Query 010892
Match_columns 498
No_of_seqs 215 out of 670
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3khi_A Putative metal-dependen 28.6 19 0.00066 34.7 1.4 25 446-470 222-246 (267)
2 3f0i_A Arsenate reductase; str 17.9 48 0.0016 27.5 1.7 26 350-375 6-31 (119)
3 3rdw_A Putative arsenate reduc 17.1 51 0.0017 27.4 1.6 26 350-375 7-32 (121)
4 2lqo_A Putative glutaredoxin R 16.7 36 0.0012 26.9 0.6 26 350-375 6-31 (92)
5 3fz4_A Putative arsenate reduc 16.0 44 0.0015 27.8 0.9 27 349-375 4-30 (120)
6 3gkx_A Putative ARSC family re 14.9 52 0.0018 27.3 1.2 26 350-375 6-31 (120)
7 1rw1_A Conserved hypothetical 14.9 51 0.0017 26.9 1.0 25 351-375 3-27 (114)
8 2kok_A Arsenate reductase; bru 13.9 54 0.0018 27.1 0.9 26 350-375 7-32 (120)
9 1s3c_A Arsenate reductase; ARS 13.7 70 0.0024 27.4 1.7 26 350-375 4-29 (141)
10 3l78_A Regulatory protein SPX; 13.3 60 0.002 26.9 1.0 26 350-375 2-27 (120)
No 1
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Probab=28.60 E-value=19 Score=34.75 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.0
Q ss_pred HhccchhhccCChhHHHHHHHHHHH
Q 010892 446 YAEDPLLIHRWDAEFFNQMSETLHQ 470 (498)
Q Consensus 446 f~eDpe~~~~~~p~~~~~m~~~~~~ 470 (498)
|-|.|+.+++.||++|+.+.+-|.|
T Consensus 222 FFe~P~~l~~~~P~LY~~L~~fyrq 246 (267)
T 3khi_A 222 FFSAPELFAPRFPALWQRFCHFYRQ 246 (267)
T ss_dssp HHHCHHHHTTTCHHHHHHHHHHHTC
T ss_pred HHhCcHHHHHHCHHHHHHHHHHHCc
Confidence 5579999999999999999988774
No 2
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=17.94 E-value=48 Score=27.53 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=23.7
Q ss_pred HHhcCCchhHhHHHHHHHHHhccchh
Q 010892 350 IAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 350 iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
+-+||.+-|..+|++.++++++|++.
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~ 31 (119)
T 3f0i_A 6 VVIYHNPKCSKSRETLALLENQGIAP 31 (119)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCce
Confidence 56899999999999999999999864
No 3
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=17.08 E-value=51 Score=27.44 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=23.5
Q ss_pred HHhcCCchhHhHHHHHHHHHhccchh
Q 010892 350 IAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 350 iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
+-+||++-|..+|++-++++++|++.
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~ 32 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITP 32 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 45899999999999999999999774
No 4
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=16.75 E-value=36 Score=26.95 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=22.0
Q ss_pred HHhcCCchhHhHHHHHHHHHhccchh
Q 010892 350 IAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 350 iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
+-+|+++.|.-++++-++++++|++.
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~y 31 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIAY 31 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCCC
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCce
Confidence 35789998888889999999999874
No 5
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=16.00 E-value=44 Score=27.82 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=24.0
Q ss_pred HHHhcCCchhHhHHHHHHHHHhccchh
Q 010892 349 QIAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 349 ~iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
++-+||.+-|..+|++-++++++|++.
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~ 30 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDY 30 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCE
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCce
Confidence 356899999999999999999999774
No 6
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=14.92 E-value=52 Score=27.32 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.6
Q ss_pred HHhcCCchhHhHHHHHHHHHhccchh
Q 010892 350 IAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 350 iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
+-+||.+-|..+|++-++++++|++.
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~ 31 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEY 31 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCce
Confidence 56899999999999999999999774
No 7
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=14.90 E-value=51 Score=26.94 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.6
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-+||++-|..+|++-++++++|++.
T Consensus 3 ~iY~~~~C~~C~kak~~L~~~gi~~ 27 (114)
T 1rw1_A 3 VLYGIKACDTMKKARTWLDEHKVAY 27 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCChHHHHHHHHHHHCCCce
Confidence 3799999999999999999999874
No 8
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=13.92 E-value=54 Score=27.06 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.5
Q ss_pred HHhcCCchhHhHHHHHHHHHhccchh
Q 010892 350 IAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 350 iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
+-+||++-|..++++-++++++|++.
T Consensus 7 i~iY~~~~C~~C~ka~~~L~~~gi~y 32 (120)
T 2kok_A 7 VTIYGIKNCDTMKKARIWLEDHGIDY 32 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCChHHHHHHHHHHHcCCcE
Confidence 45899999999999999999999874
No 9
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=13.69 E-value=70 Score=27.39 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=23.5
Q ss_pred HHhcCCchhHhHHHHHHHHHhccchh
Q 010892 350 IAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 350 iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
+-+||++-|..+|++-++++++|++.
T Consensus 4 itiY~~p~C~~crkak~~L~~~gi~~ 29 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRNSGTEP 29 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCE
Confidence 34899999999999999999999884
No 10
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=13.30 E-value=60 Score=26.87 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.1
Q ss_pred HHhcCCchhHhHHHHHHHHHhccchh
Q 010892 350 IAVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 350 iAi~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
+-+||++-|..+|++-++++++|++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~ 27 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWLNRHDVVF 27 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 34799999999999999999999774
Done!