
T ss_dssp CCEEEEEET-T--TEEEEEE--GGGTEEEEECTTHHH-----------------------------------HH------
T ss_pred CEEEEEecC-C--ceEEEEE--CCcEEEEECCcchHH-----------------------------------Hh------
Confidence 788888544 1 3466666 578999999977321 00
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccc----cC---CceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcC
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM----EG---FSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 151 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~----~g---~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~ 151 (498)
.....+||+|||||. ||++|+|.|... .+ -..+||+++.+. ..+..+.....+ +
T Consensus 35 --------~~~~~~i~~IliTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~--------~ 97 (280)
T 2e7y_A 35 --------GSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNR-AVEEYTEFIKRA--------N 97 (280)
T ss_dssp --------GGGGGGCCEEECSCCCHHHHTTHHHHHHHHHHHSGGGCCCEEEEEETTCH-HHHHHHHHHHHH--------C
T ss_pred --------ccCccCCCEEEEeCCchhHHCCHHHHHHHHHHhccCCCCCCEEEECccHH-HHHHHHHHHhhc--------c
Confidence 013457999999999 999999999621 11 248999999887 544332211000 0
Q ss_pred CCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecC----CEEEEEEecCCC
Q 010890 152 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG----ILIIKAFSSGLD 227 (498)
Q Consensus 152 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~----~~~i~~~~aGH~ 227 (498)
+ . . .+ + .+++.+..++.+++.+ +++|+++++||.
T Consensus 98 ------------------~-----------~--~-~~-~---------~~~~~~~~g~~~~~g~~~~~~~~v~~~~~~H~ 135 (280)
T 2e7y_A 98 ------------------P-----------D--L-RF-S---------FNVHPLKEGERVFLRNAGGFKRYVQPFRTKHV 135 (280)
T ss_dssp ------------------G-----------G--G-TT-T---------EEEEEECTTCCEECCCSSCSCEEEEEEECCSC
T ss_pred ------------------c-----------C--C-CC-c---------eEEEEcCCCCEEEeCCcccCCEEEEEEEccCC
Confidence 0 0 0 00 0 1466788899999932 899999999999
Q ss_pred Cc--cEEEEEEe---------------------------------CCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEc
Q 010890 228 IG--ACNWIISG---------------------------------AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (498)
Q Consensus 228 lG--s~~~~I~~---------------------------------~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~ 272 (498)
.| +++|+|+. ++++|+| |||++.. . .+...++|+||+
T Consensus 136 ~~~~~~g~~i~~~~~~l~~~~~g~~~~~~~~l~~~~g~~~~~~~~~g~~i~y-sgDt~~~--~----~~~~~~~d~li~- 207 (280)
T 2e7y_A 136 SSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTI-SGDSLAL--D----PEEIRGTELLIH- 207 (280)
T ss_dssp SSSCCEEEEEEEEEEEECGGGTTCCHHHHHHHHHHHCTGGGEEEEEEEEEEE-CCSCSSC--C----HHHHTTCSCEEE-
T ss_pred CCCceEEEEEEEcccccCHhhcCCCHHHHHHHHhhcCCceecCCccCCEEEE-ECCCChH--H----HHhhcCCCEEEE-
Confidence 99 99999973 3568999 9999764 1 234578999999
Q ss_pred CCCCCCCcccCCCCcccCCC
Q 010890 273 DLSSLDSTEDIDQSSFSDDN 292 (498)
Q Consensus 273 ~~~~~~~~~~~~~estyg~~ 292 (498)
|+||.+.
T Consensus 208 -------------e~t~~~~ 214 (280)
T 2e7y_A 208 -------------ECTFLDA 214 (280)
T ss_dssp -------------ECCBC--
T ss_pred -------------eCCcCCh
Confidence 7888654
No 19
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=99.60 E-value=5.8e-16 Score=155.88 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=107.4
Q ss_pred CCeEEEEECCEE-EEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 15 PPCHILNVSGFH-VLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 15 ~sc~ll~~~~~~-ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
++|++|+.++.+ ||||||.+..... . . ..... ....++..
T Consensus 41 ~ss~li~~~~~~~iLiD~G~~~~~~l--------~---------------------------~-~~~l~---~~~~~~~~ 81 (321)
T 3jxp_A 41 QSSIALSDDGVHWILCNASPDIRAQL--------Q---------------------------A-FAPMQ---PARALRDT 81 (321)
T ss_dssp BCEEEEESSSSSEEEECCCTTHHHHH--------H---------------------------T-CGGGC---CCSSSSCC
T ss_pred ceEEEEEeCCceEEEEeCCchHHHHH--------H---------------------------h-ccccc---ccccCCcc
Confidence 579999999886 9999998754210 0 0 00000 00113567
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+||+|||||. ||++|||.|.+ +...+||+++.+.+..+..+. .... +.
T Consensus 82 ~i~~i~lTH~H~DH~~gl~~l~~--~~~~~vy~~~~~~~~l~~~~~-~f~~--------------------------~~- 131 (321)
T 3jxp_A 82 GINAIVLLDSQIDHTTGLLSLRE--GCPHQVWCTDMVHQDLTTGFP-LFNM--------------------------LS- 131 (321)
T ss_dssp SEEEEECSCCCHHHHGGGGGGGG--GCCEEEEECHHHHHHTTTTSC-HHHH--------------------------HT-
T ss_pred cCCEEEECCCChhhhhhHHHHHh--cCCCeEEECHHHHHHHHhhCc-cccc--------------------------cc-
Confidence 9999999999 99999999965 457899999988664321110 0000 00
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEe--cCCEEEEEEecC--------CC-----CccEEEEEE
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACY--NGILIIKAFSSG--------LD-----IGACNWIIS 236 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l--~~~~~i~~~~aG--------H~-----lGs~~~~I~ 236 (498)
. .+.. -+++.+..++++++ .++++|+++++- |. ..+++|+|+
T Consensus 132 ----------~----~~~~---------i~~~~i~~g~~~~i~~~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~ 188 (321)
T 3jxp_A 132 ----------H----WNGG---------LQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVE 188 (321)
T ss_dssp ----------T----TTTC---------EEEEECCSSSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEE
T ss_pred ----------c----ccCc---------eeEEEcCCCCeEEeccCCCeEEEEEEecCCccccccccccccCCCcEEEEEE
Confidence 0 0000 13566777888988 258999999997 65 478999999
Q ss_pred --eCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 237 --GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 237 --~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
.++++|+| +||++...... .+.++++|+||+
T Consensus 189 ~~~~g~~i~y-~~Dt~~~~~~~---~~~~~~~D~li~ 221 (321)
T 3jxp_A 189 DTRTGGKLFY-APGLGQVDEKL---LAMMHGADCLLV 221 (321)
T ss_dssp ETTTCCEEEE-ESSCCCCCHHH---HHHHHHCSEEEE
T ss_pred ecCCCcEEEE-ECCCCCCCHHH---HHHhcCCCEEEE
Confidence 88999999 99986432111 134568999999
No 20
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=99.49 E-value=5.7e-13 Score=128.08 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=103.3
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|+.+| .+|++|+.++.+||+|||..... +
T Consensus 30 ~~it~lg-------~s~~li~~~~~~iliDpg~~~~~------------------------------------~------ 60 (235)
T 3kl7_A 30 LTITFIK-------HGSLMLTYDNHSIQVDPVSEYAD------------------------------------Y------ 60 (235)
T ss_dssp EEEEEEE-------TTEEEEEETTEEEEESCCTTTCC------------------------------------T------
T ss_pred eEEEEEc-------ceEEEEEECCEEEEECCCCCccc------------------------------------h------
Confidence 4566654 47999999999999999976321 0
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
.+..++|+|||||. ||+ +++.+........+||+++.+.+..
T Consensus 61 ---------~~~~~id~VliTH~H~DH~-~~~~l~~~~~~~~~v~~~~~~~~~l-------------------------- 104 (235)
T 3kl7_A 61 ---------TTFPKADIILITHEHGDHL-DPKAIQAVEKSDTEIIANENSQKKL-------------------------- 104 (235)
T ss_dssp ---------TSSCCCSEEEECCSSTTTC-CHHHHHHHCCTTCEEEECHHHHHHH--------------------------
T ss_pred ---------hhCCCCCEEEECCCccccC-CHHHHHHhhcCCCEEEEcHHHHHHh--------------------------
Confidence 02447999999999 999 5666554234578999998764421
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCC-eEEecCCEEEEEEecCCCCc--------
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE-EACYNGILIIKAFSSGLDIG-------- 229 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e-~~~l~~~~~i~~~~aGH~lG-------- 229 (498)
.+...+..++ .+++ ++++|+++++-|..+
T Consensus 105 -----------------------------------------~~~~~l~~g~~~~~~-g~~~i~~~p~~H~~~~~~~~~~~ 142 (235)
T 3kl7_A 105 -----------------------------------------GKGKVLKNGDTDTSI-SYMKIEAVPAYNTTPGRDKYHPR 142 (235)
T ss_dssp -----------------------------------------TCSEECCTTCEECCS-TTCEEEEEECCCCSTTGGGTSCT
T ss_pred -----------------------------------------cCcEEecCCCEEEEE-CCEEEEEEEeecCCCccccccCC
Confidence 1234567788 8888 799999999998753
Q ss_pred --cEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 230 --ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 230 --s~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
+++|+|+.++++++| +||++.... ...+.++|++++
T Consensus 143 ~~~~g~~i~~~g~~i~~-~GDt~~~~~-----~~~l~~~Dv~il 180 (235)
T 3kl7_A 143 HRDNGYILTFDGLRVYI-AGDTEDIPE-----MKDLKDIDIAFL 180 (235)
T ss_dssp TTSEEEEEEETTEEEEE-CCSCCSCGG-----GGGCCSCSEEEE
T ss_pred CCceEEEEEeCCeEEEE-ECCCCchhh-----HHhhcCCCEEEE
Confidence 589999999999999 999976432 123568999999
No 21
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=99.33 E-value=1.3e-11 Score=120.77 Aligned_cols=111 Identities=8% Similarity=-0.028 Sum_probs=76.2
Q ss_pred cccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHH
Q 010890 89 LWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 166 (498)
Q Consensus 89 ~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 166 (498)
++++.+||+|++||. ||+|+++.+ . +.+||+++.+.+........ ..
T Consensus 98 g~~~~~i~~VilTH~H~DH~gg~~~~-~----~~~v~~~~~~~~~~~~~~~~----~~---------------------- 146 (276)
T 2r2d_A 98 GLSPDDISTVVLSHLHNDHAGCVEYF-G----KSRLIAHEDEFATAVRYFAT----GD---------------------- 146 (276)
T ss_dssp TCCGGGCSEEECSCCSTTTSTTGGGC-S----SSEEEEEHHHHHHHHHHHHT----TC----------------------
T ss_pred CCCHHHCCEEEecCcccccCCChhhC-C----CCEEEECHHHHHHHhccccc----cc----------------------
Confidence 346678999999999 999999987 2 58999999886643221100 00
Q ss_pred hhchhhHhhhhccCCCCCCCCCCchHHHHHHH---Hhhceeec-CCCeEEecCCEEEEEE-ecCCCCccEEEEEEeCC-e
Q 010890 167 ELLPSALRKIALGEDGSELGGGCPCIAHVKDC---ISKVQTLR-FGEEACYNGILIIKAF-SSGLDIGACNWIISGAK-G 240 (498)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~---~~~i~~v~-y~e~~~l~~~~~i~~~-~aGH~lGs~~~~I~~~~-~ 240 (498)
. ...|. ..++... -.+++.+. .++.+++.++++|.+. + ||..|++++.++.++ +
T Consensus 147 ---------------~--~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~v~~~~p-gHt~g~~~~~~~~~~~~ 206 (276)
T 2r2d_A 147 ---------------H--SSPYI--VKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGT-GHASGMLGLAVRLEKQP 206 (276)
T ss_dssp ---------------C--SSSSC--HHHHHHHTTSCCCEEEECTTCCEEEEETTEEEEEEES-SSSSSEEEEEEECSSSC
T ss_pred ---------------c--ccccc--hHHhhhhccccccceeccCCCceeEecCCEEEEeCCC-CCCceeEEEEEEcCCCc
Confidence 0 00010 1112111 02355666 5788998558999999 6 999999999999877 8
Q ss_pred EEEEecCCCCC
Q 010890 241 NIAYISGSNFA 251 (498)
Q Consensus 241 ~ivY~TgD~~~ 251 (498)
+++| |||...
T Consensus 207 ~vl~-~GD~~~ 216 (276)
T 2r2d_A 207 GFLL-VSDACY 216 (276)
T ss_dssp EEEE-EETTSC
T ss_pred eEEE-Eechhh
Confidence 9999 999854
No 22
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=99.28 E-value=7.6e-12 Score=123.45 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=101.0
Q ss_pred EEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccc
Q 010890 3 FTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYK 82 (498)
Q Consensus 3 i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 82 (498)
+.++|.. +.+||+|+.++..||+|||..... . .+.. ..
T Consensus 47 v~~~~~~----~~n~~li~~~~~~iLID~G~~~~~--------~--------------------------~~~~---~l- 84 (294)
T 3m8t_A 47 IYYVGTD----GIAVYVIKTSQGLILMDTAMPQST--------G--------------------------MIKD---NI- 84 (294)
T ss_dssp EEECCCS----SSCCEEEEETTEEEEECCCCGGGH--------H--------------------------HHHH---HH-
T ss_pred EEEeCCC----CeEEEEEEECCceEEEECCCchhH--------H--------------------------HHHH---HH-
Confidence 4556443 589999999999999999985211 0 0000 00
Q ss_pred cccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccc
Q 010890 83 TVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQW 160 (498)
Q Consensus 83 ~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w 160 (498)
...++.+.+||+||+||. ||+||++.+.+. ++.+||+++.+........ ..+...
T Consensus 85 ---~~~g~~~~~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~~~~~~------------~~~~~~------ 141 (294)
T 3m8t_A 85 ---AKLGFKVADIKLILNTHAHLDHTGGFAEIKKE--TGAQLVAGERDKPLLEGGY------------YPGDEK------ 141 (294)
T ss_dssp ---HHTTCCGGGEEEEECSCCCHHHHTTHHHHHHH--HCCEEEEEGGGHHHHHHTC------------BTTBTT------
T ss_pred ---HHcCCCHHHCcEEEECCCCccccccHHHHhhc--cCCEEEEChHHHHHHhccc------------ccCccc------
Confidence 012234558999999999 999999999873 4689999998876532110 000000
Q ss_pred chhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEe-cCCCCccEEEEEEeCC
Q 010890 161 MKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAK 239 (498)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~-aGH~lGs~~~~I~~~~ 239 (498)
. ... .+.+. .....+..++.+++ ++++|+++. .||..|++++.++.++
T Consensus 142 ------------~-------~~~---~~~~~--------~~~~~~~~g~~~~~-g~~~i~~~~~pgHt~g~~~~~~~~~~ 190 (294)
T 3m8t_A 142 ------------N-------EDL---AFPAV--------KVDRAVKEGDRVTL-GDTTLTAHATPGHSPGCTSWEMTVKD 190 (294)
T ss_dssp ------------C-------GGG---CCCCC--------CCSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEEEEE
T ss_pred ------------c-------ccC---CCCCC--------CCceEeCCCCEEEe-CCEEEEEEeCCCCCccCEEEEEEccC
Confidence 0 000 01111 12356788999999 799999987 6899999999998655
Q ss_pred e----EEEEecCCCC
Q 010890 240 G----NIAYISGSNF 250 (498)
Q Consensus 240 ~----~ivY~TgD~~ 250 (498)
+ +++| |||..
T Consensus 191 ~~~~~~~lf-~GD~~ 204 (294)
T 3m8t_A 191 GKEDREVLF-FCSGT 204 (294)
T ss_dssp TTEEEEEEE-CCCCC
T ss_pred CCccceEEE-EcCcc
Confidence 4 8999 99985
No 23
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=99.27 E-value=4.7e-11 Score=121.87 Aligned_cols=116 Identities=15% Similarity=0.055 Sum_probs=80.6
Q ss_pred CCcccEEEecCC--CCCC--ccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHh
Q 010890 92 VSFIDVVLISSP--MGML--GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g--~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (498)
..+||+|||||. ||+| ++..+.+...-..+||++..+.+..+ ..
T Consensus 107 l~~id~VliTH~H~DHig~~~l~~l~~~~~~~~~v~~p~~~~~~l~----~~---------------------------- 154 (360)
T 2wyl_A 107 IRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWI----GW---------------------------- 154 (360)
T ss_dssp CCCCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHH----HH----------------------------
T ss_pred cCCCCEEEECCCchhcCCHHHHHHHHhcCCCCCEEEEcHHHHHHHH----Hc----------------------------
Confidence 568999999999 9997 45555542212689999987654321 10
Q ss_pred hchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCC--------------------
Q 010890 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-------------------- 227 (498)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~-------------------- 227 (498)
+ + + ..+++.+..++.+++ ++++|+++++.|.
T Consensus 155 --------------g-----~-~--------~~~~~~l~~g~~~~~-g~~~v~~~~~~H~~~~~~~~~~~h~~g~~~~~~ 205 (360)
T 2wyl_A 155 --------------G-----V-P--------KERCIVVKPGDVVKV-KDIEIHALDAFDRTALITLPADQKAAGVLPDGM 205 (360)
T ss_dssp --------------T-----C-C--------GGGEEECCTTCEEEE-TTEEEEEEECCCC------------------CC
T ss_pred --------------C-----C-C--------hheEEEcCCCCEEEE-CCEEEEEEeccCccccccccccccccccccccc
Confidence 0 0 0 025677888999999 7999999999664
Q ss_pred -CccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 228 -IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 228 -lGs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
.++++|+|+.++++|+| |||+........ .....++|++++
T Consensus 206 ~~~~~g~~i~~~g~~i~~-sGDt~~~~~~~~--i~~~~~~Dv~il 247 (360)
T 2wyl_A 206 DDRAVNYLFKTPGGSLYH-SGDSHYSNYYAK--HGNEHQIDVALG 247 (360)
T ss_dssp TTTBEEEEEEETTEEEEE-CTTCCCCTTHHH--HHHHSCCCEEEE
T ss_pred CcccEEEEEEECCcEEEE-eCCCCcCHHHHH--HhhCCCCCEEEe
Confidence 23799999999999999 999976432111 101126899988
No 24
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=99.26 E-value=2.8e-12 Score=121.83 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=96.6
Q ss_pred CeEEecCCCCCC---------CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCc
Q 010890 1 MKFTCLCQGGGF---------NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDA 71 (498)
Q Consensus 1 m~i~~lGg~~~~---------vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 71 (498)
|+++|+|.. +. .+.+||+|+.++..||+|||..... ..
