Query 010892
Match_columns 498
No_of_seqs 215 out of 670
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 16:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010892.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010892hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 18.5 2.2E+02 0.016 24.6 9.0 52 146-215 23-75 (248)
2 d1kqfc_ f.21.1.1 (C:) Formate 15.6 1.5E+02 0.011 24.4 6.9 45 422-467 161-206 (216)
3 d1rw1a_ c.47.1.12 (A:) Hypothe 14.2 25 0.0019 26.9 1.0 25 352-376 4-28 (114)
4 d1nm3a1 c.47.1.1 (A:166-239) C 13.4 28 0.002 24.2 0.9 25 351-375 8-32 (74)
5 d1r7ha_ c.47.1.1 (A:) Glutared 12.5 33 0.0024 23.7 1.2 25 351-375 4-28 (74)
6 d1egoa_ c.47.1.1 (A:) Glutared 12.4 34 0.0025 24.4 1.3 23 351-373 4-26 (85)
7 d1z3ea1 c.47.1.12 (A:1-114) Re 10.3 42 0.003 25.6 1.2 25 351-375 3-27 (114)
8 d1h75a_ c.47.1.1 (A:) Glutared 9.9 45 0.0033 23.1 1.2 25 351-375 4-28 (76)
9 d1j9ba_ c.47.1.12 (A:) Arsenat 9.2 58 0.0042 25.7 1.7 25 351-375 3-27 (138)
10 d1fova_ c.47.1.1 (A:) Glutared 7.3 62 0.0045 22.6 0.9 25 351-375 4-28 (82)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.55 E-value=2.2e+02 Score=24.59 Aligned_cols=52 Identities=8% Similarity=0.157 Sum_probs=25.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHH-HHHHHHHHHHHHHH
Q 010892 146 FWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYV-FMAVMLLWMGIWSF 215 (498)
Q Consensus 146 ~~~~~~~~gIv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~~~-~~il~~~~~~~w~~ 215 (498)
+-.+.|.+++++++..++. .+++ ..|| ..|.-++.|=+ ++++..+|-+++..
T Consensus 23 ~~~~~~~~a~~~~~~~~~~-~~vy-~s~r----------------~~p~kyi~PG~~~l~~Fvi~Pi~yT~ 75 (248)
T d2r6gf1 23 YAQGEYLFAITTLILSSAG-LYIF-ANRK----------------AYAWRYVYPGMAGMGLFVLFPLVCTI 75 (248)
T ss_dssp HGGGCHHHHHHHHHHHHHH-HHHH-SSSC----------------CTTHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHcchHHHHHHHHHHHHhe-EEEE-EccC----------------ccceehhhhHHHHHHHHHHHhheeEE
Confidence 3345676666555544432 2333 3343 36666666644 33333344444444
No 2
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=15.56 E-value=1.5e+02 Score=24.45 Aligned_cols=45 Identities=7% Similarity=0.214 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhccCChhHHHHHHHH
Q 010892 422 LMGMVLVGLAMVVVE-SAVTSIYICYAEDPLLIHRWDAEFFNQMSET 467 (498)
Q Consensus 422 ~ig~~i~~~f~~v~~-s~vdTifvcf~eDpe~~~~~~p~~~~~m~~~ 467 (498)
++++.+.++++.+.. ...++++-++. |.|..++.||.-++|+.++
T Consensus 161 ~~~~vi~Hvy~a~~~~~~l~~M~tG~v-~~~~~~~~h~~w~~~~~~~ 206 (216)
T d1kqfc_ 161 LIHAILIHMYMAFWVKGSIKGMIEGKV-SRRWAKKHHPRWYREIEKA 206 (216)
T ss_dssp HHHHHHHHHHHHHHBTTHHHHHHTCEE-EHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccccchhheeec-cHHHHHHHHHHHHHHHHhc
Confidence 345566677766533 45667666665 4455577788877776654
No 3
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.23 E-value=25 Score=26.87 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.9
Q ss_pred hcCCchhHhHHHHHHHHHhccchhh
Q 010892 352 VYGKGFNRSARDAWELFQSTGVEAL 376 (498)
Q Consensus 352 i~G~~f~~Sak~~~~L~~~~g~~al 376 (498)
+||.+=|.++|++.+.+++||++.-
T Consensus 4 iY~~p~Cs~srka~~~L~~~~i~~~ 28 (114)
T d1rw1a_ 4 LYGIKACDTMKKARTWLDEHKVAYD 28 (114)
T ss_dssp EEECSSCHHHHHHHHHHHHTTCCEE
T ss_pred EEECCCChHHHHHHHHHHHcCCCeE
Confidence 7999999999999999999998853
No 4
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=13.36 E-value=28 Score=24.20 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=20.0
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-||+++.|.=++++-+++++++++.
