Query 010895
Match_columns 498
No_of_seqs 178 out of 858
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 1E-134 2E-139 1073.9 51.4 497 1-497 1-497 (497)
2 PLN02596 hexokinase-like 100.0 1E-131 2E-136 1048.1 50.8 485 1-492 2-487 (490)
3 PLN02362 hexokinase 100.0 2E-131 4E-136 1052.0 49.8 493 1-494 1-503 (509)
4 PLN02914 hexokinase 100.0 4E-129 1E-133 1028.1 45.6 481 10-492 4-490 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 4E-118 9E-123 930.1 39.4 449 31-495 21-473 (474)
6 PTZ00107 hexokinase; Provision 100.0 2E-116 5E-121 930.2 45.4 430 37-492 7-463 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 4E-102 8E-107 789.0 39.9 450 32-495 12-465 (466)
8 PF03727 Hexokinase_2: Hexokin 100.0 1.4E-64 3E-69 498.6 19.8 241 244-491 1-243 (243)
9 PF00349 Hexokinase_1: Hexokin 100.0 2.3E-57 4.9E-62 435.4 21.7 202 36-242 2-206 (206)
10 PRK13310 N-acetyl-D-glucosamin 99.9 1.9E-22 4E-27 204.9 27.2 291 97-486 2-300 (303)
11 PRK09698 D-allose kinase; Prov 99.9 1.8E-22 4E-27 204.8 27.0 285 94-486 3-294 (302)
12 TIGR00744 ROK_glcA_fam ROK fam 99.9 2.6E-22 5.7E-27 204.9 28.1 301 98-487 1-309 (318)
13 COG1940 NagC Transcriptional r 99.9 3.7E-21 8E-26 196.3 28.5 295 93-488 4-307 (314)
14 PRK09557 fructokinase; Reviewe 99.9 5.4E-21 1.2E-25 194.1 27.9 290 97-486 2-299 (301)
15 PRK05082 N-acetylmannosamine k 99.9 4.5E-21 9.8E-26 193.7 26.9 278 97-486 3-286 (291)
16 PRK00292 glk glucokinase; Prov 99.8 6.9E-19 1.5E-23 180.0 21.5 290 96-486 3-313 (316)
17 PRK13311 N-acetyl-D-glucosamin 99.8 1.9E-18 4.2E-23 171.7 22.6 240 96-423 1-246 (256)
18 PRK12408 glucokinase; Provisio 99.8 4.9E-19 1.1E-23 182.8 18.6 296 90-486 10-331 (336)
19 PRK14101 bifunctional glucokin 99.7 1.3E-15 2.8E-20 169.9 19.5 290 94-487 17-329 (638)
20 PF00480 ROK: ROK family; Int 99.6 2E-15 4.3E-20 141.4 14.2 175 99-323 1-179 (179)
21 TIGR00749 glk glucokinase, pro 99.6 4E-15 8.6E-20 152.4 14.4 289 98-483 1-316 (316)
22 PTZ00288 glucokinase 1; Provis 99.5 3.5E-11 7.7E-16 126.7 28.0 336 60-490 6-392 (405)
23 PF01869 BcrAD_BadFG: BadF/Bad 99.1 3.8E-08 8.3E-13 98.5 24.8 271 98-486 1-271 (271)
24 KOG1794 N-Acetylglucosamine ki 98.9 6.6E-07 1.4E-11 88.6 23.6 313 94-489 2-317 (336)
25 PF02685 Glucokinase: Glucokin 98.7 4.6E-07 9.9E-12 93.0 16.6 291 98-487 1-314 (316)
26 TIGR02707 butyr_kinase butyrat 98.5 1.7E-05 3.7E-10 82.6 22.2 65 396-475 265-329 (351)
27 smart00732 YqgFc Likely ribonu 98.4 4.6E-07 9.9E-12 76.4 6.7 97 96-237 2-99 (99)
28 COG2971 Predicted N-acetylgluc 98.2 0.00048 1E-08 69.5 23.3 277 94-486 4-289 (301)
29 PRK03011 butyrate kinase; Prov 97.9 0.0014 3.1E-08 68.5 21.6 290 96-479 3-335 (358)
30 COG0837 Glk Glucokinase [Carbo 97.5 0.019 4E-07 58.0 20.0 182 96-330 7-206 (320)
31 PF00370 FGGY_N: FGGY family o 97.0 0.0035 7.6E-08 61.7 9.0 61 96-159 1-64 (245)
32 PRK13318 pantothenate kinase; 96.8 0.0023 4.9E-08 63.9 5.8 50 97-159 2-51 (258)
33 COG1069 AraB Ribulose kinase [ 96.6 0.59 1.3E-05 50.9 22.7 75 402-490 406-480 (544)
34 PRK00976 hypothetical protein; 96.2 0.016 3.5E-07 59.5 8.1 76 395-488 236-311 (326)
35 TIGR01312 XylB D-xylulose kina 96.2 0.02 4.4E-07 61.9 9.3 76 98-180 1-81 (481)
36 TIGR01311 glycerol_kin glycero 95.8 0.032 6.9E-07 60.8 8.6 62 96-160 2-66 (493)
37 TIGR01315 5C_CHO_kinase FGGY-f 95.8 0.035 7.5E-07 61.4 8.9 73 97-176 2-77 (541)
38 TIGR01314 gntK_FGGY gluconate 95.7 0.043 9.4E-07 60.0 9.1 61 96-159 1-64 (505)
39 PRK13321 pantothenate kinase; 95.5 0.017 3.8E-07 57.6 5.0 48 97-153 2-49 (256)
40 PRK00047 glpK glycerol kinase; 95.5 0.044 9.6E-07 59.8 8.6 62 96-160 6-70 (498)
41 PRK10939 autoinducer-2 (AI-2) 95.5 0.051 1.1E-06 59.7 8.8 61 96-159 4-69 (520)
42 TIGR01234 L-ribulokinase L-rib 95.3 0.052 1.1E-06 59.9 8.4 61 96-159 2-77 (536)
43 PRK15027 xylulokinase; Provisi 95.3 0.067 1.4E-06 58.2 8.9 60 96-158 1-63 (484)
44 PRK10331 L-fuculokinase; Provi 94.9 0.098 2.1E-06 56.7 8.8 60 96-158 3-67 (470)
45 PTZ00294 glycerol kinase-like 94.7 0.13 2.8E-06 56.3 9.3 61 96-159 3-66 (504)
46 COG1070 XylB Sugar (pentulose 94.7 0.11 2.4E-06 56.8 8.7 63 95-159 4-69 (502)
47 TIGR03286 methan_mark_15 putat 94.7 4.3 9.4E-05 43.2 19.9 24 90-113 139-162 (404)
48 PLN02295 glycerol kinase 94.3 0.15 3.4E-06 55.8 8.7 62 96-160 1-65 (512)
49 TIGR02628 fuculo_kin_coli L-fu 94.2 0.16 3.5E-06 55.0 8.4 59 96-157 2-65 (465)
50 PRK04123 ribulokinase; Provisi 94.2 0.19 4E-06 55.6 9.0 62 96-160 4-75 (548)
51 PTZ00009 heat shock 70 kDa pro 93.4 1.5 3.2E-05 49.8 14.6 48 206-255 154-205 (653)
52 PF00012 HSP70: Hsp70 protein; 93.4 6.1 0.00013 43.9 19.3 54 205-260 148-205 (602)
53 KOG2517 Ribulose kinase and re 91.2 1.6 3.5E-05 47.7 10.7 94 94-201 5-103 (516)
54 PTZ00186 heat shock 70 kDa pre 90.7 7.6 0.00016 44.2 16.0 83 392-491 322-404 (657)
55 PF02782 FGGY_C: FGGY family o 90.3 2.4 5.2E-05 39.8 10.0 76 397-489 122-197 (198)
56 TIGR00241 CoA_E_activ CoA-subs 89.0 1.1 2.3E-05 44.4 6.7 49 96-159 1-49 (248)
57 COG1924 Activator of 2-hydroxy 88.9 34 0.00074 36.1 20.5 101 91-246 131-231 (396)
58 PLN02669 xylulokinase 88.5 1.7 3.6E-05 48.4 8.6 63 87-155 3-81 (556)
59 TIGR01174 ftsA cell division p 88.2 29 0.00063 36.3 17.3 55 205-261 157-214 (371)
60 COG0554 GlpK Glycerol kinase [ 86.9 1.5 3.2E-05 47.3 6.6 85 94-195 4-92 (499)
61 TIGR02627 rhamnulo_kin rhamnul 86.5 1.4 2.9E-05 47.6 6.3 59 98-156 1-63 (454)
62 TIGR01175 pilM type IV pilus a 83.8 9.5 0.00021 39.3 10.9 62 96-159 4-65 (348)
63 PRK15080 ethanolamine utilizat 82.8 19 0.00041 36.1 12.2 115 89-238 18-132 (267)
64 PF07318 DUF1464: Protein of u 80.7 78 0.0017 33.1 17.9 48 435-487 263-314 (343)
65 PRK13324 pantothenate kinase; 79.3 10 0.00023 37.9 8.8 46 97-151 2-48 (258)
66 PRK13410 molecular chaperone D 77.0 5.7 0.00012 45.3 6.9 83 392-491 297-379 (668)
67 PTZ00400 DnaK-type molecular c 76.4 5.9 0.00013 45.1 6.9 83 392-491 336-418 (663)
68 COG4972 PilM Tfp pilus assembl 75.4 8.7 0.00019 39.7 7.0 119 96-225 11-168 (354)
69 PRK05183 hscA chaperone protei 74.2 5.9 0.00013 44.7 6.1 83 392-491 297-379 (616)
70 CHL00094 dnaK heat shock prote 73.2 7.9 0.00017 43.7 6.8 83 392-491 297-379 (621)
71 KOG2517 Ribulose kinase and re 73.0 34 0.00075 37.6 11.2 49 435-492 417-465 (516)
72 COG5146 PanK Pantothenate kina 72.9 14 0.0003 36.7 7.3 174 96-304 19-199 (342)
73 smart00842 FtsA Cell division 69.3 40 0.00086 31.6 9.7 57 97-158 1-59 (187)
74 PRK00290 dnaK molecular chaper 68.7 7.2 0.00016 44.0 5.2 83 392-491 295-377 (627)
75 TIGR00671 baf pantothenate kin 67.3 17 0.00036 36.0 6.9 45 98-151 2-46 (243)
76 PLN03184 chloroplast Hsp70; Pr 66.3 13 0.00027 42.5 6.5 83 392-491 334-416 (673)
77 TIGR01314 gntK_FGGY gluconate 64.0 35 0.00076 37.3 9.3 77 397-490 374-450 (505)
78 TIGR02350 prok_dnaK chaperone 63.8 83 0.0018 35.2 12.4 83 392-491 293-375 (595)
79 TIGR02529 EutJ ethanolamine ut 62.8 1.2E+02 0.0026 29.8 12.0 28 209-238 78-105 (239)
80 PRK01433 hscA chaperone protei 59.7 1.5E+02 0.0032 33.4 13.4 80 392-490 279-358 (595)
81 PRK10939 autoinducer-2 (AI-2) 59.5 49 0.0011 36.3 9.5 77 397-490 382-458 (520)
82 COG1070 XylB Sugar (pentulose 59.2 2.7E+02 0.0059 30.4 17.4 77 397-490 374-450 (502)
83 TIGR00904 mreB cell shape dete 58.5 2.1E+02 0.0046 29.2 13.5 31 208-240 114-144 (333)
84 COG0443 DnaK Molecular chapero 57.3 3.2E+02 0.007 30.7 21.4 52 208-261 136-189 (579)
85 PF11104 PilM_2: Type IV pilus 57.0 43 0.00094 34.6 8.1 60 99-160 1-60 (340)
86 PRK13411 molecular chaperone D 56.3 33 0.00071 39.0 7.6 84 392-491 296-379 (653)
87 TIGR00555 panK_eukar pantothen 56.2 25 0.00055 35.7 5.9 45 435-483 233-277 (279)
88 PRK13326 pantothenate kinase; 55.9 29 0.00064 34.8 6.4 45 96-149 7-51 (262)
89 PTZ00294 glycerol kinase-like 54.4 65 0.0014 35.2 9.3 46 436-490 410-455 (504)
90 TIGR01312 XylB D-xylulose kina 54.2 72 0.0016 34.3 9.6 47 436-491 394-440 (481)
91 PRK00109 Holliday junction res 52.2 1.4E+02 0.003 26.9 9.5 23 94-116 3-25 (138)
92 COG1521 Pantothenate kinase ty 51.7 89 0.0019 31.3 8.9 44 97-149 2-45 (251)
93 PF11215 DUF3010: Protein of u 51.0 45 0.00097 30.3 6.0 62 96-161 2-63 (138)
94 PRK13929 rod-share determining 50.4 3E+02 0.0065 28.3 14.1 45 209-255 115-161 (335)
95 PF05378 Hydant_A_N: Hydantoin 50.3 45 0.00098 31.3 6.3 49 98-158 2-50 (176)
96 TIGR01991 HscA Fe-S protein as 50.0 26 0.00057 39.4 5.5 83 392-491 281-363 (599)
97 PRK13320 pantothenate kinase; 49.3 43 0.00093 33.2 6.3 17 97-113 4-20 (244)
98 PRK00047 glpK glycerol kinase; 49.3 82 0.0018 34.4 9.1 46 436-490 407-452 (498)
99 KOG0104 Molecular chaperones G 48.1 2.7E+02 0.0059 32.3 12.6 85 392-493 333-418 (902)
100 TIGR02628 fuculo_kin_coli L-fu 47.9 88 0.0019 33.8 9.0 46 436-490 397-442 (465)
101 PRK04123 ribulokinase; Provisi 47.7 78 0.0017 35.0 8.7 47 436-490 442-488 (548)
102 PRK03657 hypothetical protein; 46.4 60 0.0013 30.5 6.4 58 47-105 70-135 (170)
103 TIGR01311 glycerol_kin glycero 46.3 1E+02 0.0022 33.6 9.2 46 436-490 403-448 (493)
104 PRK10331 L-fuculokinase; Provi 45.7 1E+02 0.0022 33.4 9.1 46 436-490 393-438 (470)
105 TIGR03192 benz_CoA_bzdQ benzoy 42.7 44 0.00096 34.2 5.3 69 393-487 217-287 (293)
106 PRK13317 pantothenate kinase; 41.4 23 0.00049 35.9 3.0 47 435-486 225-272 (277)
107 TIGR02259 benz_CoA_red_A benzo 41.3 36 0.00078 36.4 4.4 50 393-459 358-407 (432)
108 TIGR01234 L-ribulokinase L-rib 40.5 1.5E+02 0.0032 32.8 9.4 47 436-490 439-485 (536)
109 COG0145 HyuA N-methylhydantoin 39.6 44 0.00095 38.2 5.2 61 54-114 210-297 (674)
110 PRK15027 xylulokinase; Provisi 38.4 1.9E+02 0.0042 31.4 9.8 48 207-255 209-257 (484)
111 PRK13717 conjugal transfer pro 37.3 99 0.0022 27.6 5.9 53 19-72 34-90 (128)
112 cd00529 RuvC_resolvase Hollida 36.4 2.3E+02 0.005 25.8 8.6 59 96-159 1-59 (154)
113 TIGR03706 exo_poly_only exopol 36.3 1.4E+02 0.0029 30.4 7.8 62 97-158 2-65 (300)
114 TIGR00241 CoA_E_activ CoA-subs 35.9 1.1E+02 0.0023 30.1 6.8 40 436-484 207-247 (248)
115 PRK10640 rhaB rhamnulokinase; 35.8 1.8E+02 0.0038 31.7 9.0 76 397-490 348-423 (471)
116 PLN02295 glycerol kinase 35.5 1.7E+02 0.0037 32.0 8.9 46 436-490 416-461 (512)
117 TIGR03192 benz_CoA_bzdQ benzoy 35.3 1.9E+02 0.0042 29.6 8.5 19 95-113 32-50 (293)
118 COG3734 DgoK 2-keto-3-deoxy-ga 35.1 34 0.00073 34.8 3.0 24 94-117 4-27 (306)
119 PRK09472 ftsA cell division pr 34.2 6E+02 0.013 27.1 17.8 52 208-261 168-222 (420)
120 PRK10854 exopolyphosphatase; P 34.0 1.6E+02 0.0036 32.4 8.4 62 96-157 12-75 (513)
121 TIGR02259 benz_CoA_red_A benzo 31.9 93 0.002 33.4 5.7 48 437-485 380-431 (432)
122 PF03652 UPF0081: Uncharacteri 30.9 1.2E+02 0.0026 27.2 5.6 101 96-239 2-104 (135)
123 PF02075 RuvC: Crossover junct 30.8 2.2E+02 0.0047 25.9 7.4 59 97-160 1-59 (149)
124 PF03309 Pan_kinase: Type III 30.7 1.2E+02 0.0025 29.0 5.9 19 97-115 1-19 (206)
125 TIGR03123 one_C_unchar_1 proba 30.7 38 0.00083 35.0 2.7 31 393-423 248-278 (318)
126 TIGR01315 5C_CHO_kinase FGGY-f 29.9 2.7E+02 0.006 30.7 9.4 47 435-490 446-492 (541)
127 PF14574 DUF4445: Domain of un 29.4 1.1E+02 0.0023 33.0 5.8 82 387-488 295-377 (412)
128 TIGR02627 rhamnulo_kin rhamnul 29.2 2.7E+02 0.0059 29.9 9.0 45 436-490 391-435 (454)
129 PF05402 PqqD: Coenzyme PQQ sy 28.8 1.3E+02 0.0028 22.9 4.9 34 35-68 30-63 (68)
130 TIGR02261 benz_CoA_red_D benzo 27.9 1.6E+02 0.0034 29.7 6.4 49 393-458 188-236 (262)
131 TIGR03123 one_C_unchar_1 proba 27.9 41 0.00088 34.9 2.3 21 94-114 127-147 (318)
132 PRK13317 pantothenate kinase; 27.7 4.3E+02 0.0093 26.7 9.6 22 95-116 2-23 (277)
133 COG0816 Predicted endonuclease 27.1 1.9E+02 0.0042 26.3 6.2 22 95-116 2-23 (141)
134 TIGR02261 benz_CoA_red_D benzo 26.9 1.7E+02 0.0036 29.5 6.4 21 96-116 2-22 (262)
135 PRK11031 guanosine pentaphosph 26.8 2.5E+02 0.0054 30.8 8.3 63 96-158 7-71 (496)
136 PF01548 DEDD_Tnp_IS110: Trans 24.3 1.3E+02 0.0029 26.4 4.8 44 97-149 1-44 (144)
137 PRK10753 transcriptional regul 24.2 1.7E+02 0.0037 24.2 5.0 35 39-73 5-39 (90)
138 TIGR00143 hypF [NiFe] hydrogen 23.9 2.2E+02 0.0047 33.0 7.3 47 435-487 661-711 (711)
139 KOG0162 Myosin class I heavy c 23.6 47 0.001 37.9 1.9 18 140-157 359-376 (1106)
140 PF01968 Hydantoinase_A: Hydan 23.5 74 0.0016 32.3 3.2 20 96-116 78-97 (290)
141 PF13941 MutL: MutL protein 23.3 1.3E+02 0.0029 32.7 5.2 54 96-156 1-54 (457)
142 PF02419 PsbL: PsbL protein; 23.2 88 0.0019 21.7 2.4 29 306-334 2-30 (37)
143 TIGR00250 RNAse_H_YqgF RNAse H 23.2 4.9E+02 0.011 23.1 8.1 17 98-114 1-17 (130)
144 PRK00039 ruvC Holliday junctio 22.9 5.2E+02 0.011 23.9 8.5 22 96-117 3-24 (164)
145 PLN02669 xylulokinase 22.4 3.5E+02 0.0075 30.2 8.5 40 216-256 265-306 (556)
146 PRK00285 ihfA integration host 22.2 1.9E+02 0.0041 24.2 5.0 37 37-73 5-41 (99)
147 TIGR00987 himA integration hos 22.0 1.9E+02 0.0042 24.0 5.0 36 38-73 5-40 (96)
148 PF00022 Actin: Actin; InterP 21.8 1.3E+02 0.0028 31.4 4.8 51 436-489 314-368 (393)
149 KOG3127 Deoxycytidylate deamin 21.8 55 0.0012 32.0 1.8 23 232-254 73-95 (230)
150 smart00411 BHL bacterial (prok 21.6 2.1E+02 0.0045 23.2 5.0 36 38-73 4-39 (90)
151 smart00268 ACTIN Actin. ACTIN 21.5 5.5E+02 0.012 26.5 9.4 123 98-263 4-160 (373)
152 PRK03661 hypothetical protein; 21.5 2.9E+02 0.0064 25.6 6.5 56 47-103 64-127 (164)
153 COG1546 CinA Uncharacterized p 21.3 3.6E+02 0.0078 25.2 6.9 67 48-116 65-139 (162)
154 cd00012 ACTIN Actin; An ubiqui 20.7 6.7E+02 0.015 25.8 9.9 52 436-488 293-347 (371)
155 PRK13331 pantothenate kinase; 20.5 1E+02 0.0022 30.8 3.4 21 93-113 5-25 (251)
156 PF00216 Bac_DNA_binding: Bact 20.0 2.1E+02 0.0046 23.0 4.8 36 38-73 4-39 (90)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=1.1e-134 Score=1073.93 Aligned_cols=497 Identities=89% Similarity=1.334 Sum_probs=462.5
Q ss_pred CCcceeeeehhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcce
Q 010895 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (498)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~M 80 (498)
|+|+.+++++++++++|++++.++++|+++..+|.++++++++++++|.+|.++|++|+++|.+||++||+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (497)
T PLN02405 1 MGKVAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (497)
T ss_pred CCceeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Confidence 88988888888888888888899999988877888899999999999999999999999999999999999866689999
Q ss_pred eecccccCCCCccceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCC
Q 010895 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (498)
Q Consensus 81 lPs~v~~~PtG~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (498)
|||||+++|||+|+|.|||||||||||||++|+|.|++...+.+.+++++||++++.+++++||||||+||.+|+++++.
T Consensus 81 lpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~ 160 (497)
T PLN02405 81 LISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGE 160 (497)
T ss_pred eccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999998876556666667899999999999999999999999999998764
Q ss_pred CCCCCCCCcceeeeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccc
Q 010895 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (498)
Q Consensus 161 ~~~~~~~~~~~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay 240 (498)
+.....++.+|||||||||++|+++++|+|++|||||++++++|+||+++|++||+|+|+||+|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY 240 (497)
T PLN02405 161 DFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRY 240 (497)
T ss_pred ccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhc
Confidence 42222346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeecccc
Q 010895 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (498)
Q Consensus 241 ~~~~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG 320 (498)
.+++|.||+|+|||||+||+|+.++|+|+++..+..++||||||||+|+.+++|+|+||+.+|++|.|||+|+||||+||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (497)
T PLN02405 241 YNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKIISG 320 (497)
T ss_pred CCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHHhh
Confidence 99999999999999999999999999999875556789999999999998889999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Q 010895 321 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCD 400 (498)
Q Consensus 321 ~YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~ 400 (498)
||||||+|++|+++++++.||++..|+.|.+||+|+|++||.|+.|++++++.+.++|++.|+++..+.+|++++|+||+
T Consensus 321 ~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i~~ 400 (497)
T PLN02405 321 MYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVELCN 400 (497)
T ss_pred ccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHH
Q 010895 401 IVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGI 480 (498)
Q Consensus 401 ~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~i 480 (498)
+|.+|||+|+||+|+||+++++....+....++++||||||||++||.|+++++++++++++++..++|.+.+++||||+
T Consensus 401 ~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~DGSGv 480 (497)
T PLN02405 401 IVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSNDGSGI 480 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecCchHH
Confidence 99999999999999999999987422111124689999999999999999999999999998766678999999999999
Q ss_pred HHHHHHHHhcccccccc
Q 010895 481 GAALLAASHSQYLEVEE 497 (498)
Q Consensus 481 GAAi~Aa~~~~~~~~~~ 497 (498)
|||++||+++++.+|||
T Consensus 481 GAAl~AA~~~~~~~~~~ 497 (497)
T PLN02405 481 GAALLAASHSLYLEVEE 497 (497)
T ss_pred HHHHHHHHHhhhhcccC
Confidence 99999999999999986
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=1.1e-131 Score=1048.07 Aligned_cols=485 Identities=54% Similarity=0.905 Sum_probs=452.2
Q ss_pred CCcceeeeehhhHHHHHHHHHHHHhhhc-ccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 010895 1 MGKVTVAATVVCAAAVCAAAALVVRRRM-KSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (498)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~ 79 (498)
|+|+.++++++++++||+++ ++++||. +++.+|+++++++++|+++|.+|.++|++|+++|.+||++||+++.+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 80 (490)
T PLN02596 2 MRKEVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLN 80 (490)
T ss_pred CcceeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 78988888899988888777 8999988 666799999999999999999999999999999999999999875568999
Q ss_pred eeecccccCCCCccceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcC
Q 010895 80 MLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 80 MlPs~v~~~PtG~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
||||||+++|||+|+|.|||||||||||||++|+|.|++..+.+..+++|+||++++.+++++||||||+||++|+++++
T Consensus 81 MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 81 MLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred eecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999887554566666789999999999999999999999999999876
Q ss_pred CCCCCCCCCcceeeeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccc
Q 010895 160 EGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR 239 (498)
Q Consensus 160 ~~~~~~~~~~~~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~a 239 (498)
.+.....++.+|||||||||++|+++++|+|++| |||++++++|+||+++|+++++|+|+||+|+||+|||||||++++
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~a 239 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGR 239 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhh
Confidence 5432222357999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccc
Q 010895 240 YHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIIS 319 (498)
Q Consensus 240 y~~~~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~S 319 (498)
|.+++|.||+|+|||||+||+|+.++|+|+++..+..++||||||||+|+...+|+|+||+.||++|.|||+|+||||+|
T Consensus 240 Y~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiS 319 (490)
T PLN02596 240 YYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTS 319 (490)
T ss_pred cCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHh
Confidence 99999999999999999999999999999987656678999999999998778999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHH
Q 010895 320 GMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELC 399 (498)
Q Consensus 320 G~YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia 399 (498)
|||||||+|++|+++++++.||++..|+.|.+||+|+|++||.|+.|++++++.+.++|++.|+++.++.+|++++|+||
T Consensus 320 G~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~i~ 399 (490)
T PLN02596 320 GMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAEVC 399 (490)
T ss_pred hhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhH
Q 010895 400 DIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSG 479 (498)
Q Consensus 400 ~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~ 479 (498)
++|.+|||+|+||+|+||++++++. ..++++||||||||++||.|+++++++++++++++...+|.+.+++||||
T Consensus 400 ~~V~~RAArL~Aa~iaail~k~g~~-----~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~s~DGSG 474 (490)
T PLN02596 400 DIVAERGARLAGAGIVGIIKKLGRI-----ENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSHGGSG 474 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----CCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEEccCchh
Confidence 9999999999999999999999863 12468999999999999999999999999999877677899999999999
Q ss_pred HHHHHHHHHhccc
Q 010895 480 IGAALLAASHSQY 492 (498)
Q Consensus 480 iGAAi~Aa~~~~~ 492 (498)
+|||++||+.++-
T Consensus 475 ~GAAl~AA~~~~~ 487 (490)
T PLN02596 475 AGALFLAACQTGE 487 (490)
T ss_pred HHHHHHHHhhccC
Confidence 9999999998864
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=1.8e-131 Score=1051.96 Aligned_cols=493 Identities=60% Similarity=0.976 Sum_probs=454.6
Q ss_pred CCcceeeeehhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcce
Q 010895 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (498)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~M 80 (498)
|+|+.+++++++++++|++++.+++|++++..+|+++++++++++++|.+|.++|++|+++|++||++||+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (509)
T PLN02362 1 MGKVAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKM 80 (509)
T ss_pred CCceeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCce
Confidence 88988888888888888888889999988877888999999999999999999999999999999999999865689999
Q ss_pred eecccccCCCCccceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCC
Q 010895 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (498)
Q Consensus 81 lPs~v~~~PtG~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (498)
|||||+++|||+|+|.|||||||||||||++|+|.|++.....+++++|+||++++.+++++||||||+||.+|+++++.