T Consensus 13 ~~~~~~~~~-g~~~~p~~~~~~~~n~~li~~~~~~iLID~G~~~~~--------~~------------------------ 59 (221)
T 1ztc_A 13 MELKILVTG-GNVFVPGRLNAHFSTVVYLEHKDRRIIIDPGNLSSM--------DE------------------------ 59 (221)
T ss_dssp EEEEEEECC-BEEEETTTEECCBCCEEEEEETTEEEEECCCCGGGH--------HH------------------------
T ss_pred eeEEEEEec-ceEEecCCCCCCceEEEEEEeCCeEEEEECCCCcch--------HH------------------------
Confidence 677888776 22 2468999999999999999985211 00
Q ss_pred ccccccccccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhh
Q 010890 72 NDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 149 (498)
Q Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~ 149 (498)
+...+ ....+++.+||+||+||. ||+|+++.+. +.+||+++. . +.+.+ +
T Consensus 60 --l~~~l-------~~~g~~~~~i~~ViiTH~H~DH~gg~~~~~-----~~~v~~~~~---~----~~~~~---~----- 110 (221)
T 1ztc_A 60 --LEEKF-------SELGISPDDITDVLFTHVHLDHIFNSVLFE-----NATFYVHEV---Y----KTKNY---L----- 110 (221)
T ss_dssp --HHHHH-------HHHTCCGGGCCEEECSCCCHHHHGGGGGCT-----TCEEEEEGG---G----GGSCG---G-----
T ss_pred --HHHHH-------HHcCCCHHHCcEEEEcCCccccCCchhhCC-----CCEEEEeHH---H----hhhhh---h-----
Confidence 00000 012235668999999999 9999999875 489999987 1 11000 0
Q ss_pred cCCCCCCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCc
Q 010890 150 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG 229 (498)
Q Consensus 150 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lG 229 (498)
.|... .. .....+.....++..++.++.+.. +++++...+ ||..|
T Consensus 111 ---------~~~~~--~~----------------------~~~~~~~~~~~~~~~~~~g~~l~~-~~~~v~~~p-GHt~g 155 (221)
T 1ztc_A 111 ---------SFGTI--VG----------------------RIYSKVISSWKNVVLLKGEESLFD-EKVKVFHTP-WHARE 155 (221)
T ss_dssp ---------GGCHH--HH----------------------HHHHHHHHTCCSEEEECSCCEETT-TTEEEEECC-SSSTT
T ss_pred ---------hhccc--hh----------------------hhhhhccccccceEEeCCCCEEEC-CeEEEEEcC-CCCcc
Confidence 00000 00 000001000023566777776642 478888887 99999
Q ss_pred cEEEEEEeCC-eEEEEecCCCC
Q 010890 230 ACNWIISGAK-GNIAYISGSNF 250 (498)
Q Consensus 230 s~~~~I~~~~-~~ivY~TgD~~ 250 (498)
++++.++.++ ++++| |||+.
T Consensus 156 ~~~~~~~~~~~~~vlf-tGD~~ 176 (221)
T 1ztc_A 156 HLSFLLDTENAGRVLI-TGDIT 176 (221)
T ss_dssp CEEEEEEETTTEEEEE-CGGGS
T ss_pred cEEEEEEcCCCCeEEE-EeCcc
Confidence 9999999876 78999 99975
No 25
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=99.26 E-value=4.4e-11 Score=116.69 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=104.7
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCcccc-ccCCCCcccccccccCCccchhhccccCCCCccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALT-VFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 79 (498)
|+|+.+|. +|++|+.++.+||+|+++...... .|. +.. + ..+ ..|
T Consensus 5 m~it~lGh-------a~~li~~~g~~iLiDp~~s~~~~~~~~~----~~~-----------------~----~~~--~~~ 50 (264)
T 3rpc_A 5 TQYTHIRN-------ATGKLTIKNTTFLIDPFLAPKDTYPGFE----GTF-----------------N----YQQ--RMP 50 (264)
T ss_dssp CEEEEEET-------TEEEEEETTEEEEESCCCCCTTCBCCCT----TBT-----------------T----TTS--CBS
T ss_pred EEEEEEeC-------cEEEEEECCEEEEeCcccCCCcCccCCC----Ccc-----------------c----ccc--cCC
Confidence 78888864 699999999999999987643210 010 000 0 000 000
Q ss_pred ccccccccccc-c-CCcccEEEecCC--CCCCccchhccccCCceeEEEe-hHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 010890 80 WYKTVNNLHLW-N-VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYIT-EAAARIGQLMMEELICMNMEYRQFYGAEE 154 (498)
Q Consensus 80 ~~~~~~~~~~~-~-~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T-~pT~~l~~~~l~d~~~~~~~~~~~~~~~~ 154 (498)
....+ ... + +.+||+|||||. ||+++++.+.. ..+.|||++ ..+.... ..
T Consensus 51 ~~~~~---~~~~~l~~~id~iliTH~H~DH~~~~~~~~~--~~~~~v~~~~~~~~~~l----~~---------------- 105 (264)
T 3rpc_A 51 MVDLP---LSMDDLLSNVTAVVVTHTHLDHWDDTAINSI--PKSLPIFVQNTADKELI----TS---------------- 105 (264)
T ss_dssp SSCCS---SCHHHHHTTCCEEECSCCCGGGSCHHHHHHS--CTTSCEEESSHHHHHHH----HH----------------
T ss_pred CCCCC---CCHHHccccCCEEEECCCchhhCCCHHHHhh--ccCCeEEEeCHHHHHHH----Hh----------------
Confidence 00000 000 1 237999999999 99999988876 346899999 6554321 10
Q ss_pred CCCcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCc-----
Q 010890 155 SSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG----- 229 (498)
Q Consensus 155 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lG----- 229 (498)
.| + .+++.+ ++.+++ ++++|+++++-|..+
T Consensus 106 --------------------------~g-----~-----------~~~~~~--~~~~~~-~~~~i~~~pa~H~~~~~~~~ 140 (264)
T 3rpc_A 106 --------------------------QG-----F-----------IDVRII--FESLEF-NGITLRKTGGSHGTVEMYAN 140 (264)
T ss_dssp --------------------------TT-----C-----------SCEEEC--SSEEEE-TTEEEEEECCCSSCHHHHTS
T ss_pred --------------------------cC-----C-----------CeeEEe--cccEEE-CCEEEEEeccccCCcccccc
Confidence 01 0 123333 688999 799999999999875
Q ss_pred ---------cEEEEEEeC-CeEEEEecCCCCCCCCCCCCcccCCCCCCEEEEc
Q 010890 230 ---------ACNWIISGA-KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 272 (498)
Q Consensus 230 ---------s~~~~I~~~-~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~~ 272 (498)
+++|+|+.+ +++|+| +||+++...... .....++|++++.
T Consensus 141 p~~~~~~~~~~g~~i~~~~~~~i~~-~GDt~~~~~~~~--~~~~~~~Dv~il~ 190 (264)
T 3rpc_A 141 PVLAPLAGDAMGVIFEAADEPTVYL-VGDTVWTSDVEK--ALLRFDPNVIIMN 190 (264)
T ss_dssp TTHHHHHCCCCEEEEECTTSCCEEE-CCSCCSCHHHHH--HHHHHCCSEEEEE
T ss_pred ccccccccccEEEEEEeCCccEEEE-ECCcCchHHHHH--HHHHhCCCEEEEe
Confidence 489999987 788888 999976432110 0011258999993
No 26
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=99.26 E-value=2.6e-12 Score=120.64 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=97.1
Q ss_pred CeEEecCCCCCCCCCCeEEEEE--CCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNV--SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAE 78 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~--~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 78 (498)
|+|+++-.+ ..+.+||+|+. ++..||+|||.....+. ..| .
T Consensus 1 m~i~~~~~~--~~~~n~~li~~~~~~~~iLiD~G~~~~~l~--------------------------------~~l-~-- 43 (210)
T 2xf4_A 1 MNYRIIPVT--AFSQNCSLIWCEQTRLAALVDPGGDAEKIK--------------------------------QEV-D-- 43 (210)
T ss_dssp CEEEEEEET--TTTEEEEEEECTTTCEEEEECCCSCHHHHH--------------------------------HHH-H--
T ss_pred CeEEEEeeC--CcccEEEEEEecCCCcEEEEcCCCCHHHHH--------------------------------HHH-H--
Confidence 777777554 35789999984 67899999995422110 001 0
Q ss_pred cccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 010890 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESS 156 (498)
Q Consensus 79 ~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~ 156 (498)
. . -.+|++|++||. ||+||++.+.+.. ..+||+++.+.+.....+.... +.++.
T Consensus 44 -~-------~---g~~i~~ii~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~-------~~~~~---- 99 (210)
T 2xf4_A 44 -A-------S---GVTLMQILLTHGHLDHVGAASELAQHY--GVPVIGPEKEDEFWLQGLPAQS-------RMFGL---- 99 (210)
T ss_dssp -H-------H---TCEEEEEECSCSCHHHHTTHHHHHHHH--TCCEECCCGGGHHHHHTHHHHH-------HHTTC----
T ss_pred -H-------c---CCceeEEEECCCChhhhcCHHHHHHHc--CCcEEEecchHHHHhccchhhh-------hhcCC----
Confidence 0 0 115899999999 9999999998733 5799999988664322211110 00000
Q ss_pred CcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEE
Q 010890 157 GPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII 235 (498)
Q Consensus 157 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I 235 (498)
+ ...+. .....+..++.+.+ ++.+|+++.+ ||..|++++.+
T Consensus 100 -------------~----------------~~~~~--------~~~~~~~~g~~~~~-g~~~i~~~~~pgHt~g~~~~~~ 141 (210)
T 2xf4_A 100 -------------D----------------ECQPL--------TPDRWLNDGDRVSV-GNVTLQVLHCPGHTPGHVVFFD 141 (210)
T ss_dssp -------------C----------------CCCCC--------CCSBCCCTTCEEEE-TTEEEEEEECCSSSTTCEEEEE
T ss_pred -------------c----------------ccCCC--------CCceEECCCCEEEE-CCeEEEEEECCCCCCCcEEEEe
Confidence 0 00000 12345677889999 7899998854 89999999987
Q ss_pred EeCCeEEEEecCCCC
Q 010890 236 SGAKGNIAYISGSNF 250 (498)
Q Consensus 236 ~~~~~~ivY~TgD~~ 250 (498)
+ +++++| |||..
T Consensus 142 ~--~~~~lf-~GD~~ 153 (210)
T 2xf4_A 142 E--QSQLLI-SGDVI 153 (210)
T ss_dssp T--TTTEEE-EETSE
T ss_pred C--CCCEEE-ECCEe
Confidence 4 678999 99974
No 27
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=99.25 E-value=2.2e-11 Score=118.39 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=99.6
Q ss_pred EEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccc
Q 010890 3 FTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYK 82 (498)
Q Consensus 3 i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 82 (498)
+.++|+. +.+||+|+.++..||+|||..... . .+....
T Consensus 17 v~~i~~~----~~n~~li~~~~~~iLID~G~~~~~--------~--------------------------~l~~~l---- 54 (263)
T 1k07_A 17 LYYVGTD----DLASYLIVTPRGNILINSDLEANV--------P--------------------------MIKASI---- 54 (263)
T ss_dssp EEECCBS----SBCCEEEEETTEEEEECCCCGGGH--------H--------------------------HHHHHH----
T ss_pred EEEECCC----CeEEEEEEeCCceEEEECCCcccH--------H--------------------------HHHHHH----
Confidence 4555443 578999999999999999986211 0 000000
Q ss_pred cccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccc
Q 010890 83 TVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQW 160 (498)
Q Consensus 83 ~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w 160 (498)
....+.+.+|++|++||. ||+||++.+.+. +..+||+++.+.+....... .. ..|
T Consensus 55 ---~~~g~~~~~i~~IilTH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~~~~~~~----------------~~--~~~ 111 (263)
T 1k07_A 55 ---KKLGFKFSDTKILLISHAHFDHAAGSELIKQQ--TKAKYMVMDEDVSVILSGGK----------------SD--FHY 111 (263)
T ss_dssp ---HHTTCCGGGEEEEECSSSSHHHHTTHHHHHHH--HCCEEEEEHHHHHHHHTTTT----------------TC--TTT
T ss_pred ---HHcCCCHHHCcEEEeCCCCccccccHHHHHHh--cCCEEEEcHHHHHHHhcccc----------------cc--ccc
Confidence 012234568999999999 999999999873 35899999988764321000 00 000
Q ss_pred chhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEeC-
Q 010890 161 MKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGA- 238 (498)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~- 238 (498)
..... . .+.+. .....+..++.+.+ ++++|+++.+ ||+.|++++.++..
T Consensus 112 ---------~~~~~-------~----~~~~~--------~~~~~~~~g~~~~~-g~~~i~~i~~pGHt~g~~~~~~~~~~ 162 (263)
T 1k07_A 112 ---------ANDSS-------T----YFTQS--------TVDKVLHDGERVEL-GGTVLTAHLTPGHTRGCTTWTMKLKD 162 (263)
T ss_dssp ---------TTCGG-------G----CCCCC--------CCSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEEEEE
T ss_pred ---------Ccccc-------c----cCCCC--------CcceEeCCCCEEEE-CCeEEEEEECCCCCCCcEEEEEeccc
Confidence 00000 0 00010 13456788899999 7888988764 89999999999864
Q ss_pred -C--eEEEEecCCCCC
Q 010890 239 -K--GNIAYISGSNFA 251 (498)
Q Consensus 239 -~--~~ivY~TgD~~~ 251 (498)
+ .+++| |||...
T Consensus 163 ~~~~~~~lf-~GD~~~ 177 (263)
T 1k07_A 163 HGKQYQAVI-IGSIGV 177 (263)
T ss_dssp TTEEEEEEE-ECCCCC
T ss_pred CCceeEEEE-ECCccc
Confidence 4 48999 999754
No 28
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=99.25 E-value=6.4e-11 Score=121.78 Aligned_cols=116 Identities=20% Similarity=0.129 Sum_probs=81.0
Q ss_pred CCcccEEEecCC--CCCC--ccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHh
Q 010890 92 VSFIDVVLISSP--MGML--GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 167 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g--~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (498)
..+||+|||||. ||++ ++..+.+...-..+||++..+.+..+ ..
T Consensus 131 ~~~iD~IliTH~H~DHig~~~l~~l~~~~~~~~~v~~~~~~~~~l~----~~---------------------------- 178 (379)
T 3bv6_A 131 IKEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWL----GW---------------------------- 178 (379)
T ss_dssp CCCCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHH----HH----------------------------
T ss_pred CCCCCEEEECCCCcccCChHHHHHHHhcCCCCcEEEecHHHHHHHH----Hc----------------------------
Confidence 568999999999 9997 55555542212689999987654321 10
Q ss_pred hchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCC-------------C------
Q 010890 168 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-------------I------ 228 (498)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~-------------l------ 228 (498)
+. +. .+++.+..++.+++ ++++|+++++.|. .
T Consensus 179 --------------g~------~~--------~~~~~l~~g~~~~~-g~~~v~~~~~~H~~~~~~~p~~h~~~~G~~~~~ 229 (379)
T 3bv6_A 179 --------------GV------PQ--------ERCIVAKVGDVLEI-GDVKIRVLDSFDRTALVTLPKGVSSYDKAILDG 229 (379)
T ss_dssp --------------TC------CG--------GGEEECCTTCEEEE-TTEEEEEEECCCHHHHTCCCTTSCSSCGGGGGC
T ss_pred --------------CC------Ch--------hhEEEeCCCCEEEE-CCEEEEEEecccccccccccccccccccccccc
Confidence 00 00 24677888999999 7999999999774 2
Q ss_pred ---ccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 229 ---GACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 229 ---Gs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
++++|+|+.++++|+| |||+........ .....++|++++
T Consensus 230 ~~~~~~g~~i~~~g~~i~~-sGDt~~~~~~~~--i~~~~~~Dv~il 272 (379)
T 3bv6_A 230 MDERAVNYLIETSGGSVYH-SGDSHYSNYYAK--HGNDYQIDVALL 272 (379)
T ss_dssp HHHHBEEEEEEETTEEEEE-CTTCCCCTTHHH--HHHHSCCSEEEE
T ss_pred cCCceEEEEEEeCCeEEEE-eCCCCccHHHHH--HhhcCCCCEEEe
Confidence 3799999999999999 999976432111 111126899998
No 29
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=99.24 E-value=4e-12 Score=122.90 Aligned_cols=101 Identities=12% Similarity=0.020 Sum_probs=68.1
Q ss_pred cccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHH
Q 010890 89 LWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 166 (498)
Q Consensus 89 ~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 166 (498)
.+++.+||+|++||. ||+|+++.+. +.+||+++.+.+..... . . +..
T Consensus 95 g~~~~~I~~VilTH~H~DH~gg~~~~~-----~~~i~~~~~~~~~~~~~--------~---~-----------~~~---- 143 (254)
T 3dha_A 95 GYEPDDLLYIISSHLHFDHAGGNGAFT-----NTPIIVQRTEYEAALHR--------E---E-----------YMK---- 143 (254)
T ss_dssp TCCGGGCSEEECSCCSHHHHTTGGGCS-----SSCEEEEHHHHHHHHHC--------T---T-----------SCG----
T ss_pred CCCHHHCCEEEcCCChhhcCCChHHCC-----CCEEEECHHHHHHhhcc--------c---c-----------ccc----
Confidence 345667999999999 9999999875 48999999886643210 0 0 000
Q ss_pred hhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeC-CeEEEEe
Q 010890 167 ELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYI 245 (498)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~-~~~ivY~ 245 (498)
.. . ... ..+..+ -++...+ +++++...+ ||..|++++.++.+ +++++|
T Consensus 144 --------~~-----~--~~~------------~~~~~~-~~~~~~~-~~i~~~~~p-GHt~g~~~~~~~~~~~~~vl~- 192 (254)
T 3dha_A 144 --------EC-----I--LPH------------LNYKII-EGDYEVV-PGVQLLYTP-GHSPGHQSLFIETEQSGSVLL- 192 (254)
T ss_dssp --------GG-----S--CTT------------SCEEEE-CSSEEEE-TTEEEEECC-SSSTTCEEEEEEETTTEEEEE-
T ss_pred --------cc-----c--Ccc------------cceEEe-cCCcccc-CCEEEEECC-CCCCCCEEEEEEeCCCCEEEE-
Confidence 00 0 000 012222 3555555 688887766 99999999999876 678999
Q ss_pred cCCCCC
Q 010890 246 SGSNFA 251 (498)
Q Consensus 246 TgD~~~ 251 (498)
|||+..
