Query 010892
Match_columns 498
No_of_seqs 215 out of 670
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 3.8E-68 8.2E-73 569.1 40.0 383 96-483 147-574 (577)
2 PF04515 Choline_transpo: Plas 100.0 1.1E-60 2.3E-65 491.0 30.8 303 153-457 2-334 (334)
3 PF06570 DUF1129: Protein of u 75.7 18 0.00038 34.7 9.0 23 154-176 180-202 (206)
4 PF10110 GPDPase_memb: Membran 56.1 1.1E+02 0.0024 27.5 9.8 31 345-375 105-135 (149)
5 PF01690 PLRV_ORF5: Potato lea 48.5 14 0.0003 39.7 2.7 23 3-25 3-25 (465)
6 COG4536 CorB Putative Mg2+ and 37.1 4.6E+02 0.01 27.9 11.5 39 330-371 17-55 (423)
7 PRK15410 DgsA anti-repressor M 36.0 18 0.00038 36.3 1.2 26 445-470 219-244 (260)
8 PRK09752 adhesin; Provisional 34.9 36 0.00078 40.8 3.6 9 257-265 1063-1071(1250)
9 PHA02844 putative transmembran 34.2 54 0.0012 26.3 3.4 25 96-120 49-73 (75)
10 PF11190 DUF2976: Protein of u 32.6 75 0.0016 26.4 4.2 38 21-59 2-39 (87)
11 KOG2322 N-methyl-D-aspartate r 32.1 5.1E+02 0.011 25.6 15.3 13 1-13 1-13 (237)
12 KOG2611 Neurochondrin/leucine- 31.5 65 0.0014 35.1 4.5 43 433-478 77-119 (698)
13 PF06167 Peptidase_M90: Glucos 28.3 33 0.00072 34.2 1.7 24 445-468 229-252 (253)
14 TIGR02220 phg_TIGR02220 phage 27.2 50 0.0011 26.8 2.2 30 336-372 2-31 (77)
15 cd03036 ArsC_like Arsenate Red 24.3 41 0.00089 28.8 1.3 25 351-375 2-26 (111)
16 PF01690 PLRV_ORF5: Potato lea 24.2 65 0.0014 34.8 3.0 24 8-31 4-27 (465)
17 COG3872 Predicted metal-depend 23.8 7.1E+02 0.015 25.1 9.8 44 26-71 30-77 (318)
18 PF13829 DUF4191: Domain of un 21.4 3.3E+02 0.0071 26.7 6.9 12 146-157 47-58 (224)
19 cd03027 GRX_DEP Glutaredoxin ( 20.1 58 0.0013 25.2 1.3 25 351-375 4-28 (73)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-68 Score=569.09 Aligned_cols=383 Identities=30% Similarity=0.466 Sum_probs=326.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-------h-----------------h-
Q 010892 96 DYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWC-------D-----------------Q- 150 (498)
Q Consensus 96 ~~~~ll~~~~~va~vls~~~l~llr~~~~~li~~~~~~~~~~~~~~~~~~~~~-------~-----------------~- 150 (498)
.+|+.+...++++.+++.+++.++|.+++.++|..+.++.+.+....-.+++. + .