T Consensus 81 lPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~ 160 (509)
T PLN02362 81 LLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEEN 160 (509)
T ss_pred ecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999998876555545556799999999999999999999999999998765
Q ss_pred CCCCCCCCcceeeeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccc
Q 010895 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (498)
Q Consensus 161 ~~~~~~~~~~~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay 240 (498)
+...+..+.+|||||||||++|+++++|+|++|||||++++++|+||+++|+++|+|+++||+|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 161 GSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred cccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 32222235799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeecccc
Q 010895 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (498)
Q Consensus 241 ~~~~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG 320 (498)
.+++|.||+|+|||||+||+|+.++|+|+++..+..++|+||||||+|+++++|+|+||..||.+|.|||+|+||||+||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (509)
T PLN02362 241 HDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISG 320 (509)
T ss_pred CCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHHhh
Confidence 99999999999999999999999999999876556789999999999998889999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Q 010895 321 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCD 400 (498)
Q Consensus 321 ~YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~ 400 (498)
||||||+|++|+++++++.||+ ..|++|.+||+|+|++||.|+.|++++++.+..+|++.++++..+.+|++++++||+
T Consensus 321 ~YLGEivRlvL~~l~~~~~lF~-~~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i~~ 399 (509)
T PLN02362 321 MYLGDIVRRVILRMSQESDIFG-PVSSRLSTPFVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKICD 399 (509)
T ss_pred ccHHHHHHHHHHHHHhcccccc-CCcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999997 478899999999999999999999999999999999999998789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCC----------CCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEE
Q 010895 401 IVATRGARLSAAGIVGILKKLGRDTVRD----------GEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVV 470 (498)
Q Consensus 401 ~V~~RaA~l~Aa~iaai~~~~~~~~~~~----------~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~ 470 (498)
+|.+|||+|+||+|+||+++++...... .+.++++||||||||++||.|+++++++++++++++...+|.
T Consensus 400 ~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~ 479 (509)
T PLN02362 400 VVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVI 479 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEE
Confidence 9999999999999999999998421100 012368999999999999999999999999999887777899
Q ss_pred EEEcCChhHHHHHHHHHHhccccc
Q 010895 471 IEHSNDGSGIGAALLAASHSQYLE 494 (498)
Q Consensus 471 l~~~~Dgs~iGAAi~Aa~~~~~~~ 494 (498)
+.+++||||+|||++||++++|.+
T Consensus 480 i~~a~DGSgvGAAl~AA~~~~~~~ 503 (509)
T PLN02362 480 LKATEDGSGIGSALLAASYSSYSV 503 (509)
T ss_pred EEEccCchHHHHHHHHHHHHhhhh
Confidence 999999999999999999999865
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=4.5e-129 Score=1028.09 Aligned_cols=481 Identities=58% Similarity=0.955 Sum_probs=441.5
Q ss_pred hhhHHHHHHHHHHHHhhhcccc------hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeec
Q 010895 10 VVCAAAVCAAAALVVRRRMKST------GRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLIS 83 (498)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs 83 (498)
+++++++.+++.++.+++.+.+ ...+++.+++++++++|.+|.++|++|+++|.+||++||++++.|+++||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpT 83 (490)
T PLN02914 4 SPVVTPAIGSFTFSSRPRRRPRSRMAVRSNAVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILS 83 (490)
T ss_pred CcccccCccceEEecCcccCccHHHHHHHhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceecc
Confidence 6778888888888888775443 3444788999999999999999999999999999999999865688999999
Q ss_pred ccccCCCCccceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCC
Q 010895 84 YVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFH 163 (498)
Q Consensus 84 ~v~~~PtG~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~ 163 (498)
||+++|+|+|+|.|||||||||||||++|+|.|++.++..+.+++++||++++.+++++||||||+||.+|+++++.+..
T Consensus 84 yv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~ 163 (490)
T PLN02914 84 YVDSLPSGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFH 163 (490)
T ss_pred ccCCCCCCCeeeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999998865556666667899999999999999999999999999998764322
Q ss_pred CCCCCcceeeeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccccCC
Q 010895 164 VSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK 243 (498)
Q Consensus 164 ~~~~~~~~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~~ 243 (498)
.+.++.+|||||||||++|+++++|+|++|||||++++++|+||+++|++||+|+++||+|+||+|||||||++++|.++
T Consensus 164 ~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~ 243 (490)
T PLN02914 164 LPEGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD 243 (490)
T ss_pred CCccccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC
Confidence 22345799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccH
Q 010895 244 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYL 323 (498)
Q Consensus 244 ~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YL 323 (498)
+|.||+|+|||||+||+|+.++|+|+++..+..++|+||||||+|+ +.+|+|+||+.+|++|.|||+|+||||+||+||
T Consensus 244 ~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YL 322 (490)
T PLN02914 244 DVMVAVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYL 322 (490)
T ss_pred CceEEEEEECCeeeEEEeecccccccccCCCCCceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhH
Confidence 9999999999999999999999999987655678999999999996 579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHH
Q 010895 324 GEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVA 403 (498)
Q Consensus 324 gEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~ 403 (498)
|||+|++|+++++++.||++..|+.|.+||+|+|++||+|+.|+++++..+..+|++.+++. ++.+|++++|+||++|+
T Consensus 323 GEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~~~~~-~~~~d~~~vr~i~~~V~ 401 (490)
T PLN02914 323 GEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQAVGSILYDVLGVE-ASLSARRRVVEVCDTIV 401 (490)
T ss_pred HHHHHHHHHHHHHhcccccCCCcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999984 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHH
Q 010895 404 TRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAA 483 (498)
Q Consensus 404 ~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAA 483 (498)
+|||+|+||+|+||+++++.........++++||||||||++||.|+++++++++++++++..++|++++++||||+|||
T Consensus 402 ~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~DGSGvGAA 481 (490)
T PLN02914 402 KRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAA 481 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccCchHHHHH
Confidence 99999999999999999986311101124689999999999999999999999999998876778999999999999999
Q ss_pred HHHHHhccc
Q 010895 484 LLAASHSQY 492 (498)
Q Consensus 484 i~Aa~~~~~ 492 (498)
++||++++|
T Consensus 482 l~AA~~s~~ 490 (490)
T PLN02914 482 LLAATNSKY 490 (490)
T ss_pred HHHHHhhcC
Confidence 999999876
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-118 Score=930.06 Aligned_cols=449 Identities=47% Similarity=0.715 Sum_probs=417.7
Q ss_pred chhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC-CCcceeecccccCCCCccceeEEEEEeCCceEEE
Q 010895 31 TGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG-SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRV 109 (498)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~-s~l~MlPs~v~~~PtG~E~G~~LaiDlGGTnlRv 109 (498)
+.+++.+..+++++++.|.+|.++|++++++|++||++||+.... +.++||||||.++|+|+|+|.|||||||||||||
T Consensus 21 ~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv 100 (474)
T KOG1369|consen 21 ASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRV 100 (474)
T ss_pred hhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCCceEE
Confidence 357788999999999999999999999999999999999996543 3399999999999999999999999999999999
Q ss_pred EEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEeeeeeeeccCCceE
Q 010895 110 LRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGD 189 (498)
Q Consensus 110 ~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFSfP~~q~~i~~g~ 189 (498)
++|.++|++. .+.+.+++|.||.+++++++++|||||++|+.+|+++++... . ..+|+||||||||+|+++++|+
T Consensus 101 ~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~---~-~~l~lgFTFSfP~~Q~si~~g~ 175 (474)
T KOG1369|consen 101 LLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG---A-SKLPLGFTFSFPCRQTSIDKGT 175 (474)
T ss_pred EEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc---c-cccccceEEeeeeeecccccce
Confidence 9999988755 555666789999999999999999999999999999987641 1 1299999999999999999999
Q ss_pred EEccCCccccCCCCCCcHHHHHHHHHHHcCCC-eeEEEEEechHHHHhcccccCCCcEEEEEEccCceeeEEcccCcccc
Q 010895 190 LIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPK 268 (498)
Q Consensus 190 Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~-v~vvaivNDTvatlla~ay~~~~~~iglIlGTGtNa~yie~~~~i~k 268 (498)
|++|||||++++++|+||+.+|+++|+|++++ +.|+|++|||||||++++|.+++|.||+|+|||||+||+|+.++|+|
T Consensus 176 L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k 255 (474)
T KOG1369|consen 176 LIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEK 255 (474)
T ss_pred EEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhh
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEeccCCCcCCC--CCCCccccccccccCCCCCcceeeeccccccHHHHHHHHHHHHHhccCCCCCCCC
Q 010895 269 WHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVP 346 (498)
Q Consensus 269 ~~~~~~~~~~miIN~EwG~f~~~--~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il~~~~~~~~lF~~~~~ 346 (498)
+++..... +||||||||+|+++ .+|+|+||..+|.+|+|||+|.||||+||||||||+|++|+++.+++.||++..
T Consensus 256 ~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~~- 333 (474)
T KOG1369|consen 256 VEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQS- 333 (474)
T ss_pred cccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhcccc-
Confidence 99865544 89999999999954 589999999999999999999999999999999999999999999999999887
Q ss_pred CCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 010895 347 PKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTV 426 (498)
Q Consensus 347 ~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~ 426 (498)
+.| +|+.|+|+++|+|++|.++++..+.. +.+.++++..+.+|++.++++|+.|++|||+|+||+|+||+++++..
T Consensus 334 ~~l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~-- 409 (474)
T KOG1369|consen 334 TKL-TPFIFETKYVSAIEEDDTGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGEL-- 409 (474)
T ss_pred ccc-CcceeccchHHhHhcCCchHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc--
Confidence 777 99999999999999999999999888 66669998899999999999999999999999999999999999852
Q ss_pred CCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhcccccc
Q 010895 427 RDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLEV 495 (498)
Q Consensus 427 ~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~~~~~~ 495 (498)
...+++||+|||+|++||.|++++++++++++++ ...|.+.+++||||+|||++||+++++++.
T Consensus 410 ---~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~--~~~v~i~~s~dgSg~GAAL~Aav~~~~~~~ 473 (474)
T KOG1369|consen 410 ---SRKRVTVGVDGSLYKNHPFFREYLKEALRELLGP--SIHVKLVLSEDGSGRGAALIAAVASRLKQE 473 (474)
T ss_pred ---ccCceEEEeccchhHcCchHHHHHHHHHHHHhCC--CceEEEEECCCCccccHHHHHHHHhhhhcc
Confidence 2357899999999999999999999999999983 468999999999999999999999998865
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=2.3e-116 Score=930.24 Aligned_cols=430 Identities=35% Similarity=0.554 Sum_probs=391.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC---------CCCCcceeecccccCCCCccceeEEEEEeCCceE
Q 010895 37 AVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE---------GGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNF 107 (498)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~---------~~s~l~MlPs~v~~~PtG~E~G~~LaiDlGGTnl 107 (498)
.++.+++++++|.+|.++|++|+++|++||++||+++ ++|+++||||||+++|+|+|+|.|||||||||||
T Consensus 7 ~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN~ 86 (464)
T PTZ00107 7 QRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTNF 86 (464)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCceE
Confidence 4566788888889999999999999999999999875 2588999999999999999999999999999999
Q ss_pred EEEEEEeCCCcceeEEEeeeeeecCCCcccc---------ChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEeee
Q 010895 108 RVLRVQLGGREGRVVKQEFEEVSIPPHLMTG---------SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (498)
Q Consensus 108 Rv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~---------~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFSf 178 (498)
||++|+|.|++. ....++++.||++++.+ ++++||||||+||.+|+++++... ...+.+||||||||
T Consensus 87 RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTFSF 162 (464)
T PTZ00107 87 RAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTFSF 162 (464)
T ss_pred EEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEEee
Confidence 999999987643 32344579999998888 899999999999999999876211 12357999999999
Q ss_pred eeeeccCCceEEEccCCcccc-----CCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccccC----CCcEEEE
Q 010895 179 PVRQTSIASGDLIKWTKGFSI-----EDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAAV 249 (498)
Q Consensus 179 P~~q~~i~~g~Li~wtKgF~~-----~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~----~~~~igl 249 (498)
|++|+++++|+|++|||||++ ++++|+||+++|++||+|+++||+|+||+|||||||++++|.+ ++|.||+
T Consensus 163 P~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGl 242 (464)
T PTZ00107 163 PCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGV 242 (464)
T ss_pred eeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEE
Confidence 999999999999999999999 9999999999999999999999999999999999999999999 9999999
Q ss_pred EEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHH
Q 010895 250 ILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRR 329 (498)
Q Consensus 250 IlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~ 329 (498)
|+|||||+||+|+.... +..++|+||||||+|| +.+|+|+||+.+|+.|.|||+|+||||+||+|||||+|+
T Consensus 243 IlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~-~~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rl 314 (464)
T PTZ00107 243 IIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFD-SKLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRR 314 (464)
T ss_pred EEeccccceeeehhhcc-------CCCCcEEEEeeccccC-CCCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHH
Confidence 99999999999964321 2345799999999997 459999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010895 330 VLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARL 409 (498)
Q Consensus 330 il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l 409 (498)
+|+++++++ .|+.|.++|+|+|++||.|+.|.+++++.++.+|++.+++. ++.+|++++|+||++|++|||+|
T Consensus 315 vl~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA~L 387 (464)
T PTZ00107 315 LIVHLLQLK------APPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAAQL 387 (464)
T ss_pred HHHHHHhcC------CchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 999997753 57789999999999999999999999999999999988885 78899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHh
Q 010895 410 SAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASH 489 (498)
Q Consensus 410 ~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~ 489 (498)
+||+|+||+++++... ++++||+|||+|++||.|+++++++++++++++ .++|++.+++||||+|||++||++
T Consensus 388 ~Aa~iaail~k~~~~~------~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~-~~~v~l~~a~DGSg~GAAl~AA~~ 460 (464)
T PTZ00107 388 AAAFIAAPAKKTRTVQ------GKATVAIDGSVYVKNPWFRRLLQEYINSILGPD-AGNVVFYLADDGSGKGAAIIAAMV 460 (464)
T ss_pred HHHHHHHHHHHhCCCC------CceEEEEeCcceecCccHHHHHHHHHHHHhCCC-CCcEEEEEccCchHHHHHHHHHHh
Confidence 9999999999998621 478999999999999999999999999999876 568999999999999999999998
Q ss_pred ccc
Q 010895 490 SQY 492 (498)
Q Consensus 490 ~~~ 492 (498)
++.
T Consensus 461 ~~~ 463 (464)
T PTZ00107 461 AND 463 (464)
T ss_pred ccC
Confidence 765
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-102 Score=789.01 Aligned_cols=450 Identities=40% Similarity=0.623 Sum_probs=414.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCccceeEEEEEeCCceEEEEE
Q 010895 32 GRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLR 111 (498)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~MlPs~v~~~PtG~E~G~~LaiDlGGTnlRv~~ 111 (498)
.-|+.+++.+.++++.|.+|.|+|.++.++|.+||++||+...+..++|+|+||...|+|+|.|.||+||+||||||||+
T Consensus 12 ~~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~ 91 (466)
T COG5026 12 GVEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCL 91 (466)
T ss_pred cccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEE
Confidence 35888999999999999999999999999999999999994433449999999999999999999999999999999999
Q ss_pred EEeCCCcceeEEEeeeeeecCCCcccc-ChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEeeeeeeeccCCceEE
Q 010895 112 VQLGGREGRVVKQEFEEVSIPPHLMTG-SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDL 190 (498)
Q Consensus 112 V~l~g~~~~~~~~~~~~~~ip~~~~~~-~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFSfP~~q~~i~~g~L 190 (498)
|+++|++...+. ++ ++.+|.+.... +.+++|++||++++.|++++..+. ..+++++|||||||++|+++++|.|
T Consensus 92 V~l~g~gt~~~~-~s-ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l 166 (466)
T COG5026 92 VVLGGDGTFDIE-QS-KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQL 166 (466)
T ss_pred EEeCCCCCcccc-cC-cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceee
Confidence 999887654333 23 45599998865 789999999999999999987643 3568999999999999999999999
Q ss_pred EccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccccCCCcEEEEEEccCceeeEEcccCcccccc
Q 010895 191 IKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWH 270 (498)
Q Consensus 191 i~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~~~~~iglIlGTGtNa~yie~~~~i~k~~ 270 (498)
++|||||++++++|+||+++|+++|+++++||+|+||+|||+||+||+.|.++++.||+|+|||||+||+|+...|||++
T Consensus 167 ~rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~ 246 (466)
T COG5026 167 IRWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLP 246 (466)
T ss_pred EeecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCCcEEEeccCCCcCCCC--CCCccccccccccCCCCCcceeeeccccccHHHHHHHHHHHHHhccCCCCCCCCC
Q 010895 271 GL-LPKSGEMVINMEWGNFRSSH--LPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPP 347 (498)
Q Consensus 271 ~~-~~~~~~miIN~EwG~f~~~~--lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il~~~~~~~~lF~~~~~~ 347 (498)
.. .++.++|+||+|||.|++.. ||+|+||..+|+.|++||.|.||||+||+||||++|++|.++..++.+|.++.|+
T Consensus 247 ~d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~ 326 (466)
T COG5026 247 RDDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPE 326 (466)
T ss_pred cccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchh
Confidence 53 35677899999999999765 9999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Q 010895 348 KLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVR 427 (498)
Q Consensus 348 ~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~ 427 (498)
++..|+.++|+.+|.++.|++++++++...+.+.|+.+ .+.++++.++.+|++|++|||+|+|+.|+||+.+.+..
T Consensus 327 ~~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~~-tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~--- 402 (466)
T COG5026 327 KLTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRAP-TTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAY--- 402 (466)
T ss_pred hcccceeeecchhhhhccccccccchhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCC---
Confidence 99999999999999999999999999999999889985 88899999999999999999999999999999999952
Q ss_pred CCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhcccccc
Q 010895 428 DGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLEV 495 (498)
Q Consensus 428 ~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~~~~~~ 495 (498)
++..|+.||++|++||.|++++.+++++++++... +|.+++.+|||++|||++|+.+.+.+.+
T Consensus 403 ----k~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~-~i~i~~a~dgsglGAAl~a~~~~k~~~~ 465 (466)
T COG5026 403 ----KAYHVGADGSVIERYPGFRSMLREALKALLGEEGE-KIKIKPAEDGSGLGAALCALLAQKPKAV 465 (466)
T ss_pred ----ccceeeeecchhhhchhHHHHHHHHHHHhhcccCc-eeeEEecccCcchHHHHHHHHhcccccc
Confidence 35569999999999999999999999999985544 8999999999999999999888776543
No 8
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=1.4e-64 Score=498.59 Aligned_cols=241 Identities=43% Similarity=0.718 Sum_probs=214.2
Q ss_pred CcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCC--CCCCccccccccccCCCCCcceeeeccccc
Q 010895 244 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGM 321 (498)
Q Consensus 244 ~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~--~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~ 321 (498)
+|.||+|+|||||+||+|+.++|+|+++ ..++||||||||+|++. .+|+|+||+.+|+.|+|||+|+||||+||+
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999988 67889999999999653 379999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Q 010895 322 YLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDI 401 (498)
Q Consensus 322 YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~ 401 (498)
|||||+|++|+++++++.||.+..|+.|.++|+|+|++||.|++|+++++..++.+|.+.+++. ++.+|++++|+||++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998999999999999989985 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHH
Q 010895 402 VATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIG 481 (498)
Q Consensus 402 V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iG 481 (498)
|++|||+|+|++|+||+++++.... .+.++++||+|||+|++||.|++++++++++++++. ..+|+|++++|||++|
T Consensus 157 V~~RAA~L~Aa~iaail~~~~~~~~--~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~-~~~v~~~~~~dgsg~G 233 (243)
T PF03727_consen 157 VSTRAARLVAAAIAAILNKIRENKG--RPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEE-GCKVEFVLSEDGSGVG 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT--CSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT--CEEEEEEE-SSTHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhhhcccc--ccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccc-cceEEEEEecCchHHH
Confidence 9999999999999999999643211 223589999999999999999999999999998875 5689999999999999
Q ss_pred HHHHHHHhcc
Q 010895 482 AALLAASHSQ 491 (498)
Q Consensus 482 AAi~Aa~~~~ 491 (498)
||++||+++|
T Consensus 234 AAi~AA~a~r 243 (243)
T PF03727_consen 234 AAIAAAVACR 243 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 9
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=2.3e-57 Score=435.45 Aligned_cols=202 Identities=48% Similarity=0.753 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC--CCcceeecccccCCCCccceeEEEEEeCCceEEEEEEE
Q 010895 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG--SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (498)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~--s~l~MlPs~v~~~PtG~E~G~~LaiDlGGTnlRv~~V~ 113 (498)
++++.++++.+.|.+|.++|++|+++|++||+.||+++.+ ++++||||||+++|+|+|+|.|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 4678888888999999999999999999999999998652 24999999999999999999999999999999999999
Q ss_pred eCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEeeeeeeeccCCceEEEcc
Q 010895 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (498)
Q Consensus 114 l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFSfP~~q~~i~~g~Li~w 193 (498)
|.|++ .++..+++|+||.+++.+++++||||||+||.+|+++++.. +.++.+|||||||||++|+++++|+|++|
T Consensus 82 L~g~~--~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNG--KVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSS--EEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCC--CceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 98875 33334468999999999999999999999999999988652 13578999999999999999999999999
Q ss_pred CCccccCCCCCCcHHHHHHHHHHHcCCC-eeEEEEEechHHHHhcccccC
Q 010895 194 TKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHN 242 (498)
Q Consensus 194 tKgF~~~~~~G~dv~~lL~~al~~~~l~-v~vvaivNDTvatlla~ay~~ 242 (498)
||||++++++|+|++++|+++|+|++++ |+|+||+||||||||+++|.|
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999998 999999999999999999975
No 10
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.91 E-value=1.9e-22 Score=204.92 Aligned_cols=291 Identities=19% Similarity=0.206 Sum_probs=209.9
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEe
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftF 176 (498)
+++||+|||++|+++++++|+ ++... .++.|. .+.+++.+.|++.+.++..+.+. ...+|+++
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~--------~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFGC--------KGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcCC--------cceEEEeC
Confidence 799999999999999999775 55432 344442 34678999999999888654321 24699999
Q ss_pred eeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc----CCCcEEEEEEc
Q 010895 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILG 252 (498)
Q Consensus 177 SfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~----~~~~~iglIlG 252 (498)
+.|++. +.|.+ .++ +.+++.+.|+.+.|++.+ ++| +.+.||+++..+++.|. +.+..+++.+|
T Consensus 65 pG~vd~---~~g~~-~~~---~~~~w~~~~l~~~l~~~~---~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~g 131 (303)
T PRK13310 65 PGMPET---EDGTL-YAA---NVPAASGKPLRADLSARL---GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILG 131 (303)
T ss_pred CCcccC---CCCEE-ecc---CcccccCCcHHHHHHHHH---CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEEec
Confidence 999964 34554 333 466778899999999998 898 58999999999999873 56899999999
Q ss_pred cCceeeEEcccCccccccCCCCCCCcEEEeccCC-CcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHHHH
Q 010895 253 TGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWG-NFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVL 331 (498)
Q Consensus 253 TGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG-~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il 331 (498)
||++++++.+.+.+.+.++.+++.+||.|+.... .+|.+. | ...-.|++ ..|+|.++|+..|.+..|...