T Consensus 193 ~GD~~~ 198 (254)
T 3dha_A 193 TIDASY 198 (254)
T ss_dssp EETTCS
T ss_pred Eecccc
Confidence 999854
No 30
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=99.21 E-value=1.5e-11 Score=120.92 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=95.1
Q ss_pred CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccC
Q 010890 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (498)
Q Consensus 13 vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 92 (498)
.+.+||+|+.++..||+|||....... ....+...... ...+.. .. ...++.+
T Consensus 46 ~~~n~~lI~~~~~~iLID~G~~~~~~~------~~~~~~~~~~~--------------~~~l~~---~l----~~~g~~~ 98 (280)
T 3esh_A 46 LPTHPILIQTAQYNLIIDAGIGNGKLS------EKQLRNFGVDE--------------ESHIIA---DL----ANYNLTP 98 (280)
T ss_dssp EECCCEEEECSSCEEESCCTTCSSCSC------HHHHHHTTCSS--------------CCCHHH---HH----HTTTCCT
T ss_pred EeEEEEEEEECCEEEEEECCCCCcccc------cccccccCCcc--------------cchHHH---HH----HHcCCCH
Confidence 456899999999999999998753100 00000000000 000101 00 1133467
Q ss_pred CcccEEEecCC--CCCCccchhccccCC-ceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRMEGF-SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~g~-~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
.+||+||+||. ||+||++.|.+...| +.+||+++.+..... +. .......+.
T Consensus 99 ~~Id~IllTH~H~DHigg~~~l~~~~~fp~a~i~~~~~~~~~~~----~~-------------~~~~~~~~~-------- 153 (280)
T 3esh_A 99 KDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFI----AP-------------NIRSKSTYW-------- 153 (280)
T ss_dssp TSCCEEECSCCCHHHHGGGSCTTSCCSSTTCEEEEEHHHHHHHH----SC-------------CTTGGGTSC--------
T ss_pred HHCCEEEeCCCcccccCcccccccccCCCCCEEEECHHHHHHhh----Cc-------------ccccccchh--------
Confidence 78999999999 999999999873245 799999998765421 00 000000000
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~ 249 (498)
...|.++ ..+++.+ .+..++.+++++. ...||+.|++++.++.++++++| |||+
T Consensus 154 ---------------~~~~~~~-------~~~~~~~--~~~~~l~~gi~~~-~~pGHt~g~~~~~i~~~~~~vlf-tGD~ 207 (280)
T 3esh_A 154 ---------------DKNKGDY-------SNKLILF--EKHFEPVPGIKMQ-HSGGHSFGHTIITIESQGDKAVH-MGDI 207 (280)
T ss_dssp ---------------GGGCCGG-------GGGEEEE--SSEECSSTTEEEE-ECCSSSTTCEEEEEEETTEEEEE-CGGG
T ss_pred ---------------hhhhhhh-------hheEEEe--CCCCeEcCCEEEE-EcCCCCcccEEEEEEECCcEEEE-EEcc
Confidence 0011111 0233333 3445554577773 45799999999999999999999 9998
Q ss_pred CC
Q 010890 250 FA 251 (498)
Q Consensus 250 ~~ 251 (498)
..
T Consensus 208 ~~ 209 (280)
T 3esh_A 208 FP 209 (280)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 31
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=99.17 E-value=2.6e-11 Score=113.65 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=93.4
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|+++..+ ..+.+||+|+.++..||+|||.....+. ..+ . .
T Consensus 1 M~i~~~~~g--~~~~n~~li~~~~~~iliD~G~~~~~l~--------------------------------~~l-~---~ 42 (207)
T 2zwr_A 1 MRVFPVTLG--PLQENAYLVETGEGPVLIDPGDEPEKLL--------------------------------ALF-Q---T 42 (207)
T ss_dssp CEEEEEEET--TTTEEEEEEEETTEEEEECCCSCHHHHH--------------------------------HHH-H---H
T ss_pred CeEEEEecC--CcccEEEEEEeCCcEEEEeCCCCHHHHH--------------------------------HHH-H---H
Confidence 889988765 4689999999999999999996532110 001 0 0
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
. ..+|++|++||. ||+||++.+.+. +..+||+++.+.+......... ..++.
T Consensus 43 -------~---g~~i~~vilTH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~~~~~~~~~--------~~~g~------ 96 (207)
T 2zwr_A 43 -------T---GLIPLAILLTHAHFDHVGAVAPLVEA--LDLPVYLHPLDLPLYEGADLAA--------RAWGL------ 96 (207)
T ss_dssp -------H---TCCCSCEECSCCCGGGTTTHHHHHHH--HCCCEEECGGGHHHHHTHHHHH--------HHTTC------
T ss_pred -------c---CCcccEEEECCCChHHHccHHHHHHH--hCCcEEECHHHHHHHhCchhhh--------hhcCC------
Confidence 0 124899999999 999999999873 3689999999877543221110 00100
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeC
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA 238 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~ 238 (498)
. ...+. .....+..++.+. ++++... .||..|++++.++
T Consensus 97 -----------------------~--~~~~~----------~~~~~~~~g~~i~---~~~~~~~-pGHt~g~~~~~~~-- 135 (207)
T 2zwr_A 97 -----------------------A--IPKPP----------LPVRPLEEGMRLF---GFQVLHL-PGHSPGHVAFYDP-- 135 (207)
T ss_dssp -----------------------C--CCCCC----------SCCEECCTTCEET---TEEEEEC-CSSSTTCEEEEET--
T ss_pred -----------------------C--CCcCC----------CCceEeCCCCEEE---EEEEEeC-CCCCCCcEEEEEC--
Confidence 0 00000 0123445555433 5666654 4899999999985
Q ss_pred CeEEEEecCCCC
Q 010890 239 KGNIAYISGSNF 250 (498)
Q Consensus 239 ~~~ivY~TgD~~ 250 (498)
+++++| |||..
T Consensus 136 ~~~~lf-~GD~~ 146 (207)
T 2zwr_A 136 EGAQVF-SGDLL 146 (207)
T ss_dssp TTTEEE-EETSE
T ss_pred CCCEEE-Eeccc
Confidence 678999 99974
No 32
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=99.16 E-value=2.7e-11 Score=114.25 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=92.2
Q ss_pred CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccC
Q 010890 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (498)
Q Consensus 13 vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 92 (498)
.+++|++|+.++..||+|||....... .+.. ... ....
T Consensus 29 ~~~n~~li~~~~~~iLiD~G~~~~~~~---------------------------------~~~~---~l~------~~~~ 66 (219)
T 3l6n_A 29 YSANSMYLVTKKGVVLFDVPWEKVQYQ---------------------------------SLMD---TIK------KRHN 66 (219)
T ss_dssp EEEEEEEEEETTEEEEESCCSSGGGHH---------------------------------HHHH---HHH------HHHS
T ss_pred ccceEEEEEeCCEEEEEeCCCChHHHH---------------------------------HHHH---HHH------HhcC
Confidence 357999999999999999997642100 0000 000 0012
Q ss_pred CcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhch
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (498)
.+||+|++||. ||+||++.+.+ +..+||+++.+.+..+. .
T Consensus 67 ~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~~~----~------------------------------- 108 (219)
T 3l6n_A 67 LPVVAVFATHSHDDRAGDLSFFNN---KGIKTYATAKTNEFLKK----D------------------------------- 108 (219)
T ss_dssp CCEEEEECSSSSTTTTCCTHHHHH---TTCEEEECHHHHHHHHH----T-------------------------------
T ss_pred CceeEEEecCCCcccccCHHHHHh---CCCEEEEcHHHHHHHHh----c-------------------------------
Confidence 58999999999 99999999986 37899999987653210 0
Q ss_pred hhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEe--cCCCCccEEEEEEeCCeEEEEecCC
Q 010890 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS--SGLDIGACNWIISGAKGNIAYISGS 248 (498)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~--aGH~lGs~~~~I~~~~~~ivY~TgD 248 (498)
+. + .....+..++.+.+ ++++|+++. .||..|++++.+. +.+++| |||
T Consensus 109 -----------~~------~---------~~~~~~~~g~~~~~-g~~~i~~~~~~pgHt~g~~~~~~~--~~~~lf-~GD 158 (219)
T 3l6n_A 109 -----------GK------A---------TSTEIIKTGKPYRI-GGEEFVVDFLGEGHTADNVVVWFP--KYNVLD-GGC 158 (219)
T ss_dssp -----------TC------C---------CCSEECCTTSEEEE-TTEEEEEECCCCSSSSSCCEEEET--TTTEEE-EET
T ss_pred -----------CC------C---------CCcEecCCCCEEEE-CCEEEEEEeCCCCCCCCCEEEEEC--CCCEEE-ECC
Confidence 00 0 12456778889999 799999986 6999999999884 567999 999
Q ss_pred CC
Q 010890 249 NF 250 (498)
Q Consensus 249 ~~ 250 (498)
.-
T Consensus 159 ~~ 160 (219)
T 3l6n_A 159 LV 160 (219)
T ss_dssp TS
T ss_pred ee
Confidence 74
No 33
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=99.14 E-value=3.7e-10 Score=109.30 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=96.9
Q ss_pred eEEecCCC--CCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccc
Q 010890 2 KFTCLCQG--GGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (498)
Q Consensus 2 ~i~~lGg~--~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 79 (498)
.|+++..+ |.....+||+++.++..||+|||..... .
T Consensus 5 ~i~~i~~~~~g~~~~~~~~li~~~~~~iLiD~G~~~~~--------------------------------------~--- 43 (261)
T 3adr_A 5 GLHSIPAGPVEFPEIATVYVMCGEKLTVMIDAGVSNSI--------------------------------------A--- 43 (261)
T ss_dssp EEEEEECSCTTCGGGSEEEEEECSSCEEEECCCCTTCC--------------------------------------C---
T ss_pred CeEEEeccCCCCCCceEEEEEEcCCcEEEEeCCCCCCh--------------------------------------h---
Confidence 45555333 1223467999987688999999987421 0
Q ss_pred ccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 010890 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSG 157 (498)
Q Consensus 80 ~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~ 157 (498)
. ..+ ..+||+|++||. ||+||++.+.+. ++.+||+++.+.+.....- ....+.....+.+
T Consensus 44 ~-------l~~-~~~i~~vi~TH~H~DH~gg~~~l~~~--~~~~i~~~~~~~~~l~~~~-~~~~~~~~~~~~~------- 105 (261)
T 3adr_A 44 D-------FSF-LDKLDYIVLTHLHIDHIGLLPELLQV--YKAKVLVKSGFKKYLTSED-GLKKLNESAEKVL------- 105 (261)
T ss_dssp C-------CTT-CSCCCEEECSCCSGGGTTTHHHHHHH--SCCEEEEETTCTHHHHSHH-HHHHHHHHHHHHH-------
T ss_pred h-------cCC-CCCCcEEEECCCCccccCCHHHHHHH--hCCeEEECHHHHHHhcCch-hHHHHHHHHHHHH-------
Confidence 0 012 458999999999 999999999873 3689999998765432100 0000000000000
Q ss_pred cccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEE
Q 010890 158 PQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIIS 236 (498)
Q Consensus 158 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~ 236 (498)
..+... . +.......+ .++..+..++.+++ ++++|+++++ ||..|++++.+
T Consensus 106 ---------~~~~~~---~-----~~~~~~~~~---------~~~~~~~~g~~~~~-g~~~i~~~~~pGHt~~~~~~~~- 157 (261)
T 3adr_A 106 ---------GDLYYV---Y-----GGLEKKLDQ---------DKVIEVEGNEEFDL-GGYRMRLIYTPGHARHHMSVLV- 157 (261)
T ss_dssp ---------THHHHH---H-----CCCCSCCCG---------GGEEEECSCCEEEC-SSSEEEEEECTTSCTTCEEEEE-
T ss_pred ---------HHHHHH---h-----cccccCCCc---------cceEecCCCCEEEE-CCEEEEEEECCCCCCccEEEEE-
Confidence 000000 0 000000000 24567788899999 7999999875 69999999964
Q ss_pred eCCeEEEEecCCCCC
Q 010890 237 GAKGNIAYISGSNFA 251 (498)
Q Consensus 237 ~~~~~ivY~TgD~~~ 251 (498)
.+++| |||...
T Consensus 158 ---~~~lf-~GD~~~ 168 (261)
T 3adr_A 158 ---DDFLF-TGDSAG 168 (261)
T ss_dssp ---TTEEE-EETSSC
T ss_pred ---CCEEE-EcCccc
Confidence 37999 999753
No 34
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=99.10 E-value=6.4e-11 Score=115.68 Aligned_cols=169 Identities=13% Similarity=-0.009 Sum_probs=90.3
Q ss_pred CCeEEEEECCEEEEEeCCCCCccc---cccCCCCcccccccccCCccchhhccccCCCCccccccccccccccccccccc
Q 010890 15 PPCHILNVSGFHVLFDCPLDLSAL---TVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (498)
Q Consensus 15 ~sc~ll~~~~~~ILlDcG~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~ 91 (498)
.+||+|+.++..||+|||...... ..|.+. ..+ +...+...+ ...+++
T Consensus 35 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~------~~~----------------~~~~l~~~l-------~~~g~~ 85 (274)
T 3aj3_A 35 VYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKP------IQE----------------KHQTIPGAL-------GLLGLE 85 (274)
T ss_dssp EEEEEEEETTEEEEECCCCCHHHHHHHCGGGCC------BCC----------------GGGSHHHHH-------HHTTCC
T ss_pred EEEEEEEeCCccEEEECCCCcccccCccccCCc------ccC----------------ccccHHHHH-------HHcCCC
Confidence 589999999999999999885310 000000 000 000010000 112345
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
+.+||+|++||. ||+|+++.+. +.+||+++.+.+........ . ...+. . ..|. .. .
T Consensus 86 ~~~i~~VilTH~H~DH~gg~~~~~-----~a~v~~~~~~~~~~~~~~~~----~--~~~~~-~-----~~~~-~~----~ 143 (274)
T 3aj3_A 86 PRDIDVVVNSHFHFDHCGGNKYFP-----HAKKICHRSEVPQACNPQPF----E--HLGYS-D-----LSFS-AE----A 143 (274)
T ss_dssp GGGCCEEECSCCSGGGTTTGGGCT-----TSEEEEETTHHHHHHSCCGG----G--TTTTC-C-----CTTC-HH----H
T ss_pred HHHCCEEEecCcCcccCCchhhCC-----CCEEEECHHHHHHHhCcCCc----c--ccccC-h-----hhhc-cc----c
Confidence 678999999999 9999999872 58999999886543210000 0 00000 0 0010 00 0
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCC-EEEEEEecCCCCccEEEEEEeC-CeEEEEecC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI-LIIKAFSSGLDIGACNWIISGA-KGNIAYISG 247 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~-~~i~~~~aGH~lGs~~~~I~~~-~~~ivY~Tg 247 (498)
+...... . .......+.+ .++..++ +.+++ ++ +++...+ ||+.|++++.++.+ +++++| ||
T Consensus 144 ~~~~~~~-~--~~~~~~~~~~---------~~~~~~~--~~~~l-~g~~~v~~~p-GHt~g~~~~~~~~~~~~~~lf-~G 206 (274)
T 3aj3_A 144 AEARGAT-A--QLLEGTTRAN---------STFEGID--GDVDL-ARGVKLISTP-GHSIGHYSLLVEFPRRKPILF-TI 206 (274)
T ss_dssp HHHHTCG-G--GCCTTCCSTT---------SCEEEEC--SSEEE-ETTEEEEECT-TSSTTCEEEEECCSSSCCEEE-EE
T ss_pred ccccccc-c--ccccccccCC---------CCceEcC--Ccccc-CCEEEEEECC-CCCceeeEEEEECCCCCEEEE-Ee
Confidence 0000000 0 0000000000 1233443 46788 67 7777665 89999999999876 679999 99
Q ss_pred CCCC
Q 010890 248 SNFA 251 (498)
Q Consensus 248 D~~~ 251 (498)
|...
T Consensus 207 D~~~ 210 (274)
T 3aj3_A 207 DAAY 210 (274)
T ss_dssp TTCS
T ss_pred chhh
Confidence 9743
No 35
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=99.09 E-value=4.6e-10 Score=111.44 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=101.5
Q ss_pred CeEEecCCCCCCCCCCeEEEEE--CCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNV--SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAE 78 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~--~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 78 (498)
|+|+.+-.. ..+.+||+|.. ++..+|+|+|.+..... +.. . . . . ...+..
T Consensus 5 m~i~~~~~~--~~~~~~yli~~~~~~~~ilID~g~~~~~~~-------~~~---~--~--~-~---------~~~l~~-- 56 (298)
T 4efz_A 5 MTVEGFFDP--ATCTISYLLFDSGSGECALIDSVLDYDPKS-------GRT---R--T--A-S---------ADQLIA-- 56 (298)
T ss_dssp CEEEEEECT--TTCBEEEEEECTTTCEEEEESCCBEEETTT-------TEE---E--C--H-H---------HHHHHH--
T ss_pred eEEEEEecC--CcccEEEEEEECCCCeEEEEcCCCCccccc-------ccc---C--c--c-c---------HHHHHH--
Confidence 777766544 34789999987 56899999998743100 000 0 0 0 0 000100
Q ss_pred cccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 010890 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESS 156 (498)
Q Consensus 79 ~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~ 156 (498)
..+ . .--+|++||+||. ||++|++.|.+.. ..+||+++.+.++..... . .++.