T Consensus 8 ~iYs~~~C~~C~~ak~lL~~~~i~~ 32 (74)
T d1nm3a1 8 SIFTKPGCPFCAKAKQLLHDKGLSF 32 (74)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCCC
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCe
Confidence 4678888888888888999998763
No 5
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=12.49 E-value=33 Score=23.67 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.4
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-+|+++.|.-++++-++++++|++.
T Consensus 4 ~iYt~~~C~~C~~ak~~L~~~~i~~ 28 (74)
T d1r7ha_ 4 TLYTKPACVQCTATKKALDRAGLAY 28 (74)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCChhHHHHHHHHHHcCCce
Confidence 4788888888889999999999874
No 6
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=12.37 E-value=34 Score=24.41 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=18.0
Q ss_pred HhcCCchhHhHHHHHHHHHhccc
Q 010892 351 AVYGKGFNRSARDAWELFQSTGV 373 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~ 373 (498)
-||+++.|+-++++-+|++++|.
T Consensus 4 viysk~~Cp~C~~aK~ll~~~~~ 26 (85)
T d1egoa_ 4 VIFGRSGCPYCVRAKDLAEKLSN 26 (85)
T ss_dssp EEECCTTSTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHhHHHHHHHHHHcCC
Confidence 36788888888888888888764
No 7
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=10.28 E-value=42 Score=25.57 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=22.9
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-+||.+=|..+|+|.+.+++||++.
T Consensus 3 ~ly~~~~C~~~rka~~~L~~~~i~~ 27 (114)
T d1z3ea1 3 TLYTSPSCTSCRKARAWLEEHEIPF 27 (114)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCCCHHHHHHHHHHHHCCCCe
Confidence 4799999999999999999999884
No 8
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=9.90 E-value=45 Score=23.12 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=21.3
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-+|+++-|.-++++-+++.++|++.
T Consensus 4 ~iYs~~~C~~C~~ak~~L~~~~i~y 28 (76)
T d1h75a_ 4 TIYTRNDCVQCHATKRAMENRGFDF 28 (76)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCCccHHHHHHHHHhcCcee
Confidence 4788888888888989999999874
No 9
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=9.16 E-value=58 Score=25.72 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=22.8
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-+||.+=|..+|+|.++++.+|++.
T Consensus 3 ~iY~~p~Cs~srkal~~L~~~~i~~ 27 (138)
T d1j9ba_ 3 TIYHNPACGTSRNTLEMIRNSGTEP 27 (138)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCe
Confidence 4789999999999999999999874
No 10
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=7.35 E-value=62 Score=22.63 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=19.4
Q ss_pred HhcCCchhHhHHHHHHHHHhccchh
Q 010892 351 AVYGKGFNRSARDAWELFQSTGVEA 375 (498)
Q Consensus 351 Ai~G~~f~~Sak~~~~L~~~~g~~a 375 (498)
-+|+++.|+=++++-++++++++..
T Consensus 4 ~iys~~~Cp~C~~ak~~L~~~~i~y 28 (82)
T d1fova_ 4 EIYTKETCPYCHRAKALLSSKGVSF 28 (82)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCCC
T ss_pred EEEeCCCCHhHHHHHHHHHHcCCCe
Confidence 3677777777778888899988774
Done!