T Consensus 147 ~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~ 226 (577)
T KOG1362|consen 147 RSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTL 226 (577)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHH
Confidence 67888888999999999999999999999999988654433333333222221 0 0
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccccccc-----
Q 010892 151 -FFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD----- 224 (498)
Q Consensus 151 -~~~gIv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~~~~~il~~~~~~~w~~~~~g~~~~~----- 224 (498)
...||+++++.++.+++.+.+|+||+++++++|+++|++.+.|++.+.|+.+.++..+|.++|+.+..+....+
T Consensus 227 l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~g 306 (577)
T KOG1362|consen 227 LDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEG 306 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 13689999999999999999999999999999999999999999999999999999999999998765544443
Q ss_pred -----cCCCchhHHHHHHHHH-HHHHHHHHhhccccceeceEEEEeeccCCCCCCCCCchHHHHHHHHHhhcchhhhhhH
Q 010892 225 -----MDDGGRWWLLLVLSVS-LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGS 298 (498)
Q Consensus 225 -----~~~~~~~~l~~~~~f~-~~Wt~~vi~~v~~~tvAg~v~~WYF~~~~~~~~~p~~~v~~s~~ra~t~sfGSIcfGS 298 (498)
.++++...+..++++. ++|++||++|++|+++||++++|||++++ +++|..|+..|++|+++||+||+|+||
T Consensus 307 g~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GS 384 (577)
T KOG1362|consen 307 GCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGS 384 (577)
T ss_pred CceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhh
Confidence 1222222223333333 99999999999999999999999999986 689999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhccCC--c---hhhHHHHHHHHHHHHHHHHHhchhHHHHHHhcCCchhHhHHHHHHHHHhccc
Q 010892 299 LFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGV 373 (498)
Q Consensus 299 LIvaii~~lR~ll~~l~~~~~~--~---~~l~c~~~c~l~~~e~~i~~~N~~Ayi~iAi~G~~f~~Sak~~~~L~~~~g~ 373 (498)
|++++++++|.++|++|++.++ | +|++||+.||+||+|++++++|||||+++|||||+||+||||||+|+++| +
T Consensus 385 liv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v 463 (577)
T KOG1362|consen 385 LLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-V 463 (577)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-H
Confidence 9999999999999999998864 3 58999999999999999999999999999999999999999999999999 7
Q ss_pred hhhhhhhhhhHHHHHHHHHhHHHHhhhhhHhhhhhcCC--chhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccc
Q 010892 374 EALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVESAVTSIYICYAEDP 450 (498)
Q Consensus 374 ~ali~~~lig~~l~lg~l~v~~l~~l~~~~~~~~~~~~--~~~~~~~~~f~ig-~~i~~~f~~v~~s~vdTifvcf~eDp 450 (498)
.++++.|.+|++++++..+.+.+++.+++++.+..+++ .++.+.+.++++| |+|+++|+++++|+|||+|+||+|||
T Consensus 464 ~~vv~~d~vs~~llflgk~l~~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD~ 543 (577)
T KOG1362|consen 464 LRVVDVDLVSDFLLFLGKLLGAIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDP 543 (577)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEecH
Confidence 88999999999988654455556666778877777777 6777888999999 99999999999999999999999999
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhchhhhhhhc
Q 010892 451 LLIHRWDAEFFNQMSETLHQRLQYRSARAREVL 483 (498)
Q Consensus 451 e~~~~~~p~~~~~m~~~~~~~~~~~~~~~~~~~ 483 (498)
|.+|++ ||++++|.+.+++.++++++ .++++
T Consensus 544 e~n~gs-~~~p~~~~~~l~~~~~~~~~-~~~~~ 574 (577)
T KOG1362|consen 544 ESNDGS-PEKPQFMSEQLLEILGRSNK-APRVQ 574 (577)
T ss_pred hhcCCC-CCcceeeeHHHHHhcccccc-cchhh
Confidence 999998 89999999999999987655 44333
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=1.1e-60 Score=491.00 Aligned_cols=303 Identities=29% Similarity=0.533 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhcccccccc-------
Q 010892 153 WGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDM------- 225 (498)
Q Consensus 153 ~gIv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~~~~~il~~~~~~~w~~~~~g~~~~~~------- 225 (498)
.++++++.+++.+++++++||||+++++++|+|+++++++|+++++|++..++.++|.++|..+..+.+..+.