T Consensus 57 -~l~----~---~g~~i~~Il~TH~H~DH~gg~~~l~~~~--~a~i~~~~~~~~~~~~~~-~----------~~~~---- 111 (298)
T 4efz_A 57 -RVA----A---LGARVRWLLETHVHADHLSAAPYLKTRV--GGEIAIGRHVTRVQDVFG-K----------LFNA---- 111 (298)
T ss_dssp -HHH----H---HTCEEEEEECSSCCSSSBCCHHHHHHHH--CCEEEEETTHHHHHHHHH-H----------HTTC----
T ss_pred -HHH----H---CCCcceEEEECCCchhhhhhHHHHHHHh--CCcEEEChhHHHHHHHHH-H----------hcCC----
Confidence 000 0 1125999999999 9999999998843 689999998876533211 0 0000
Q ss_pred CcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEE
Q 010890 157 GPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII 235 (498)
Q Consensus 157 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I 235 (498)
+.. + . . ... .-.+.+..++.+.+ ++++|+++.+ ||..|+++|.+
T Consensus 112 -------------~~~---~-----~--~-~~~----------~~~~~~~~g~~l~~-g~~~i~vi~tPGHT~g~~~~~~ 156 (298)
T 4efz_A 112 -------------GPA---F-----A--H-DGS----------QFDRLLDDGDTLAL-GALSIRAMHTPGHTPACMTYVV 156 (298)
T ss_dssp -------------CTT---S-----C--S-SST----------TSSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEE
T ss_pred -------------ccc---c-----c--c-ccc----------CCCEEeCCCCEEEE-CCEEEEEEECCCCCcccEEEEE
Confidence 000 0 0 0 000 11256788999999 8999998865 89999999999
Q ss_pred EeCCeE------EEEecCCCC
Q 010890 236 SGAKGN------IAYISGSNF 250 (498)
Q Consensus 236 ~~~~~~------ivY~TgD~~ 250 (498)
..++++ ++| |||+-
T Consensus 157 ~~~~~~~~~~~~~lf-tGD~l 176 (298)
T 4efz_A 157 TEAHAAHDARDAAAF-VGDTL 176 (298)
T ss_dssp EETTCCGGGCBCEEE-CCSSB
T ss_pred CCCcccccCCceEEE-EcCcc
Confidence 987666 999 99974
No 36
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=99.06 E-value=6.1e-10 Score=105.71 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=43.0
Q ss_pred eEEecCCEEEEEEecCCCCc-------cEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 210 EACYNGILIIKAFSSGLDIG-------ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 210 ~~~l~~~~~i~~~~aGH~lG-------s~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
.+++ ++++|+++++.|..+ +++|+|+.++++|+| +||++...... ....+.++|++++
T Consensus 80 ~~~~-~~~~I~~~~~~H~~~~g~~~g~~~g~~i~~~g~~i~~-~GDt~~~~~~~--~~~~~~~~Dvlil 144 (220)
T 1vjn_A 80 AYTV-NGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCH-LGDLGHVLTPA--QVEEIGEIDVLLV 144 (220)
T ss_dssp EEEE-TTEEEEEEEEEEC-------CEEEEEEEEETTEEEEE-CTTCCSCCCHH--HHHHHCCCSEEEE
T ss_pred eEEE-CCEEEEEEeeecCCCCCccCCCcEEEEEEECCeEEEE-eCCCCCcchHH--HHHhhCCCCEEEE
Confidence 4556 789999999999863 589999999999999 99997643210 0123468999999
No 37
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=99.03 E-value=2e-10 Score=112.05 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=90.5
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
+.+|++|+.++..||+|||..... + .+.. .. ...++...
T Consensus 37 ~~~~~li~~~~~~iLID~G~~~~~--------~--------------------------~l~~---~l----~~~g~~~~ 75 (269)
T 1sml_A 37 DLTALLVQTPDGAVLLDGGMPQMA--------S--------------------------HLLD---NM----KARGVTPR 75 (269)
T ss_dssp TBCCEEEEETTEEEEECCBSGGGH--------H--------------------------HHHH---HH----HHTTCCGG
T ss_pred CcEEEEEEeCCceEEEECCCCccH--------H--------------------------HHHH---HH----HHcCCChH
Confidence 468999999999999999975221 0 0000 00 01223455
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+||+||+||. ||+||++.|.+. +..+||+++.+........ ... ..|
T Consensus 76 ~i~~IilTH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~l~~~~---------------~~~---~~~----------- 124 (269)
T 1sml_A 76 DLRLILLSHAHADHAGPVAELKRR--TGAKVAANAESAVLLARGG---------------SDD---LHF----------- 124 (269)
T ss_dssp GEEEEECSCCSHHHHTTHHHHHHH--SSCEEEECHHHHHHHHTTT---------------CSB---TTT-----------
T ss_pred HCcEEEeCCCCccccCCHHHHHHh--cCCeEEECHHHHHHHhcCC---------------ccc---ccc-----------
Confidence 8999999999 999999999873 4689999998765422100 000 000
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEe--CCe-EEEEecC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISG--AKG-NIAYISG 247 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~--~~~-~ivY~Tg 247 (498)
+. ...+.+. ...+.+..++.+++ ++++|+++.+ ||..|++++.++. +++ +.++ +|
T Consensus 125 ----------~~-~~~~~~~--------~~~~~~~~g~~~~~-g~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~l~-~g 183 (269)
T 1sml_A 125 ----------GD-GITYPPA--------NADRIVMDGEVITV-GGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIA-YA 183 (269)
T ss_dssp ----------BT-SSCCCCC--------CCSEECCTTCEEEE-TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEE-EC
T ss_pred ----------cc-ccCCCCC--------CCCeEeCCCCEEEE-CCEEEEEEECCCCCcccEEEEEecccCCceeEEE-Ee
Confidence 00 0001110 12356777889999 7999998765 7999999999875 233 2444 47
Q ss_pred CC
Q 010890 248 SN 249 (498)
Q Consensus 248 D~ 249 (498)
|.
T Consensus 184 D~ 185 (269)
T 1sml_A 184 DS 185 (269)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 38
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=99.02 E-value=5.2e-10 Score=112.79 Aligned_cols=153 Identities=13% Similarity=0.061 Sum_probs=90.9
Q ss_pred CCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCCc
Q 010890 15 PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSF 94 (498)
Q Consensus 15 ~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~ 94 (498)
.+|++|+.++..||+|+|..... .+.. ..+...+ ...++++.+
T Consensus 97 ~n~~LI~~~~~~iLIDtG~~~~~----~~~~--------------------------~~l~~~L-------~~~Gi~~~~ 139 (331)
T 1p9e_A 97 VTGYLVNTGSKLVLVDTGAAGLF----GPTL--------------------------GRLAANL-------KAAGYQPEQ 139 (331)
T ss_dssp EEEEEEECSSCEEEECCCCTTSS----CTTC--------------------------CCHHHHH-------HHTTCCGGG
T ss_pred EEEEEEEECCEEEEEECCCCCcC----Ccch--------------------------hHHHHHH-------HHcCCCHHH
Confidence 45999999999999999987321 0000 0010100 112346678
Q ss_pred ccEEEecCC--CCCCccchhccccCC-ceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 95 IDVVLISSP--MGMLGLPFLTRMEGF-SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 95 ID~IlISH~--DH~g~LP~L~~~~g~-~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
||+|++||. ||+||++.+.. ..| +.+||+++.+.+... +.... . + . +.+ |
T Consensus 140 Id~VilTH~H~DHiggl~~~~~-~~fp~a~v~~~~~~~~~~~----~~~~~-~---~-~-~~~-----~----------- 192 (331)
T 1p9e_A 140 VDEIYITHMHPDHVGGLMVGEQ-LAFPNAVVRADQKEADFWL----SQTNL-D---K-A-PDD-----E----------- 192 (331)
T ss_dssp CCEEECSCCCHHHHGGGEETTE-ESSTTCEEECBHHHHHHHS----CHHHH-T---T-C-SST-----T-----------
T ss_pred CCEEEeCCcccccCCccccccc-ccCCCCEEEECHHHHHHHh----Cchhh-c---c-C-chh-----h-----------
Confidence 999999999 99999985432 234 689999998865421 10000 0 0 0 000 0
Q ss_pred hHhhhhccCCCCCCCCCCch----HHHHHHH--HhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCCeEEEEe
Q 010890 172 ALRKIALGEDGSELGGGCPC----IAHVKDC--ISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYI 245 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l----~~dv~~~--~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~ 245 (498)
...+ .+.+... -.+++.++.++.+. .|+++...+ ||+.|++++.++.++++++|
T Consensus 193 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~--~gi~vi~tp-GHtpG~~~~~i~~~~~~vlf- 252 (331)
T 1p9e_A 193 ----------------SKGFFKGAMASLNPYVKAGKFKPFSGNTDLV--PGIKALASH-GHTPGHTTYVVESQGQKLAL- 252 (331)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHTTCBCCBCSSEECS--TTEEEEECT-TSSTTCEEEEEEETTEEEEE-
T ss_pred ----------------hhHHHHHHHHHhhhhcccCceEEeCCCCEEc--ccEEEEEcC-CCChhCEEEEEEECCcEEEE-
Confidence 0000 0111111 12345555554433 467777654 99999999999998999999
Q ss_pred cCCCCC
Q 010890 246 SGSNFA 251 (498)
Q Consensus 246 TgD~~~ 251 (498)
+||...
T Consensus 253 ~GD~~~ 258 (331)
T 1p9e_A 253 LGDLIL 258 (331)
T ss_dssp CTTSCC
T ss_pred EECccC
Confidence 999854
No 39
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=99.01 E-value=4.1e-10 Score=106.63 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=90.0
Q ss_pred CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccC
Q 010890 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (498)
Q Consensus 13 vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 92 (498)
.+.+|++|+.++..||+|||....... .+.. ... . ...
T Consensus 25 ~~~n~~li~~~~~~iLiD~G~~~~~~~---------------------------------~~~~---~l~---~---~~g 62 (223)
T 1m2x_A 25 YAANAVYLVTDKGVVVIDCPWGEDKFK---------------------------------SFTD---EIY---K---KHG 62 (223)
T ss_dssp EEEEEEEEEETTEEEEESCCSSGGGHH---------------------------------HHHH---HHH---H---HHC
T ss_pred ccccEEEEEeCCEEEEEeCCCChhHHH---------------------------------HHHH---HHH---H---HhC
Confidence 357899999999999999998632100 0000 000 0 001
Q ss_pred CcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhch
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (498)
.+|++|++||. ||+||++.+.+ ...+||+++.+.+..+ +.
T Consensus 63 ~~i~~vi~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~----~~------------------------------- 104 (223)
T 1m2x_A 63 KKVIMNIATHSHDDRAGGLEYFGK---IGAKTYSTKMTDSILA----KE------------------------------- 104 (223)
T ss_dssp CCEEEEECSSSSTTTTTTHHHHHH---TTCEEEEEHHHHHHHH----HT-------------------------------
T ss_pred CCeEEEEeccCCccccCchhhHhh---CCCeEEEcHHHHHHHH----hc-------------------------------
Confidence 37999999998 99999999987 3689999998865421 10
Q ss_pred hhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEE--ecCCCCccEEEEEEeCCeEEEEecCC
Q 010890 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGS 248 (498)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~--~aGH~lGs~~~~I~~~~~~ivY~TgD 248 (498)
+. . .....+..++.+.+ ++.+++++ ..||..|++++.+. +.+++| |||
T Consensus 105 -----------~~---~------------~~~~~~~~g~~~~~-g~~~i~~~~~~pgHt~~~~~~~~~--~~~~lf-~GD 154 (223)
T 1m2x_A 105 -----------NK---P------------RAQYTFDNNKSFKV-GKSEFQVYYPGKGHTADNVVVWFP--KEKVLV-GGC 154 (223)
T ss_dssp -----------TC---C------------CCSEEESSCEEEEE-TTEEEEEECCCSSSSSSCCEEEET--TTTEEE-EET
T ss_pred -----------Cc---c------------CCceecCCCceEEE-CCEEEEEEecCCCCCCCCEEEEEC--CCCEEE-Eec
Confidence 00 0 01235667888899 79999998 47999999999874 568999 999
Q ss_pred CC
Q 010890 249 NF 250 (498)
Q Consensus 249 ~~ 250 (498)
..
T Consensus 155 ~~ 156 (223)
T 1m2x_A 155 II 156 (223)
T ss_dssp TS
T ss_pred cc
Confidence 64
No 40
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=98.99 E-value=3.3e-10 Score=121.99 Aligned_cols=199 Identities=12% Similarity=0.015 Sum_probs=107.2
Q ss_pred CeEEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW 80 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 80 (498)
|+|+++.-+ .-.++|++|+.++..||+|||....... +..++.|-....... ....-...+ .+.
T Consensus 6 ~~I~~ldvG--~gqg~~~lI~~~~~~iLID~G~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~l---~~~ 69 (547)
T 2bib_A 6 NKIHFINVQ--EGGSDAIILESNGHFAMVDTGEDYDFPD-------GSDSRYPWREGIETS----YKHVLTDRV---FRR 69 (547)
T ss_dssp EEEEEECBS--SSBCCEEEEEETTEEEEEECCCCSCCCC-------SSSTTSCCCTTCCCC----GGGCCHHHH---HHH
T ss_pred ceEEEEEcC--CCCceEEEEEeCCeEEEEeCCCCCcccc-------ccccccccccccccc----ccchhHHHH---HHH
Confidence 578888654 1247899999999999999998743100 000000000000000 000000001 111
Q ss_pred cccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 010890 81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP 158 (498)
Q Consensus 81 ~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~ 158 (498)
. ....+.+||+|||||. ||+|+++.|.+... ..+||+++.+........ .
T Consensus 70 L------~~~gi~~id~vilTH~H~DHiggl~~l~~~~~-~~~i~~~~~~~~~~~~~~---------------------~ 121 (547)
T 2bib_A 70 L------KELSVQKLDFILVTHTHSDHIGNVDELLSTYP-VDRVYLKKYSDSRITNSE---------------------R 121 (547)
T ss_dssp H------HHTTCCCBSCEECCCSCHHHHTTHHHHHHHSC-BSEEECCCCCGGGBSCGG---------------------G
T ss_pred H------HhcCcccccEEEEcCCCccccCCHHHHHHhCC-ccEEEECcccccccCChH---------------------H
Confidence 1 1124568999999999 99999999987332 236998875533210000 0
Q ss_pred ccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHH--hhce----eecCCCeEEecCCEEEEEEec---CC---
Q 010890 159 QWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCI--SKVQ----TLRFGEEACYNGILIIKAFSS---GL--- 226 (498)
Q Consensus 159 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~--~~i~----~v~y~e~~~l~~~~~i~~~~a---GH--- 226 (498)
.|..... .+++.+.+ ..+. .+..++.+++ ++++|++++. .|
T Consensus 122 ~~~~~~~--------------------------~~~~~~~~~~~g~~~~~~~~~~g~~~~~-g~~~i~~l~~~~~~h~~~ 174 (547)
T 2bib_A 122 LWDNLYG--------------------------YDKVLQTATETGVSVIQNITQGDAHFQF-GDMDIQLYNYENETDSSG 174 (547)
T ss_dssp CTTHHHH--------------------------HHHHHHHHHHTTCEEECSCCTTTTEEEE-TTEEEEEESCSCCBCTTS
T ss_pred HHhHHHH--------------------------HHHHHHHHHHhCCeEEEeecCCCceEec-CCeeEEEecCccccCccc
Confidence 0000000 01111111 0111 2356778899 7999999973 23
Q ss_pred --------CCccEEEEEEeCCeEEEEecCCCCCCCCCCCCcccCCCCCCEEEE
Q 010890 227 --------DIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 271 (498)
Q Consensus 227 --------~lGs~~~~I~~~~~~ivY~TgD~~~~~~~~~~~~~~~~~~D~LI~ 271 (498)
..+|++++|+.++.+++| |||+.........-......+|+|++
T Consensus 175 ~~~~~~~~n~~S~vl~i~~~~~~iLf-tGD~~~~~~~e~~l~~~~~~~DvLkv 226 (547)
T 2bib_A 175 ELKKIWDDNSNSLISVVKVNGKKIYL-GGDLDNVHGAEDKYGPLIGKVDLMKF 226 (547)
T ss_dssp CBCCBSSGGGGCCEEEEEETTEEEEE-CTTCCSTTSHHHHHHHHHCCCSEEEC
T ss_pred cccccCCCCCCcEEEEEEECCEEEEe-cCCccchhhhhhhhcccccceeEEEe
Confidence 257899999999999999 99996531110000111347999998
No 41
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=98.99 E-value=3.2e-10 Score=116.99 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=72.8
Q ss_pred cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+..+||+|++||. ||+||++.|.+... ..+||+++.+.+..+..+
T Consensus 68 ~~~~i~~iiiTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~~~~~~~~-------------------------------- 114 (402)
T 1e5d_A 68 DPKKIDYLVIQHLELDHAGALPALIEACQ-PEKIFTSSLGQKAMESHF-------------------------------- 114 (402)
T ss_dssp CGGGCCEEEECCCSHHHHTTHHHHHHHHC-CSEEEEEHHHHHHHHHHH--------------------------------
T ss_pred CcccCCEEEeCCCCccccccHHHHHHHCC-CCEEEEChHHHHHHHHHh--------------------------------
Confidence 4568999999999 99999999987321 589999998876533210
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec--CCCCccEEEEEEeCCeEEEEec
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a--GH~lGs~~~~I~~~~~~ivY~T 246 (498)
+. . . ..++.++.++.+++ ++++++++++ ||..|++++.+ .+.+++| |
T Consensus 115 -------------~~-~-~------------~~~~~~~~g~~~~~-g~~~~~~~~~p~gH~~~~~~~~~--~~~~~l~-~ 163 (402)
T 1e5d_A 115 -------------HY-K-D------------WPVQVVKHGETLSL-GKRTVTFYETRMLHWPDSMVSWF--ADEKVLI-S 163 (402)
T ss_dssp -------------CC-S-S------------CCEEEECTTCEEEC-SSCEEEEEECTTSSSTTCEEEEE--TTTTEEE-E
T ss_pred -------------CC-C-C------------CceEEcCCCCEEEE-CCCEEEEEeCCCCCCCCcEEEEE--CCCCEEE-e
Confidence 00 0 0 13556788999999 7888888877 79999998766 5678999 9
Q ss_pred CCCC
Q 010890 247 GSNF 250 (498)
Q Consensus 247 gD~~ 250 (498)
||+.
T Consensus 164 GD~~ 167 (402)
T 1e5d_A 164 NDIF 167 (402)
T ss_dssp ETTT
T ss_pred cccc
Confidence 9983
No 42
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.96 E-value=1.1e-10 Score=112.18 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=90.5
Q ss_pred CCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccccccccccccc
Q 010890 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (498)
Q Consensus 12 ~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~ 91 (498)
..+.+||+|+.++..||+|||....... .+.. ... . ..