T Consensus 132 tGiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~-~------~~~C~CG~--~gclE~~~S~~al~~~~~~~~ 202 (303)
T PRK13310 132 TGVGGGLVFNGKPISGRSYITGEFGHMRLPVDALTLLGWDA-P------LRRCGCGQ--KGCIENYLSGRGFEWLYQHYY 202 (303)
T ss_pred CceEEEEEECCEEeeCCCCccccccceeecccccccccccC-C------CccCCCCC--cchHHHhhcHHHHHHHHHHhc
Confidence 9999999999999999988888999999964310 001000 0 00012555 459999999998865444210
Q ss_pred HHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 010895 332 CRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSA 411 (498)
Q Consensus 332 ~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~A 411 (498)
+ .+ + ...++++. ++..+..|..+++++++++|
T Consensus 203 -----------~-------~~--~-----------------~~~~l~~~-----------~~~gd~~a~~~~~~~~~~la 234 (303)
T PRK13310 203 -----------G-------EP--L-----------------QAPEIIAL-----------YYQGDEQAVAHVERYLDLLA 234 (303)
T ss_pred -----------c-------CC--C-----------------CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHH
Confidence 0 00 0 11222222 22233678889999999999
Q ss_pred HHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEE---EcCChhHHHHHHHH
Q 010895 412 AGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE---HSNDGSGIGAALLA 486 (498)
Q Consensus 412 a~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~---~~~Dgs~iGAAi~A 486 (498)
.+|+++++.++| + .|.++|++.+ .|.|.+.+++.+++...+.. ..+.|. +.+|++.+|||.++
T Consensus 235 ~~l~n~~~~ldP--------~--~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 235 ICLGNILTIVDP--------H--LVVLGGGLSN-FDAIYEQLPKRLPRHLLPVA-RVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHcCC--------C--EEEECCcccC-hHHHHHHHHHHHHHHhcccc-cCceEEEcccCchHHHHhHHHHh
Confidence 999999999998 3 4678999887 78899999999987654322 234454 47788999999876
No 11
>PRK09698 D-allose kinase; Provisional
Probab=99.91 E-value=1.8e-22 Score=204.77 Aligned_cols=285 Identities=18% Similarity=0.183 Sum_probs=209.4
Q ss_pred ceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceee
Q 010895 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (498)
.+++++||+|||++|+++++++|+ ++... .++.|.. .+.+ .++.+++.|.+++++.+ .+...+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~-------~~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHCE--KKRTAEV---IAPD-LVSGLGEMIDEYLRRFN-------ARCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEEE--EeCCccc---cchH-HHHHHHHHHHHHHHHcC-------CCeeEEE
Confidence 468999999999999999999875 55332 3444322 2334 49999999999998753 1357899
Q ss_pred eEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc---CCCcEEEEE
Q 010895 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (498)
Q Consensus 174 ftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~---~~~~~iglI 250 (498)
+.+++|++. +.+.++. +..+..+++.+.|+.+.|++.+ ++| +.+.||+.+..+++.+. ++++.+.+.
T Consensus 67 ia~pG~vd~---~~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSK---DRRTVIS-TPNLPLTALDLYDLADKLENTL---NCP---VFFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeC---CCCEEEe-cCCCCccccccCCHHHHHHHHh---CCC---EEEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 999999974 3455443 3323333678899999999998 899 58999999999988642 456899999
Q ss_pred EccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHHH
Q 010895 251 LGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRV 330 (498)
Q Consensus 251 lGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~i 330 (498)
+|||.+++++.+.+.+.+.++.+++.+||.++.+...|. |+++| |+|.++|+..|-+..+..
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~~~~~~C~----------------CG~~g--clE~~~S~~al~~~~~~~ 198 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCG----------------CGNPG--CLETNCSGMALRRWYEQQ 198 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEeeCCCcccC----------------CCCcc--chHhhcCHHHHHHHHHHh
Confidence 999999999999999999888888999999986655564 67765 999999998875433210
Q ss_pred HHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 010895 331 LCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLS 410 (498)
Q Consensus 331 l~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~ 410 (498)
+. + . ....+++. .+ + ..+.+++++++
T Consensus 199 ----------~~---~------~-------------------~~~~l~~~-~~----~-----------~~~~~~~~~~l 224 (302)
T PRK09698 199 ----------PR---D------Y-------------------PLSDLFVH-AG----D-----------HPFIQSLLENL 224 (302)
T ss_pred ----------cC---C------C-------------------CHHHHHHH-cC----C-----------HHHHHHHHHHH
Confidence 00 0 0 01122222 11 1 02567888999
Q ss_pred HHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcC-CCccEEEEE---cCChhHHHHHHHH
Q 010895 411 AAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEE-VSETVVIEH---SNDGSGIGAALLA 486 (498)
Q Consensus 411 Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~-~~~~i~l~~---~~Dgs~iGAAi~A 486 (498)
|.+|+.+++.++| + .|.++|++.+..+.|.+.+++.+++.+... ....+.|.. .+|++.+|||.++
T Consensus 225 a~~l~~li~~ldP--------~--~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~ 294 (302)
T PRK09698 225 ARAIATSINLFDP--------D--AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILA 294 (302)
T ss_pred HHHHHHHHHHhCC--------C--EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHH
Confidence 9999999999998 3 477899999988888999999998876421 123454543 6788899999875
No 12
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.91 E-value=2.6e-22 Score=204.86 Aligned_cols=301 Identities=18% Similarity=0.179 Sum_probs=216.0
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEee
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFS 177 (498)
|+||+|||++|++++++.|+ ++... .++.+ .+.+++++.|.+.|.+|+++.+.. ..+...+|++++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKV----GHEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCC----ccceEEEEEecc
Confidence 58999999999999999875 55332 23332 246789999999999999876532 234678889999
Q ss_pred eeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc----CCCcEEEEEEcc
Q 010895 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGT 253 (498)
Q Consensus 178 fP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~----~~~~~iglIlGT 253 (498)
.|++. .+|.+. |.- ..+|.+.|+.+.|++.+ ++| +.+.||+.+..+++.|. +.+..+.+.+||
T Consensus 67 G~vd~---~~g~~~-~~~---~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igt 133 (318)
T TIGR00744 67 GPVNR---QRGTVY-FAV---NLDWKQEPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITLGT 133 (318)
T ss_pred ccccC---CCCEEE-ecC---CCCCCCCCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEeCC
Confidence 99964 234432 331 22456689999999988 888 58999999999998763 568899999999
Q ss_pred CceeeEEcccCccccccCCCCCCCcEEEeccC-CCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHHHHH
Q 010895 254 GTNAAYVERAHAIPKWHGLLPKSGEMVINMEW-GNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLC 332 (498)
Q Consensus 254 GtNa~yie~~~~i~k~~~~~~~~~~miIN~Ew-G~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il~ 332 (498)
|++++++.+.+.+.+.++.+++.+||+++.+. ..|. |++ .+|+|.++|+..|-+..+....
T Consensus 134 GiG~giv~~G~~~~G~~g~agEiGh~~v~~~g~~~C~----------------cG~--~gclE~~~s~~al~~~~~~~~~ 195 (318)
T TIGR00744 134 GLGGGIIINGEIRHGHNGVGAEIGHIRMVPDGRLLCN----------------CGK--QGCIETYASATGLVRYAKRANA 195 (318)
T ss_pred ccEEEEEECCEEeecCCCCCcccCceEeCCCCCcccC----------------CCC--cchHHHHhCHHHHHHHHHHHhc
Confidence 99999999999999988888899999997654 3443 666 4599999999988664443211
Q ss_pred HHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 010895 333 RMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAA 412 (498)
Q Consensus 333 ~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~Aa 412 (498)
.. ..++.+. ....+. . .....+++. ++..+..|..+++++++++|.
T Consensus 196 ~~---------~~~~~~~-----------~~~~~~--~-~~~~~i~~~-----------~~~gD~~a~~i~~~~~~~L~~ 241 (318)
T TIGR00744 196 KP---------ERAEVLL-----------ALGDGD--G-ISAKHVFVA-----------ARQGDPVAVDSYREVARWAGA 241 (318)
T ss_pred cc---------cccchhh-----------cccccC--C-CCHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHH
Confidence 00 0001110 000000 0 012333333 223347888999999999999
Q ss_pred HHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEE---EcCChhHHHHHHHHH
Q 010895 413 GIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE---HSNDGSGIGAALLAA 487 (498)
Q Consensus 413 ~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~---~~~Dgs~iGAAi~Aa 487 (498)
+|+++++.++| + .|.++|++.+..+.|.+.+++.+++...+.....+.+. +.++++.+|||..+.
T Consensus 242 ~i~~~~~~~dP--------~--~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 242 GLADLASLFNP--------S--AIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred HHHHHHHHhCC--------C--EEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 99999999988 3 47789999999999999999999876543222334444 367888999997753
No 13
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.89 E-value=3.7e-21 Score=196.27 Aligned_cols=295 Identities=21% Similarity=0.264 Sum_probs=217.1
Q ss_pred cceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCccee
Q 010895 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (498)
Q Consensus 93 E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (498)
+...+++||+|||+++++++++.|+ +... +..+.|... ..+++.+.|.+.++++++.+. . ....+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~~--~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILLR--ERIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEEE--EEEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4568999999999999999999886 4433 234444432 225789999999999988763 1 13567
Q ss_pred eeEeeeeeeeccCCceE-EEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc----CCCcEE
Q 010895 173 GFTFSFPVRQTSIASGD-LIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIA 247 (498)
Q Consensus 173 GftFSfP~~q~~i~~g~-Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~----~~~~~i 247 (498)
|+.++.|.... ++. +..+. +...+.+.|+.+.|++.+ ++| |.+.||+++..++++|. +.+..+
T Consensus 69 GIgi~~pg~~~---~~~~~~~~~---~~~~~~~~~l~~~L~~~~---~~P---v~veNDan~aalaE~~~g~~~~~~~~~ 136 (314)
T COG1940 69 GIGIPGPGDVD---NGTVIVPAP---NLGWWNGVDLAEELEARL---GLP---VFVENDANAAALAEAWFGAGRGIDDVV 136 (314)
T ss_pred EEEeccceecc---CCcEEeecC---CCCccccccHHHHHHHHH---CCC---EEEecHHHHHHHHHHHhCCCCCCCCEE
Confidence 77777777532 332 33333 344455688999999999 899 58999999999999984 468999
Q ss_pred EEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHH
Q 010895 248 AVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIV 327 (498)
Q Consensus 248 glIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~ 327 (498)
.+++|||++++++.+.+.+.+.++.+++.+||+++..+. |+ |++.| |+|.++|+..|-+..
T Consensus 137 ~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~-c~----------------cG~~G--clE~~as~~al~~~~ 197 (314)
T COG1940 137 YITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE-CG----------------CGRRG--CLETYASGRAILRRA 197 (314)
T ss_pred EEEEccceeEEEEECCEEeecCCCccccccceEECCCCc-cC----------------CCCCC--chHHhccHHHHHHHH
Confidence 999999999999999999999988888899999998777 64 67755 999999999997654
Q ss_pred HHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHH
Q 010895 328 RRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGA 407 (498)
Q Consensus 328 R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA 407 (498)
... .+.... . ...+.+++. +...+..+..++++++
T Consensus 198 ---~~~-----------~~~~~~-------------------~-~~~~~i~~~-----------a~~gd~~a~~~~~~~~ 232 (314)
T COG1940 198 ---AEA-----------LESEAG-------------------E-LTAKDIFEL-----------AAAGDPLAKEVIERAA 232 (314)
T ss_pred ---Hhh-----------cccccc-------------------C-cCHHHHHHH-----------HHcCCHHHHHHHHHHH
Confidence 100 000000 0 123344443 3334478889999999
Q ss_pred HHHHHHHHHHHHHhCCCCcCCCCCceEEEEEec-eEecccHhHHHHHHHHHHHHhCcC-CCcc-EEEEEc-CChhHHHHH
Q 010895 408 RLSAAGIVGILKKLGRDTVRDGEKQKSVIALDG-GLFEHYTKFSACMQSTVKELLGEE-VSET-VVIEHS-NDGSGIGAA 483 (498)
Q Consensus 408 ~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idG-sv~~~~p~f~~~l~~~l~~l~~~~-~~~~-i~l~~~-~Dgs~iGAA 483 (498)
.++|.+|+++++.++| + .|.++| ++....+.+.+.+++.+....... .... +.-.+. ++.+.+|||
T Consensus 233 ~~la~~ianl~~~~~P--------~--~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~ 302 (314)
T COG1940 233 DYLARGLANLINLLDP--------E--VIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIGAA 302 (314)
T ss_pred HHHHHHHHHHHHhcCC--------C--eEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchhHH
Confidence 9999999999999998 3 466788 999899999999999888775431 1111 111234 899999999
Q ss_pred HHHHH
Q 010895 484 LLAAS 488 (498)
Q Consensus 484 i~Aa~ 488 (498)
..+.-
T Consensus 303 ~~~~~ 307 (314)
T COG1940 303 LLALL 307 (314)
T ss_pred HHHHH
Confidence 88753
No 14
>PRK09557 fructokinase; Reviewed
Probab=99.89 E-value=5.4e-21 Score=194.11 Aligned_cols=290 Identities=18% Similarity=0.212 Sum_probs=203.6
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEe
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftF 176 (498)
+|++|+|||++|+++++++|+ +..+. .++.|. .+.+++.+.|++.+.++..+.+ ....+|+++
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFRK--RLPTPR----DDYQQTIEAIATLVDMAEQATG--------QRGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHhhcC--------CceEEEecC
Confidence 799999999999999999775 55332 333332 2467888999988888875432 236799999
Q ss_pred eeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccc----cCCCcEEEEEEc
Q 010895 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVILG 252 (498)
Q Consensus 177 SfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay----~~~~~~iglIlG 252 (498)
+.|++. ++|.+..... ..+.+.|+.+.|++.+ ++| +.+.||+++..+++.+ ++++..+.+.+|
T Consensus 65 pG~vd~---~~g~i~~~~~----~~~~~~~l~~~l~~~~---~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig 131 (301)
T PRK09557 65 PGSISP---YTGLVKNANS----TWLNGQPLDKDLSARL---NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVIIG 131 (301)
T ss_pred cccCcC---CCCeEEecCC----ccccCCCHHHHHHHHH---CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEEEc
Confidence 999964 3454432221 1125688999999999 888 5899999999999976 356788999999
Q ss_pred cCceeeEEcccCccccccCCCCCCCcEEEecc-CCCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHHHH
Q 010895 253 TGTNAAYVERAHAIPKWHGLLPKSGEMVINME-WGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVL 331 (498)
Q Consensus 253 TGtNa~yie~~~~i~k~~~~~~~~~~miIN~E-wG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il 331 (498)
||++++++.+.+.+.+.++.+++.+||.|+.. -..++ |..-..-.|++ ..|+|.++|+..|-+..+...
T Consensus 132 tGiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~~--------~~~g~~c~cG~--~GclE~~~S~~al~~~~~~~~ 201 (301)
T PRK09557 132 TGCGAGVAINGRVHIGGNGIAGEWGHNPLPWMDEDELR--------YRNEVPCYCGK--QGCIETFISGTGFATDYRRLS 201 (301)
T ss_pred cceEEEEEECCEEEecCCCCCcccCceecccccccccc--------cCCCCcCCCCC--CCEEeEEEcHHHHHHHHHHhc
Confidence 99999999999999998888889999998530 00000 00000112556 459999999998865444210
Q ss_pred HHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 010895 332 CRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSA 411 (498)
Q Consensus 332 ~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~A 411 (498)
. .. + + ...+++. ++..+..++.+++++++++|
T Consensus 202 ------------~--~~------~--------------~---~~~l~~~-----------~~~gd~~a~~~l~~~~~~La 233 (301)
T PRK09557 202 ------------G--KA------L--------------K---GSEIIRL-----------VEEGDPVAELAFRRYEDRLA 233 (301)
T ss_pred ------------c--CC------C--------------C---HHHHHHH-----------HHcCCHHHHHHHHHHHHHHH
Confidence 0 00 0 1 1222322 22233678889999999999
Q ss_pred HHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEE---EcCChhHHHHHHHH
Q 010895 412 AGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE---HSNDGSGIGAALLA 486 (498)
Q Consensus 412 a~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~---~~~Dgs~iGAAi~A 486 (498)
.+|+++++.++| + .|.++|++... +.|.+.+++.+++...+... .+.++ +.+|++.+|||...
T Consensus 234 ~~l~~l~~~ldP--------~--~IvlgG~~~~~-~~~~~~l~~~~~~~~~~~~~-~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 234 KSLAHVINILDP--------D--VIVLGGGMSNV-DRLYPTLPALLKQYVFGGEC-ETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHhCC--------C--EEEEcCcccch-HHHHHHHHHHHHHHhccccc-CCeEEEcccCCchhhhhhhHhh
Confidence 999999999998 3 47789998874 77888899999876543211 34444 47888999998754
No 15
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.89 E-value=4.5e-21 Score=193.68 Aligned_cols=278 Identities=17% Similarity=0.162 Sum_probs=201.5
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEe
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftF 176 (498)
+|++|+|||++|+++++++|+ +.... .++.|.. .+.+++.+.|++.+.++..+ ...+|+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQRR--QIPTPAS---QTPEALRQALSALVSPLQAQ-----------ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEEE--EecCCCC---CCHHHHHHHHHHHHHHhhhc-----------CcEEEEeC
Confidence 799999999999999999875 55332 3444432 35677888888888877521 35699999
Q ss_pred eeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc---CCCcEEEEEEcc
Q 010895 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVILGT 253 (498)
Q Consensus 177 SfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~---~~~~~iglIlGT 253 (498)
++|++. +... +....+.++|.+.|+.+.|++.+ ++| +.+.||+++.++++.+. +.+..+.+.+||
T Consensus 64 pG~vd~-----~~~~-~~~~~~~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~ 131 (291)
T PRK05082 64 TGIIND-----GILT-ALNPHNLGGLLHFPLVQTLEQLT---DLP---TIALNDAQAAAWAEYQALPDDIRNMVFITVST 131 (291)
T ss_pred cccccC-----CeeE-EecCCCCccccCCChHHHHHHHh---CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 999962 2221 11111344567899999999988 888 58999999999999753 567899999999
Q ss_pred CceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHHHHHH
Q 010895 254 GTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCR 333 (498)
Q Consensus 254 GtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il~~ 333 (498)
|.+++++.+.+.+.+.++.+++.+||.|+.+...|. |+++| |+|.++|+..|-+..+.
T Consensus 132 GiG~giv~~G~~~~G~~g~AGEiGh~~v~~~g~~c~----------------CG~~G--clE~~~S~~al~~~~~~---- 189 (291)
T PRK05082 132 GVGGGIVLNGKLLTGPGGLAGHIGHTLADPHGPVCG----------------CGRRG--CVEAIASGRAIAAAAQG---- 189 (291)
T ss_pred CcceEEEECCEEeeCCCCccccccceEecCCCCCCC----------------CCCcC--chhhhcCHHHHHHHHHH----
Confidence 999999999999999888888999999976544443 67755 99999999988442111
Q ss_pred HHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010895 334 MAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAG 413 (498)
Q Consensus 334 ~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~Aa~ 413 (498)
. + +. . . ...+++. .+..+..|..+++++++++|.+
T Consensus 190 ~------~----~~-----~----------------~---~~~i~~~-----------~~~gd~~a~~~~~~~~~~la~~ 224 (291)
T PRK05082 190 W------L----AG-----C----------------D---AKTIFER-----------AGQGDEQAQALINRSAQAIARL 224 (291)
T ss_pred h------h----cC-----C----------------C---HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHH
Confidence 0 0 00 0 1 1122222 1112256778999999999999
Q ss_pred HHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEE---cCChhHHHHHHHH
Q 010895 414 IVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH---SNDGSGIGAALLA 486 (498)
Q Consensus 414 iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~---~~Dgs~iGAAi~A 486 (498)
|+++++.++| + .|.++|++.. .+.|.+.+++.++++... . .+.+.. .+|.+.+|||..+
T Consensus 225 l~~l~~~~dp--------e--~IvlgG~~~~-~~~~~~~i~~~l~~~~~~--~-~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 225 IADLKATLDC--------Q--CVVLGGSVGL-AEGYLELVQAYLAQEPAI--Y-HVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHhCC--------C--EEEEcCcccc-HHHHHHHHHHHHHhcccc--c-CCeEEECccCCchhhhhHHHHh
Confidence 9999999998 3 4778998764 677889999999875221 1 344543 6788899998875
No 16
>PRK00292 glk glucokinase; Provisional
Probab=99.82 E-value=6.9e-19 Score=180.01 Aligned_cols=290 Identities=17% Similarity=0.177 Sum_probs=180.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHh-cCCCCCCCCCCcceeee
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT-EGEGFHVSPGRQRELGF 174 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~-~~~~~~~~~~~~~~lGf 174 (498)
++|++|+||||+|++++++.+. .+... .+++.+. ++.+.+.+.+++++ .. .+...+|+
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~~--~~~~~~~----------~~~~~~~l~~~l~~~~~-------~~~~gigI 61 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQI--KTYATAD----------YPSLEDAIRAYLADEHG-------VQVRSACF 61 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceeee--EEEecCC----------CCCHHHHHHHHHHhccC-------CCCceEEE
Confidence 5899999999999999997443 23322 2233321 12244555566654 22 13567999
Q ss_pred EeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc-------------
Q 010895 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH------------- 241 (498)
Q Consensus 175 tFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~------------- 241 (498)
.++.|++...+...++ .|. . + .+.|++.+ ++| .+.+.||..+..+++.+.
T Consensus 62 g~pG~vd~~~i~~~n~-~w~---------~-~-~~~l~~~~---~~p--~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~ 124 (316)
T PRK00292 62 AIAGPVDGDEVRMTNH-HWA---------F-S-IAAMKQEL---GLD--HLLLINDFTAQALAIPRLGEEDLVQIGGGEP 124 (316)
T ss_pred EEeCcccCCEEEecCC-Ccc---------c-C-HHHHHHHh---CCC--eEEEEecHHHHHcccccCCHhheeEeCCCCC
Confidence 9999996322111122 242 2 2 47777777 774 148999999999998751
Q ss_pred -CCCcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeecccc
Q 010895 242 -NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISG 320 (498)
Q Consensus 242 -~~~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG 320 (498)
+.+..+.+.+|||.+++++.+. ..+..+.++|.|||.++...-. +++.. ...|..-|..|+|.++||
T Consensus 125 ~~~~~~~~v~~GTGiG~giv~~g--~~g~~g~agE~GH~~~~~~~~~---------~~~~~-~~~c~~~~~gclE~~~Sg 192 (316)
T PRK00292 125 VPGAPIAVIGPGTGLGVAGLVPV--DGRWIVLPGEGGHVDFAPRSEE---------EAQIL-QYLRAEFGHVSAERVLSG 192 (316)
T ss_pred CCCCcEEEEEcCCcceEEEEEec--CCceEEccCCcccccCCCCChH---------HHHHH-HHHHHhcCCceeEeeecH
Confidence 1367899999999999999876 5666666667788877431100 00000 000122235699999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHH-HHH
Q 010895 321 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVV-ELC 399 (498)
Q Consensus 321 ~YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~-~ia 399 (498)
..|.++.+...... + . ++. .. ....+++. ++..+ .+|
T Consensus 193 ~~L~~~~~~~~~~~---~-----~-~~~---------------------~~-~~~~i~~~-----------a~~gdd~~A 230 (316)
T PRK00292 193 PGLVNLYRAICKAD---G-----R-EPE---------------------LL-TPADITER-----------ALAGSCPLC 230 (316)
T ss_pred HhHHHHHHHHHhhc---C-----C-Ccc---------------------cC-CHHHHHHH-----------HHhCCChHH
Confidence 99987665432110 0 0 000 00 12233333 33344 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEec-ccHhHHH-HHHHHHHHHh-CcC--CCccEEEEEc
Q 010895 400 DIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFE-HYTKFSA-CMQSTVKELL-GEE--VSETVVIEHS 474 (498)
Q Consensus 400 ~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~-~~p~f~~-~l~~~l~~l~-~~~--~~~~i~l~~~ 474 (498)
..+++++++++|.+|+.+++.++| +.. |.+.|++.. ..+.|.+ .+.+.+.+.. .+. ....|.+.+.