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4788889999999999999999999999999999999999999999999999999999999987765544320
Q ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHhhccccceeceEEEEeeccCCCCCCCCCchHHHHHHHHHhhcc
Q 010892 226 --------------DDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSL 291 (498)
Q Consensus 226 --------------~~~~~~~l~~~~~f~~~Wt~~vi~~v~~~tvAg~v~~WYF~~~~~~~~~p~~~v~~s~~ra~t~sf 291 (498)
.|+...++.+|++|+++|+++|++|++|+++||++++|||+++++ ++|+.|+.+|++|+++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~--~~~~~~~~~s~~~~~~~~~ 159 (334)
T PF04515_consen 82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKP--NMPKSPVLRSLKRALTYHF 159 (334)
T ss_pred CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcc--cccchHHHHHHHHHHHHhH
Confidence 012446788999999999999999999999999999999998753 7899999999999999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHhccCCc-----hhhHHHHHHHHHHHHHHHHHhchhHHHHHHhcCCchhHhHHHHHH
Q 010892 292 GSICYGSLFTAAIRTLRWEIRGIRSKIGNN-----ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWE 366 (498)
Q Consensus 292 GSIcfGSLIvaii~~lR~ll~~l~~~~~~~-----~~l~c~~~c~l~~~e~~i~~~N~~Ayi~iAi~G~~f~~Sak~~~~ 366 (498)
||+|+|||++++++++|.++++++++.+++ +++.||++||++|+|+++||+|||||+|+|+||++|++|||++++
T Consensus 160 GSi~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~ 239 (334)
T PF04515_consen 160 GSICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFE 239 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 999999999999999999999999987653 478899999999999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhhhhhHHHHHHHHHhHHHHhhhhhHhhhhh----cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010892 367 LFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTK----WHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSI 442 (498)
Q Consensus 367 L~~~~g~~ali~~~lig~~l~lg~l~v~~l~~l~~~~~~~~~----~~~~~~~~~~~~f~ig~~i~~~f~~v~~s~vdTi 442 (498)
|++||+.++..+|++.+.++.+|+++++..+++.++.+.... +.+.+..+.++++++++.+++++++++++++||+
T Consensus 240 L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti 319 (334)
T PF04515_consen 240 LIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTI 319 (334)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999898888899999999999988877765532 2234677889999999999999999999999999
Q ss_pred HHHHhccchhhccCC
Q 010892 443 YICYAEDPLLIHRWD 457 (498)
Q Consensus 443 fvcf~eDpe~~~~~~ 457 (498)
|+||+||||.+++++
T Consensus 320 ~vc~~~d~e~~~~~~ 334 (334)
T PF04515_consen 320 FVCYAEDPEMNKNDG 334 (334)
T ss_pred HHHHHHHhhhhhcCC
Confidence 999999999987653
No 3
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=75.73 E-value=18 Score=34.75 Aligned_cols=23 Identities=4% Similarity=0.128 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHH
Q 010892 154 GVAFATAAALQFLYVISVIDRLS 176 (498)
Q Consensus 154 gIv~~i~~~l~~~~~~~~r~RI~ 176 (498)
.++.++++++.....+++|||-+
T Consensus 180 ~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455666666666677777754
No 4
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=56.12 E-value=1.1e+02 Score=27.48 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=28.0
Q ss_pred hHHHHHHhcCCchhHhHHHHHHHHHhccchh
Q 010892 345 YAYVQIAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 345 ~Ayi~iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
++.-.+.+.++++.+|-|++|++.|.|.++.
T Consensus 105 f~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 105 FVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 5777889999999999999999999998774
No 5
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=48.47 E-value=14 Score=39.75 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 010892 3 DSPAPSSNSDPGSISAVDQTGGR 25 (498)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (498)
++|.|.|+|+|.+.+.|.|+.+|
T Consensus 3 ~~p~P~P~P~P~P~P~P~P~PeP 25 (465)
T PF01690_consen 3 DEPPPSPGPSPTPPPPPAPTPEP 25 (465)
T ss_pred CCCCCCCCCCCCCCCCCcccCCC
Confidence 45677777776555434443333
No 6
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=37.09 E-value=4.6e+02 Score=27.87 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhchhHHHHHHhcCCchhHhHHHHHHHHHhc
Q 010892 330 FLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 371 (498)
Q Consensus 330 c~l~~~e~~i~~~N~~Ayi~iAi~G~~f~~Sak~~~~L~~~~ 371 (498)
-.+++-|.-+--.|||=+=+.|-.|. +.||++-+|+++.