T Consensus 45 ~~~~n~~li~~~~~~iLID~G~~~~~~~---------------------------------~l~~---~l~---~---~~ 82 (243)
T 4hl2_A 45 AVASNGLIVRDGGRVLVVDTAWTDDQTA---------------------------------QILN---WIK---Q---EI 82 (243)
T ss_dssp EEEEEEEEEEETTEEEEESCCSSHHHHH---------------------------------HHHH---HHH---H---HT
T ss_pred cccceEEEEEECCcEEEEECCCCCccHH---------------------------------HHHH---HHH---H---hh
Confidence 4568999999999999999997532100 0000 000 0 00
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
..+|++|++||. ||+||++.+.+ . +.+||+++.+.++.... .... ..+
T Consensus 83 ~~~i~~vi~TH~H~DH~gg~~~l~~-~--~~~v~~~~~~~~~~~~~-----------------~~~~-~~~--------- 132 (243)
T 4hl2_A 83 NLPVALAVVTHAHQDKMGGMDALHA-A--GIATYANALSNQLAPQE-----------------GMVA-AQH--------- 132 (243)
T ss_dssp CCCEEEEEECSSSHHHHTTHHHHHH-T--TCEEEEEHHHHHHGGGT-----------------TCCC-CSE---------
T ss_pred CCCeeEEEECCCCccccCCHHHHHh-C--CCeEEECHHHHHHHhcc-----------------cccc-ccc---------
Confidence 226999999999 99999999987 2 78999999876532100 0000 000
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 249 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~ 249 (498)
...+ .....+..++.+++ +++++.....||..|++++.+. +.+++| |||.
T Consensus 133 ---------------~~~~-----------~~~~~~~~g~~~~~-g~~~v~~~~pGHt~g~~~~~~~--~~~~lf-~GD~ 182 (243)
T 4hl2_A 133 ---------------SLTF-----------AANGWVEPATAPNF-GPLKVFYPGPGHTSDNITVGID--GTDIAF-GGCL 182 (243)
T ss_dssp ---------------EECB-----------CTTSBBCGGGSTTC-TTEEEECCCSSSSTTCCEEEET--TTTEEE-CTTT
T ss_pred ---------------cccc-----------ccceEecCCCeEEE-CCEEEEeCCCCCCcCCEEEEEc--CCCEEE-Ecce
Confidence 0000 11234566777888 7899955688999999999885 567999 9997
Q ss_pred CC
Q 010890 250 FA 251 (498)
Q Consensus 250 ~~ 251 (498)
-.
T Consensus 183 ~~ 184 (243)
T 4hl2_A 183 IK 184 (243)
T ss_dssp CC
T ss_pred ee
Confidence 43
No 43
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=98.96 E-value=1.4e-10 Score=122.62 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=96.9
Q ss_pred CeEEecCCCCCCCCCCeEEE--EECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHIL--NVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAE 78 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll--~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 78 (498)
|+|+.+-.+ ..+.+||+| +.++..||+|+|.....+.. .+ .
T Consensus 4 m~i~~~~~~--~~~~n~yli~~~~~~~~ilID~g~~~~~~~~--------------------------------~l-~-- 46 (474)
T 3tp9_A 4 MYLRRFYDE--GLAHASYLVGCQETGEACVIDPARDVEPYLL--------------------------------TA-K-- 46 (474)
T ss_dssp EEEEEEEET--TTTEEEEEEEETTTCEEEEESCCSCCHHHHH--------------------------------HH-H--
T ss_pred eEEEEEecC--CceeEEEEEEECCCCEEEEEcCCCChHHHHH--------------------------------HH-H--
Confidence 566666433 246899999 66789999999977432110 00 0
Q ss_pred cccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 010890 79 PWYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESS 156 (498)
Q Consensus 79 ~~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~ 156 (498)
. ...+|++||+||. ||++|++.|.+. +..+||+++.+...
T Consensus 47 -~----------~~~~i~~Il~TH~H~DH~gg~~~l~~~--~~~~i~~~~~~~~~------------------------- 88 (474)
T 3tp9_A 47 -R----------EGLRIVAALETHIHADFVSGAREMADR--AGAAICVSDEGPPE------------------------- 88 (474)
T ss_dssp -H----------HTCEEEEEECSSCCSSSCCCHHHHHHH--HCCEEEEECCSCGG-------------------------
T ss_pred -H----------cCCeeEEEEcCcCchhhhCCHHHHHHH--HCCcEEEcCcchhh-------------------------
Confidence 0 1126999999999 999999999874 46899999764211
Q ss_pred CcccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEE
Q 010890 157 GPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII 235 (498)
Q Consensus 157 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I 235 (498)
|.. .+.+. ...+.+..++.+.+ ++++|+++.+ ||..|++.+.+
T Consensus 89 ---~~~------------------------~~~~~--------~~~~~~~~g~~~~~-g~~~i~~i~tPGHt~g~~~~~~ 132 (474)
T 3tp9_A 89 ---WKS------------------------EYVKA--------YPHRLLKDGDELHF-GNVRIVVMHTPGHTPEHVSYLL 132 (474)
T ss_dssp ---GCC------------------------GGGGG--------SSEEEECTTCEEEE-TTEEEEEEECCSSSSSCEEEEE
T ss_pred ---hcc------------------------ccccc--------ccceECCCCCEEEE-CCEEEEEEECCCCCCCCEEEEE
Confidence 000 00000 12356788999999 7999998866 89999999999
Q ss_pred EeCCe-----EEEEecCCCC
Q 010890 236 SGAKG-----NIAYISGSNF 250 (498)
Q Consensus 236 ~~~~~-----~ivY~TgD~~ 250 (498)
...++ +++| |||+-
T Consensus 133 ~~~~~~~~~~~~lf-tGD~l 151 (474)
T 3tp9_A 133 YDGKTSPDVPMALF-SGDFV 151 (474)
T ss_dssp EETTTEEEEEEEEE-EETSE
T ss_pred ecCCCCCCCceEEE-eCCcc
Confidence 87655 8999 99984
No 44
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=98.96 E-value=2.7e-09 Score=105.85 Aligned_cols=154 Identities=12% Similarity=0.024 Sum_probs=93.0
Q ss_pred CCCeEEE-EECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccc-c
Q 010890 14 FPPCHIL-NVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLW-N 91 (498)
Q Consensus 14 g~sc~ll-~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~-~ 91 (498)
+.+||++ ..++..+|+|||..... .... ..+ . . . + .
T Consensus 23 ~~n~~li~~~~~~~iLID~G~~~~~--------~~~~----------------------~~l-~---------~-~-~~~ 60 (303)
T 2vw8_A 23 QVPVFLLRLGEASWALVEGGISRDA--------ELVW----------------------ADL-C---------R-W-VAD 60 (303)
T ss_dssp TSCEEEEEEETTEEEEECCCCGGGH--------HHHH----------------------HHH-H---------H-H-CSC
T ss_pred CceEEEEEeCCCceEEEECCCCCcH--------HHHH----------------------HHH-H---------H-H-hcC
Confidence 5899999 48889999999986311 0000 001 0 0 0 1 3
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
..+|++|++||. ||+||++.+.+.. ...+||+++.+.+........ .......+.. . ..|..
T Consensus 61 ~~~i~~Ii~TH~H~DH~gg~~~l~~~~-~~a~v~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----~~~~~------- 124 (303)
T 2vw8_A 61 PSQVHYWLITHKHYDHCGLLPYLCPRL-PNVQVLASERTCQAWKSESAV--RVVERLNRQL--L----RAEQR------- 124 (303)
T ss_dssp GGGEEEEECCCCSTTTTTTHHHHGGGC-TTCEEEEEHHHHHHTTCHHHH--HHHHHHHHHT--C----CTTCC-------
T ss_pred cccceEEEeccCCccccCCHHHHHHhC-CCCeEEECHHHHHHHhccchh--hHHHHHHHHH--H----Hhhcc-------
Confidence 458999999999 9999999998732 268999999987654321100 0000000000 0 00000
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCC-EEEEEEec-CCCCccEEEEEEeCCeEEEEecC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI-LIIKAFSS-GLDIGACNWIISGAKGNIAYISG 247 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~-~~i~~~~a-GH~lGs~~~~I~~~~~~ivY~Tg 247 (498)
... ...+.+ ..+..+..++.+++ ++ .+++++.+ ||..|++++.+. +.+++| ||
T Consensus 125 -----------~~~-~~~~~~---------~~~~~~~~g~~~~l-g~g~~l~~i~~pGHt~g~~~~~~~--~~~~lf-~G 179 (303)
T 2vw8_A 125 -----------LPE-ACAWDA---------LPVRAVADGEWLEL-GPRHRLQVIEAHGHSDDHVVFYDV--RRRRLF-CG 179 (303)
T ss_dssp -----------CCC-CCCGGG---------SCEEEECTTCEEEE-ETTEEEEEEECTTSSTTCEEEEET--TTTEEE-EE
T ss_pred -----------ccc-ccCCCC---------CCceEcCCCCEEec-CCCeEEEEEECCCCCcccEEEEEC--CCCEEE-Ec
Confidence 000 000100 12456778889999 55 88887765 999999998884 568999 99
Q ss_pred CCC
Q 010890 248 SNF 250 (498)
Q Consensus 248 D~~ 250 (498)
|.-
T Consensus 180 D~~ 182 (303)
T 2vw8_A 180 DAL 182 (303)
T ss_dssp TTT
T ss_pred Ccc
Confidence 973
No 45
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=98.95 E-value=9.1e-10 Score=108.74 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=92.4
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
+.+|++|+.++..||+|||..... .. +.... ....+...
T Consensus 57 ~~~~~li~~~~~~iLiD~G~~~~~--------~~--------------------------~~~~l-------~~~g~~~~ 95 (303)
T 4ax1_B 57 GISALLVTSDAGHILVDAATPQAG--------PQ--------------------------ILANI-------RALGFRPE 95 (303)
T ss_dssp SSCCEEECCTTCEEEECCBSTTCH--------HH--------------------------HHHHH-------HHTTCCGG
T ss_pred CceEEEEEeCCcEEEEECCCcccH--------HH--------------------------HHHHH-------HHcCCCHH
Confidence 579999999999999999975211 00 00000 01223455
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+||+|++||. ||+|+++.+.+. +..+||+++.+......... ....+.| ..
T Consensus 96 ~i~~ii~TH~H~DH~gg~~~l~~~--~~~~v~~~~~~~~~l~~~~~----------------~~~~~~~------~~--- 148 (303)
T 4ax1_B 96 DVRAIVFSHEHFDHAGSLAELQKA--TGAPVYARAPAIDTLKRGLP----------------DRTDPNF------EV--- 148 (303)
T ss_dssp GEEEEECSCSSHHHHTTHHHHHHH--HCCCEEEEHHHHHHHHHTSC----------------CTTSTTG------GG---
T ss_pred HCcEEEcCCCCccccCCHHHHHhh--cCCEEEEcHHHHHHHhcccc----------------Ccccccc------cc---
Confidence 7999999999 999999999873 36899999988765322100 0000000 00
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEe-cCCCCccEEEEEEeCC---eEEEEecC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAK---GNIAYISG 247 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~-aGH~lGs~~~~I~~~~---~~ivY~Tg 247 (498)
.. .+.+. ...+.+..++.+++ ++.+|+++. .||..|++.+.++... ...++ +|
T Consensus 149 ---------~~----~~~~~--------~~~~~~~~g~~~~~-g~~~v~~~~~pgHt~g~~~~~~~~~~~~~~~~~l-~g 205 (303)
T 4ax1_B 149 ---------AE----PVAPV--------ANIVTLADDGVVSV-GPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMV-YA 205 (303)
T ss_dssp ---------CC----CCCCC--------SCEEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEE-EC
T ss_pred ---------cc----CcCCC--------CCcEEeCCCCEEEE-CCeEEEEEeCCCCCccceEEEEEecCCCceeEEE-Ee
Confidence 00 00000 24567888999999 799999886 6799999999987531 12344 47
Q ss_pred CC
Q 010890 248 SN 249 (498)
Q Consensus 248 D~ 249 (498)
|.
T Consensus 206 D~ 207 (303)
T 4ax1_B 206 DS 207 (303)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 46
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=98.95 E-value=1.3e-09 Score=108.79 Aligned_cols=167 Identities=15% Similarity=0.123 Sum_probs=96.5
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
+.+||+|+.++..+|+|+|....... ..+.. .. ...++...
T Consensus 21 ~~n~~li~~~~~~ilID~G~~~~~~~--------------------------------~~l~~---~l----~~~g~~~~ 61 (317)
T 2zo4_A 21 TVNLYLLQGAGEVALVDTALGTRAAR--------------------------------GALEL---HL----AELGLCFQ 61 (317)
T ss_dssp EEEEEEEEETTEEEEECCCCSSHHHH--------------------------------HHHHH---HH----HHTTCCGG
T ss_pred cEEEEEEEcCCceEEEECCCCCHHHH--------------------------------HHHHH---HH----HHcCCChh
Confidence 47899999998999999998743100 00000 00 01123456
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHH---HHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEEL---ICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+|++|++||. ||+||++.+.+. ..+||+++.+........... .......-...|..+. + ...
T Consensus 62 ~i~~Vi~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~-----~~~ 129 (317)
T 2zo4_A 62 DVKTILLTHHHPDHYGLSGFFEGL---GARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEG----A-----LQG 129 (317)
T ss_dssp GCCEEEESCCSHHHHTTHHHHHHT---TCEEEEEGGGTTTHHHHHHCTTTSHHHHHHHHHHTTCCC--------------
T ss_pred hcCEEEEcCCCCcccccHHHHHhC---CCEEEEcHHHHHHHHhhhhhhhhHHHHHHHHHHHcCCCHH----H-----HHH
Confidence 8999999999 999999999873 689999998876543321100 0000000000000000 0 000
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEeCCeEEEEecC
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISG 247 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~~~~ivY~Tg 247 (498)
+........ .. . . + ......+.-++.+++ ++.+++++.+ ||+.|++++.+ .+.+++| ||
T Consensus 130 ~~~~~~~~~---~~--~-~--~--------~~~~~~~~~g~~l~~-gg~~~~~i~tpGHt~g~~~~~~--~~~~~lf-~G 189 (317)
T 2zo4_A 130 IRETVEKTR---ER--V-H--P--------PQNPLPLRDGEALEV-AGKRLRVLWTPGHADGHAAFYL--EEEGVLL-AG 189 (317)
T ss_dssp --CHHHHHH---TT--C-C--C--------CSSCEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEE--TTTTEEE-EE
T ss_pred HHHhccccc---cc--C-C--C--------CCCceEECCCCEEEe-CCceEEEEECCCCCcccEEEEe--CCCCEEE-EC
Confidence 000000000 00 0 0 0 013456778899999 7999999877 99999999875 5678999 99
Q ss_pred CCCC
Q 010890 248 SNFA 251 (498)
Q Consensus 248 D~~~ 251 (498)
|.-.
T Consensus 190 D~~~ 193 (317)
T 2zo4_A 190 DALL 193 (317)
T ss_dssp TSCC
T ss_pred CEec
Confidence 9743
No 47
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=98.94 E-value=7.4e-10 Score=106.90 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=66.6
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
.|++||+||. ||++|++.|.+. ....+||+++.+..
T Consensus 53 ~i~~Il~TH~H~DH~gg~~~l~~~-~~~~~v~~~~~~~~----------------------------------------- 90 (245)
T 2gcu_A 53 KLIYAMNTHVHADHVTGTGLLKTK-LPGVKSVISKASGS----------------------------------------- 90 (245)
T ss_dssp EEEEEECSSCCSSSCBSHHHHHHH-STTCEEEEEGGGCC-----------------------------------------
T ss_pred eeeEEEeCCCChhhhhhHHHHHHh-CCCCeEEecccccc-----------------------------------------
Confidence 5999999999 999999999862 23589999875310
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEeCC----eEEEEec
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAK----GNIAYIS 246 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~~----~~ivY~T 246 (498)
+ ..+.+..++.+++ ++++|+++.+ ||..|++++.+...+ .+++| |
T Consensus 91 ----------------~------------~~~~~~~g~~~~~-g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~~~~lf-t 140 (245)
T 2gcu_A 91 ----------------K------------ADLFLEPGDKVSI-GDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAF-T 140 (245)
T ss_dssp ----------------C------------CSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEE-E
T ss_pred ----------------c------------CCEEcCCCCEEEE-CCEEEEEEECCCCCCCCEEEEECCccccccccEEE-E
Confidence 0 1234667888999 7899998865 999999999997652 48999 9
Q ss_pred CCCCC
Q 010890 247 GSNFA 251 (498)
Q Consensus 247 gD~~~ 251 (498)
||+..
T Consensus 141 GD~~~ 145 (245)
T 2gcu_A 141 GDAVL 145 (245)
T ss_dssp ETTSB
T ss_pred CCccc
Confidence 99743
No 48
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=98.91 E-value=1.8e-09 Score=107.90 Aligned_cols=88 Identities=11% Similarity=0.117 Sum_probs=68.5
Q ss_pred CcccEEEecCC--CCCCccchhccccC-----CceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhH
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRMEG-----FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 165 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~g-----~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~ 165 (498)
.+|++||+||. ||+||++.|.+... ...+||+++... +
T Consensus 83 ~~i~~IllTH~H~DH~gg~~~l~~~~~~~~~~~~~~v~~~~~~~--------------------~--------------- 127 (311)
T 2p18_A 83 YTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDS--------------------I--------------- 127 (311)
T ss_dssp CEEEEEEESSSSHHHHTTHHHHHHHHHSCC--CCCEEEEEGGGT--------------------C---------------
T ss_pred CCccEEEeCCCCccccCCHHHHHHhhhhcccCCCCEEEEechhc--------------------C---------------
Confidence 48999999999 99999999987321 147899886430 0
Q ss_pred HhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEeCC---e-
Q 010890 166 LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAK---G- 240 (498)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~~---~- 240 (498)
+ .....+..++.+.+ ++++|+++.+ ||..|+++|.++.++ .
T Consensus 128 ----~-----------------------------~~~~~l~~g~~l~l-g~~~l~vi~tPGHT~g~i~~~~~~~~~~~~~ 173 (311)
T 2p18_A 128 ----P-----------------------------AVTKPVREGDRVQV-GDLSVEVIDAPCHTRGHVLYKVQHPQHPNDG 173 (311)
T ss_dssp ----T-----------------------------TCSEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEECTTCGGGC
T ss_pred ----C-----------------------------CCceEeCCCCEEEE-CCeEEEEEECCCCCcccEEEEEecCCcCCcC
Confidence 0 01345677889999 7899999887 999999999998766 6
Q ss_pred EEEEecCCCC
Q 010890 241 NIAYISGSNF 250 (498)
Q Consensus 241 ~ivY~TgD~~ 250 (498)
+++| |||+.
T Consensus 174 ~~lf-tGD~l 182 (311)
T 2p18_A 174 VALF-TGDTM 182 (311)
T ss_dssp EEEE-EETTE
T ss_pred CEEE-EcCcc
Confidence 9999 99974
No 49
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=98.89 E-value=1.8e-09 Score=102.82 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=89.8
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
+.+||+|+.++..||+|||....... .+.. ... .....