T Consensus 231 ~~~~~~~~~~lg~~i~~l~~~~~P--------~~~-vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (316)
T PRK00292 231 RRTLSLFCVILGRVAGNLALTLGA--------RGG-VYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITH 301 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--------Cce-EEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcC
Confidence 899999999999999999999998 212 557888874 5565555 4556555421 110 1235666788
Q ss_pred CChhHHHHHHHH
Q 010895 475 NDGSGIGAALLA 486 (498)
Q Consensus 475 ~Dgs~iGAAi~A 486 (498)
+|.+++|||.++
T Consensus 302 ~~agl~GAa~~~ 313 (316)
T PRK00292 302 PQPGLLGAGAYL 313 (316)
T ss_pred CChHHHHHHHHH
Confidence 999999998765
No 17
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.82 E-value=1.9e-18 Score=171.67 Aligned_cols=240 Identities=13% Similarity=0.161 Sum_probs=171.1
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeE
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGft 175 (498)
.+|++|+|||++|++++++.++ ++.+. +++.|. .+.+++++.+.+.+.++..... ....+|++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQ---RIWHK--RVPTPR----EDYPQLLQILRDLTEEADTYCG--------VQGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CCceEEEE
Confidence 3799999999999999999875 55332 344442 2466788888888887754322 13479999
Q ss_pred eeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc----CCCcEEEEEE
Q 010895 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (498)
Q Consensus 176 FSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~----~~~~~iglIl 251 (498)
++.|++. +.+++ .++ +.+++.+.|+.+.|++.+ ++| +.+.||+.+..+++.|. +.+..+++.+
T Consensus 64 ~pG~vd~---~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~l 130 (256)
T PRK13311 64 IPGLPNA---DDGTV-FTA---NVPSAMGQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGLIL 130 (256)
T ss_pred ecCcEEC---CCCEE-Ecc---CCCcccCCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEE
Confidence 9999964 34554 454 556677899999999999 888 58999999999999873 5689999999
Q ss_pred ccCceeeEEcccCccccccCCCCCCCcEEEe--ccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHH
Q 010895 252 GTGTNAAYVERAHAIPKWHGLLPKSGEMVIN--MEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRR 329 (498)
Q Consensus 252 GTGtNa~yie~~~~i~k~~~~~~~~~~miIN--~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~ 329 (498)
|||.+++++.+.+.+.+.++.+++.+||.+. .+- .++. .++ ...-.|.+. .|+|.++|+..|.+..+.
T Consensus 131 gtGiG~giv~~G~l~~G~~g~AGEiGh~~v~~~~~~-~~~~------~~~-~~~c~cG~~--GclE~~~S~~ai~~~~~~ 200 (256)
T PRK13311 131 GTGVGGGLIVNGSIVSGRNHITGEFGHFRLPVDALD-ILGA------DIP-RVPCGCGHR--GCIENYISGRGFEWMYSH 200 (256)
T ss_pred CcCeEEEEEECCEEecCCCCCCccceeEEeccCccc-cccc------CCC-CCcCCCCCc--cchhheecHHHHHHHHHH
Confidence 9999999999999999988888899999983 210 0000 000 000125564 599999999988553321
Q ss_pred HHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 010895 330 VLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARL 409 (498)
Q Consensus 330 il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l 409 (498)
+ .. .. + ...++++. ++..+..|..++++++++
T Consensus 201 ----~------~~--------~~--~-----------------~~~~l~~~-----------~~~gd~~a~~~~~~~~~~ 232 (256)
T PRK13311 201 ----F------YQ--------HT--L-----------------PATDIIAH-----------YAAGEPKAVAHVERFMDV 232 (256)
T ss_pred ----h------cc--------CC--C-----------------CHHHHHHH-----------HHcCCHHHHHHHHHHHHH
Confidence 1 00 00 0 12233333 222347888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 010895 410 SAAGIVGILKKLGR 423 (498)
Q Consensus 410 ~Aa~iaai~~~~~~ 423 (498)
+|.+|+++++.+++
T Consensus 233 la~~i~nl~~~~~~ 246 (256)
T PRK13311 233 LAVCLGNLLTMLGS 246 (256)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999987
No 18
>PRK12408 glucokinase; Provisional
Probab=99.81 E-value=4.9e-19 Score=182.77 Aligned_cols=296 Identities=17% Similarity=0.102 Sum_probs=180.9
Q ss_pred CCccce-eEEEEEeCCceEEEEEEEeCCCc---ceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCC
Q 010895 90 TGDEKG-LFYALDLGGTNFRVLRVQLGGRE---GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVS 165 (498)
Q Consensus 90 tG~E~G-~~LaiDlGGTnlRv~~V~l~g~~---~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~ 165 (498)
++-|++ +||++|+||||+|+++|+.++.. ..+... .+.|+.. .+.+ .+.+.+|+++ ..
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~----~~~~t~~----~~~~----~~~i~~~~~~-~~----- 71 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLDY----RTYRCAD----YPSL----AAILADFLAE-CA----- 71 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCccccccccce----eEecCCC----ccCH----HHHHHHHHhc-CC-----
Confidence 445555 39999999999999999875541 011211 1223221 1223 3335566654 21
Q ss_pred CCCcceeeeEeeee-eeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc---
Q 010895 166 PGRQRELGFTFSFP-VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--- 241 (498)
Q Consensus 166 ~~~~~~lGftFSfP-~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~--- 241 (498)
+...+|++++.| ++ +|++. .+ |++ +. .+.+.|++.+ ++| .|.++||..+..+++.+.
T Consensus 72 --~~~~igIg~pG~~~~-----~g~v~-~~---nl~-w~--~~~~~l~~~~---~~~--~V~l~ND~naaa~gE~~~~~~ 132 (336)
T PRK12408 72 --PVRRGVIASAGYALD-----DGRVI-TA---NLP-WT--LSPEQIRAQL---GLQ--AVHLVNDFEAVAYAAPYMEGN 132 (336)
T ss_pred --CcCEEEEEecCCceE-----CCEEE-ec---CCC-Cc--cCHHHHHHHc---CCC--eEEEeecHHHHHcccccCCHh
Confidence 246799999998 33 35543 22 222 21 2346777776 773 159999999999999875
Q ss_pred ----------CC-CcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCcccccc-ccccCCCC
Q 010895 242 ----------NK-DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEA-LDTESLNP 309 (498)
Q Consensus 242 ----------~~-~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~-~D~~s~nP 309 (498)
+. ...+.+++|||.+++.+.+.+ .+.++.++|.|||.+... +..+.. ....|...
T Consensus 133 ~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~--~g~~~~agE~GH~~~~~~-----------~~~~~~l~~~~~~~~ 199 (336)
T PRK12408 133 QVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG--GRPVVLPTEAGQAALAAA-----------SELEMQLLQHLLRTR 199 (336)
T ss_pred HeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC--CceeeecCccccccCCCC-----------CHHHHHHHHHHHhhC
Confidence 23 578999999999999998776 454455566677766321 100000 00113344
Q ss_pred CcceeeeccccccHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCH
Q 010895 310 GEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSL 389 (498)
Q Consensus 310 G~q~fEkm~SG~YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~ 389 (498)
|..++|.++||+.|.++.+...... + ..+ ..+ ....+++.
T Consensus 200 ~~~~~E~~~Sg~gL~~~~~~~~~~~---~-----~~~------~~~-----------------~~~~v~~~--------- 239 (336)
T PRK12408 200 THVPIEHVLSGPGLLNLYRALCALR---G-----ATP------VHA-----------------SPAAITAA--------- 239 (336)
T ss_pred CceeHhheecHHHHHHHHHHHHhhc---C-----CCc------ccC-----------------CHHHHHHH---------
Confidence 4568999999999998877653210 0 000 000 12233332
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecc-cHhHHHH--HHHHHHHHhCcCC
Q 010895 390 KMRKLV-VELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEH-YTKFSAC--MQSTVKELLGEEV 465 (498)
Q Consensus 390 ~d~~~~-~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~-~p~f~~~--l~~~l~~l~~~~~ 465 (498)
+... +..|..+++++++++|.++++++..++| + .-|.+.||+... .+.|.+. +++.+++...+..
T Consensus 240 --a~~ggD~~A~~~~~~~~~~La~~i~nl~~~ldP--------e-~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~ 308 (336)
T PRK12408 240 --ALAGDDALAHEALQVFCGFLGSVVGDMALAYGA--------R-GGVYLAGGILPQIADFLARSDFVERFLNKGPMRPA 308 (336)
T ss_pred --HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C-ceEEEECchhHhHHhhhcCHHHHHHHhccCchhhH
Confidence 1222 3788889999999999999999999998 3 226789999876 4555554 7776665422111
Q ss_pred --CccEEEEEcCChhHHHHHHHH
Q 010895 466 --SETVVIEHSNDGSGIGAALLA 486 (498)
Q Consensus 466 --~~~i~l~~~~Dgs~iGAAi~A 486 (498)
...|.+....|.+++|||.++
T Consensus 309 ~~~~~I~~~~~~~agl~GAa~~~ 331 (336)
T PRK12408 309 LEQVPVKLVEHGQLGVLGAASWY 331 (336)
T ss_pred hcCCCEEEEeCCChHHHHHHHHH
Confidence 123444444589999998544
No 19
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.68 E-value=1.3e-15 Score=169.89 Aligned_cols=290 Identities=16% Similarity=0.186 Sum_probs=174.3
Q ss_pred ceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceee
Q 010895 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (498)
-|-+|++|+||||+|+++++-+|. +... .++|+.. |+.+.+.|.+|+++.+. .....+|
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~g~---i~~~----~~~~t~~--------~~~~~~~i~~~l~~~~~------~~~~~ig 75 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGPGE---ITQI----RVYPGAD--------YPTLTDAIRKYLKDVKI------GRVNHAA 75 (638)
T ss_pred CCCEEEEEcCchhheeeeecCCCc---ccce----eEEecCC--------CCCHHHHHHHHHHhcCC------CCcceEE
Confidence 345999999999999999965553 4322 2344421 24466777777765432 1357899
Q ss_pred eEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcc--------cc----c
Q 010895 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RY----H 241 (498)
Q Consensus 174 ftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~--------ay----~ 241 (498)
+.+++|++...+...++ .|. .++ +.|++.+ |+| ++.++||..+..+++ .+ +
T Consensus 76 ig~pGpVd~~~~~~~nl-~w~----------~~~-~~l~~~~---g~~--~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~ 138 (638)
T PRK14101 76 IAIANPVDGDQVRMTNH-DWS----------FSI-EATRRAL---GFD--TLLVVNDFTALAMALPGLTDAQRVQVGGGT 138 (638)
T ss_pred EEEecCccCCeeeecCC-CcE----------ecH-HHHHHHc---CCC--eEEEEchHHHHHcCCccCCHHHeEEeCCCC
Confidence 99999997432222222 342 244 6677776 775 368999999999995 22 2
Q ss_pred CCCcEEEEEEccCceee---EE-cccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccc-cccCCCCCcceeee
Q 010895 242 NKDAIAAVILGTGTNAA---YV-ERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEAL-DTESLNPGEQIFEK 316 (498)
Q Consensus 242 ~~~~~iglIlGTGtNa~---yi-e~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~-D~~s~nPG~q~fEk 316 (498)
+.+..+.+++||||+.+ .+ .+.+. ++.-.|+|...- .|.+.-...+ ...+.+.|..++|.
T Consensus 139 ~~~~~~~~~lGtGTGlG~a~lv~~~g~~-------------~~~g~E~GH~~~--~~~~~~e~~~~~~~~~~~g~~~~E~ 203 (638)
T PRK14101 139 RRQNSVIGLLGPGTGLGVSGLIPADDRW-------------IALGSEGGHASF--APQDEREDLVLQYARKKYPHVSFER 203 (638)
T ss_pred CCCCCcEEEEECCccceeeEEEecCCee-------------EECCCCccccCC--CCCCHHHHHHHHHHHHhcCcceeee
Confidence 34567889997766544 32 33221 122235554320 1111110100 11133445679999
Q ss_pred ccccccHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHH
Q 010895 317 IISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVV 396 (498)
Q Consensus 317 m~SG~YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~ 396 (498)
++||+.|.++.|...... + .+ .+- .+ ...++++. ++..+
T Consensus 204 ~~Sg~gL~~~~~~~~~~~---~------~~----~~~----------------~~-~~~~i~~~-----------a~~gd 242 (638)
T PRK14101 204 VCAGPGMEIIYRALAARD---K------KR----VAA----------------NV-DTAEIVER-----------AHAGD 242 (638)
T ss_pred ecchhhHHHHHHHHHhhc---C------CC----CcC----------------cC-CHHHHHHH-----------HHCCC
Confidence 999999999887643211 0 00 000 00 12334443 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEeccc-HhHHH-HHHHHHHHHhCcC----CCccEE
Q 010895 397 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHY-TKFSA-CMQSTVKELLGEE----VSETVV 470 (498)
Q Consensus 397 ~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~-p~f~~-~l~~~l~~l~~~~----~~~~i~ 470 (498)
.+|..++++.++++|.+++.++..+++. + .|.++||+..+. +.|.+ .+.+.+.+. ++- ....|.
T Consensus 243 ~~A~~~~~~~~~~lg~~~~nl~~~~~~p-------~--~vvigGGIs~~~~~~l~~~~f~~~f~~k-g~~~~~~~~ipv~ 312 (638)
T PRK14101 243 ALALEAVECFCAILGTFAGNLALTLGAL-------G--GIYIGGGVVPKLGELFTRSSFRARFEAK-GRFEAYLANIPTY 312 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C--cEEEeCcHHHHHHHHcChHHHHHHHHhC-CChHHHHhcCCEE
Confidence 8899999999999999999999999831 2 467999998654 33332 344444331 110 123688
Q ss_pred EEEcCChhHHHHHHHHH
Q 010895 471 IEHSNDGSGIGAALLAA 487 (498)
Q Consensus 471 l~~~~Dgs~iGAAi~Aa 487 (498)
++..++.+++|||..+.
T Consensus 313 ~i~~~~~~l~Gaa~~~~ 329 (638)
T PRK14101 313 LITAEYPAFLGVSAILA 329 (638)
T ss_pred EEeCCChhHHHHHHHHH
Confidence 88899999999976543
No 20
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.65 E-value=2e-15 Score=141.37 Aligned_cols=175 Identities=22% Similarity=0.335 Sum_probs=140.2
Q ss_pred EEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEeee
Q 010895 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (498)
Q Consensus 99 aiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFSf 178 (498)
+||+|+|+++++++++.|+ ++.+. .+++| .+.+++++.+.+.+.+++.+.+. . .+|++++.
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYSE--SIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEEE--EEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEEE--EEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 6999999999999999886 66443 45555 35788999999999999988652 2 89999999
Q ss_pred eeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccc----cCCCcEEEEEEccC
Q 010895 179 PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY----HNKDAIAAVILGTG 254 (498)
Q Consensus 179 P~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay----~~~~~~iglIlGTG 254 (498)
|++. .++.++.... +++.+.|+.+.|++.+ ++| +.+.||+.+..+++.+ .+.+..+.+.+|||
T Consensus 62 ~v~~---~~g~i~~~~~----~~~~~~~l~~~l~~~~---~~p---v~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDS---EKGRIISSPN----PGWENIPLKEELEERF---GVP---VIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEET---TTTEEEECSS----GTGTTCEHHHHHHHHH---TSE---EEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcC---CCCeEEecCC----CCcccCCHHHHhhccc---ceE---EEEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 9975 3355554432 6677799999999999 888 5899999999999986 24679999999999
Q ss_pred ceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccH
Q 010895 255 TNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYL 323 (498)
Q Consensus 255 tNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YL 323 (498)
++++++.+.+.+.+.++.+++.+||.++.+.-.|. |++ .+|+|.++|+..|
T Consensus 129 iG~~ii~~g~i~~G~~~~aGeigh~~~~~~~~~c~----------------cG~--~GClE~~~S~~Al 179 (179)
T PF00480_consen 129 IGAGIIINGKIYRGSNGFAGEIGHMPVDPNGEPCY----------------CGN--RGCLETYASGRAL 179 (179)
T ss_dssp EEEEEEETTEEETTTTS-TTGGGGSBSSTTSSB-T----------------TSS--BSBHHHHHSHHHH
T ss_pred CCcceecccccccCCCccccceeeeeccCCCCcCC----------------CCC--cCcHHHhhChhhC
Confidence 99999999999998888788889999886533332 555 5699999999865
No 21
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.62 E-value=4e-15 Score=152.45 Aligned_cols=289 Identities=16% Similarity=0.187 Sum_probs=164.8
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEee
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFS 177 (498)
|++|+||||+|+++++.++. .+... +.+.. +.++.+.+.|.+|+++.+... .......|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~---~l~~~----~~~~~-------~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG---EISQA----KTYSG-------LDFPSLEAVVRVYLEEHKVEL---KDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC---ceeee----EEEec-------CCCCCHHHHHHHHHHhccccc---CCCcCeEEEEEe
Confidence 68999999999999987553 22211 11111 124556666667766543110 012345889999
Q ss_pred eeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcc--------cc----cCCCc
Q 010895 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RY----HNKDA 245 (498)
Q Consensus 178 fP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~--------ay----~~~~~ 245 (498)
.|++...+...++ .|. .++. .|++.+ +++ .+.|.||..+..+++ .+ +..+.
T Consensus 64 Gpv~~~~v~~~nl-~w~----------~~~~-~l~~~~---g~~--~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~ 126 (316)
T TIGR00749 64 CPITGDWVAMTNH-TWA----------FSIA-ELKQNL---GFS--HLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEG 126 (316)
T ss_pred CcccCCEEEecCC-CCe----------eCHH-HHHHhc---CCC--eEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCC
Confidence 9984321111122 342 4563 677766 763 259999999999998 54 24466
Q ss_pred EEEEEEccCceee--EEc---ccCccccccCCCCCCCcEEEeccCCCcCCCCCCCcccc----ccccccCCCCCcceeee
Q 010895 246 IAAVILGTGTNAA--YVE---RAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYD----EALDTESLNPGEQIFEK 316 (498)
Q Consensus 246 ~iglIlGTGtNa~--yie---~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D----~~~D~~s~nPG~q~fEk 316 (498)
.+.+++||||+.+ .+. +.+.+ ..++|.|||.+... +.-+ ..+...+ +..|+|.
T Consensus 127 ~~~v~lGtGtG~G~~~vi~~~~g~l~----~~agE~GH~~~~~~-----------~~~~~~~~~~l~~~~---~~g~~E~ 188 (316)
T TIGR00749 127 KPIAILGAGTGLGVAHLIHQVDGRWV----VLPGEGGHVDFAPN-----------SELEAIILEYLRAKI---GHVSAER 188 (316)
T ss_pred CcEEEEecCCCceeeEEEEcCCCCEE----ECCCCcccccCCCC-----------CHHHHHHHHHHHHhc---CCceeee
Confidence 7899996666544 355 33332 23456666665320 1000 0011223 3569999
Q ss_pred ccccccHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHH
Q 010895 317 IISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVV 396 (498)
Q Consensus 317 m~SG~YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~ 396 (498)
++||+.|.++.|...... +. . .+ .. ... +.+ ..+.+++. ++..+
T Consensus 189 ~~Sg~gl~~~~~~~~~~~---~~------~-~~-~~----------~~~---~~~-~~~~I~~a-----------a~~Gd 232 (316)
T TIGR00749 189 VLSGPGLVNIYEALVKAD---PE------R-QF-NK----------LPQ---ENL-KPKDISER-----------ALAGS 232 (316)
T ss_pred eecHHHHHHHHHHHHhhc---Cc------c-cc-cc----------ccc---ccC-CHHHHHHH-----------HHcCC
Confidence 999999999888753221 00 0 00 00 000 001 12344444 33443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEe-cccHhHHH-HHHHHHHHH--hCc-CCCccEE
Q 010895 397 -ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLF-EHYTKFSA-CMQSTVKEL--LGE-EVSETVV 470 (498)
Q Consensus 397 -~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~-~~~p~f~~-~l~~~l~~l--~~~-~~~~~i~ 470 (498)
.+|..++++.++++|.+++.++..++|. .. |.+.||+. +.-+.+.+ .+.+.+++. +.+ -..-.|.
T Consensus 233 d~~A~~~~~~~~~~lg~~i~nl~~~ldpe--------gg-v~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~ 303 (316)
T TIGR00749 233 CTDCRRALSLFCVIYGRFAGNLALNLGTR--------GG-VYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVY 303 (316)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------Cc-EEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEE
Confidence 7899999999999999999999999982 22 34566665 33333333 233333221 000 0123688
Q ss_pred EEEcCChhHHHHH
Q 010895 471 IEHSNDGSGIGAA 483 (498)
Q Consensus 471 l~~~~Dgs~iGAA 483 (498)
+...++.++.|||
T Consensus 304 ~i~~~~~~l~G~~ 316 (316)
T TIGR00749 304 VVLHDNPGLLGAG 316 (316)
T ss_pred EEcCCCccccCCC
Confidence 8889999999985
No 22
>PTZ00288 glucokinase 1; Provisional
Probab=99.47 E-value=3.5e-11 Score=126.68 Aligned_cols=336 Identities=15% Similarity=0.083 Sum_probs=190.3
Q ss_pred HHHHHHHHHhhcCCCCCCcceeecccccCCCCccceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccC
Q 010895 60 DAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS 139 (498)
Q Consensus 60 ~~f~~em~~gL~~~~~s~l~MlPs~v~~~PtG~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~ 139 (498)
+.|.+++.+-|+++. +|- .. +++|++|+||||.|+++.++...+...+.. ..++.+ ++..+
T Consensus 6 ~~~~~~~~~~~~~~~--------~~~-~~------~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~--~~~~~~--~~~~~ 66 (405)
T PTZ00288 6 EIFLEQLAEELKTDA--------SWS-SG------PIFVGCDVGGTNARVGFAREVQHDDSGVHI--IYVRFN--VTKTD 66 (405)
T ss_pred HHHHHHHHHHhccCc--------ccc-cC------CeEEEEEecCCceEEEEEeccCCCCCceeE--EEEecc--ccccc
Confidence 456667777776532 121 12 379999999999999999983211111211 124444 11234
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcC
Q 010895 140 SHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG 219 (498)
Q Consensus 140 ~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~ 219 (498)
..++.+++++.++...+.... ...+....|....|+.... -.|.+.+|+.-+.+++. ...+
T Consensus 67 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~iAvAGPV~~~~-~~~~~~~~~~~~~lTNl-pw~i------------ 127 (405)
T PTZ00288 67 IRELLEFFDEVLQKLKKNLSF-----IQRVAAGAISVPGPVTGGQ-LAGPFNNLKGIARLTDY-PVEL------------ 127 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-----ccCcCeEEEEEeCceeCCE-eeccccccccccccCCC-Cchh------------
Confidence 567888888777776543210 0234456778888995322 12344678766555542 1111
Q ss_pred CCeeEEEEEechHHHHhccccc--------------------------------CCCcEEEEEEccCceeeEEcccCccc
Q 010895 220 LDMRVAALVNDTIGTLAGGRYH--------------------------------NKDAIAAVILGTGTNAAYVERAHAIP 267 (498)
Q Consensus 220 l~v~vvaivNDTvatlla~ay~--------------------------------~~~~~iglIlGTGtNa~yie~~~~i~ 267 (498)
++..-+.++||=.|..++.... .....+.+..|||.++|++.+...+.
T Consensus 128 ~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~l~~ 207 (405)
T PTZ00288 128 FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVGVSD 207 (405)
T ss_pred cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCeecC
Confidence 3344479999988877765421 12345889999999999999887777
Q ss_pred cccCCCCCCCcEEEeccCC-CcCCCCCCCcccccccccc-C---CCCCcceeeeccccccHHHHHHHHHHHHHhccCCCC
Q 010895 268 KWHGLLPKSGEMVINMEWG-NFRSSHLPLTEYDEALDTE-S---LNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFG 342 (498)
Q Consensus 268 k~~~~~~~~~~miIN~EwG-~f~~~~lp~T~~D~~~D~~-s---~nPG~q~fEkm~SG~YLgEi~R~il~~~~~~~~lF~ 342 (498)
++...+.|.|||.++.--+ .+... ..-|...-.+. | .+...-++|.++||+-|..+.|.... .
T Consensus 208 G~~~~agEgGHv~~~~~~~~~~~~g---~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~l~~----~----- 275 (405)
T PTZ00288 208 QYIVIPLECGHLSISWPANEDSDYV---QALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAYEKR----G----- 275 (405)
T ss_pred CcccccccccceeeccCCCCccchh---HHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHHHhc----c-----
Confidence 7777777888888742111 01000 00000000000 0 00112389999999999887775311 0
Q ss_pred CCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 010895 343 DTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLG 422 (498)
Q Consensus 343 ~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~ 422 (498)
..++ . +.....++.+... ...+..|..++++.+++++.++..++..++
T Consensus 276 -~~~~-~--------------------~~~~~a~ia~~A~----------~~gD~~A~~al~~f~~~LG~~~~nlal~l~ 323 (405)
T PTZ00288 276 -NKPS-A--------------------PLKEAAEVAKLAK----------YGSDVAAVKAMKRHYKYLMRLAAEISMQFL 323 (405)
T ss_pred -CCCc-c--------------------CcCCHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 0000 0 0001122222200 012267888999999999999999999999
Q ss_pred CCCcCCCCCceEEEEEeceEecccHhHHH------HHHHHH-------HHHhCcCCCccEEE-EEcCChhHHHHHHHHHH
Q 010895 423 RDTVRDGEKQKSVIALDGGLFEHYTKFSA------CMQSTV-------KELLGEEVSETVVI-EHSNDGSGIGAALLAAS 488 (498)
Q Consensus 423 ~~~~~~~~~~~~~I~idGsv~~~~p~f~~------~l~~~l-------~~l~~~~~~~~i~l-~~~~Dgs~iGAAi~Aa~ 488 (498)
| +. |.+.|++..+...|.. .++... .+++. .-.|.+ +...+-+++|||..|..