T Consensus 17 AfFSgSETal~a~nr~Rlr~la~~G~---~~Akrv~kLL~k~ 55 (423)
T COG4536 17 AFFSGSETALTALNRYRLRHLAKQGN---RGAKRVEKLLEKP 55 (423)
T ss_pred HHhcccHHHHhhccHHHHHHHHHccc---hhhHHHHHHhcCc
Confidence 45678899999999999999999997 6899999999986
No 7
>PRK15410 DgsA anti-repressor MtfA; Provisional
Probab=36.03 E-value=18 Score=36.25 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.7
Q ss_pred HHhccchhhccCChhHHHHHHHHHHH
Q 010892 445 CYAEDPLLIHRWDAEFFNQMSETLHQ 470 (498)
Q Consensus 445 cf~eDpe~~~~~~p~~~~~m~~~~~~ 470 (498)
.|-|.|+.+++.||++|+.+.+-|.|
T Consensus 219 ~FFE~P~~l~~~~P~LY~~L~~~yrq 244 (260)
T PRK15410 219 YFFSAPELFAPRFPALYQRFCQFYRQ 244 (260)
T ss_pred hhhhCHHHHHHhCHHHHHHHHHHhCC
Confidence 36689999999999999999987765
No 8
>PRK09752 adhesin; Provisional
Probab=34.90 E-value=36 Score=40.78 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=5.6
Q ss_pred eceEEEEee
Q 010892 257 SGMVFLVLI 265 (498)
Q Consensus 257 Ag~v~~WYF 265 (498)
.|.+++||=
T Consensus 1063 vGlYaTWy~ 1071 (1250)
T PRK09752 1063 VGLTSSWFQ 1071 (1250)
T ss_pred eeeEEEEEe
Confidence 456667774
No 9
>PHA02844 putative transmembrane protein; Provisional
Probab=34.23 E-value=54 Score=26.28 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 010892 96 DYWPIYAVAGGVGALLGWMWLLLLG 120 (498)
Q Consensus 96 ~~~~ll~~~~~va~vls~~~l~llr 120 (498)
.+|.+.++..++.+++.++||.+.|
T Consensus 49 ~~~ii~i~~v~~~~~~~flYLK~~~ 73 (75)
T PHA02844 49 KIWILTIIFVVFATFLTFLYLKAVP 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec
Confidence 3444444455666677777776654
No 10
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=32.62 E-value=75 Score=26.39 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=18.5
Q ss_pred CCCCCCccCCCCCCccccCCCCccchHHHHHHHHHHHHH
Q 010892 21 QTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGL 59 (498)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~k~~D~~~~ilFl~~l~~~ 59 (498)
|+.++|.++ .+++.+..=|-.-+|..-..--++..++|
T Consensus 2 P~~e~Ps~g-~~~~~~~~i~~y~~d~~~l~gLv~~a~af 39 (87)
T PF11190_consen 2 PTVEPPSSG-GGGGIMETIKGYAKDGVLLLGLVLAAAAF 39 (87)
T ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556555 33444433234456765544444444444
No 11
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=32.13 E-value=5.1e+02 Score=25.60 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q 010892 1 MSDSPAPSSNSDP 13 (498)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (498)
|+..|.|+|.+++
T Consensus 1 m~~pp~~~~~~~~ 13 (237)
T KOG2322|consen 1 MSGPPPPYPETSS 13 (237)
T ss_pred CCCCCCCCCCCCC
Confidence 6778888888876
No 12
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=31.55 E-value=65 Score=35.05 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhccchhhccCChhHHHHHHHHHHHHHHhchhh
Q 010892 433 VVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSAR 478 (498)
Q Consensus 433 ~v~~s~vdTifvcf~eDpe~~~~~~p~~~~~m~~~~~~~~~~~~~~ 478 (498)
.||.+..-|++-|||.|||. .+|||.-+++. .+-+++.++...
T Consensus 77 ~Vy~~i~itvLacFC~~pEl--Ash~~~v~~IP-~llev~~~~~d~ 119 (698)
T KOG2611|consen 77 DVYLQISITVLACFCRVPEL--ASHEEMVSRIP-LLLEVMSKGIDT 119 (698)
T ss_pred HHHHHHHHHHHHHHhCChhh--ccCHHHHHhhh-HHHHHHHhcCCC
Confidence 46777777899999999997 45887665544 344566665543
No 13
>PF06167 Peptidase_M90: Glucose-regulated metallo-peptidase M90; InterPro: IPR010384 MtfA (earlier known as YeeI) is a transcription factor that binds Mlc (make large colonies), itself a repressor of glucose and hence a protein important in regulation of the phosphoenolpyruvate:glucose-phosphotransferase (PtsG) system, the major glucose transporter in Escherichia coli. Mlc is a repressor of ptsG, and MtfA is found to bind and inactivate Mlc with high affinity []. The membrane-bound protein EIICBGlc encoded by the ptsG gene is the major glucose transporter in E. coli. ; PDB: 3DL1_A 3KHI_A.