T Consensus 36 ~~n~~li~~~~~~iLiD~G~~~~~~~---------------------------------~~~~---~l~------~~~~~ 73 (232)
T 1a7t_A 36 PSNGMIVINNHQAALLDTPINDAQTE---------------------------------MLVN---WVT------DSLHA 73 (232)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHH---------------------------------HHHH---HHH------HHHCC
T ss_pred cceEEEEEeCCEEEEEeCCCCHHHHH---------------------------------HHHH---HHH------HhcCC
Confidence 47899999999999999998632100 0000 000 00134
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+|++|++||. ||+||++.+.+ ...+||+++.+.++.+. .
T Consensus 74 ~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~~----~-------------------------------- 114 (232)
T 1a7t_A 74 KVTTFIPNHWHGDCIGGLGYLQR---KGVQSYANQMTIDLAKE----K-------------------------------- 114 (232)
T ss_dssp EEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHHH----H--------------------------------
T ss_pred CeEEEEeCCCCccccCCHHHHHh---CCCeEEEcHHHHHHHHh----c--------------------------------
Confidence 8999999999 99999999987 36899999988654211 0
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEe--cCCCCccEEEEEEeCCeEEEEecCCC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS--SGLDIGACNWIISGAKGNIAYISGSN 249 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~--aGH~lGs~~~~I~~~~~~ivY~TgD~ 249 (498)
+. . .....+..++.+.+ ++.+++++. .||..|++++.+. +.+++| |||+
T Consensus 115 ----------~~-~--------------~~~~~~~~g~~~~~-g~~~i~~~~~~pgHt~g~~~~~~~--~~~~lf-~GD~ 165 (232)
T 1a7t_A 115 ----------GL-P--------------VPEHGFTDSLTVSL-DGMPLQCYYLGGGHATDNIVVWLP--TENILF-GGCM 165 (232)
T ss_dssp ----------TC-C--------------CCSEEESSEEEEEE-TTEEEEEECCCCSSSTTCCEEEET--TTTEEE-EETT
T ss_pred ----------CC-C--------------CCceecCCCCEEEE-CCeEEEEEeCCCCCCCCCEEEEEC--CCCEEE-EcCc
Confidence 00 0 01234566778888 789999984 7999999999874 457999 9997
Q ss_pred CC
Q 010890 250 FA 251 (498)
Q Consensus 250 ~~ 251 (498)
..
T Consensus 166 ~~ 167 (232)
T 1a7t_A 166 LK 167 (232)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 50
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=98.89 E-value=2.7e-09 Score=101.25 Aligned_cols=127 Identities=19% Similarity=0.117 Sum_probs=88.4
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
+.+|++++.++..+|+|||....... .+.. ... . ....
T Consensus 40 ~~n~~li~~~~~~iliD~G~~~~~~~---------------------------------~~~~---~l~---~---~~~~ 77 (227)
T 1mqo_A 40 PSNGLVLNTSKGLVLVDSSWDDKLTK---------------------------------ELIE---MVE---K---KFQK 77 (227)
T ss_dssp EEEEEEEEETTEEEEESCCSSHHHHH---------------------------------HHHH---HHH---H---HHTS
T ss_pred cceEEEEEeCCeEEEEECCCChHHHH---------------------------------HHHH---HHH---H---hcCC
Confidence 57999999999999999998742100 0000 000 0 0145
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+|++|++||. ||+||++.+.+. ..+||+++.+.++.+. .
T Consensus 78 ~i~~ii~TH~H~DH~gg~~~l~~~---~~~v~~~~~~~~~~~~----~-------------------------------- 118 (227)
T 1mqo_A 78 RVTDVIITHAHADRIGGIKTLKER---GIKAHSTALTAELAKK----N-------------------------------- 118 (227)
T ss_dssp CEEEEECCCCSHHHHTTHHHHHHH---TCEEECBHHHHHHHHH----T--------------------------------
T ss_pred CceEEEeCCCCchhccchHHHhhC---CcEEEeccchHHHHHh----c--------------------------------
Confidence 8999999999 999999999873 5899999987653210 0
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEE--ecCCCCccEEEEEEeCCeEEEEecCCC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGSN 249 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~--~aGH~lGs~~~~I~~~~~~ivY~TgD~ 249 (498)
+ +. ..+..+..++.+++ ++++|+++ ..||..|++++.+. +.+++| |||.
T Consensus 119 ----------~-----~~----------~~~~~~~~~~~~~~-g~~~i~~~~~~pgHt~g~~~~~~~--~~~~lf-~GD~ 169 (227)
T 1mqo_A 119 ----------G-----YE----------EPLGDLQTVTNLKF-GNMKVETFYPGKGHTEDNIVVWLP--QYNILV-GGCL 169 (227)
T ss_dssp ----------T-----CC----------CCCCCBCSEEEEEE-TTEEEEEECCCCSSSSSCCEEEET--TTTEEE-EETT
T ss_pred ----------C-----CC----------CCccccCCCCeeeE-CCEEEEEEecCCCCCCCCEEEEEC--CCCEEE-Eeee
Confidence 0 00 01223445677888 78999986 46999999999874 568999 9997
Q ss_pred C
Q 010890 250 F 250 (498)
Q Consensus 250 ~ 250 (498)
-
T Consensus 170 ~ 170 (227)
T 1mqo_A 170 V 170 (227)
T ss_dssp S
T ss_pred e
Confidence 4
No 51
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=98.87 E-value=3e-09 Score=101.96 Aligned_cols=117 Identities=11% Similarity=0.111 Sum_probs=70.9
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
...+ +|++||. ||+||++.+.+ +..+||+++.+.+............. .+++. . ..+
T Consensus 67 ~~~~-~vi~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~----------~-~~~--- 125 (246)
T 2fhx_A 67 PKKV-VAINTHFHLDGTGGNEIYKK---MGAETWSSDLTKQLRLEENKKDRIKA---AEFYK----------N-EDL--- 125 (246)
T ss_dssp CSEE-EEECCSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHHHHHHHHHHHH---HHHCC----------C-HHH---
T ss_pred CCcE-EEEeCCCCccccChHHHHhh---cCCEEEEcHHHHHHHHhcchhhhHHH---Hhhhc----------c-ccc---
Confidence 3345 7999999 99999999976 36899999999876544322111000 00000 0 000
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEe--cCCCCccEEEEEEeCCeEEEEecC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS--SGLDIGACNWIISGAKGNIAYISG 247 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~--aGH~lGs~~~~I~~~~~~ivY~Tg 247 (498)
....... .. ..+ .++..+..++.+++ ++.+++++. .||+.|++++.+. +.+++| ||
T Consensus 126 ~~~~~~~----~~-----~~~---------~~~~~~~~g~~l~~-g~~~i~~~~~~pGHt~g~~~~~~~--~~~~lf-~G 183 (246)
T 2fhx_A 126 KRRILSS----HP-----VPA---------DNVFDLKQGKVFSF-SNELVEVSFPGPAHSPDNVVVYFP--KKKLLF-GG 183 (246)
T ss_dssp HHHHHHT----CC-----CCC---------SEEECTTTCEEEEE-TTEEEEEECCCCSSSTTCCEEEET--TTTEEE-EE
T ss_pred hhhhccc----cc-----CCC---------CceeecCCCCEEEE-CCEEEEEEeCCCCCCCCCEEEEEc--CCCEEE-EC
Confidence 0000000 00 000 12334566788888 789999873 6999999998874 568999 99
Q ss_pred CCCC
Q 010890 248 SNFA 251 (498)
Q Consensus 248 D~~~ 251 (498)
|.-.
T Consensus 184 D~~~ 187 (246)
T 2fhx_A 184 CMIK 187 (246)
T ss_dssp TTCC
T ss_pred CEec
Confidence 9743
No 52
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=98.87 E-value=2.2e-09 Score=101.40 Aligned_cols=88 Identities=7% Similarity=-0.093 Sum_probs=61.6
Q ss_pred EecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccccc
Q 010890 4 TCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKT 83 (498)
Q Consensus 4 ~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 83 (498)
..+.++ ...+.+||+|+.++..||+|+|....... .+.. ..
T Consensus 13 ~~~~~~-~~~~~n~~li~~~~~~iLiD~G~~~~~~~---------------------------------~~~~---~l-- 53 (227)
T 3iog_A 13 YVVEDN-YYVQENSMVYFGAKGVTVVGATWTPDTAR---------------------------------ELHK---LI-- 53 (227)
T ss_dssp EEEEEC-SSSCEEEEEEECSSCEEEESCCSSHHHHH---------------------------------HHHH---HH--
T ss_pred EEEECC-CcccCcEEEEEeCCeEEEEECCCChHHHH---------------------------------HHHH---HH--
Confidence 344433 34578999999999999999997532100 0000 00
Q ss_pred ccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHH
Q 010890 84 VNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMME 137 (498)
Q Consensus 84 ~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~ 137 (498)
..+...+|++|++||. ||+||++.+.+ .+.+||+++.+....+....
T Consensus 54 ----~~~~~~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~~~~~~~ 102 (227)
T 3iog_A 54 ----KRVSRKPVLEVINTNYHTDRAGGNAYWKS---IGAKVVSTRQTRDLMKSDWA 102 (227)
T ss_dssp ----HTTCCSCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHHHHHH
T ss_pred ----HHhcCCCeEEEEeCCCchhhcChHHHHhh---CCCeEEECHHHHHHHHHhhH
Confidence 0124568999999999 99999999875 46899999999887655433
No 53
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=98.87 E-value=2.1e-09 Score=110.89 Aligned_cols=97 Identities=16% Similarity=0.042 Sum_probs=71.8
Q ss_pred cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+..+||+|++||. ||+|+++.+.+.. ...+||+++.+.+..+.. ..
T Consensus 72 ~~~~i~~ii~TH~H~DH~gg~~~l~~~~-p~~~v~~~~~~~~~~~~~----~~--------------------------- 119 (404)
T 2ohh_A 72 GMERVDYIIQNHVEKDHSGVLVELHRRF-PEAPIYCTEVAVKGLLKH----YP--------------------------- 119 (404)
T ss_dssp TCCCCCEEECSCCSHHHHTTHHHHHHHS-TTCCEEECHHHHHHHHHH----CG---------------------------
T ss_pred CccCCCEEEeCCCCCcccchHHHHHHHC-CCCEEEECHHHHHHHHHH----hc---------------------------
Confidence 3568999999998 9999999998732 268999999886643211 00
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec--CCCCccEEEEEEeCCeEEEEec
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a--GH~lGs~~~~I~~~~~~ivY~T 246 (498)
.+. . ..++.+..++.+++ ++.+++++.+ ||..|++++.+. ..+++| |
T Consensus 120 ~~~---------------~------------~~~~~~~~g~~~~~-g~~~i~~~~~p~gH~~~~~~~~~~--~~~~lf-~ 168 (404)
T 2ohh_A 120 SLR---------------E------------AEFMTVKTGDVLDL-GGKTLTFLETPLLHWPDSMFTLLD--EDGILF-S 168 (404)
T ss_dssp GGG---------------G------------SCEEECCTTCEEEC-SSCEEEEEECTTSSSTTCEEEEEE--TTTEEE-C
T ss_pred ccc---------------c------------CCceEcCCCCEEEE-CCEEEEEEeCCCCCCCCceEEEEC--CCcEEE-e
Confidence 000 0 13456778899999 7889998887 699999998874 457999 9
Q ss_pred CCCC
Q 010890 247 GSNF 250 (498)
Q Consensus 247 gD~~ 250 (498)
||..
T Consensus 169 GD~~ 172 (404)
T 2ohh_A 169 NDAF 172 (404)
T ss_dssp TTTT
T ss_pred cCcc
Confidence 9974
No 54
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=98.85 E-value=1.4e-09 Score=106.02 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=64.7
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
.|++|++||. ||+||++.|.+... ..+||+++... +
T Consensus 46 ~i~~IllTH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~----------------------------------------~- 83 (260)
T 1qh5_A 46 KLTTVLTTHHHWDHAGGNEKLVKLES-GLKVYGGDDRI----------------------------------------G- 83 (260)
T ss_dssp EEEEEECCCSSHHHHTTHHHHHHHST-TCEEEESCTTS----------------------------------------T-
T ss_pred CccEEEeCCCCccccCCHHHHHHHCC-CCEEEECcccC----------------------------------------C-
Confidence 5899999999 99999999987331 58999975210 0
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEE-Ee--CCeEEEEecC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII-SG--AKGNIAYISG 247 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I-~~--~~~~ivY~Tg 247 (498)
.....+..++.+++ ++++++.+.+ ||..|++++.+ +. .+.+++| ||
T Consensus 84 ----------------------------~~~~~~~~g~~~~~-g~~~~~vi~tPGHt~g~~~~~~~~~~~~~~~~lf-tG 133 (260)
T 1qh5_A 84 ----------------------------ALTHKITHLSTLQV-GSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVF-TG 133 (260)
T ss_dssp ----------------------------TCSEECCTTCEEEE-TTEEEEEEECCSSSTTCEEEEEECSSSSSCCEEE-EE
T ss_pred ----------------------------CCCEEeCCCCEEEE-CCEEEEEEECCCCCCCCEEEEEeccCCCCCCEEE-Ec
Confidence 01234566888898 7888888765 99999999998 44 4678999 99
Q ss_pred CCC
Q 010890 248 SNF 250 (498)
Q Consensus 248 D~~ 250 (498)
|+-
T Consensus 134 D~l 136 (260)
T 1qh5_A 134 DTL 136 (260)
T ss_dssp TTE
T ss_pred Ccc
Confidence 973
No 55
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=98.83 E-value=5.1e-09 Score=99.32 Aligned_cols=88 Identities=9% Similarity=-0.044 Sum_probs=61.9
Q ss_pred EEecCCCCCCCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccc
Q 010890 3 FTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYK 82 (498)
Q Consensus 3 i~~lGg~~~~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 82 (498)
+..+.++ ...+.+|++|+.++..||+|||....... .+.. ..
T Consensus 15 v~~i~~~-~~~~~n~~li~~~~~~iLiD~G~~~~~~~---------------------------------~~~~---~l- 56 (233)
T 3q6v_A 15 LYIVEDK-EYVQENSMVYIGTDGITIIGATWTPETAE---------------------------------TLYK---EI- 56 (233)
T ss_dssp EEEEEEC-SSSCEEEEEEECSSCEEEESCCSSHHHHH---------------------------------HHHH---HH-
T ss_pred EEEEeCC-CcCCCcEEEEEeCCeEEEEECCCCHHHHH---------------------------------HHHH---HH-
Confidence 3445444 34678999999999999999998742100 0000 00
Q ss_pred cccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHH
Q 010890 83 TVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 136 (498)
Q Consensus 83 ~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l 136 (498)
..+...+|++|++||. ||+||++.+.+ ...+||+++.+.++.....
T Consensus 57 -----~~~~~~~i~~ii~TH~H~DH~gg~~~~~~---~~~~v~~~~~~~~~~~~~~ 104 (233)
T 3q6v_A 57 -----RKVSPLPINEVINTNYHTDRAGGNAYWKT---LGAKIVATQMTYDLQKSQW 104 (233)
T ss_dssp -----HHHCCCCEEEEECSSSSHHHHTTHHHHHH---TTCEEEEEHHHHHHHHHHH
T ss_pred -----HHhcCCCcEEEEECCCChhhhChHHHHhh---CCCEEEEcHHHHHHHHhhh
Confidence 0113458999999999 99999999985 4689999999988765443
No 56
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=98.83 E-value=1.9e-09 Score=104.78 Aligned_cols=125 Identities=11% Similarity=0.098 Sum_probs=89.1
Q ss_pred CeEEecCCCCCCCCCCeEEEEE-CCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccc
Q 010890 1 MKFTCLCQGGGFNFPPCHILNV-SGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEP 79 (498)
Q Consensus 1 m~i~~lGg~~~~vg~sc~ll~~-~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 79 (498)
|+|+.++.. + +.+||+|+. ++..+|+|+|.. ..+. ..+ .
T Consensus 8 m~i~~i~~~-~--~n~~yli~~~~~~~vlID~G~~-~~i~--------------------------------~~l-~--- 47 (258)
T 2qed_A 8 MNLNSIPAF-Q--DNYIWVLTNDEGRCVIVDPGEA-APVL--------------------------------KAI-A--- 47 (258)
T ss_dssp CEEEEEEET-T--TEEEEEEECTTSEEEEECCSCH-HHHH--------------------------------HHH-H---
T ss_pred cEEEEeccc-C--ceEEEEEEECCCcEEEEeCCCc-HHHH--------------------------------HHH-H---
Confidence 788888755 2 456999998 678999999943 1000 001 0
Q ss_pred ccccccccccccCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 010890 80 WYKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSG 157 (498)
Q Consensus 80 ~~~~~~~~~~~~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~ 157 (498)
. . .. +|++|++||. ||+||++.|.+..+ ..+||+++.+. +
T Consensus 48 ~-------~--g~-~i~~Il~TH~H~DH~gg~~~l~~~~~-~~~v~~~~~~~------------~--------------- 89 (258)
T 2qed_A 48 E-------H--KW-MPEAIFLTHHHHDHVGGVKELLQHFP-QMTVYGPAETQ------------D--------------- 89 (258)
T ss_dssp H-------H--TC-EEEEEECCSCCHHHHTTHHHHHHHCT-TCEEEECGGGG------------G---------------
T ss_pred H-------c--CC-CCCEEEeCCCCccccCCHHHHHHHCC-CCEEEeccccc------------C---------------
Confidence 0 1 12 7999999999 99999999987332 48999986541 0
Q ss_pred cccchhhHHhhchhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEE
Q 010890 158 PQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIIS 236 (498)
Q Consensus 158 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~ 236 (498)
+ .....+.-++.+++ ++.+++++.+ ||..|++++.
T Consensus 90 ------------~-----------------------------~~~~~~~~g~~~~~-g~~~~~vi~tPGHt~g~~~~~-- 125 (258)
T 2qed_A 90 ------------K-----------------------------GATHLVGDGDTIRV-LGEKFTLFATPGHTLGHVCYF-- 125 (258)
T ss_dssp ------------G-----------------------------TCSEECCTTCEEEE-TTEEEEEEECCSSSTTCEEEE--
T ss_pred ------------C-----------------------------CCcEEeCCCCEEEE-CCcEEEEEECCCCCCCCeEEE--
Confidence 0 01234567888899 7888988876 9999999988
Q ss_pred eCCeEEEEecCCCC
Q 010890 237 GAKGNIAYISGSNF 250 (498)
Q Consensus 237 ~~~~~ivY~TgD~~ 250 (498)
+.+++| |||+.