T Consensus 324 P--------~~--VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~---~ipv~~qv~~~~~gL~Gaa~~a~~ 390 (405)
T PTZ00288 324 P--------LT--VVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLS---RTTFLRQKKSVNLNLLGCLQFGSQ 390 (405)
T ss_pred C--------CE--EEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHh---cCceEEEEeCCCccHHHHHHHHHH
Confidence 8 32 5566655444433322 222211 22221 124545 66889999999988865
Q ss_pred hc
Q 010895 489 HS 490 (498)
Q Consensus 489 ~~ 490 (498)
.+
T Consensus 391 ~~ 392 (405)
T PTZ00288 391 LS 392 (405)
T ss_pred hh
Confidence 43
No 23
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=99.09 E-value=3.8e-08 Score=98.53 Aligned_cols=271 Identities=21% Similarity=0.279 Sum_probs=156.5
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEee
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFS 177 (498)
|+||.|||+.|+.+++.+|+ ++.+ ...-|.+......++..+.|.+-+.+.+++.+.. ..+...+.++.+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~---~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~----~~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGR---GKGGGANYNSVGFEEAMENIKEAIEEALSQAGLS----PDDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEE---EEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEE---EEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCC----ccccceeeeeEe
Confidence 79999999999999998775 5433 2334555543345677788888888888876643 111122222222
Q ss_pred eeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccccCCCcEEEEEEccCcee
Q 010895 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (498)
Q Consensus 178 fP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~~~~~iglIlGTGtNa 257 (498)
+--.+ + . ..+...+.+.. + +.+.||++..+.+..- +.-|-+|-|||+++
T Consensus 71 G~~~~------------------~---~-~~~~~~~~~~~---~---v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 71 GYGRA------------------G---D-EQEFQEEIVRS---E---VIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp EEEET------------------T---T-TTHHHHHHHHH---E---EEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred eecCc------------------c---c-ccchhhcceEE---E---EEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 21111 0 0 00111222212 3 5889999887777643 46788999999999
Q ss_pred eEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHHHHHHHHhc
Q 010895 258 AYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEE 337 (498)
Q Consensus 258 ~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il~~~~~~ 337 (498)
..+.+ .+++.-.--||.|- ..-| ||.++| |+.|....+.
T Consensus 120 ~~~~~-------------~g~~~r~gG~G~~~-----------------gD~G--------Sg~~ig---~~~L~~~~~~ 158 (271)
T PF01869_consen 120 YGRDR-------------DGRVIRFGGWGHCL-----------------GDEG--------SGYWIG---RRALRAVLRE 158 (271)
T ss_dssp EEEET-------------TSEEEEEEESCTTT-----------------TTTT--------SHHHHH---HHHHHHHHHH
T ss_pred EEEEc-------------CCcEEEeCCCCCCc-----------------CCCC--------cHHHHH---HHHHhHHHHH
Confidence 88762 33455555688652 1222 566665 3444443322
Q ss_pred cCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010895 338 ANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGI 417 (498)
Q Consensus 338 ~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~Aa~iaai 417 (498)
-. +..++....+. ...+.++.+ +..++ +..+.....|..|++++++.++..+.++
T Consensus 159 ~d---~~~~~~~~~~~-~~~~~~A~f----------a~~v~-----------~~a~~gd~~a~~Il~~a~~~la~~i~~~ 213 (271)
T PF01869_consen 159 LD---GRAEPTPYAKP-ASNARIAVF----------APTVF-----------EAAQQGDEVARDILAEAADELAELIKAV 213 (271)
T ss_dssp HT---TSSTTSHHHHT-T-HHHHHCT----------HHHHH-----------HHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc---CccccCcccCC-CChhheehh----------hHHHH-----------HHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 11 11111110000 000011100 11112 2244556889999999999999999999
Q ss_pred HHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHH
Q 010895 418 LKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLA 486 (498)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~A 486 (498)
+.+..... . .|.+-||++++.+ |.+.+++.|++.+... ....+...+..+.+|||++|
T Consensus 214 ~~~~~~~~------~--~v~l~GGv~~~~~-~~~~l~~~l~~~~~~~--~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 214 LKRLGPEK------E--PVVLSGGVFKNSP-LVKALRDALKEKLPKV--PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHTCTCCC------C--SEEEESGGGGCHH-HHHHHGGGS-HHHHCC--TCECECCGSSHHHHHHHHHH
T ss_pred HHhcCCCC------C--eEEEECCccCchH-HHHHHHHHHHHhcCCC--ceEECCCCCccHHHHHHHhC
Confidence 99887631 1 2889999998755 5566777776655432 12334567888999999986
No 24
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=6.6e-07 Score=88.64 Aligned_cols=313 Identities=19% Similarity=0.230 Sum_probs=173.2
Q ss_pred ceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCC-ccee
Q 010895 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR-QREL 172 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~-~~~l 172 (498)
.|.|.++|=|+|.-|+.+|+..++ +.-+.+ .--+...-...+..-+.|++.|.+-..+.+.+ +.. .-.|
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~---~~~~a~---~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d----~~~~lr~l 71 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGT---ILGRAV---GGGTNHWLIGSTTCASRIEDMIREAKEKAGWD----KKGPLRSL 71 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCC---EeeEee---ccccccccCCchHHHHHHHHHHHHHHhhcCCC----ccCcccee
Confidence 478999999999999999987664 332211 11111111113344555666555555555433 222 3456
Q ss_pred eeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHc-CCCeeEEEEEechHHHHhcccccCCCcEEEEEE
Q 010895 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDTIGTLAGGRYHNKDAIAAVIL 251 (498)
Q Consensus 173 GftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~-~l~v~vvaivNDTvatlla~ay~~~~~~iglIl 251 (498)
|..||.- +| .|-++.|.+.|..+ .--++=..|.||+.+++.+. +.....=|-+|-
T Consensus 72 gL~lSg~-d~----------------------e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~-t~g~~~GiVLia 127 (336)
T KOG1794|consen 72 GLGLSGT-DQ----------------------EDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAA-TPGGEGGIVLIA 127 (336)
T ss_pred eeecccC-Cc----------------------hhHHHHHHHHHHHhccchhheeeeehhHHHHHhhc-CCCCCCcEEEEe
Confidence 6666642 22 23334444444322 11123368999999999887 444455678999
Q ss_pred ccCceeeEEcccCccccccCCCCCCCcEEEeccCC-CcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHHH
Q 010895 252 GTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWG-NFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRV 330 (498)
Q Consensus 252 GTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG-~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~i 330 (498)
|||+|+=-+.+-....+. ..-+||+= .|| +|. +-+|-+-.-+|..-+ ||-|. --+.. +...
T Consensus 128 GTgs~crl~~~DGs~~~~----ggwg~~iG--d~GSayw---ia~~Avq~vfda~dg------~e~~~--~~i~~-v~~t 189 (336)
T KOG1794|consen 128 GTGSNCRLVNPDGSEKGA----GGWGHMIG--DGGSAYW---IARQAVQMVFDAEDG------FENMM--DKIKD-VKQT 189 (336)
T ss_pred cCCceeEEECCCCCccCC----CCCCCccC--CCcchhh---hhhhhhhheeehhcC------ccccc--chHHH-HHHH
Confidence 999997666553332221 22345543 233 443 233333333332211 22221 11222 2333
Q ss_pred HHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 010895 331 LCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLS 410 (498)
Q Consensus 331 l~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~ 410 (498)
+.++ | .+++++.. +...-+|. +.........+ + .+..++.+.+++.|.++|+..+
T Consensus 190 if~~------~--~l~d~l~m--------l~~~Ys~f--~k~riA~f~~k-l------a~~ae~Gd~~~~~ifr~Ag~~L 244 (336)
T KOG1794|consen 190 IFKH------F--NLRDRLQM--------LEHLYSDF--DKHRIALFTEK-L------AEHAEIGDPLSAEIFRNAGETL 244 (336)
T ss_pred HHHH------c--CCCCHHHH--------HHHHHhcc--hHHHHHHHHHH-H------HhhhhccCHHHHHHHHHHHHHH
Confidence 3332 1 22322211 00011111 11111111111 1 1235667899999999999999
Q ss_pred HHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHh
Q 010895 411 AAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASH 489 (498)
Q Consensus 411 Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~ 489 (498)
|--+.|++..+.+...+ . ...-|.+-|||+..+..+.+-....+... +.-..+++..-++.|.+|||++||-.
T Consensus 245 g~~V~aVl~~l~~~~k~-g--~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~---~~f~~~~l~~~k~ssAvgAA~laa~~ 317 (336)
T KOG1794|consen 245 GRHVVAVLPQLPPTLKK-G--KTLPIVCVGGVFDSWDLLQEGFLDSLSDT---RGFERVELYRPKESSAVGAAILAASL 317 (336)
T ss_pred HHHHHHHHhhcCchhcc-c--CcceEEEEcchhhHHHHHHHHHHHHhhcc---cCccceEEEeecccchHHHHHHhhhh
Confidence 99999999999874321 0 23458889999999988887777766552 12346788778899999999999753
No 25
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=98.71 E-value=4.6e-07 Score=93.02 Aligned_cols=291 Identities=20% Similarity=0.203 Sum_probs=158.2
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEee
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFS 177 (498)
|+-|+||||.|+++++..+...++... +.|+- .+...|.+.|.+.+.+. ..+ ...+....|...
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~--~~~~~------~~~~s~~~~l~~~l~~~--~~~------~~~p~~~~iavA 64 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDI--RRYPS------ADFPSFEDALADYLAEL--DAG------GPEPDSACIAVA 64 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEE--EEEEG------CCCCHHHHHHHHHHHHT--CHH------HTCEEEEEEEES
T ss_pred CeEEeCcccEEEEEEEcCCCCcccccc--EEEec------CCcCCHHHHHHHHHHhc--ccC------CCccceEEEEEe
Confidence 678999999999999987653222322 22332 23344555554444432 111 123456888899
Q ss_pred eeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc-------------CC-
Q 010895 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-------------NK- 243 (498)
Q Consensus 178 fP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~-------------~~- 243 (498)
.|+.. ++..+.+|. +.++ .+.|++.| +++ -+.++||=.|..++.-.. ++
T Consensus 65 GPV~~---~~~~lTN~~--W~i~-------~~~l~~~l---g~~--~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~ 127 (316)
T PF02685_consen 65 GPVRD---GKVRLTNLP--WTID-------ADELAQRL---GIP--RVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPG 127 (316)
T ss_dssp S-EET---TCEE-SSSC--CEEE-------HHHCHCCC---T-T--CEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTT
T ss_pred cCccC---CEEEecCCC--cccc-------HHHHHHHh---CCc--eEEEEcccchheeccCCCCHHHeeeccCCCCCCC
Confidence 99974 455554442 2222 13333333 554 368999988877765431 12
Q ss_pred CcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccc-cCCCCCcceeeecccccc
Q 010895 244 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT-ESLNPGEQIFEKIISGMY 322 (498)
Q Consensus 244 ~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~-~s~nPG~q~fEkm~SG~Y 322 (498)
....=+=.|||.|.|++.+. ..+..++-+|+|.-+ .-|+|+.+..+=+ -..+-|.=.+|..+||+-
T Consensus 128 ~~~~Vig~GTGLG~a~l~~~-----------~~~~~v~~sEgGH~~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~G 194 (316)
T PF02685_consen 128 GPRAVIGPGTGLGVALLVPD-----------GDGYYVLPSEGGHVD--FAPRTDEEAELLRFLRRRYGRVSVERVLSGRG 194 (316)
T ss_dssp S-EEEEEESSSEEEEEEEEE-----------TTEEEEEEE-GGGSB-----SSHHHHHHHHHHHHHCTS-BHHHCSSHHH
T ss_pred CcEEEEEcCCCcEEEEEEec-----------CCceEeCCCcccccc--CCCCCHHHHHHHHHHHHhcCCceeEeecchhh
Confidence 22222336888899999863 234569999999654 2366655543311 000113448899999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Q 010895 323 LGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIV 402 (498)
Q Consensus 323 LgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V 402 (498)
|..+.+-.... . ..+ +......+|.+.-.. --+.+|...
T Consensus 195 L~~ly~~l~~~----~-----~~~----------------------~~~~~~~~I~~~A~~----------~~d~~a~~a 233 (316)
T PF02685_consen 195 LENLYRFLAGE----R-----GAE----------------------PPLLSAAEISAAALE----------GGDPLAREA 233 (316)
T ss_dssp HHHHHHHHHCC----T-----T------------------------S----HHHHHHHHHC----------T--HHHHHH
T ss_pred HHHHHHHHHhc----c-----CCC----------------------CCCCCHHHHHHHHHc----------CCCHHHHHH
Confidence 98766543211 0 000 011123334433110 123688889
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHH------HHHH--HHHHHhCcCCCccEEEEEc
Q 010895 403 ATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSA------CMQS--TVKELLGEEVSETVVIEHS 474 (498)
Q Consensus 403 ~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~------~l~~--~l~~l~~~~~~~~i~l~~~ 474 (498)
++...++++.....+.-...+. . -|=+.||+..+.+.+.+ .+.+ .+++++. ...|.+...
T Consensus 234 l~~f~~~lg~~agdlaL~~~a~-------g--GvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~---~iPv~li~~ 301 (316)
T PF02685_consen 234 LDLFARILGRVAGDLALTFLAR-------G--GVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLE---DIPVYLITD 301 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T-------C--EEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHT---T--EEEE--
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-------e--eEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHh---cCcEEEEeC
Confidence 9999999999999888888772 2 36689999887765543 2221 1111221 236888889
Q ss_pred CChhHHHHHHHHH
Q 010895 475 NDGSGIGAALLAA 487 (498)
Q Consensus 475 ~Dgs~iGAAi~Aa 487 (498)
++.+++|||.+|.
T Consensus 302 ~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 302 PDAGLLGAAAYAR 314 (316)
T ss_dssp S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998763
No 26
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=98.52 E-value=1.7e-05 Score=82.64 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcC
Q 010895 396 VELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSN 475 (498)
Q Consensus 396 ~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~ 475 (498)
+..|+.+++..++.++.+|++++..++++. + .|.++||+.+ .+.+++.+.+.++.+. .|.+.+.+
T Consensus 265 D~~A~~a~d~~~~~la~~Ia~l~~~l~g~p------D--~IV~gGGI~e-~~~l~~~I~~~l~~~a------~v~~~pg~ 329 (351)
T TIGR02707 265 DEKAKLILDAMAYQIAKEIGKMAVVLKGKV------D--AIVLTGGLAY-SKYFVSEIIKRVSFIA------PVLVYPGE 329 (351)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------C--EEEEcchhhc-CHHHHHHHHHHHHhhC------CEEEeCCc
Confidence 367888999999999999999999994310 3 5789999986 4678899999888763 35555543
No 27
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.44 E-value=4.6e-07 Score=76.42 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=64.1
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeE
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGft 175 (498)
.+||||+|||++++++++-+|. +... .+++.. .+.+++++.+.+.+.++ . ...+|+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~----~~~~~~---~~~~~~~~~l~~~i~~~----~---------~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADP----LEVIPR---TNKEADAARLKKLIKKY----Q---------PDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecC----EEEEEe---cCcchHHHHHHHHHHHh----C---------CCEEEEe
Confidence 4899999999999999987664 4432 222221 13456777777666552 2 3568888
Q ss_pred eeeeeeeccCCceEE-EccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhc
Q 010895 176 FSFPVRQTSIASGDL-IKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAG 237 (498)
Q Consensus 176 FSfP~~q~~i~~g~L-i~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla 237 (498)
+++|++ |.+ ..| . .++.+.|++.+ ++| +.++||+.+|..+
T Consensus 59 ~pg~v~------g~~~~~~---------~-~~l~~~l~~~~---~~p---v~~~nDa~st~~a 99 (99)
T smart00732 59 LPLNMN------GTASRET---------E-EAFAELLKERF---NLP---VVLVDERLATVYA 99 (99)
T ss_pred CCcCCC------CCcCHHH---------H-HHHHHHHHHhh---CCc---EEEEeCCcccccC
Confidence 888873 222 123 2 56777777766 888 5899999888653
No 28
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.00048 Score=69.49 Aligned_cols=277 Identities=19% Similarity=0.158 Sum_probs=159.7
Q ss_pred ceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceee
Q 010895 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (498)
.-+||+||=|||..|..+-+.+|+ ++-+. ..=|.+..+...++-+.-|.+.|.+.+++.+.+ |-.
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~---vlg~g---~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~---------~~~ 68 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGN---VLGRG---KSGPANIQLVGKEEAVRNIKDAIREALDEAGLK---------PDE 68 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCc---EEEEe---ccCCceecccchHHHHHHHHHHHHHHHHhcCCC---------HHH
Confidence 347999999999999988887665 55432 334777776555888999999999999877643 222
Q ss_pred eEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCee-EEEEEechHHHHhcccccCCCcEEEEEEc
Q 010895 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR-VAALVNDTIGTLAGGRYHNKDAIAAVILG 252 (498)
Q Consensus 174 ftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~-vvaivNDTvatlla~ay~~~~~~iglIlG 252 (498)
+.++.+.-- ..|.+.....+ .+ .+.+|+- -+-|+||...+|.+.-..+.- +=+|.|
T Consensus 69 i~~~~agla-------------------~ag~~~~~~~~-~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~G--ii~i~G 125 (301)
T COG2971 69 IAAIVAGLA-------------------LAGANVEEARE-EL-ERLLPFAGKVDVENDGLIALRGALGDDDG--IIVIAG 125 (301)
T ss_pred hCceeeeee-------------------ccCcchhHHHH-HH-HHhcCccceEEEecChHHHHhhccCCCCC--EEEEec
Confidence 222222210 11222211111 11 2345544 568999999999988544322 335667
Q ss_pred cCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccccCCCCCcceeeeccccccHHHHHHHHHH
Q 010895 253 TGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLC 332 (498)
Q Consensus 253 TGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il~ 332 (498)
|| ++|+-.. .+....-=-||.+= ---.||.+||.-+ |.
T Consensus 126 TG--Si~~~~~------------gg~~~r~GG~Gf~I-------------------------gDegSga~ig~~~---L~ 163 (301)
T COG2971 126 TG--SIGYGRK------------GGRRERVGGWGFPI-------------------------GDEGSGAWIGREA---LQ 163 (301)
T ss_pred CC--eEEEEEe------------CCeeEEecCcCccc-------------------------cccchHHHHHHHH---HH
Confidence 76 5665431 12223333677541 1124888998543 33
Q ss_pred HHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHHHHHHHhhhccCC--------CCHHHHHHHHHHHHHHHH
Q 010895 333 RMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISN--------TSLKMRKLVVELCDIVAT 404 (498)
Q Consensus 333 ~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~--------~~~~d~~~~~~ia~~V~~ 404 (498)
+...+ |++..+ .-.|..+.+..+..| .+++....... +..+ .-.+.++..+.++..|.+
T Consensus 164 ~~lra---~DG~~~-----~t~L~d~v~~~f~~d----~edlv~~~y~a-~~~~~~ia~lap~V~~~A~~GD~~A~~Il~ 230 (301)
T COG2971 164 EALRA---FDGRRE-----ATPLTDAVMAEFNLD----PEDLVAFIYKA-GPGDKKIAALAPAVFEAARKGDPVAIRILK 230 (301)
T ss_pred HHHHH---hcCCcc-----CChHHHHHHHHhCCC----HHHHHHHHHhc-CCchHHHHHhhHHHHHHHHcCCHHHHHHHH
Confidence 32211 222222 122455555555432 33333333221 1100 112456677889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHH
Q 010895 405 RGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAAL 484 (498)
Q Consensus 405 RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi 484 (498)
+||.+++..+-++....+. ..+.+-||+++.+|.|...+++.+ ..+ . .+--..||..
T Consensus 231 ~aa~~i~~~~~~l~~~~g~----------~~l~l~GG~~~~~~~~~~~~~~~l---~~~-----~-----~~D~~~GA~~ 287 (301)
T COG2971 231 EAAAYIATLLEALSIFNGS----------EKLSLLGGLAPSYPYYLSLFRRAL---LVP-----P-----IGDALSGAVL 287 (301)
T ss_pred HHHHHHHHHHHHHhcccCC----------ceEEEeccccccchhhHHHHHHHh---cCC-----c-----cccHHHHHHH
Confidence 9997777776665422222 247789999999999999999864 211 1 3445678777
Q ss_pred HH
Q 010895 485 LA 486 (498)
Q Consensus 485 ~A 486 (498)
.|
T Consensus 288 ~A 289 (301)
T COG2971 288 LA 289 (301)
T ss_pred HH
Confidence 76
No 29
>PRK03011 butyrate kinase; Provisional
Probab=97.95 E-value=0.0014 Score=68.48 Aligned_cols=290 Identities=14% Similarity=0.150 Sum_probs=153.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecC-CCccc-cChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceee
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-PHLMT-GSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip-~~~~~-~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (498)
+.|+|.-|.|.-|+++.+-.. .+..+. ...+ +++.. .+-.+=++|=.+.|.+++++++... .+...+|
T Consensus 3 ~il~inpgststk~a~~~~~~---~~~~~~---~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~----~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDEK---PIFEET---LRHSAEELEKFKTIIDQYEFRKQAILDFLKEHGIDL----SELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEcCCc---eeeeec---cccCHHHHhcCCCccchHHHHHHHHHHHHHHcCCCh----hcceEEE
Confidence 589999999999999995321 233221 2222 12211 1222346777788889998876431 1112221
Q ss_pred eEeeeeeee--cc---CCceEEEccCCccccCCCCCCcHHHHHHHHHHH-cCCCeeEEEEEec-----------------
Q 010895 174 FTFSFPVRQ--TS---IASGDLIKWTKGFSIEDTVGEDVVGELTKAMER-IGLDMRVAALVND----------------- 230 (498)
Q Consensus 174 ftFSfP~~q--~~---i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~-~~l~v~vvaivND----------------- 230 (498)
.- ...+.. .+ ++...+-.-.+. .+..-=.++..++-..+.+ .++| +++.|+
T Consensus 73 ~R-gG~~~~v~gG~~~v~~~~~~~l~~~--~~~~~~~nl~~~~a~~~~~~~~~p---~~v~D~~~~~~~~~~a~~~~lp~ 146 (358)
T PRK03011 73 GR-GGLLKPIPGGTYRVNEAMLEDLKNG--KYGEHASNLGAIIAYEIAKELGIP---AFIVDPVVVDEMEPVARISGLPE 146 (358)
T ss_pred Ec-CCCCcccCCCCEEcCHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHhcCCC---EEEECCcccccCCHHHHHcCCCC
Confidence 11 111110 00 111111111100 0111123455555555543 4777 477888
Q ss_pred ---------hHHHHhcccc-----c--CCCcEEEEEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCC
Q 010895 231 ---------TIGTLAGGRY-----H--NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLP 294 (498)
Q Consensus 231 ---------Tvatlla~ay-----~--~~~~~iglIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp 294 (498)
++--.++..| + +....|.+.+|||+.+|.+.+.+.+....+...+...| .+=+|..
T Consensus 147 i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~gai~~Gk~idgs~g~agEG~~~--~~R~G~l------ 218 (358)
T PRK03011 147 IERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISVGAHRKGRVIDVNNALDGEGPFS--PERAGGL------ 218 (358)
T ss_pred cceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCceeeEEECCEEEecCCccCCCCCcc--cCcccCc------
Confidence 4444444444 2 23488999999999999999888776655533221111 1112222
Q ss_pred CccccccccccCCCCCcceeeeccccccHHHHHHHHHHHHHhccCCCCCCCCCCcCCCCccCchhhhccccCCCCChHHH
Q 010895 295 LTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVV 374 (498)
Q Consensus 295 ~T~~D~~~D~~s~nPG~q~fEkm~SG~YLgEi~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~ 374 (498)
.|+ ...+.+-+|.|=.+- +...+.+.+.+.. + .. +.+ .
T Consensus 219 -------------~~~-~~~~~~~~g~~s~~~---l~~~l~~~~Gl~~----------~----------~g--s~d---~ 256 (358)
T PRK03011 219 -------------PVG-DLVELCFSGKYTKEE---LKKKLVGKGGLVA----------Y----------LG--TND---A 256 (358)
T ss_pred -------------CcH-HHHHHHhcCCCCHHH---HHHHHHhccCccc----------c----------cC--CCC---H
Confidence 111 122333444442111 1112222222211 0 00 112 2
Q ss_pred HHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCcCCCCCceEEEEEeceEecccHhHHHH
Q 010895 375 GKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLG--RDTVRDGEKQKSVIALDGGLFEHYTKFSAC 452 (498)
Q Consensus 375 ~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~--~~~~~~~~~~~~~I~idGsv~~~~p~f~~~ 452 (498)
+++++. ++..+..|+.++++.++.+|-+|++++..++ + + .|.+.||+.+ .+.+++.