Probab=28.30 E-value=33 Score=34.17 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=19.1
Q ss_pred HHhccchhhccCChhHHHHHHHHH
Q 010892 445 CYAEDPLLIHRWDAEFFNQMSETL 468 (498)
Q Consensus 445 cf~eDpe~~~~~~p~~~~~m~~~~ 468 (498)
.|-|.|+.++..+||+|+.|.+-|
T Consensus 229 ~FFe~P~~l~~~~P~lY~~L~~~y 252 (253)
T PF06167_consen 229 YFFERPQQLKAEFPELYEQLSQFY 252 (253)
T ss_dssp HHHH-HHHCTTT-HHHHHHHHHHH
T ss_pred hhhcCcHHHHHHCHHHHHHHHHHh
Confidence 466899999999999999998765
No 14
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=27.21 E-value=50 Score=26.78 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.3
Q ss_pred HHHHHHhchhHHHHHHhcCCchhHhHHHHHHHHHhcc
Q 010892 336 ETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTG 372 (498)
Q Consensus 336 e~~i~~~N~~Ayi~iAi~G~~f~~Sak~~~~L~~~~g 372 (498)
+.+++|+|+.+ |+.|..+++.+.++++.|-
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR~ 31 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKARW 31 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHHH
Confidence 46789999886 9999999999999999984
No 15
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=24.29 E-value=41 Score=28.80 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=22.8
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-|||.+-|..+|++.+++++||++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVDY 26 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCce
Confidence 3799999999999999999999874
No 16
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=24.22 E-value=65 Score=34.76 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCC
Q 010892 8 SSNSDPGSISAVDQTGGRSRRSTD 31 (498)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (498)
+|+|+|+++++|.|+..|+-.+++
T Consensus 4 ~p~P~P~P~P~P~P~P~P~PePtP 27 (465)
T PF01690_consen 4 EPPPSPGPSPTPPPPPAPTPEPTP 27 (465)
T ss_pred CCCCCCCCCCCCCCCCcccCCCcc
Confidence 456666666555554555444444
No 17
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=23.81 E-value=7.1e+02 Score=25.10 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=27.3
Q ss_pred CccCCCCC-CccccC---CCCccchHHHHHHHHHHHHHHHHHHHHhcccc
Q 010892 26 SRRSTDGS-QTLLSE---SRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRF 71 (498)
Q Consensus 26 ~~~~~~~~-~~~~~~---~~k~~D~~~~ilFl~~l~~~~~~~~~~~~~~~ 71 (498)
+-|++||| +.++.+ -|+||- ++-+=|+=-+++. +-.+..|..+.
T Consensus 30 AVRr~dGsi~~~~~~~~~~~~~n~-~~kiPflRG~v~l-iesl~~G~k~L 77 (318)
T COG3872 30 AVRRPDGSIEYFKLDKKKIPGWNK-FKKIPFLRGFVSL-IESLVIGIKHL 77 (318)
T ss_pred EEecCCCceEEEEcccccCcchhh-hcCCcHHHHHHHH-HHHHHhhhhhe
Confidence 44677777 555553 366777 6667777666555 45555666554
No 18
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.38 E-value=3.3e+02 Score=26.74 Aligned_cols=12 Identities=0% Similarity=0.282 Sum_probs=4.6
Q ss_pred HHhhhHHHHHHH
Q 010892 146 FWCDQFFWGVAF 157 (498)
Q Consensus 146 ~~~~~~~~gIv~ 157 (498)
+..+.|+..+++
T Consensus 47 ~l~~~~~~~~i~ 58 (224)
T PF13829_consen 47 LLFGSWWYWLII 58 (224)
T ss_pred HHHccHHHHHHH
Confidence 333444333333
No 19
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=20.14 E-value=58 Score=25.16 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=22.0
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-+|+++-|+.++++.+++++++++.
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~gi~~ 28 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLPY 28 (73)
T ss_pred EEEecCCChhHHHHHHHHHHCCCce
Confidence 3788999999999999999998874
Done!