T Consensus 126 --~~~~lf-tGD~l 136 (258)
T 2qed_A 126 --SRPYLF-CGDTL 136 (258)
T ss_dssp --ETTEEE-EETTE
T ss_pred --cCCEEE-ECCCC
Confidence 457899 99974
No 57
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=98.80 E-value=1.4e-09 Score=105.81 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=69.1
Q ss_pred cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+..+||+|++||. ||+||++.+.+.. -..+||+++.+.+..+..+
T Consensus 76 ~~~~i~~IilTH~H~DH~gg~~~l~~~~-~~~~v~~~~~~~~~l~~~~-------------------------------- 122 (262)
T 3hnn_A 76 NLKKLDYVILGHFSPNRIPTFKALLELA-PQITFVCSLPAAGDLRAAF-------------------------------- 122 (262)
T ss_dssp CGGGEEEEECSSCCGGGHHHHHHHHHHC-TTCEEEECHHHHHHHHHHS--------------------------------
T ss_pred ChhhCCEEEECCCCcchhchHHHHHHHC-CCCEEEECHHHHHHHHHHh--------------------------------
Confidence 4568999999999 9999999998732 2689999998866432110
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecC-CEEEEEEec-C-CCCccEEEEEEeCCeEEEEe
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG-ILIIKAFSS-G-LDIGACNWIISGAKGNIAYI 245 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~-~~~i~~~~a-G-H~lGs~~~~I~~~~~~ivY~ 245 (498)
+. . . ...+.++.++.+++ + +.+++++.+ | |..|+..+.+ .+.+++|
T Consensus 123 -------------~~-~-~------------~~~~~~~~g~~l~l-g~~~~~~~i~tpg~Ht~g~~~~~~--~~~~~lf- 171 (262)
T 3hnn_A 123 -------------PD-D-N------------LNILPMRGKETLDL-GKGHVLKFLPIPSPRWPAGLCTYD--VQTQILY- 171 (262)
T ss_dssp -------------SS-S-C------------CEEEECCSSCEEEC-STTCEEEEEECCCSSCTTCEEEEE--TTTTEEE-
T ss_pred -------------CC-C-C------------CceEEeCCCCEEEc-CCCcEEEEEECCCCCCCCeeEEEe--CCCCEEE-
Confidence 00 0 0 13567788999999 6 777776654 3 8999987765 4567999
Q ss_pred cCCC
Q 010890 246 SGSN 249 (498)
Q Consensus 246 TgD~ 249 (498)
|||.
T Consensus 172 sGD~ 175 (262)
T 3hnn_A 172 TDKI 175 (262)
T ss_dssp EETT
T ss_pred Eeec
Confidence 9998
No 58
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=98.79 E-value=5.5e-09 Score=108.20 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=72.6
Q ss_pred cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+..+||.|++||. ||+|+++.|.+..+-..+||+++.+..+.+...
T Consensus 86 ~~~~IdyIi~TH~h~DH~G~l~~l~~~~~~~~~v~~s~~~~~~l~~~~-------------------------------- 133 (410)
T 4dik_A 86 DPKEITHIIVNHTEPDASGSLPATLKTIGHDVEIIASNFGKRLLEGFY-------------------------------- 133 (410)
T ss_dssp CGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHHHHHH--------------------------------
T ss_pred CcccCCEEEeCcCCcchhhhHHHHHHHcCCCCEEEeCHHHHHHHHhhc--------------------------------
Confidence 5668999999999 999999999886666789999998876533210
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-C-CCCccEEEEEEeCCeEEEEec
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-G-LDIGACNWIISGAKGNIAYIS 246 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-G-H~lGs~~~~I~~~~~~ivY~T 246 (498)
+ . ..++.++-|+.+++ |+.+++++.+ | |..|+..+.. .+++| |
T Consensus 134 -------------~----~------------~~~~~v~dGd~l~l-G~~~L~~i~tPg~H~p~~~~~y~----~~iLF-s 178 (410)
T 4dik_A 134 -------------G----I------------KDVTVVKDGEEREI-GGKKFKFVMTPWLHWPDTMVTYL----DGILF-S 178 (410)
T ss_dssp -------------C----C------------CCEEECCTTCEEEE-TTEEEEEEECTTSSSTTCEEEEE----TTEEE-E
T ss_pred -------------C----c------------cceeEecCCCEEee-cceEEEEecCCCCCCCCCeeEEe----CCceE-c
Confidence 0 0 13567888999999 8999998876 4 8899887764 36899 9
Q ss_pred CCCC
Q 010890 247 GSNF 250 (498)
Q Consensus 247 gD~~ 250 (498)
||..
T Consensus 179 gD~f 182 (410)
T 4dik_A 179 CDVG 182 (410)
T ss_dssp ETTT
T ss_pred cccc
Confidence 9973
No 59
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=98.79 E-value=1.8e-09 Score=104.74 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=65.3
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+|++|++||. ||+||++.|.+.. ..+||+++.+... + +
T Consensus 46 ~i~~Il~TH~H~DH~gg~~~l~~~~--~~~v~~~~~~~~~------------------~-------------------~- 85 (254)
T 1xm8_A 46 NLTYILNTHHHYDHTGGNLELKDRY--GAKVIGSAMDKDR------------------I-------------------P- 85 (254)
T ss_dssp CCCEEECSSCCHHHHTTHHHHHHHH--CCEEEEEGGGGGG------------------S-------------------T-
T ss_pred CccEEEECCCCCcccccHHHHHHHc--CCeEEEchhhhhc------------------C-------------------C-
Confidence 6899999999 9999999998743 5899999754210 0 0
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEeCCeEEEEecCCCC
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGSNF 250 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~~~~ivY~TgD~~ 250 (498)
.....+.-++.+.+ ++.+++++.+ ||..|++++.++ +.+++| |||+-
T Consensus 86 ----------------------------~~~~~~~~g~~~~l-g~~~~~vi~tPGHt~g~~~~~~~--~~~~lf-tGD~l 133 (254)
T 1xm8_A 86 ----------------------------GIDMALKDGDKWMF-AGHEVHVMDTPGHTKGHISLYFP--GSRAIF-TGDTM 133 (254)
T ss_dssp ----------------------------TEEEEECTTCEEEE-TTEEEEEEECCSSSSSCEEEEEG--GGTEEE-EETTE
T ss_pred ----------------------------CCceeeCCCCEEEE-CCEEEEEEECCCCCCCcEEEEEC--CCCEEE-EcCcc
Confidence 01234667888999 7888888864 999999999985 457999 99973
No 60
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=98.79 E-value=4.4e-10 Score=110.81 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=88.7
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
+.+||+|+.++..||+|||..... ... ..+.. .. .....
T Consensus 31 ~~n~~li~~~~~~ilID~G~~~~~--------~~~-----------------------~~l~~---~l-------~~~~~ 69 (289)
T 4ad9_A 31 GTNTYLVGTGPRRILIDTGEPAIP--------EYI-----------------------SCLKQ---AL-------TEFNT 69 (289)
T ss_dssp CCEEEEECSSSSEEEECCCSTTCH--------HHH-----------------------HHHHH---HH-------HHTTC
T ss_pred ceEEEEEecCCceEEEeCCCCCCh--------HHH-----------------------HHHHH---HH-------HHcCC
Confidence 689999999899999999975321 000 00000 00 00122
Q ss_pred cccEEEecCC--CCCCccchhccccC--CceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhc
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEG--FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g--~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (498)
+|++||+||. ||+||++.|.+... ...+||+...+... ..+.
T Consensus 70 ~i~~Ii~TH~H~DH~gg~~~l~~~~~~~~~~~v~~~~~~~~~--------------------------~~~~-------- 115 (289)
T 4ad9_A 70 AIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQR--------------------------EEII-------- 115 (289)
T ss_dssp CEEEEECSCSSHHHHTTHHHHHHHSCCSSCCCEEECCCSSCC--------------------------CCCB--------
T ss_pred CceEEEEcCCCCcccccHHHHHHhhccCCCceEEecCCCcch--------------------------hhhc--------
Confidence 7999999999 99999999998432 25688876432100 0000
Q ss_pred hhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEeCCeEEEEecCC
Q 010890 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGS 248 (498)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~~~~ivY~TgD 248 (498)
. .. + ..++.+..++.+++ ++.+++++.+ ||..|++++.+. +.+++| |||
T Consensus 116 ------------~----~~-~---------~~~~~~~~g~~~~~-gg~~~~~~~~pGHt~~~~~~~~~--~~~~lf-tGD 165 (289)
T 4ad9_A 116 ------------G----NG-E---------QQYVYLKDGDVIKT-EGATLRVLYTPGHTDDHMALLLE--EENAIF-SGD 165 (289)
T ss_dssp ------------T----TT-T---------BCEEECCTTCEEEE-TTEEEEEEECCSSSTTCEEEEET--TTTEEE-EET
T ss_pred ------------c----CC-C---------CceEEcCCCCEEEe-CCeEEEEEECCCCCCCCEEEEEc--CCCEEE-Eec
Confidence 0 00 0 24567888999999 7999999987 999999999984 456999 999
Q ss_pred CC
Q 010890 249 NF 250 (498)
Q Consensus 249 ~~ 250 (498)
.-
T Consensus 166 ~~ 167 (289)
T 4ad9_A 166 CI 167 (289)
T ss_dssp SS
T ss_pred cc
Confidence 73
No 61
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=98.78 E-value=4.5e-09 Score=108.16 Aligned_cols=96 Identities=9% Similarity=0.071 Sum_probs=71.4
Q ss_pred cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+..+||+|++||. ||+||++.|.+.. -..+||+++.+.+..+. . +
T Consensus 69 ~~~~i~~iiiTH~H~DH~gg~~~l~~~~-~~~~v~~~~~~~~~l~~----~----------~------------------ 115 (398)
T 1ycg_A 69 DPVKLDYLVVNHTESDHAGAFPAIMELC-PDAHVLCTQRAFDSLKA----H----------Y------------------ 115 (398)
T ss_dssp SSCCCSEEEESCCSHHHHTTHHHHHHHC-TTCEEEECHHHHHHHHH----H----------T------------------
T ss_pred CcccCCEEEeCCCCcchhhhHHHHHHHC-CCCEEEEcHHHHHHHHH----H----------h------------------
Confidence 4668999999999 9999999998732 26899999988654321 1 0
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec--CCCCccEEEEEEeCCeEEEEec
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a--GH~lGs~~~~I~~~~~~ivY~T 246 (498)
+. . . ..++.+..++.+++ ++.+++++.+ ||..|++++.+ .+.+++| |
T Consensus 116 -------------~~-~-~------------~~~~~~~~g~~~~~-g~~~~~~~~~p~gH~~~~~~~~~--~~~~~lf-~ 164 (398)
T 1ycg_A 116 -------------SH-I-D------------FNYTIVKTGTSVSL-GKRSLTFIEAPMLHWPDSMFTYV--PEEALLL-P 164 (398)
T ss_dssp -------------CS-C-C------------CEEEECCTTCEEEC-SSCEEEEEECTTSSSTTCEEEEE--TTTTEEE-E
T ss_pred -------------CC-C-C------------cceEEeCCCCEEee-CCcEEEEEeCCCCCCCCcEEEEE--CCCcEEE-e
Confidence 00 0 0 13456778899999 7888888864 79999988765 5678999 9
Q ss_pred CCCC
Q 010890 247 GSNF 250 (498)
Q Consensus 247 gD~~ 250 (498)
||..
T Consensus 165 GD~~ 168 (398)
T 1ycg_A 165 NDAF 168 (398)
T ss_dssp ETTT
T ss_pred cccc
Confidence 9983
No 62
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=98.77 E-value=7.8e-09 Score=109.07 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=69.9
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchh
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPS 171 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 171 (498)
+|++||+||. ||++|++.|.+.. ..+||+++.+... |.
T Consensus 72 ~i~~Il~TH~H~DH~gg~~~l~~~~--~a~v~~~~~~~~~----------------------------~~---------- 111 (466)
T 3r2u_A 72 TITHAAETHIHADFASGIRDVAIKL--NANIYVSGESDDT----------------------------LG---------- 111 (466)
T ss_dssp EEEEEECSSCCSSSCCCHHHHHHHH--CCEEEEECCSCTT----------------------------TS----------
T ss_pred eeeEEEECCCChhhhccHHHHHHhh--CCeEEECcchhhh----------------------------hc----------
Confidence 6999999999 9999999998843 6899999753110 00
Q ss_pred hHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec-CCCCccEEEEEEeC-----CeEEEEe
Q 010890 172 ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGA-----KGNIAYI 245 (498)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a-GH~lGs~~~~I~~~-----~~~ivY~ 245 (498)
. .+.+ .....+..++.+++ ++++|+++.+ ||+.|++.+.+... +.+++|
T Consensus 112 ----------~----~~~~---------~~~~~~~~g~~l~~-g~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~~~~lf- 166 (466)
T 3r2u_A 112 ----------Y----KNMP---------NHTHFVQHNDDIYV-GNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLF- 166 (466)
T ss_dssp ----------C----CSCC---------TTCEEECTTCEEEE-TTEEEEEEECCSSSTTCEEEEEECGGGTCCSCCEEE-
T ss_pred ----------c----ccCC---------CCCEEeCCCCEEEE-CCEEEEEEECCCCCCCCEEEEEcCCCccCCCceEEE-
Confidence 0 0000 13567888999999 8999999875 89999999999863 346999
Q ss_pred cCCCCC
Q 010890 246 SGSNFA 251 (498)
Q Consensus 246 TgD~~~ 251 (498)
|||+-.
T Consensus 167 tGD~lf 172 (466)
T 3r2u_A 167 SGDFIF 172 (466)
T ss_dssp EETTBC
T ss_pred ECCccc
Confidence 999843
No 63
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=98.74 E-value=2.3e-09 Score=100.01 Aligned_cols=119 Identities=10% Similarity=-0.082 Sum_probs=82.7
Q ss_pred CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccC
Q 010890 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (498)
Q Consensus 13 vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 92 (498)
.+.+||+|+.++..+|+|+|.....+. ..| + ..
T Consensus 22 ~~~n~~li~~~~~~iliD~g~~~~~~~--------------------------------~~l-------~--------~~ 54 (201)
T 2p97_A 22 IDFNGFAWIRPEGNILIDPVALSNHDW--------------------------------KHL-------E--------SL 54 (201)
T ss_dssp EEEEEEEECCTTCCEEESCCCCCHHHH--------------------------------HHH-------H--------HT
T ss_pred cceeEEEEEeCCeeEEEECCCCcHHHH--------------------------------HHH-------H--------hc
Confidence 468999999988999999995322100 001 0 12
Q ss_pred CcccEEEecCCCCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhchhh
Q 010890 93 SFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172 (498)
Q Consensus 93 ~~ID~IlISH~DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 172 (498)
.+|++|++||.||+|+++.+.+.. ..+||+++.+.+..+
T Consensus 55 g~i~~ii~TH~DH~gg~~~~~~~~--~a~v~~~~~~~~~~~--------------------------------------- 93 (201)
T 2p97_A 55 GGVVWIVLTNSDHVRSAKEIADQT--YTKIAGPVAEKENFP--------------------------------------- 93 (201)
T ss_dssp TCCSEEECSSGGGCTTHHHHHHHS--CCEEEEEGGGTTSCS---------------------------------------
T ss_pred CCCCEEEECCchhhhhHHHHHHhc--CCEEEEcHhHhhhhc---------------------------------------
Confidence 289999999999999999998743 489999986532100
Q ss_pred HhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCC
Q 010890 173 LRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA 251 (498)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~~ 251 (498)
. + ....+.-++.+. .++++...++||..|++++.++ + +++| |||...
T Consensus 94 ---------~-------~----------~~~~~~~g~~~~--~~~~~~~~p~gHt~g~~~~~~~--~-~~lf-~GD~~~ 140 (201)
T 2p97_A 94 ---------I-------Y----------CDRWLSDGDELV--PGLKVMELQGSKTPGELALLLE--E-TTLI-TGDLVR 140 (201)
T ss_dssp ---------S-------C----------CSEEECTTCBSS--TTEEEEEECSSSSTTEEEEEET--T-TEEE-ECSSEE
T ss_pred ---------c-------c----------CceecCCCCEEc--ceEEEEECCCCCCCCcEEEEEc--C-CEEE-ECcccc
Confidence 0 0 012344455432 3688888888999999999886 3 8999 999743
No 64
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=98.67 E-value=2.6e-08 Score=103.17 Aligned_cols=96 Identities=13% Similarity=-0.040 Sum_probs=69.2
Q ss_pred cCCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhh
Q 010890 91 NVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168 (498)
Q Consensus 91 ~~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 168 (498)
+..+||+|++||. ||+|+++.|.+.. ...+||+++.+.+.... .. +
T Consensus 74 ~~~~i~~ii~TH~H~DH~gg~~~l~~~~-~~~~v~~~~~~~~~~~~----~~----------~----------------- 121 (414)
T 2q9u_A 74 PLDKIKYVVMNHAEGDHASSLKDHYHKF-TNATFVCTKKCQEHLKI----LY----------G----------------- 121 (414)
T ss_dssp CGGGCCEEECSCCSGGGTTTHHHHGGGS-TTCEEEECHHHHHHHHH----HH----------C-----------------
T ss_pred CcccCCEEEeCCCCcchhcCHHHHHHHC-CCCEEEECHHHHHHHHH----Hh----------C-----------------
Confidence 4568999999999 9999999998732 26899999988664221 10 0
Q ss_pred chhhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEec--CCCCccEEEEEEeCCeEEEEec
Q 010890 169 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYIS 246 (498)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~a--GH~lGs~~~~I~~~~~~ivY~T 246 (498)
. . . ..+..+..++.+++ ++.+++++.+ ||..|++.+.+ .+.+++| |
T Consensus 122 -------------~--~-~------------~~~~~~~~g~~~~l-g~~~~~~~~~p~gHt~~~~~~~~--~~~~~lf-~ 169 (414)
T 2q9u_A 122 -------------M--E-K------------ATWLIVDDKYTLKI-GKRTLKFIPVPLLHWPDSTFTYC--PEDKILF-S 169 (414)
T ss_dssp -------------C--T-T------------CCEEECCTTCCEEC-SSCEEEEEECTTSSSTTCEEEEE--TTTTEEE-E
T ss_pred -------------C--C-C------------CeeEEeCCCCEEEE-CCeEEEEEeCCCCCCCCceEEEE--CCCeEEE-E
Confidence 0 0 0 12456677888999 7877777755 69999987654 4568999 9
Q ss_pred CCCC
Q 010890 247 GSNF 250 (498)
Q Consensus 247 gD~~ 250 (498)
||..