T Consensus 257 reV~~~-----------a~~GD~~A~~ald~~~~~lak~I~~l~~~L~gdp--------D--~IVlgGGI~~-~~~l~~~ 314 (358)
T PRK03011 257 REVEKR-----------IEEGDEKAKLVYEAMAYQIAKEIGAMAAVLKGKV--------D--AIVLTGGLAY-SKRLVER 314 (358)
T ss_pred HHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------C--EEEEeCcccc-CHHHHHH
Confidence 333332 1222367889999999999999999999993 4 3 5789999987 8999999
Q ss_pred HHHHHHHHhCcCCCccEEEEEcCChhH
Q 010895 453 MQSTVKELLGEEVSETVVIEHSNDGSG 479 (498)
Q Consensus 453 l~~~l~~l~~~~~~~~i~l~~~~Dgs~ 479 (498)
+++.++.+ ..+.+.+++++.-
T Consensus 315 I~~~l~~~------~pv~i~p~~~e~~ 335 (358)
T PRK03011 315 IKERVSFI------APVIVYPGEDEME 335 (358)
T ss_pred HHHHHHhh------CCeEEEeCCCHHH
Confidence 99999865 2477787766543
No 30
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.019 Score=58.01 Aligned_cols=182 Identities=20% Similarity=0.258 Sum_probs=107.5
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeE
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGft 175 (498)
..|+=|+||||.|+++|...... ..+ + +.+...+ |.-+.+.|++|+.++.. ..+..--|.
T Consensus 7 p~LvgDIGGTnaRfaLv~~a~~~--~~~-------~-~~~~~~d----ypsle~av~~yl~~~~~------~~~~~a~~A 66 (320)
T COG0837 7 PRLVGDIGGTNARFALVEIAPAE--PLQ-------A-ETYACAD----YPSLEEAVQDYLSEHTA------VAPRSACFA 66 (320)
T ss_pred ceEEEecCCcceEEEEeccCCCC--ccc-------c-ceecccC----cCCHHHHHHHHHHHhhc------cCccceEEE
Confidence 45666999999999999885431 111 1 2222122 34466667777776621 224557777
Q ss_pred eeeeeeeccCCceEEE--ccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccccC-----------
Q 010895 176 FSFPVRQTSIASGDLI--KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----------- 242 (498)
Q Consensus 176 FSfP~~q~~i~~g~Li--~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~----------- 242 (498)
.-.|+.- +.-.+. +|. .+. +-|.+.| +++ =+.++||=.|..++-....
T Consensus 67 iAgPv~g---d~v~lTN~~W~----------~s~-~~~r~~L---gl~--~v~liNDF~A~A~Ai~~l~~~dl~qigg~~ 127 (320)
T COG0837 67 IAGPIDG---DEVRLTNHDWV----------FSI-ARMRAEL---GLD--HLSLINDFAAQALAIPRLGAEDLEQIGGGK 127 (320)
T ss_pred EecCccC---CEEeeecCccc----------ccH-HHHHHhc---CCC--cEEEechHHHHHhhccccCHHHHHHhcCCC
Confidence 7888852 111111 454 112 2333444 664 2689999999888776521
Q ss_pred --CCcEEEEEE--ccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCcccccccccc-CCCCCcceeeec
Q 010895 243 --KDAIAAVIL--GTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDTE-SLNPGEQIFEKI 317 (498)
Q Consensus 243 --~~~~iglIl--GTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~~-s~nPG~q~fEkm 317 (498)
++.-+ .|+ |||-+.|+..+.. .+-..+-+|.|.-+ .-|+|+-|..|=+. ..+-|.-.-|..
T Consensus 128 ~~~~a~~-avlGPGTGLGVa~Lv~~~-----------~~w~~lp~EGGHvd--f~P~~~~E~~i~~~l~~~~GrVS~Er~ 193 (320)
T COG0837 128 PEPNAPR-AVLGPGTGLGVAGLVPNG-----------GGWIPLPGEGGHVD--FAPRSEREFQILEYLRARFGRVSAERV 193 (320)
T ss_pred CCCCCce-EEEcCCCCcceEEEEecC-----------CeeEeccCCCcccc--CCCCCHHHHHHHHHHHHhcCccchhhh
Confidence 22222 345 5555778777532 23577888888543 34788777766421 223455677999
Q ss_pred cccccHHHHHHHH
Q 010895 318 ISGMYLGEIVRRV 330 (498)
Q Consensus 318 ~SG~YLgEi~R~i 330 (498)
.||+-|-.|-|-+
T Consensus 194 LSG~GL~~iY~al 206 (320)
T COG0837 194 LSGPGLVNLYRAL 206 (320)
T ss_pred cccccHHHHHHHH
Confidence 9999997776654
No 31
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=96.96 E-value=0.0035 Score=61.65 Aligned_cols=61 Identities=16% Similarity=0.357 Sum_probs=44.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCC---CccccChhHHHHHHHHHHHHHHHhcC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP---HLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~---~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
+||+||+|.|++|+++++.+|+ ++...+..++... ....-+.+++++.+.+++++.+++.+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~---iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 64 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK---IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAG 64 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC---EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEEcccceEEEEEeCCCC---EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcC
Confidence 5899999999999999997665 5554443333222 12234689999999999999998764
No 32
>PRK13318 pantothenate kinase; Reviewed
Probab=96.75 E-value=0.0023 Score=63.91 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=31.9
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcC
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
+|+||+|||++|+++++ +++ +.. .+++|+... .+.++++++ +.++++.++
T Consensus 2 iL~IDIGnT~iK~al~d-~g~---i~~----~~~~~t~~~-~~~~~~~~~----l~~l~~~~~ 51 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGK---LVA----HWRISTDSR-RTADEYGVW----LKQLLGLSG 51 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCE---EEE----EEEEeCCCC-CCHHHHHHH----HHHHHHHcC
Confidence 68999999999999998 442 442 255666543 244555544 455555443
No 33
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.58 E-value=0.59 Score=50.92 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHH
Q 010895 402 VATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIG 481 (498)
Q Consensus 402 V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iG 481 (498)
+..+...-.|-+.-.|+..+.... - +--+|-+-||. .++|.+.+.+-+.. .+.+.+..+++...+|
T Consensus 406 lY~a~l~a~A~GtR~Iie~~~~~g---~--~Id~l~~sGG~-~KN~llmql~aDvt--------g~~v~i~~s~~a~llG 471 (544)
T COG1069 406 LYRALLEATAFGTRAIIETFEDQG---I--AIDTLFASGGI-RKNPLLMQLYADVT--------GRPVVIPASDQAVLLG 471 (544)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcC---C--eeeEEEecCCc-ccCHHHHHHHHHhc--------CCeEEeecccchhhhH
Confidence 334455566778888888876521 1 11257788888 99999988877754 3468888999999999
Q ss_pred HHHHHHHhc
Q 010895 482 AALLAASHS 490 (498)
Q Consensus 482 AAi~Aa~~~ 490 (498)
+|+.+|+++
T Consensus 472 sAm~~avAa 480 (544)
T COG1069 472 AAMFAAVAA 480 (544)
T ss_pred HHHHHHHHh
Confidence 999999876
No 34
>PRK00976 hypothetical protein; Provisional
Probab=96.21 E-value=0.016 Score=59.54 Aligned_cols=76 Identities=24% Similarity=0.243 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEc
Q 010895 395 VVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS 474 (498)
Q Consensus 395 ~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~ 474 (498)
.+..|..++++.++.+|.+|++++..++| + .|.++||+.+..+. .+.+.+++.+.+. ...+.
T Consensus 236 GD~~A~~aid~~~~~LA~~IAnLi~llDP--------e--~IVLGGGVS~~~e~---~L~~~I~e~l~~~-----~a~LG 297 (326)
T PRK00976 236 GDEKAKLAIDTLALFVAMEIASLLLLNPE--------D--NVVLAGSVGEMDEP---DVSERIKELLDKK-----VLVLG 297 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C--EEEEcCccccCchh---HHHHHHHHHhccc-----ccccC
Confidence 34678899999999999999999999987 3 58899999865422 3555555544331 34578
Q ss_pred CChhHHHHHHHHHH
Q 010895 475 NDGSGIGAALLAAS 488 (498)
Q Consensus 475 ~Dgs~iGAAi~Aa~ 488 (498)
+|++.+|||.+|--
T Consensus 298 ~dAGaiGAA~iA~~ 311 (326)
T PRK00976 298 KESAAIGLALIARD 311 (326)
T ss_pred CchHHHHHHHHHHH
Confidence 99999999998753
No 35
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.18 E-value=0.02 Score=61.87 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=52.7
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEEeeeeeec--C-CCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeee
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGf 174 (498)
|+||+|.|++|+++++++|+ ++.+.+..++. | +.....+.+++++.+++++++++++.+.. ..+...+|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~----~~~I~gIgv 73 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEM----GQDIKGIGI 73 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCC----cccEEEEEE
Confidence 58999999999999998775 66444333321 1 11112457889999999999999876542 234566777
Q ss_pred E--eeeee
Q 010895 175 T--FSFPV 180 (498)
Q Consensus 175 t--FSfP~ 180 (498)
+ .+.++
T Consensus 74 s~~~~g~v 81 (481)
T TIGR01312 74 SGQMHGLV 81 (481)
T ss_pred ecCCceeE
Confidence 7 66666
No 36
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.77 E-value=0.032 Score=60.84 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=44.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeec--CCC-ccccChhHHHHHHHHHHHHHHHhcCC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEGE 160 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (498)
++|+||+|+|++|+++++.+|+ ++...+..++. |.. ....+.+++|+.+.+++++.+++.+.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~ 66 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGI 66 (493)
T ss_pred eEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999998775 55444333322 211 11235788999999999999987653
No 37
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.77 E-value=0.035 Score=61.37 Aligned_cols=73 Identities=18% Similarity=0.333 Sum_probs=49.6
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeec--CC-CccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceee
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (498)
+|+||+|+|+.|+++++.+|+ ++...+..++. |. .....+.+++++-+.+++++.+++.+.. ..+...+|
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~----~~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVD----PNSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCC----hhheEEEE
Confidence 799999999999999998775 55444333432 22 1223468889999999999999876532 12344555
Q ss_pred eEe
Q 010895 174 FTF 176 (498)
Q Consensus 174 ftF 176 (498)
++.
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 554
No 38
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.66 E-value=0.043 Score=60.01 Aligned_cols=61 Identities=13% Similarity=0.299 Sum_probs=43.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeee--cCCC-ccccChhHHHHHHHHHHHHHHHhcC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~--ip~~-~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
++|+||+|+|++|+++++.+|+ ++...+.+++ .|.. ....+.+++++.+.+++++.+++..
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGK---IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred CEEEEeccccceEEEEEcCCCC---EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998765 5554433333 1111 1224578899999999999987643
No 39
>PRK13321 pantothenate kinase; Reviewed
Probab=95.54 E-value=0.017 Score=57.56 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=32.1
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHH
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAK 153 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~ 153 (498)
+|+||+|||++|+++++ +++ +.. .+++|+... .+.+++++.+.+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~---i~~----~~~~~T~~~-~~~~~~~~~l~~l~~~ 49 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDR---LLR----SFRLPTDKS-RTSDELGILLLSLFRH 49 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCE---EEE----EEEEecCCC-CCHHHHHHHHHHHHHH
Confidence 68999999999999998 332 442 256676644 2456666666554443
No 40
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.53 E-value=0.044 Score=59.81 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=44.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeee--cCCC-ccccChhHHHHHHHHHHHHHHHhcCC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEGE 160 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~--ip~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (498)
++|+||+|+|++|+++++.+|+ ++...+..++ .|.. ....+.+++++-+.+++++.+++.+.
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~ 70 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGI 70 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999998775 5544333343 2221 11236888999999999999977553
No 41
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.48 E-value=0.051 Score=59.71 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=44.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecC-----CCccccChhHHHHHHHHHHHHHHHhcC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-----PHLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip-----~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
++|+||+|.|+.|+++++.+|+ ++...+..++.+ .....-+.+++++.+.+++++.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999998775 554443344322 111223688999999999999987654
No 42
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.35 E-value=0.052 Score=59.86 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=46.1
Q ss_pred eEEEEEeCCceEEEEEEE-eCCCcceeEEEeeeeee-------cC-------CCccccChhHHHHHHHHHHHHHHHhcC
Q 010895 96 LFYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVS-------IP-------PHLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~-l~g~~~~~~~~~~~~~~-------ip-------~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
++|+||+|.|+.|+++++ .+|+ ++...+..++ .| .....-+++++++-+++++++.+++.+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999 7775 5544444454 23 223344688999999999999998764
No 43
>PRK15027 xylulokinase; Provisional
Probab=95.29 E-value=0.067 Score=58.23 Aligned_cols=60 Identities=18% Similarity=0.406 Sum_probs=44.9
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeec--C-CCccccChhHHHHHHHHHHHHHHHhc
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATE 158 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (498)
.||+||+|.|++|+++++.+|+ ++...+..+++ | .....-+.+++++.+.+++++.+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~---vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE---VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC---EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999998775 66555445543 2 11223457889999999999998764
No 44
>PRK10331 L-fuculokinase; Provisional
Probab=94.91 E-value=0.098 Score=56.70 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=43.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeee--c--CC-CccccChhHHHHHHHHHHHHHHHhc
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--I--PP-HLMTGSSHELFDYIAAALAKFVATE 158 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~--i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (498)
.+|+||+|.|+.|+++++.+|+ ++...+..++ + |. ....-+.+++++.+.+++++.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999998775 5544433332 1 11 1122367889999999999998753
No 45
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.74 E-value=0.13 Score=56.34 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=44.4
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeec--C-CCccccChhHHHHHHHHHHHHHHHhcC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
.+|+||+|.|++|+++++.+|+ ++...+..++. | ......+.+++|+-+++++++.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999998775 55444333432 1 112224578899999999999987654
No 46
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.11 Score=56.85 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=45.6
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCC---ccccChhHHHHHHHHHHHHHHHhcC
Q 010895 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH---LMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~---~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
-+||+||+|.|+.|+.+++.++. .++......+..... ....+.++++..+.++|++.+++..
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~~~--~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~ 69 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDEDGG--EVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESK 69 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCCCC--eEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcc
Confidence 37999999999999999999842 255443323332211 1234689999999999999998864
No 47
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=94.69 E-value=4.3 Score=43.16 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCccceeEEEEEeCCceEEEEEEE
Q 010895 90 TGDEKGLFYALDLGGTNFRVLRVQ 113 (498)
Q Consensus 90 tG~E~G~~LaiDlGGTnlRv~~V~ 113 (498)
.+..+|.+++||+|+|+.++.+++
T Consensus 139 ~~~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 139 RERQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred hhccCCEEEEEEcChhheeeEEEc
Confidence 356678999999999999999986
No 48
>PLN02295 glycerol kinase
Probab=94.33 E-value=0.15 Score=55.83 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=45.2
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeec--CC-CccccChhHHHHHHHHHHHHHHHhcCC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGE 160 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (498)
.+|+||+|.|++|+++++.+|+ ++...+..+++ |+ ....-+.+++|+-+.++|++.+++.+.
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999998775 55444333432 21 122346889999999999999987653
No 49
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=94.17 E-value=0.16 Score=54.96 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=42.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeec----C-CCccccChhHHHHHHHHHHHHHHHh
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI----P-PHLMTGSSHELFDYIAAALAKFVAT 157 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~i----p-~~~~~~~~~~lfd~Ia~~I~~fl~~ 157 (498)
.+|+||+|.|+.|+++++.+|+ ++...+.+++. | .....-+.+++|+.+.+++++.+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999998765 55444333331 1 1122236788999999999999864
No 50
>PRK04123 ribulokinase; Provisional
Probab=94.16 E-value=0.19 Score=55.64 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=43.7
Q ss_pred eEEEEEeCCceEEEEEEEe-CCCcceeEEEeeeeeec--------CCC-ccccChhHHHHHHHHHHHHHHHhcCC
Q 010895 96 LFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSI--------PPH-LMTGSSHELFDYIAAALAKFVATEGE 160 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l-~g~~~~~~~~~~~~~~i--------p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (498)
++|+||+|.|+.|+++++. +|+ ++...+..++. |.. ...-+.+++++-+.+++++.+++.+.
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~ 75 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGV 75 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999995 775 54444333431 111 12234778999999999999876543
No 51
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=93.41 E-value=1.5 Score=49.76 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccccC----CCcEEEEEEccCc
Q 010895 206 DVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAAVILGTGT 255 (498)
Q Consensus 206 dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~----~~~~iglIlGTGt 255 (498)
.=.+.+.+|.+..|+++ +.|+|+.+|+.++..+.. +...+=+=+|-||
T Consensus 154 ~qR~a~~~Aa~~AGl~v--~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT 205 (653)
T PTZ00009 154 SQRQATKDAGTIAGLNV--LRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGT 205 (653)
T ss_pred HHHHHHHHHHHHcCCce--eEEecchHHHHHHHhhhccCCCCCEEEEEECCCCe
Confidence 34566777777778774 899999999999866432 3344444466666
No 52
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=93.39 E-value=6.1 Score=43.91 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccccCC---CcEEEEEEccCc-eeeEE
Q 010895 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK---DAIAAVILGTGT-NAAYV 260 (498)
Q Consensus 205 ~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~~---~~~iglIlGTGt-Na~yi 260 (498)
..=.+.+.+|.+..|+++ +.++|+.+|+.++..+... ...+=+=+|-|+ .++.+
T Consensus 148 ~~qr~~~~~Aa~~agl~~--~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~ 205 (602)
T PF00012_consen 148 DEQRQALRDAAELAGLNV--LRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVV 205 (602)
T ss_dssp HHHHHHHHHHHHHTT-EE--EEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEE
T ss_pred hhhhhccccccccccccc--ceeecccccccccccccccccccceeccccccceEeeeeh
Confidence 334677888888888864 7899999999887554322 233333356665 34444
No 53
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=91.20 E-value=1.6 Score=47.67 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=62.9
Q ss_pred ceeEEEEEeCCceEEEEEEEe-CCCcceeEEEeee----eeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 010895 94 KGLFYALDLGGTNFRVLRVQL-GGREGRVVKQEFE----EVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l-~g~~~~~~~~~~~----~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~ 168 (498)
...+++||+|-|..|+++++- +++ .+....+ .++.+ ....-++.+++.-+.+||+...+.-... .
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e---~l~~~~~~i~~~~~~~-~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~ 74 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGE---LLSLAQKEITQEFPKE-GWVEQDPKEIWQAVCRCIEKACEKLGVL------N 74 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCc---cceeeeeeeeeecCCC-CeEEeCHHHHHHHHHHHHHHHHHhhccc------c
Confidence 457999999999999999983 333 2221111 12222 2334578999999999999987765432 2
Q ss_pred cceeeeEeeeeeeeccCCceEEEccCCccccCC
Q 010895 169 QRELGFTFSFPVRQTSIASGDLIKWTKGFSIED 201 (498)
Q Consensus 169 ~~~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~ 201 (498)
.-..|.+.+.-+.| ....+-|.|....+.
T Consensus 75 ~~~~~~~~igv~~q----r~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 75 IKVVGATCIGVVNQ----REGSVLWNKRTGEPL 103 (516)
T ss_pred ccccccEEEEEEec----CCceEEeecCCCCcc
Confidence 45567888988887 234447887765554
No 54
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=90.69 E-value=7.6 Score=44.17 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+.++|+-+++|.-..+--+|. .-+-.. ..-.. +|-++||. ..|..++.+++.+.. . .+.-
T Consensus 322 R~efe~l~~~l~~r~~~~v~~~L~----~a~~~~---~dId~-VvLVGGss--riP~V~~~l~~~fg~----~---~~~~ 384 (657)
T PTZ00186 322 RSKFEGITQRLIERSIAPCKQCMK----DAGVEL---KEIND-VVLVGGMT--RMPKVVEEVKKFFQK----D---PFRG 384 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCCh---hhCCE-EEEECCcc--cChHHHHHHHHHhCC----C---cccc
Confidence 556667788888887776655543 222100 11122 46677775 788888888776532 1 1222
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
.-.+..-.+|||+.|++.+.
T Consensus 385 ~nPdeaVA~GAAi~a~~l~~ 404 (657)
T PTZ00186 385 VNPDEAVALGAATLGGVLRG 404 (657)
T ss_pred CCCchHHHHhHHHHHHHhcc
Confidence 23456778899999987654
No 55
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=90.29 E-value=2.4 Score=39.79 Aligned_cols=76 Identities=22% Similarity=0.182 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCC
Q 010895 397 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 476 (498)
Q Consensus 397 ~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~D 476 (498)
.++++|++=-|.-..-.+-.+-+..+.. .+ .|.+.||.. +.|.+.+.+-+.+. ..|.....++
T Consensus 122 ~~~rAv~Egia~~~~~~~~~l~~~~~~~------~~--~i~~~GG~~-~n~~~~q~~Advl~--------~~V~~~~~~e 184 (198)
T PF02782_consen 122 DLARAVLEGIAFSLRQILEELEELTGIP------IR--RIRVSGGGA-KNPLWMQILADVLG--------RPVVRPEVEE 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSC------ES--EEEEESGGG-GSHHHHHHHHHHHT--------SEEEEESSST
T ss_pred HHHHHHHHhHHHHHHHhhhhcccccccc------ce--eeEeccccc-cChHHHHHHHHHhC--------CceEeCCCCc
Confidence 4455555544444444444443332431 12 356677777 99999998877653 3566666799
Q ss_pred hhHHHHHHHHHHh
Q 010895 477 GSGIGAALLAASH 489 (498)
Q Consensus 477 gs~iGAAi~Aa~~ 489 (498)
++.+|||++|+++
T Consensus 185 ~~a~GaA~~A~~a 197 (198)
T PF02782_consen 185 ASALGAALLAAVA 197 (198)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhh
Confidence 9999999999875
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=88.95 E-value=1.1 Score=44.43 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=32.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
++|+||+|.|+.|+++++ +++ ++... +. +. +..++-+++.+.+.+++.+
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~---il~~~---~~-~~-------~~~~~~~~~~l~~~~~~~~ 49 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGK---VIGYK---WL-DT-------TPVIEETARAILEALKEAG 49 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCE---EEEEE---Ee-cC-------CCCHHHHHHHHHHHHHHcC
Confidence 378999999999999997 553 55332 22 21 2245666777777776544
No 57
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=88.87 E-value=34 Score=36.11 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=58.5
Q ss_pred CccceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcc
Q 010895 91 GDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (498)
Q Consensus 91 G~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~ 170 (498)
+...+.+|+||.|-|+.++.+++-++. +... |-.++. +. .. -.+.+.+.+++-+.. ..+..
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d~~~---I~~~----~~~~t~---g~--p~---~~~~l~~~le~l~~~----~~~I~ 191 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMEDGKE---ILYG----FYVSTK---GR--PI---AEKALKEALEELGEK----LEEIL 191 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeCCCe---EEEE----EEEcCC---CC--hh---HHHHHHHHHHHcccC----hheee
Confidence 444568999999999999999876442 4422 333332 12 22 245556666554321 11223
Q ss_pred eeeeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcccccCCCcE
Q 010895 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAI 246 (498)
Q Consensus 171 ~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~~~~~ 246 (498)
.+|+| ..+ + .++..+| +.+ .++|-+++...+..|..|+..
T Consensus 192 ~~~~T----------------GYG----------R---~~v~~~~---~aD----~~~~Ei~ah~kgA~~f~p~~d 231 (396)
T COG1924 192 GLGVT----------------GYG----------R---NLVGAAL---GAD----KVVVEISAHAKGARYFAPDVD 231 (396)
T ss_pred eeeee----------------ccc----------H---HHhhhhh---cCC----cceeeeehhHHHHHHhCCCCc
Confidence 33332 222 2 2344445 555 677899999999999877666
No 58
>PLN02669 xylulokinase
Probab=88.54 E-value=1.7 Score=48.41 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=41.1
Q ss_pred cCCCCccceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeec--CCCc----cccChh----------HHHHHHHHH
Q 010895 87 NLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPHL----MTGSSH----------ELFDYIAAA 150 (498)
Q Consensus 87 ~~PtG~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~i--p~~~----~~~~~~----------~lfd~Ia~~ 150 (498)
++|.+ .+||+||+|.|++|+++++.+|+ ++...+..+.. |..- ...+.+ .+++-+..+
T Consensus 3 ~~~~~---~~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPED---SLFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCCC---CeEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 46643 37999999999999999998775 55544434431 1111 011223 455889999
Q ss_pred HHHHH
Q 010895 151 LAKFV 155 (498)
Q Consensus 151 I~~fl 155 (498)
+++..
T Consensus 77 l~~l~ 81 (556)
T PLN02669 77 LQKLA 81 (556)
T ss_pred HHHHH
Confidence 99876
No 59
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=88.24 E-value=29 Score=36.25 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHHcCCCeeEEEEEechHHHHhccccc--CCCcEEEEEEccCc-eeeEEc
Q 010895 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYVE 261 (498)
Q Consensus 205 ~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~--~~~~~iglIlGTGt-Na~yie 261 (498)
++....+.++++..|+++ ..++++..|+..+.... .+...+-+=+|.|+ +.+.+.
T Consensus 157 ~~~v~~~~~~~~~aGl~~--~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~ 214 (371)
T TIGR01174 157 STILRNLVKCVERCGLEV--DNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYT 214 (371)
T ss_pred HHHHHHHHHHHHHcCCCe--eeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEE
Confidence 456677777887777764 77889999888764332 12344555577776 555554
No 60
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=86.95 E-value=1.5 Score=47.32 Aligned_cols=85 Identities=22% Similarity=0.361 Sum_probs=63.3
Q ss_pred ceeEEEEEeCCceEEEEEEEeCCCcceeEEEee----eeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 010895 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEF----EEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQ 169 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~----~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~ 169 (498)
..++++||-|-|+.|..+++-+|+ ++...+ +.|+-|.-+. .++.+++.-...++.+.+.+.++. ..+.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~---iva~~q~e~~Q~yP~~GWVE-hDp~eIw~~~~~~l~~a~~~~~i~----~~~i 75 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGN---IVAIAQREFTQIYPQPGWVE-HDPLEIWASVRSVLKEALAKAGIK----PGEI 75 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCC---chhhhhhhhhhhCCCCCccc-cCHHHHHHHHHHHHHHHHHHcCCC----ccce
Confidence 468999999999999999988776 322221 2355555444 579999999999999999887654 4567
Q ss_pred ceeeeEeeeeeeeccCCceEEEccCC
Q 010895 170 RELGFTFSFPVRQTSIASGDLIKWTK 195 (498)
Q Consensus 170 ~~lGftFSfP~~q~~i~~g~Li~wtK 195 (498)
-.+|+| +| +.+.+-|.|
T Consensus 76 aaIGIT-----NQ----RETtvvWdk 92 (499)
T COG0554 76 AAIGIT-----NQ----RETTVVWDK 92 (499)
T ss_pred EEEEee-----cc----ceeEEEEeC
Confidence 888887 44 566667876
No 61
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=86.48 E-value=1.4 Score=47.63 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=37.6
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeE-EEeeeeeecCCCc---cccChhHHHHHHHHHHHHHHH
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVV-KQEFEEVSIPPHL---MTGSSHELFDYIAAALAKFVA 156 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~-~~~~~~~~ip~~~---~~~~~~~lfd~Ia~~I~~fl~ 156 (498)
||||+|.|+.|+.+++.++.+.++. ...++..+...+. ..-+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 6899999999999999975423344 2222221111111 112466899999999998865
No 62
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=83.81 E-value=9.5 Score=39.30 Aligned_cols=62 Identities=19% Similarity=0.371 Sum_probs=40.1
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
.++|||+|.+++|++.++..++..++... ...++|.+......-.=.+-+++.|.+.+++.+
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~--~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~ 65 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEHY--AVEPLPAGIFTEGHIVEYQAVAEALKELLSELG 65 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEEE--EEEECCCCcccCCCccCHHHHHHHHHHHHHHcC
Confidence 68999999999999988865544344432 346677665432211113556777888777765
No 63
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=82.75 E-value=19 Score=36.07 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=61.8
Q ss_pred CCCccceeEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 010895 89 PTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (498)
Q Consensus 89 PtG~E~G~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~ 168 (498)
|.-+..+.+++||+|-|++|+.+.+..++ .+..- ...+..++.+.-.+ ++-....|+.+++....... .+
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~~---~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~g---~~ 87 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAGA---LEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKLG---RE 87 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEEE---eccccccCCCEEee-HHHHHHHHHHHHHHHHHHhC---CC
Confidence 33446778999999999999888765443 22211 11222233332111 55566667776653210000 01
Q ss_pred cceeeeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHHhcc
Q 010895 169 QRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG 238 (498)
Q Consensus 169 ~~~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~vvaivNDTvatlla~ 238 (498)
...+ ..+.|..++. .+ ...+.+++++.|+++ ..++++..|+..+.
T Consensus 88 i~~v--~~~vp~~~~~--------------------~~-~~~~~~~~~~aGl~~--~~ii~e~~A~a~~~ 132 (267)
T PRK15080 88 LTHA--ATAIPPGTSE--------------------GD-PRAIINVVESAGLEV--THVLDEPTAAAAVL 132 (267)
T ss_pred cCeE--EEEeCCCCCc--------------------hh-HHHHHHHHHHcCCce--EEEechHHHHHHHh
Confidence 1112 2255544321 11 223557777778875 67899999887653
No 64
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=80.65 E-value=78 Score=33.11 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=33.5
Q ss_pred EEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEE----EcCChhHHHHHHHHH
Q 010895 435 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE----HSNDGSGIGAALLAA 487 (498)
Q Consensus 435 ~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~----~~~Dgs~iGAAi~Aa 487 (498)
.|.+.|++. ..|.|.+.+.+.+.++.+-. ...+. .+++ +..|||++|-
T Consensus 263 ~IilSGr~~-~~~~~~~~l~~~l~~~~~~~---v~~l~~~~~~aKe-aA~GaAiIA~ 314 (343)
T PF07318_consen 263 EIILSGRFS-RIPEFRKKLEDRLEDYFPVK---VRKLEGLARKAKE-AAQGAAIIAN 314 (343)
T ss_pred EEEEecccc-ccHHHHHHHHHHHHhhcccc---eeecccccccchh-hhhhHHHHhh
Confidence 377888886 88999999999998876521 11111 1354 6779999985
No 65
>PRK13324 pantothenate kinase; Reviewed
Probab=79.28 E-value=10 Score=37.94 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=30.6
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCC-CccccChhHHHHHHHHHH
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAAAL 151 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~-~~~~~~~~~lfd~Ia~~I 151 (498)
+|+||+|-||+++++.+ ++ ++.. .+.+++ +.. .+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~~----~~r~~t~~~~-~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIVS----QIRYATSSVD-STSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEEE----EEEEecCccc-cchHHHHHHHHHHH
Confidence 68999999999999997 22 2432 366776 443 45666666655433
No 66
>PRK13410 molecular chaperone DnaK; Provisional
Probab=76.95 E-value=5.7 Score=45.29 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+..+|.-++.|...++-.+|. ..+-.. .... -+|-++||. ..|..++.+++.+ +... ...+
T Consensus 297 R~~FE~l~~~l~~r~~~~i~~~L~----~ag~~~---~dId-~VvLVGGss--RiP~V~~~l~~~f----g~~~--~~~~ 360 (668)
T PRK13410 297 RKQFESLCGDLLDRLLRPVKRALK----DAGLSP---EDID-EVVLVGGST--RMPMVQQLVRTLI----PREP--NQNV 360 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCCh---hhCc-EEEEECCcc--ccHHHHHHHHHHc----CCCc--ccCC
Confidence 555667788888887766655442 222100 1112 246667764 6888887777754 3211 1112
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
-.+..-.+|||+.|+..+.
T Consensus 361 -npdeaVA~GAAi~aa~ls~ 379 (668)
T PRK13410 361 -NPDEVVAVGAAIQAGILAG 379 (668)
T ss_pred -CCchHHHHhHHHHHHhhcc
Confidence 2355778899999987654
No 67
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=76.43 E-value=5.9 Score=45.08 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+.++|+-++.|...++--+|. ..+-.. ..-. -.+-++||- ..|..++.+++.+. .... ..+
T Consensus 336 R~efe~l~~~l~~~~~~~i~~~L~----~a~~~~---~~i~-~ViLvGGss--riP~v~~~l~~~f~----~~~~--~~~ 399 (663)
T PTZ00400 336 RAKLEELTHDLLKKTIEPCEKCIK----DAGVKK---DELN-DVILVGGMT--RMPKVSETVKKIFG----KEPS--KGV 399 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCCH---HHCc-EEEEECCcc--CChHHHHHHHHHhC----CCcc--cCC
Confidence 455567777777776666555443 222100 0112 246666765 77888887777653 2111 111
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
-.+..-..|||+.|++.+.
T Consensus 400 -npdeaVA~GAAi~aa~l~~ 418 (663)
T PTZ00400 400 -NPDEAVAMGAAIQAGVLKG 418 (663)
T ss_pred -CCccceeeccHHHHHhhcC
Confidence 2345567799999987653
No 68
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.40 E-value=8.7 Score=39.72 Aligned_cols=119 Identities=18% Similarity=0.320 Sum_probs=78.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCC-----CC----
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHV-----SP---- 166 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~-----~~---- 166 (498)
..+|||+|-+.+++.-.+-.|+..++. +....++|.+.+..+.-.=.+-+++.|++.+.+++..... +.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe--~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLE--KYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeee--eeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 478999999999988777555544443 3335789988875443334677889999988887654210 00
Q ss_pred CC-----------------cceeeeEeeeeeeeccCCceE-------------EEccCCccccCCCCCCcHHHHHHHHHH
Q 010895 167 GR-----------------QRELGFTFSFPVRQTSIASGD-------------LIKWTKGFSIEDTVGEDVVGELTKAME 216 (498)
Q Consensus 167 ~~-----------------~~~lGftFSfP~~q~~i~~g~-------------Li~wtKgF~~~~~~G~dv~~lL~~al~ 216 (498)
.+ ....+--+|||++.-+++=-. ++.-|+ +++++...++++
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~Atr---------kE~v~~ri~a~~ 159 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATR---------KEVVESRIDAFE 159 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEee---------hhhhHHHHHHHH
Confidence 00 023456789999876654333 333343 789999999999
Q ss_pred HcCCCeeEE
Q 010895 217 RIGLDMRVA 225 (498)
Q Consensus 217 ~~~l~v~vv 225 (498)
..|+...|+
T Consensus 160 ~AGl~~~vl 168 (354)
T COG4972 160 LAGLEPKVL 168 (354)
T ss_pred HcCCCceEE
Confidence 999875443
No 69
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=74.24 E-value=5.9 Score=44.68 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+..+|.-++.|...++-.+| ...+-.. ..-.. ++-++||. ..|..++.+++.+.. .. ...+
T Consensus 297 r~efe~l~~~l~~~~~~~i~~~L----~~a~~~~---~~i~~-ViLvGGss--riP~v~~~l~~~fg~----~~--~~~~ 360 (616)
T PRK05183 297 REQFNALIAPLVKRTLLACRRAL----RDAGVEA---DEVKE-VVMVGGST--RVPLVREAVGEFFGR----TP--LTSI 360 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCc---ccCCE-EEEECCcc--cChHHHHHHHHHhcc----Cc--CcCC
Confidence 55666777788888766654443 2222110 11122 45566665 788888777776532 11 1111
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
-.+..-..|||+.|+..+.
T Consensus 361 -npdeaVA~GAAi~a~~l~~ 379 (616)
T PRK05183 361 -DPDKVVAIGAAIQADILAG 379 (616)
T ss_pred -CchHHHHHHHHHHHHHhcc
Confidence 2456678899999987654
No 70
>CHL00094 dnaK heat shock protein 70
Probab=73.17 E-value=7.9 Score=43.67 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+.++|.-+..|....+-.+|..- .+.+. .-.. .+-++|| ...|..++.+++.+.. .. ...+
T Consensus 297 R~~fe~l~~~l~~~~~~~i~~~L~~a--~~~~~-----~i~~-ViLvGGs--sriP~v~~~l~~~fg~----~~--~~~~ 360 (621)
T CHL00094 297 RAKFEELCSDLINRCRIPVENALKDA--KLDKS-----DIDE-VVLVGGS--TRIPAIQELVKKLLGK----KP--NQSV 360 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCChh-----hCcE-EEEECCc--cCChHHHHHHHHHhCC----Cc--CcCC
Confidence 45555677777777665554444321 11110 1122 4666776 4888888888886532 11 1112
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
-.+..-..|||+.|++.+.
T Consensus 361 -~pdeava~GAA~~aa~ls~ 379 (621)
T CHL00094 361 -NPDEVVAIGAAVQAGVLAG 379 (621)
T ss_pred -CchhHHHhhhHHHHHHhcC
Confidence 2355778899999987663
No 71
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=73.05 E-value=34 Score=37.63 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=37.0
Q ss_pred EEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhccc
Q 010895 435 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 492 (498)
Q Consensus 435 ~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~~~ 492 (498)
++.++||+. ++|.|.+...+.+. ..|.+-..-|..++|||++|++++..
T Consensus 417 ~L~~~GG~s-~N~ll~Q~~ADi~g--------~pv~~p~~~e~~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 417 TLRVCGGLS-KNPLLMQLQADILG--------LPVVRPQDVEAVALGAAMLAGAASGK 465 (516)
T ss_pred eeeeccccc-cCHHHHHHHHHHhC--------CccccccchhHHHHHHHHHHHhhcCC
Confidence 588899985 78888888777542 24555455667999999999998865
No 72
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=72.85 E-value=14 Score=36.66 Aligned_cols=174 Identities=17% Similarity=0.221 Sum_probs=90.4
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcce-eee
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE-LGF 174 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~-lGf 174 (498)
.-+|||+|||=.+|..-....+ +. .|.+-++ .+-+++.+|++..|++..+.... +-.... =|=
T Consensus 19 ~~vaiDiGGtLaKvv~sp~~sn--rl------~F~t~eT---~kId~~ve~l~~li~~h~k~C~~-----~~~liatGGg 82 (342)
T COG5146 19 MKVAIDIGGTLAKVVQSPSQSN--RL------TFKTEET---KKIDQVVEWLNNLIQQHEKLCLT-----KITLIATGGG 82 (342)
T ss_pred EEEEEecCceeeeeeeCccccc--ce------eeehHhh---hhHHHHHHHHHHHHHHHHhhhhh-----eeeEEecCCc
Confidence 3589999999988765211111 11 2333322 34678889988877775432110 000000 011
Q ss_pred EeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHH--cCCCeeEEEEEechHHHHhc----ccccCCCcEEE
Q 010895 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMER--IGLDMRVAALVNDTIGTLAG----GRYHNKDAIAA 248 (498)
Q Consensus 175 tFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~--~~l~v~vvaivNDTvatlla----~ay~~~~~~ig 248 (498)
.|-|- -++.|.|+++ +.-.+-.+.|..-|.- .++|-+ |.+.||..+-.+. +.+.+-...+-
T Consensus 83 a~kfy-----------d~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~e-vFv~~d~~~e~~~~~~~~~~h~lypyil 149 (342)
T COG5146 83 AYKFY-----------DRMSKQLDIK-VIRENEMEILINGLNYFVINIPAE-VFVEFDAASEGLGILLKEQGHDLYPYIL 149 (342)
T ss_pred chhhH-----------HHHhhhccce-eeecchHHHHHhcccceeeeccHH-Heeeeccccchhhhhhhhccccccceee
Confidence 11110 1456666665 4444444444443311 012212 5788988665443 33445567788
Q ss_pred EEEccCceeeEEcccCccccccCCCCCCCcEEEeccCCCcCCCCCCCccccccccc
Q 010895 249 VILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALDT 304 (498)
Q Consensus 249 lIlGTGtNa~yie~~~~i~k~~~~~~~~~~miIN~EwG~f~~~~lp~T~~D~~~D~ 304 (498)
+-+|+|+-.-|+...+......+.. -.|- |=||... ---+.|.||..+|-
T Consensus 150 vNiGsGvSilkvtgpsqf~RvGGss-lGGG----tlwGLls-Llt~a~~ydqmld~ 199 (342)
T COG5146 150 VNIGSGVSILKVTGPSQFERVGGSS-LGGG----TLWGLLS-LLTQATDYDQMLDM 199 (342)
T ss_pred EeccCCeEEEEecCcchhccccccc-cCcc----hHHHHHH-HHcccccHHHHHHH
Confidence 8999999888876655544433321 1111 2355331 01278899998884
No 73
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=69.30 E-value=40 Score=31.62 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=33.3
Q ss_pred EEEEEeCCceEEEEEEEeCCCc-ceeEEEeeeeeecCCC-ccccChhHHHHHHHHHHHHHHHhc
Q 010895 97 FYALDLGGTNFRVLRVQLGGRE-GRVVKQEFEEVSIPPH-LMTGSSHELFDYIAAALAKFVATE 158 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~-~~~~~~~~~~~~ip~~-~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (498)
|.+||+|-|++++...+..+++ .++... -..|.. +.+|.-.+ .+-++++|++.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~----~~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGV----GEVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEE----EEecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 5799999999999999886432 334422 223544 33333222 344556666665543
No 74
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=68.74 E-value=7.2 Score=44.03 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+..+|+-++.|....+--.|. ..+... ..-. .++-++||. ..|..++.+++.+ +... ...+
T Consensus 295 R~~fe~l~~~l~~~~~~~i~~~l~----~a~~~~---~~id-~ViLvGGss--riP~v~~~l~~~f----g~~~--~~~~ 358 (627)
T PRK00290 295 RAKFEELTEDLVERTIEPCKQALK----DAGLSV---SDID-EVILVGGST--RMPAVQELVKEFF----GKEP--NKGV 358 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCCh---hhCc-EEEEECCcC--CChHHHHHHHHHh----CCCC--CcCc
Confidence 455566777777776655544432 222110 1112 235566665 6888888887765 3211 1112
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
-.+..-..|||+.|++.+.
T Consensus 359 -npdeava~GAa~~aa~l~~ 377 (627)
T PRK00290 359 -NPDEVVAIGAAIQGGVLAG 377 (627)
T ss_pred -CChHHHHHhHHHHHHHhcC
Confidence 2456778899999987653
No 75
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=67.30 E-value=17 Score=36.04 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=31.8
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHH
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAAL 151 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I 151 (498)
|+||+|-||+++++.+- + ++.. .|++|++.. .+.+++..++...+
T Consensus 2 L~iDiGNT~i~~g~~~~-~---~~~~----~~r~~t~~~-~t~de~~~~l~~~~ 46 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG-N---KVYQ----FWRLATNLM-KTYDEHSEFLKELF 46 (243)
T ss_pred EEEEECCCcEEEEEEEC-C---EEEE----EEEecCCCc-cChHHHHHHHHHHH
Confidence 78999999999999972 2 2442 378887776 46777766654433
No 76
>PLN03184 chloroplast Hsp70; Provisional
Probab=66.26 E-value=13 Score=42.54 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+.++|.-++.|....+-.+| ...+... ..-. .++-++||. ..|..++.+++.+ +.. ....+
T Consensus 334 R~~fe~l~~~l~~r~~~~i~~~L----~~a~~~~---~dId-~ViLvGGss--riP~V~~~i~~~f----g~~--~~~~~ 397 (673)
T PLN03184 334 RAKFEELCSDLLDRCKTPVENAL----RDAKLSF---KDID-EVILVGGST--RIPAVQELVKKLT----GKD--PNVTV 397 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh---hHcc-EEEEECCcc--ccHHHHHHHHHHh----CCC--ccccc
Confidence 45566777778887666555444 2222210 0112 246667765 6888888877765 321 11222
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
-.+..-..|||+.|++.+.
T Consensus 398 -npdeaVA~GAAi~aa~ls~ 416 (673)
T PLN03184 398 -NPDEVVALGAAVQAGVLAG 416 (673)
T ss_pred -CcchHHHHHHHHHHHHhcc
Confidence 2466778899999987654
No 77
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=63.97 E-value=35 Score=37.29 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCC
Q 010895 397 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 476 (498)
Q Consensus 397 ~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~D 476 (498)
.++++|.+=-|+.+...+-.+.+..+.. .+ .|.+.||.. +.+.+.+.+.+.+. ..|.+....+
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g~~------~~--~i~~~GGga-~s~~w~Qi~Adv~g--------~pv~~~~~~e 436 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMGDP------LN--MIQATGGFA-SSEVWRQMMSDIFE--------QEIVVPESYE 436 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC------Cc--EEEEecCcc-cCHHHHHHHHHHcC--------CeeEecCCCC
Confidence 4555666655555555555555544431 12 244555544 77888888877652 3566656778
Q ss_pred hhHHHHHHHHHHhc
Q 010895 477 GSGIGAALLAASHS 490 (498)
Q Consensus 477 gs~iGAAi~Aa~~~ 490 (498)
++.+|||++|+++.
T Consensus 437 ~~a~GaA~la~~~~ 450 (505)
T TIGR01314 437 SSCLGACILGLKAL 450 (505)
T ss_pred cchHHHHHHHHHhc
Confidence 99999999998765
No 78
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=63.81 E-value=83 Score=35.23 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+..+|+-+++|...++--.| +..+... ..-. .++-++||- ..|..++.+++.+. ... ...+
T Consensus 293 r~~fe~l~~~l~~~~~~~i~~~l----~~a~~~~---~~i~-~V~LvGGss--riP~v~~~i~~~f~----~~~--~~~~ 356 (595)
T TIGR02350 293 RAKFEELTADLVERTKEPVRQAL----KDAGLSA---SDID-EVILVGGST--RIPAVQELVKDFFG----KEP--NKSV 356 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCH---hHCc-EEEEECCcc--cChHHHHHHHHHhC----Ccc--cCCc
Confidence 55556777777777666655444 2222110 0111 235566665 68888888877653 211 1112
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
-.+..-..|||+.||+.+.
T Consensus 357 -~pdeava~GAa~~aa~l~~ 375 (595)
T TIGR02350 357 -NPDEVVAIGAAIQGGVLKG 375 (595)
T ss_pred -CcHHHHHHHHHHHHHHhcC
Confidence 2355677899999987653
No 79
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=62.80 E-value=1.2e+02 Score=29.75 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCeeEEEEEechHHHHhcc
Q 010895 209 GELTKAMERIGLDMRVAALVNDTIGTLAGG 238 (498)
Q Consensus 209 ~lL~~al~~~~l~v~vvaivNDTvatlla~ 238 (498)
+.+.++++.-|+++ +.++|+.+|+.++.
T Consensus 78 ~a~~~a~~~aGl~~--~~li~ep~Aaa~~~ 105 (239)
T TIGR02529 78 KVIVNVIESAGIEV--LHVLDEPTAAAAVL 105 (239)
T ss_pred HHHHHHHHHcCCce--EEEeehHHHHHHHh
Confidence 45667777778765 79999999988763
No 80
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=59.71 E-value=1.5e+02 Score=33.44 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+.++|+-+++|.-.++--.+ +..++ ..-.. .|-++||. ..|..++.+++.+ +.. ....+
T Consensus 279 r~efe~l~~~l~~~~~~~i~~~L----~~a~~-----~~Id~-ViLvGGss--riP~v~~~l~~~f----~~~--~~~~~ 340 (595)
T PRK01433 279 KQTLEQLILPLVERTINIAQECL----EQAGN-----PNIDG-VILVGGAT--RIPLIKDELYKAF----KVD--ILSDI 340 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhcCc-----ccCcE-EEEECCcc--cChhHHHHHHHHh----CCC--ceecC
Confidence 44555677777777665544433 22221 11122 35566665 6787777777654 321 11112
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 010895 472 EHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~ 490 (498)
-.+..-..|||+.|+..+
T Consensus 341 -npdeaVA~GAAi~a~~l~ 358 (595)
T PRK01433 341 -DPDKAVVWGAALQAENLI 358 (595)
T ss_pred -CchHHHHHHHHHHHHHhh
Confidence 235677899999998754
No 81
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=59.54 E-value=49 Score=36.32 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCC
Q 010895 397 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 476 (498)
Q Consensus 397 ~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~D 476 (498)
.++++|++=-|......+-.+-+..+.. .+ .|.+.||. .+.+.+.+.+-+.+ + ..|......+
T Consensus 382 ~~~RAvlEgia~~~~~~l~~l~~~~g~~------~~--~i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~~~e 444 (520)
T PRK10939 382 TLFRALEENAAIVSACNLQQIAAFSGVF------PS--SLVFAGGG-SKGKLWSQILADVT----G----LPVKVPVVKE 444 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC------Cc--EEEEeCCc-ccCHHHHHHHHHhc----C----CeeEEecccC
Confidence 4555666655554444443332222321 12 24455663 57888888777754 2 3566666788
Q ss_pred hhHHHHHHHHHHhc
Q 010895 477 GSGIGAALLAASHS 490 (498)
Q Consensus 477 gs~iGAAi~Aa~~~ 490 (498)
++.+|||++|++..
T Consensus 445 ~~alGaA~lA~~~~ 458 (520)
T PRK10939 445 ATALGCAIAAGVGA 458 (520)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999998765
No 82
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=59.19 E-value=2.7e+02 Score=30.44 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCC
Q 010895 397 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 476 (498)
Q Consensus 397 ~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~D 476 (498)
.++++|.+=.|..++..+-.+.+..+.. .+ .|-+.||-. +++.+.+.+.+.+ + ..|......+
T Consensus 374 ~l~ravlEgva~~l~~~~~~l~~~~g~~-------~~-~i~~~GGga-rs~~w~Qi~Ad~~----g----~~v~~~~~~e 436 (502)
T COG1070 374 HLARAVLEGVAFALADGLEALEELGGKP-------PS-RVRVVGGGA-RSPLWLQILADAL----G----LPVVVPEVEE 436 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cc-EEEEECCcc-cCHHHHHHHHHHc----C----CeeEecCccc
Confidence 5677888888888888887776665652 12 244455554 5688888887764 2 2465555677
Q ss_pred hhHHHHHHHHHHhc
Q 010895 477 GSGIGAALLAASHS 490 (498)
Q Consensus 477 gs~iGAAi~Aa~~~ 490 (498)
++..|+|++++.+.
T Consensus 437 ~~a~g~A~~~~~~~ 450 (502)
T COG1070 437 AGALGGAALAAAAL 450 (502)
T ss_pred chHHHHHHHHHHHh
Confidence 77777777766554
No 83
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=58.46 E-value=2.1e+02 Score=29.20 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHHhcccc
Q 010895 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (498)
Q Consensus 208 ~~lL~~al~~~~l~v~vvaivNDTvatlla~ay 240 (498)
.+.+++++...|++. +.++|+.++++++...