T Consensus 170 GD~~ 173 (414)
T 2q9u_A 170 NDGF 173 (414)
T ss_dssp ETTT
T ss_pred cccc
Confidence 9963
No 65
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=98.67 E-value=1.3e-08 Score=99.17 Aligned_cols=133 Identities=8% Similarity=-0.025 Sum_probs=86.4
Q ss_pred CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccC
Q 010890 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (498)
Q Consensus 13 vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 92 (498)
.+.+||+|+.++..||+|+|...... . .+.. ... . ...
T Consensus 66 ~~~n~~li~~~~~~iLID~G~~~~~~--------~-------------------------~l~~---~l~---~---~~g 103 (265)
T 2y8b_A 66 YSSNGLIVRDADELLLIDTAWGAKNT--------V-------------------------ALLA---EIE---K---QIG 103 (265)
T ss_dssp EEEEEEEEEETTEEEEESCCSSHHHH--------H-------------------------HHHH---HHH---H---HTC
T ss_pred ccceEEEEEECCeEEEEeCCCCHHHH--------H-------------------------HHHH---HHH---H---hcC
Confidence 35799999999999999999863210 0 0000 000 0 001
Q ss_pred CcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcccchhhHHhhch
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLP 170 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 170 (498)
.+|++|++||. ||+||++.+.+ . +.+||+++.+.+..+. . |.
T Consensus 104 ~~i~~VilTH~H~DH~gg~~~~~~-~--~a~v~~~~~~~~~~~~----~--------------------~~--------- 147 (265)
T 2y8b_A 104 LPVTRSISTHFHDDRVGGVDVLRA-A--GVATYTSPLTRQLAEA----A--------------------GN--------- 147 (265)
T ss_dssp SCEEEEECSSSSHHHHTTHHHHHH-T--TCEEEECHHHHHHHHH----T--------------------TC---------
T ss_pred CCeEEEEeCCCChhhcCCHHHHhh-C--CCeEEECHHHHHHHHh----c--------------------cc---------
Confidence 27999999999 99999998877 2 6899999988664221 0 00
Q ss_pred hhHhhhhccCCCCCCCCCCchHHHHHHHHhhceeecCCCeEEecCCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCC
Q 010890 171 SALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 250 (498)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~dv~~~~~~i~~v~y~e~~~l~~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~ 250 (498)
. ... .++ .. ..+.++.+.+ +++++.....||..|++++.++ +.+++| |||.-
T Consensus 148 -----------~--~~~-~~~--------~~--~~~~~~~~~~-g~~~v~~~~pGHt~g~~~~~~~--~~~~lf-~GD~~ 199 (265)
T 2y8b_A 148 -----------E--VPA-HSL--------KA--LSSSGDVVRF-GPVEVFYPGAAHSGDNLVVYVP--AVRVLF-GGCAV 199 (265)
T ss_dssp -----------C--CCS-EEC--------SS--CSSTTEEEEE-TTEEEEECCSSSSTTCCEEEET--TTTEEE-EETTS
T ss_pred -----------c--ccc-ccc--------cc--cCCCCcEEee-cCEEEEecCCCCCCCCEEEEec--CCCEEE-Ecccc
Confidence 0 000 000 00 0134556666 6888876778999999999874 467999 99974
Q ss_pred C
Q 010890 251 A 251 (498)
Q Consensus 251 ~ 251 (498)
.
T Consensus 200 ~ 200 (265)
T 2y8b_A 200 H 200 (265)
T ss_dssp C
T ss_pred c
Confidence 3
No 66
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=98.60 E-value=1.3e-08 Score=96.57 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=52.6
Q ss_pred CCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccC
Q 010890 13 NFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNV 92 (498)
Q Consensus 13 vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 92 (498)
.+.+||+|+.++..||+|+|....... .+.. ..+ .. -
T Consensus 31 ~~~n~~li~~~~~~iliD~g~~~~~~~---------------------------------~~~~---~l~------~~-g 67 (228)
T 1jjt_A 31 VPKHGLVVLVNAEAYLIDTPFTAKDTE---------------------------------KLVT---WFV------ER-G 67 (228)
T ss_dssp EEEEEEEEEETTEEEEESCCSSHHHHH---------------------------------HHHH---HHH------TT-T
T ss_pred ccceEEEEEECCcEEEEeCCCChhhHH---------------------------------HHHH---HHH------Hc-C
Confidence 457999999999999999998632100 0000 000 01 1
Q ss_pred CcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHH
Q 010890 93 SFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARI 131 (498)
Q Consensus 93 ~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l 131 (498)
.+|++|++||. ||+|+++.+.+ +..+||+++.+.++
T Consensus 68 ~~i~~ii~TH~H~DH~gg~~~l~~---~~~~v~~~~~~~~~ 105 (228)
T 1jjt_A 68 YKIKGSISSHFHSDSTGGIEWLNS---RSIPTYASELTNEL 105 (228)
T ss_dssp CEEEEEECSSSSHHHHTTHHHHHH---TTCCEEEEHHHHHH
T ss_pred CCeeEEEeCCCChhhhccHHHHHh---CCCEEEEChHHHHH
Confidence 27999999999 99999999887 36899999988664
No 67
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=98.25 E-value=2.3e-07 Score=90.56 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=53.6
Q ss_pred CCCCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCccccccccccccccccccccc
Q 010890 12 FNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWN 91 (498)
Q Consensus 12 ~vg~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~ 91 (498)
.++.|||+|..++..+|+|+|....... .+.+ +.. ...
T Consensus 72 ~~~~N~ylv~~~~~~ilIDtg~~~~~~~---------------------------------~l~~---~i~------~~~ 109 (270)
T 4eyb_A 72 AVASNGLIVRDGGRVLVVDTAWTDDQTA---------------------------------QILN---WIK------QEI 109 (270)
T ss_dssp EEEEEEEEEEETTEEEEESCCSSHHHHH---------------------------------HHHH---HHH------HHT
T ss_pred ccceEEEEEEECCEEEEEeCCCCHHHHH---------------------------------HHHH---HHH------Hhc
Confidence 4557899999999999999998743200 0100 000 001
Q ss_pred CCcccEEEecCC--CCCCccchhccccCCceeEEEehHHHHH
Q 010890 92 VSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARI 131 (498)
Q Consensus 92 ~~~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~~l 131 (498)
-..|++|++||. ||+||+..|.+ . ..|||+++.+.++
T Consensus 110 ~~~I~~Ii~TH~H~DH~gg~~~l~~-~--~~~v~~~~~~~~~ 148 (270)
T 4eyb_A 110 NLPVALAVVTHAHQDKMGGMDALHA-A--GIATYANALSNQL 148 (270)
T ss_dssp CCCEEEEEECSSSHHHHTTHHHHHH-T--TCEEEEEHHHHHH
T ss_pred CCceEEEEeCCCChhhcCcHHHHHH-C--CCeEEECHHHHHH
Confidence 236899999999 99999999987 2 6899999987654
No 68
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis}
Probab=98.19 E-value=9.9e-07 Score=86.70 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
.++|++|+.++.+||+|||.....+ ..+ ....+++.
T Consensus 32 ~g~s~li~~~~~~iLiD~G~~~~~~---------------------------------~~l-----------~~~g~~~~ 67 (284)
T 2p4z_A 32 HGLSLLLKKGNKEIVVDTGQSENFI---------------------------------KNC-----------GLMGIDVG 67 (284)
T ss_dssp SSCEEEEEETTEEEEECCCSSTHHH---------------------------------HHH-----------HHTTCCGG
T ss_pred CEEEEEEEECCeEEEEeCCCCHHHH---------------------------------HHH-----------HHcCCChh
Confidence 5789999999999999999863210 001 00223566
Q ss_pred cccEEEecCC--CCCCccchhccccCCceeEEEehHHH
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAA 129 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT~ 129 (498)
+||+|++||. ||++|++.+.+.. .+.+||+++.+.
T Consensus 68 ~i~~v~lTH~H~DH~ggl~~~~~~~-~~~~v~~~~~~~ 104 (284)
T 2p4z_A 68 RIKKVVLTHGHYDHIGGLKGLLERN-PEVKIYTHKEIL 104 (284)
T ss_dssp GCCEEECCCSCHHHHTTHHHHHHHC-TTCEEEEEGGGG
T ss_pred hCCEEEECCCCchhhccHHHHHHHc-CCCceecCHHHH
Confidence 8999999999 9999999987622 268999998763
No 69
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=97.98 E-value=1.2e-05 Score=88.02 Aligned_cols=78 Identities=9% Similarity=-0.034 Sum_probs=54.2
Q ss_pred CCCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCC
Q 010890 14 FPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVS 93 (498)
Q Consensus 14 g~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 93 (498)
..+||+|+.++..||+|+|....... . .+ . .+. ......
T Consensus 122 ~~N~ylI~~~~g~iLIDtG~~~~~a~-------~-------------------------~l-~---~i~-----~~~~~~ 160 (658)
T 2cfu_A 122 LANITFIRGDSGWIVVDTLTTPATAR-------A-------------------------AY-E---LVS-----RELGER 160 (658)
T ss_dssp SSCEEEEECSSSEEEECCCSSHHHHH-------H-------------------------HH-H---HHH-----HHHCCC
T ss_pred CeEEEEEEECCEEEEEECCCCHHHHH-------H-------------------------HH-H---HHH-----hhCCCC
Confidence 47999999888999999998743100 0 00 0 000 001345
Q ss_pred cccEEEecCC--CCCCccchhccc---cCCceeEEEehHHHHHH
Q 010890 94 FIDVVLISSP--MGMLGLPFLTRM---EGFSAKIYITEAAARIG 132 (498)
Q Consensus 94 ~ID~IlISH~--DH~g~LP~L~~~---~g~~~~Iy~T~pT~~l~ 132 (498)
.|++|++||. ||+||++.+.+. ...+.+||+++.+.+..
T Consensus 161 ~I~~IIlTH~H~DH~GG~~~l~~~~~~~~~~a~V~a~~~~~~~~ 204 (658)
T 2cfu_A 161 PIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAA 204 (658)
T ss_dssp CEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTHHHHH
T ss_pred CceEEEECCCChhhhCCHHHHHhhhhccCCCCEEEEchhHHHHH
Confidence 8999999999 999999998752 02368999999986643
No 70
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=96.87 E-value=5.3e-06 Score=90.76 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=51.8
Q ss_pred CCeEEEEECCEEEEEeCCCCCccccccCCCCcccccccccCCccchhhccccCCCCcccccccccccccccccccccCCc
Q 010890 15 PPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSF 94 (498)
Q Consensus 15 ~sc~ll~~~~~~ILlDcG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~ 94 (498)
.+|++|+.++..||+|+|....... . .+ . ... ..+....
T Consensus 133 ~N~~lI~~~~~~iLIDtG~~~~~a~------~--------------------------~l-~---~i~-----~~~~~~~ 171 (668)
T 2yhe_A 133 ANMTIIEGDSGLVLIDTLTTAETAR------A--------------------------AL-D---LYF-----QHRPKKP 171 (668)
Confidence 6899999888999999998743100 0 00 0 000 0012457
Q ss_pred ccEEEecCC--CCCCccchhccc---cCCceeEEEehHHHH
Q 010890 95 IDVVLISSP--MGMLGLPFLTRM---EGFSAKIYITEAAAR 130 (498)
Q Consensus 95 ID~IlISH~--DH~g~LP~L~~~---~g~~~~Iy~T~pT~~ 130 (498)
|++|++||. ||+||++.+.+. .....+||+++.+.+
T Consensus 172 I~~IilTH~H~DH~gG~~~l~~~~~~~~~~a~I~a~~~~~e 212 (668)
T 2yhe_A 172 IVAVVYSHSHIDHFGGARGIIDEADVKAGKVKVFAPSGFME 212 (668)
Confidence 999999999 999999999862 124689999998743
No 71
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=97.26 E-value=0.00012 Score=71.14 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.2
Q ss_pred cEEEecCC--CCCCccchhccccCCceeEEEehHH
Q 010890 96 DVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAA 128 (498)
Q Consensus 96 D~IlISH~--DH~g~LP~L~~~~g~~~~Iy~T~pT 128 (498)
|+|+|||. ||+||++.+ .+.+||+++..
T Consensus 63 ~~IvlTH~H~DH~ggl~~l-----~~~~v~~~~~~ 92 (267)
T 3h3e_A 63 KDVLISHGHYDHAGGLLYL-----SGKRVWLRKEA 92 (267)
T ss_dssp SEEECSCSCHHHHGGGGGC-----CSCEEEEEGGG
T ss_pred CEEEECCCChhhhCCHHHh-----cCCEEEECHHH
Confidence 99999999 999999998 36899999855
No 72
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=31.93 E-value=2.1e+02 Score=27.11 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcC-CeEEEecCC--hHHHHHHHHHHHHHHHhCC--------CceeEEEEcccHHHHHHHHHHHHH
Q 010890 318 ICSCAIDSVKAG-GSVLIPINR--VGVFLQLLEQIAIFMECSS--------LKIPIYIISSVAEELLAYTNTIPE 381 (498)
Q Consensus 318 ~~~~I~~tl~~g-G~VLIPv~~--~Gr~~Ell~~L~~~~~~~~--------l~~pIy~~s~~a~~~~~~~~~~~e 381 (498)
+++.+.+.|+.| |+.++=+|. .+-..+++..|...+.... -..-+|+++....++.........
T Consensus 165 LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~S~E~Y~V~~~r~n~~~~v~~~s~ 239 (277)
T 3evf_A 165 VLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGTVIRNPLSRNSTHEMYYVSGARSNVTFTVNQTSR 239 (277)
T ss_dssp HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEESSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCEEEEeCCCCCCCCceEEEEecCCCccchHHHHHH
Confidence 467788899999 999999999 7779999999988887632 135688887765566555554433
No 73
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=27.19 E-value=82 Score=31.90 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=38.0
Q ss_pred CCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCCCCC-----CCC-CcccCCCCCCEEEEc
Q 010890 215 GILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGH-----AMD-FDYRAIQGSDLILYS 272 (498)
Q Consensus 215 ~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~~~~~-----~~~-~~~~~~~~~D~LI~~ 272 (498)
+.++|+++.+|..+|..++.|+.++++|++ |.|.... ..+ .+...+..+|.+++|
T Consensus 10 ~~m~i~~LG~~~~vg~s~~li~~~~~~iLI---D~G~~~~~~~~~~~~~l~~~~~~~Id~VllT 70 (459)
T 2i7t_A 10 DQLLIRPLGAGQEVGRSCIILEFKGRKIML---DCGIHPGLEGMDALPYIDLIDPAEIDLLLIS 70 (459)
T ss_dssp EEEEEEEEESSSSSSSCEEEEEETTEEEEE---CCCCCTTSCGGGGSCCGGGSCGGGCCEEECC
T ss_pred CeEEEEEEecCCCCCCCEEEEEECCeEEEE---eCCCCcCcccccccCcccccCcccCcEEEEC
Confidence 358899999999999999999999999998 6654211 011 111123467888884
No 74
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=26.79 E-value=36 Score=30.11 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHH
Q 010890 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIF 352 (498)
Q Consensus 317 ~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~ 352 (498)
..++.+.+.|+.||..++-++..+...+++..|...
T Consensus 120 ~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~ 155 (191)
T 3dou_A 120 RVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN 155 (191)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG
T ss_pred HHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh
Confidence 445667788999999999999888877887777443
No 75
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=25.68 E-value=57 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHH
Q 010890 316 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353 (498)
Q Consensus 316 ~~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~ 353 (498)
..+++.+.+.|+.||.+++-.+......+++..+...|
T Consensus 116 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~ 153 (180)
T 1ej0_A 116 ELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLF 153 (180)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHE
T ss_pred HHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhh
Confidence 34567788889999999997777766777777775554
No 76
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=22.78 E-value=73 Score=27.42 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCeEEEecCChHHHHHHHHHHHHHH
Q 010890 317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 353 (498)
Q Consensus 317 ~~~~~I~~tl~~gG~VLIPv~~~Gr~~Ell~~L~~~~ 353 (498)
.+++.+.+.|+.||.+++-++......+++..+...+
T Consensus 126 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f 162 (196)
T 2nyu_A 126 TLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEF 162 (196)
T ss_dssp HHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHE
T ss_pred HHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHh
Confidence 4566788889999999998877766777777665443
No 77
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=21.15 E-value=1.4e+02 Score=31.92 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=38.4
Q ss_pred CCEEEEEEecCCCCccEEEEEEeCCeEEEEecCCCCCCCC---CCCCcc----c-CCCCCCEEEEc
Q 010890 215 GILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGH---AMDFDY----R-AIQGSDLILYS 272 (498)
Q Consensus 215 ~~~~i~~~~aGH~lGs~~~~I~~~~~~ivY~TgD~~~~~~---~~~~~~----~-~~~~~D~LI~~ 272 (498)
+.++|+++.+|...|..++.|+.++.+|++ |.|.... ...... . ....+|.+++|
T Consensus 182 ~~m~I~~LG~~~evg~s~~LI~~~~~~ILI---D~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllT 244 (640)
T 2xr1_A 182 QWVRVTALGGCKEVGRSCFLLSTPESRILI---DCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVT 244 (640)
T ss_dssp CCCEEEEEECSSSSBCCEEEEECSSCEEEE---CCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECC
T ss_pred CceEEEEEecCCCCCCcEEEEEECCeEEEE---eCCCCccccccccccccccccCCcccCcEEEEC
Confidence 468999999999999999999999888888 6554311 111111 1 23467888884
No 78
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=20.05 E-value=2.9e+02 Score=26.17 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcC--CeEEEecCC--hHHHHHHHHHHHHHHHhCCC--------ceeEEEEcccHHHHHHHHH
Q 010890 318 ICSCAIDSVKAG--GSVLIPINR--VGVFLQLLEQIAIFMECSSL--------KIPIYIISSVAEELLAYTN 377 (498)
Q Consensus 318 ~~~~I~~tl~~g--G~VLIPv~~--~Gr~~Ell~~L~~~~~~~~l--------~~pIy~~s~~a~~~~~~~~ 377 (498)
+++.+.++|+.| |+-++=+|. .+-..+++..|...+..... ..-+|+++....++.....
T Consensus 181 LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V~~~KPaSR~~S~E~Y~V~~~r~n~~~~v~ 252 (282)
T 3gcz_A 181 VLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGGLVRVPLSRNSTHEMYWVSGTRTDVVGTVS 252 (282)
T ss_dssp HHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCEEECCTTSCTTCCCEEEETTCCCCSHHHHH
T ss_pred HHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCEEEEcCCCcccCcceeEEEecCCCccchHH
Confidence 466778889999 999999999 77799999999888876321 3457777664434444443
Done!