T Consensus 114 r~~~~~~~~~ag~~~--~~li~ep~aaa~~~g~ 144 (333)
T TIGR00904 114 RRAVKESALSAGARE--VYLIEEPMAAAIGAGL 144 (333)
T ss_pred HHHHHHHHHHcCCCe--EEEecCHHHHHHhcCC
Confidence 455777787667664 8999999999987654
No 84
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=57.34 E-value=3.2e+02 Score=30.69 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHHhcccccC--CCcEEEEEEccCceeeEEc
Q 010895 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGTNAAYVE 261 (498)
Q Consensus 208 ~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~--~~~~iglIlGTGtNa~yie 261 (498)
.+.+.+|....|+++ +.++|+.+|++++-.+.. +..++=+=+|-||--+=+.
T Consensus 136 R~at~~A~~iaGl~v--lrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll 189 (579)
T COG0443 136 RQATKDAARIAGLNV--LRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLL 189 (579)
T ss_pred HHHHHHHHHHcCCCe--EEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEE
Confidence 345567777778876 799999999999877644 3333333367776444443
No 85
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=56.96 E-value=43 Score=34.58 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=36.4
Q ss_pred EEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCC
Q 010895 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (498)
Q Consensus 99 aiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (498)
|||+|-.++|+..++-.+++..+.. .-..++|........-.=.+.+++.|++.+++++.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~--~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~ 60 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEA--FASIPLPPGAISDGEIVDPEALAEALKELLKENKI 60 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEE--EEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT-
T ss_pred CeecCCCeEEEEEEEEcCCccEEEE--EEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 7999999999998888665444443 23577888765322112346678888888887654
No 86
>PRK13411 molecular chaperone DnaK; Provisional
Probab=56.30 E-value=33 Score=39.03 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+..+|.-++.|...++--+|. ..+-.. .... ..+-++||- ..|..++.+++.+.. ... ...+
T Consensus 296 R~~fe~l~~~l~~~~~~~i~~~L~----~a~~~~---~~id-~ViLvGGss--riP~v~~~l~~~f~~---~~~--~~~~ 360 (653)
T PRK13411 296 RAKFEELTKDLVEATIEPMQQALK----DAGLKP---EDID-RVILVGGST--RIPAVQEAIQKFFGG---KQP--DRSV 360 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCCH---HHCc-EEEEECCCC--CcchHHHHHHHHcCC---cCc--CCCC
Confidence 455667777788887666655443 222100 0012 245566665 778887777776521 110 1111
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
. .+..-..|||+.||+.+.
T Consensus 361 n-pdeaVA~GAAi~aa~l~~ 379 (653)
T PRK13411 361 N-PDEAVALGAAIQAGVLGG 379 (653)
T ss_pred C-chHHHHHHHHHHHHhhcC
Confidence 2 245667899999987653
No 87
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=56.22 E-value=25 Score=35.68 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=29.8
Q ss_pred EEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHH
Q 010895 435 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAA 483 (498)
Q Consensus 435 ~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAA 483 (498)
.|.+.|+....+|..++.+.++++-.- .+-+.++...--+.+|||
T Consensus 233 ~IvF~Gg~L~~~~~l~~~~~~~~~~~~----~~~ifp~h~~y~gAlGAa 277 (279)
T TIGR00555 233 RIVFIGSFLRNNQLLMKVLSYATNFWS----KKALFLEHEGYSGAIGAL 277 (279)
T ss_pred eEEEECCcccCCHHHHHHHHHHHhhcC----ceEEEECCcchHHHhhhc
Confidence 488899999999999999999876431 112333334444455554
No 88
>PRK13326 pantothenate kinase; Reviewed
Probab=55.86 E-value=29 Score=34.80 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=32.4
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHH
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 149 (498)
-.|+||+|-||+++++.+ ++ +++. .|+++++.. .+.++++.++..
T Consensus 7 ~~L~IDiGNT~ik~glf~-~~---~l~~----~~r~~t~~~-~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK-DN---KMQI----FCKLKTKLD-LSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEE-CC---EEEE----EEEeccCCC-CCHHHHHHHHhc
Confidence 479999999999999997 22 2442 377777654 467777776654
No 89
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=54.42 E-value=65 Score=35.22 Aligned_cols=46 Identities=26% Similarity=0.446 Sum_probs=32.1
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|.+.||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+++.
T Consensus 410 i~~~GG~a-~s~~w~Qi~Adv~----g----~pV~~~~~~e~~alGaAl~aa~a~ 455 (504)
T PTZ00294 410 LRVDGGLT-KNKLLMQFQADIL----G----KDIVVPEMAETTALGAALLAGLAV 455 (504)
T ss_pred EEEecccc-cCHHHHHHHHHHh----C----CceEecCcccchHHHHHHHHHhhc
Confidence 44566655 6777777777654 2 246555567789999999998765
No 90
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=54.17 E-value=72 Score=34.34 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=33.6
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhcc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
|-+.||. .+++.+.+.+.+.+. ..|......+++.+|||++|+...-
T Consensus 394 i~~~GG~-s~s~~~~Q~~Adv~g--------~pv~~~~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 394 IRLIGGG-AKSPAWRQMLADIFG--------TPVDVPEGEEGPALGAAILAAWALG 440 (481)
T ss_pred EEEeccc-cCCHHHHHHHHHHhC--------CceeecCCCcchHHHHHHHHHHhcC
Confidence 4455665 488888888777652 2455555778999999999987763
No 91
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=52.24 E-value=1.4e+02 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=16.9
Q ss_pred ceeEEEEEeCCceEEEEEEEeCC
Q 010895 94 KGLFYALDLGGTNFRVLRVQLGG 116 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g 116 (498)
.+.+||||+|--.+=+++.+..+
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCC
Confidence 35699999998877777665533
No 92
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=51.69 E-value=89 Score=31.25 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=30.6
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHH
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 149 (498)
+|.||+|-||+.+++.+ ++ .+.+ .|+++++.. .+.+|+..++.+
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~---~~~~----~~r~~t~~~-~~~del~~~~~~ 45 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GG---KVVQ----TWRLATEDL-LTEDELGLQLHN 45 (251)
T ss_pred eEEEEeCCCeEEEEEec-CC---eEEE----EEeeccccc-ccHHHHHHHHHH
Confidence 68999999999999987 23 2442 477877765 345666655543
No 93
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=50.96 E-value=45 Score=30.26 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=44.5
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEG 161 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~ 161 (498)
+..||+|=|+..++|++...++...+......++.+++.- +.+++=+|- ..+..|+++++.+
T Consensus 2 ~vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq-~~f~kl~~dy~Vd 63 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQ-FTFAKLMEDYKVD 63 (138)
T ss_pred eEEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHH-HHHHHHHHHcCCC
Confidence 3679999999999999998776556666666678887653 344554443 5577888888753
No 94
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=50.45 E-value=3e+02 Score=28.29 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCeeEEEEEechHHHHhcccccCCCcEEEEE--EccCc
Q 010895 209 GELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVI--LGTGT 255 (498)
Q Consensus 209 ~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~~~~~iglI--lGTGt 255 (498)
+.+.++++..|+++ +.++|+.+|++++......+..-+++ +|-|+
T Consensus 115 ~~l~~a~~~ag~~~--~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gt 161 (335)
T PRK13929 115 RAISDAVKNCGAKN--VHLIEEPVAAAIGADLPVDEPVANVVVDIGGGT 161 (335)
T ss_pred HHHHHHHHHcCCCe--eEeecCHHHHHHhcCCCcCCCceEEEEEeCCCe
Confidence 44556777667664 79999999999986443222222333 45554
No 95
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=50.25 E-value=45 Score=31.28 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=33.6
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhc
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATE 158 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (498)
|+||.||||-=+.+++-+.+ ++. ..+.|++ .+++..=|.+.+...+...
T Consensus 2 igIDvGGT~TD~v~~d~~~~---~~~----~~K~~Tt-----~~d~~~gi~~al~~l~~~~ 50 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTG---VVA----TAKVPTT-----PDDPAEGILEALDALLEES 50 (176)
T ss_pred eeEecCCCcEEEEEEeCCCC---EEE----EEEeCCC-----CcCHHHHHHHHHHhhhccc
Confidence 79999999999999987532 342 2456654 3456666777777766544
No 96
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=49.97 E-value=26 Score=39.36 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 471 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l 471 (498)
+..+.++|+-++.|....+--.| +..+... .... .++-++||. ..|..++.+++.+.. .. ...+
T Consensus 281 r~efe~l~~~ll~~i~~~i~~~L----~~a~~~~---~~id-~ViLvGGss--riP~V~~~l~~~f~~----~~--~~~~ 344 (599)
T TIGR01991 281 RDEFEALIQPLVQKTLSICRRAL----RDAGLSV---EEIK-GVVLVGGST--RMPLVRRAVAELFGQ----EP--LTDI 344 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh---hhCC-EEEEECCcC--CChHHHHHHHHHhCC----CC--CCCC
Confidence 45566777778887766655444 2222110 1112 235566665 788888888876532 11 1111
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 010895 472 EHSNDGSGIGAALLAASHSQ 491 (498)
Q Consensus 472 ~~~~Dgs~iGAAi~Aa~~~~ 491 (498)
-.+..-..|||+.|+..+.
T Consensus 345 -npdeaVA~GAai~a~~l~~ 363 (599)
T TIGR01991 345 -DPDQVVALGAAIQADLLAG 363 (599)
T ss_pred -CCcHHHHHHHHHHHHHhcc
Confidence 2456778899999987653
No 97
>PRK13320 pantothenate kinase; Reviewed
Probab=49.33 E-value=43 Score=33.20 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=16.3
Q ss_pred EEEEEeCCceEEEEEEE
Q 010895 97 FYALDLGGTNFRVLRVQ 113 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~ 113 (498)
+|+||+|.|+++.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999997
No 98
>PRK00047 glpK glycerol kinase; Provisional
Probab=49.28 E-value=82 Score=34.37 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=33.1
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|-+.||. .+.|.+.+.+-+.+. ..|......+++.+|||++|+++.
T Consensus 407 i~~~GGg-a~s~~w~Qi~ADvlg--------~pV~~~~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 407 LRVDGGA-VANNFLMQFQADILG--------VPVERPVVAETTALGAAYLAGLAV 452 (498)
T ss_pred EEEecCc-ccCHHHHHHHHHhhC--------CeeEecCcccchHHHHHHHHhhhc
Confidence 4445553 588999888877652 246554567889999999998775
No 99
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=48.13 E-value=2.7e+02 Score=32.25 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHH-hCcCCCccEE
Q 010895 392 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKEL-LGEEVSETVV 470 (498)
Q Consensus 392 ~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l-~~~~~~~~i~ 470 (498)
++.+.++|.-...|+..=+=-+| .+-+-.- .. =..+|-++|+. .-|...+-+++++.+- ++ +
T Consensus 333 Re~fEelc~Dl~~r~~~Pi~dAl----~~a~l~l---de-In~ViL~Gg~T--RVP~VQe~l~k~v~~~ei~-------k 395 (902)
T KOG0104|consen 333 REEFEELCADLEERIVEPINDAL----KKAQLSL---DE-INQVILFGGAT--RVPKVQETLIKAVGKEELG-------K 395 (902)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHH----HhcCCCh---hh-hheeEEecCcc--cCchHHHHHHHHHhHHHHh-------c
Confidence 55666888888888765443333 2222100 01 12346677775 6777777666666432 22 1
Q ss_pred EEEcCChhHHHHHHHHHHhcccc
Q 010895 471 IEHSNDGSGIGAALLAASHSQYL 493 (498)
Q Consensus 471 l~~~~Dgs~iGAAi~Aa~~~~~~ 493 (498)
..-++.+...||++-||--++.-
T Consensus 396 nlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 396 NLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred ccChhHHHHHHHHHHHHhhcccc
Confidence 23478899999999998766543
No 100
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=47.89 E-value=88 Score=33.80 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=31.9
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|-+.||- .+.|.+.+.+.+.+ + ..|......+++.+|||++|+++.
T Consensus 397 i~~~GGg-a~s~~w~Qi~Adv~----g----~pV~~~~~~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 397 LLLVGGG-SKNTLWNQIRANML----D----IPVKVVDDAETTVAGAAMFGFYGV 442 (465)
T ss_pred EEEecCc-cCCHHHHHHhhhhc----C----CeeEeccCCcchHHHHHHHHHHhc
Confidence 3344443 47888888777654 2 256555567889999999999876
No 101
>PRK04123 ribulokinase; Provisional
Probab=47.70 E-value=78 Score=35.01 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=33.8
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|.+.||...+.+.+.+.+-+.+ + ..|......+++.+|||++|+++.
T Consensus 442 i~~~GGg~s~s~~w~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 442 VIAAGGIARKNPVLMQIYADVL----N----RPIQVVASDQCPALGAAIFAAVAA 488 (548)
T ss_pred EEEeCCCcccCHHHHHHHHHhc----C----CceEecCccccchHHHHHHHHHHh
Confidence 5567776558888888777654 2 246555567899999999998754
No 102
>PRK03657 hypothetical protein; Validated
Probab=46.41 E-value=60 Score=30.50 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=40.5
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----ccce-eEEEEEeCCc
Q 010895 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGGT 105 (498)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~~PtG----~E~G-~~LaiDlGGT 105 (498)
.+.+|.+.|++ ++.....+|-+|..+..++++..--|-+.. |+| +..| .|++|...+.
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~ 135 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ 135 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc
Confidence 45688888877 788888888888766555677777776643 665 3456 5888876653
No 103
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=46.28 E-value=1e+02 Score=33.57 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=33.2
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|.+.||.. +++.+.+.+.+.+. ..|......+++.+|||++|+++.
T Consensus 403 i~~~GGga-~s~~w~Qi~ADv~g--------~pv~~~~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 403 LRVDGGMT-NNNLLMQFQADILG--------VPVVRPKVTETTALGAAYAAGLAV 448 (493)
T ss_pred EEEecccc-cCHHHHHHHHHhcC--------CeeEecCCCcchHHHHHHHHHhhc
Confidence 45566643 88888888887642 245554567899999999998765
No 104
>PRK10331 L-fuculokinase; Provisional
Probab=45.73 E-value=1e+02 Score=33.36 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=32.2
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|-+.||- .+.+.+.+.+.+.+. ..|+.....+++.+|||++|+++.
T Consensus 393 i~~~GGg-a~s~~w~Qi~Advlg--------~pV~~~~~~e~~a~GaA~la~~~~ 438 (470)
T PRK10331 393 LLLVGGG-SRNALWNQIKANMLD--------IPIKVLDDAETTVAGAAMFGWYGV 438 (470)
T ss_pred EEEEccc-ccCHHHHHHHHHhcC--------CeeEecCcccchHHHHHHHHHHhc
Confidence 3344443 488888888777652 246555567889999999998765
No 105
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=42.74 E-value=44 Score=34.16 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEE-E
Q 010895 393 KLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVV-I 471 (498)
Q Consensus 393 ~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~-l 471 (498)
+++.-||.+|.+|. +.++++.+.. + .|.+.||+ .++|.+++.+++.+.. .+. +
T Consensus 217 dI~aGl~~sia~rv--------~~~~~~~~i~-------~--~v~~~GGv-a~N~~l~~al~~~Lg~--------~v~~~ 270 (293)
T TIGR03192 217 MVIAAYCQAMAERV--------VSLLERIGVE-------E--GFFITGGI-AKNPGVVKRIERILGI--------KAVDT 270 (293)
T ss_pred HHHHHHHHHHHHHH--------HHHhcccCCC-------C--CEEEECcc-cccHHHHHHHHHHhCC--------CceeC
Confidence 36667999999983 3334444321 2 26789997 4788888888776521 222 1
Q ss_pred -EEcCChhHHHHHHHHH
Q 010895 472 -EHSNDGSGIGAALLAA 487 (498)
Q Consensus 472 -~~~~Dgs~iGAAi~Aa 487 (498)
....--+-+|||++|.
T Consensus 271 p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 271 KIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 1133456778888874
No 106
>PRK13317 pantothenate kinase; Provisional
Probab=41.42 E-value=23 Score=35.91 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=28.9
Q ss_pred EEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEE-EEEcCChhHHHHHHHH
Q 010895 435 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVV-IEHSNDGSGIGAALLA 486 (498)
Q Consensus 435 ~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~-l~~~~Dgs~iGAAi~A 486 (498)
.|.+.||-+.++|.+++.+.+.++.. ..++. .....--+-+|||+.+
T Consensus 225 ~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a 272 (277)
T PRK13317 225 NIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLA 272 (277)
T ss_pred eEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHh
Confidence 57789977779999988888765421 11222 2223345566777655
No 107
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=41.27 E-value=36 Score=36.39 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHH
Q 010895 393 KLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKE 459 (498)
Q Consensus 393 ~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~ 459 (498)
+++.-+|++|.+|.+.+ +.+..+.. + .|.+.||+. +++.+.+.+++.++.
T Consensus 358 DIaAGL~~SIA~Rv~s~--------l~r~~~i~------~--~VvftGGvA-~N~gvv~aLe~~L~~ 407 (432)
T TIGR02259 358 DILAGLHRAIILRAISI--------ISRSGGIT------D--QFTFTGGVA-KNEAAVKELRKLIKE 407 (432)
T ss_pred HHHHHHHHHHHHHHHHH--------HhcccCCC------C--CEEEECCcc-ccHHHHHHHHHHHcc
Confidence 45568888898887765 33442210 2 377899985 788888888887753
No 108
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=40.45 E-value=1.5e+02 Score=32.78 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=33.5
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|.+.||..-+.+.+.+.+.+.+ + ..|......+++.+|||++|+++.
T Consensus 439 i~~~GGg~a~s~~w~Qi~Adv~----g----~pV~~~~~~e~~a~GaA~lA~~~~ 485 (536)
T TIGR01234 439 LMAAGGIARKNPVIMQIYADVT----N----RPLQIVASDQAPALGAAIFAAVAA 485 (536)
T ss_pred EEEeCCccccCHHHHHHHHHhh----C----CeeEeccCCcchhHHHHHHHHHHc
Confidence 5566666457788888666654 2 356555567899999999998766
No 109
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.55 E-value=44 Score=38.20 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-CCCcceeecc--------cccCCC------------------CccceeEEEEEeCCce
Q 010895 54 KLRQVADAMTVEMHAGLASEG-GSKLKMLISY--------VDNLPT------------------GDEKGLFYALDLGGTN 106 (498)
Q Consensus 54 ~L~~i~~~f~~em~~gL~~~~-~s~l~MlPs~--------v~~~Pt------------------G~E~G~~LaiDlGGTn 106 (498)
.|..+.++|.+.+++-|...+ +..+.|+-|. ....|. |...|..+++|+|||+
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~g~~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTS 289 (674)
T COG0145 210 YLSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTS 289 (674)
T ss_pred eehHHHHHHHHHHHHHHHhcCCCceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcc
Confidence 677888888888888776532 1223333221 112232 5555569999999999
Q ss_pred EEEEEEEe
Q 010895 107 FRVLRVQL 114 (498)
Q Consensus 107 lRv~~V~l 114 (498)
.-++++.-
T Consensus 290 tDva~i~~ 297 (674)
T COG0145 290 TDVALIID 297 (674)
T ss_pred eeeeeeec
Confidence 99999864
No 110
>PRK15027 xylulokinase; Provisional
Probab=38.37 E-value=1.9e+02 Score=31.35 Aligned_cols=48 Identities=21% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCC-eeEEEEEechHHHHhcccccCCCcEEEEEEccCc
Q 010895 207 VVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGT 255 (498)
Q Consensus 207 v~~lL~~al~~~~l~-v~vvaivNDTvatlla~ay~~~~~~iglIlGTGt 255 (498)
++.+-.++=++-|++ +.|++-..|+.+.+++.--.+ ...+.+++||+.
T Consensus 209 ~G~l~~~~a~~~GL~~~pV~~g~~D~~aa~~g~g~~~-~g~~~~s~GTs~ 257 (484)
T PRK15027 209 TGALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVD-ANQAMLSLGTSG 257 (484)
T ss_pred cccccHHHHHHhCCCCCeEEecccHHHHHHhccCccc-CCcEEEEecCce
Confidence 343433333334764 667888899999999776433 456788899974
No 111
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=37.27 E-value=99 Score=27.63 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=38.6
Q ss_pred HHHHHHhhhcccc----hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC
Q 010895 19 AAALVVRRRMKST----GRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS 72 (498)
Q Consensus 19 ~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~ 72 (498)
+...++.++.++. +-.+.++++.+++- +-.++.++.+..+.+|...|++-|..
T Consensus 34 ~~s~~~~~~~~P~iV~FDmK~Tld~F~~Q~~-~~~lte~q~e~lt~rF~~aL~~~L~~ 90 (128)
T PRK13717 34 AVSYGIVRLNAPVTAAFNMKQTVDAFFDSAS-QKQLSEAQSKALSARFNTALEASLQA 90 (128)
T ss_pred HHHHHHhhcCCCeEEEEehHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666554 34445666666664 45689999999999999999999964
No 112
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=36.38 E-value=2.3e+02 Score=25.79 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=35.2
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (498)
++||||.|-+|+=.++++..++...++ .....+.+.+ .+..+=...|.+.|.++++++.
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~--~~g~i~t~~~---~~~~~rl~~I~~~l~~~i~~~~ 59 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYL--ASGVIRTSSD---APLPSRLKTIYDGLNEVIDQFQ 59 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEE--EeeEEECCCC---CCHHHHHHHHHHHHHHHHHHhC
Confidence 479999999999999998866432222 2122333322 1222334556677777776654
No 113
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=36.29 E-value=1.4e+02 Score=30.40 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=40.5
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccc-cC-hhHHHHHHHHHHHHHHHhc
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVATE 158 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~~ 158 (498)
|-+||+|-.++|..+.++.+...+++........+.+.+.. +. .++-.+.+.+++.+|.+..
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~ 65 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL 65 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999864333343333334556555422 12 3467778888888887643
No 114
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=35.87 E-value=1.1e+02 Score=30.09 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=24.5
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEE-cCChhHHHHHH
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH-SNDGSGIGAAL 484 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~-~~Dgs~iGAAi 484 (498)
|.+.||+.. +|.+.+.+.+.+ + ..+.+.. ....+-+|||+
T Consensus 207 Vvl~GGva~-n~~l~~~l~~~l----g----~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 207 IVFTGGVSK-NKGLVKALEKKL----G----MKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred EEEECcccc-CHHHHHHHHHHh----C----CcEEcCCCccHHHHHHHHh
Confidence 778888874 788888887765 2 1232221 22356677775
No 115
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=35.80 E-value=1.8e+02 Score=31.66 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCC
Q 010895 397 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 476 (498)
Q Consensus 397 ~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~D 476 (498)
.++++|++=-|.-..-.+-.+-...+.. .+ .|-+.||. .+.+.+.+.+.+.+. ..|.... .+
T Consensus 348 ~l~RAvlEgva~~~r~~l~~l~~~~g~~------~~--~i~~~GGg-a~s~~w~Qi~ADvlg--------~pV~~~~-~e 409 (471)
T PRK10640 348 ELARCIFDSLALLYADVLHELAQLRGEP------FS--QLHIVGGG-CQNALLNQLCADACG--------IRVIAGP-VE 409 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC------cc--eEEEECCh-hhhHHHHHHHHHHhC--------CCeeeCC-hh
Confidence 4566777766665555555543322321 12 24345554 577778777777652 2453322 46
Q ss_pred hhHHHHHHHHHHhc
Q 010895 477 GSGIGAALLAASHS 490 (498)
Q Consensus 477 gs~iGAAi~Aa~~~ 490 (498)
++.+|||++|+++.
T Consensus 410 a~alGaa~~a~~a~ 423 (471)
T PRK10640 410 ASTLGNIGIQLMTL 423 (471)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998765
No 116
>PLN02295 glycerol kinase
Probab=35.48 E-value=1.7e+02 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=33.3
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|.+.||. .+.|.+.+.+-+.+. ..|......+++.+|||++|+++.
T Consensus 416 i~~~GGg-a~s~~w~Qi~ADv~g--------~pV~~~~~~e~~alGaA~~A~~~~ 461 (512)
T PLN02295 416 LRVDGGA-TANNLLMQIQADLLG--------SPVVRPADIETTALGAAYAAGLAV 461 (512)
T ss_pred EEEeccc-hhCHHHHHHHHHhcC--------CceEecCccccHHHHHHHHHHhhc
Confidence 5556664 488888888877542 246554567899999999998775
No 117
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=35.28 E-value=1.9e+02 Score=29.60 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=17.4
Q ss_pred eeEEEEEeCCceEEEEEEE
Q 010895 95 GLFYALDLGGTNFRVLRVQ 113 (498)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~ 113 (498)
-.+++||+|-|+.++++++
T Consensus 32 m~~~GIDiGStt~K~Vlld 50 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC 50 (293)
T ss_pred cEEEEEEeCchhEEEEEEe
Confidence 3689999999999999997
No 118
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=35.10 E-value=34 Score=34.82 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.9
Q ss_pred ceeEEEEEeCCceEEEEEEEeCCC
Q 010895 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l~g~ 117 (498)
...|++||-|.||||+-+++-+|.
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg~ 27 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDGA 27 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCcc
Confidence 457999999999999999987764
No 119
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=34.22 E-value=6e+02 Score=27.07 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHHhcccccC--CCcEEEEEEccCc-eeeEEc
Q 010895 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (498)
Q Consensus 208 ~~lL~~al~~~~l~v~vvaivNDTvatlla~ay~~--~~~~iglIlGTGt-Na~yie 261 (498)
.+-+.+++++.|+++ ..++++..|+..+.-+.+ ....+-+=+|-|| +.+.+.
T Consensus 168 ~~~~~~a~~~aGl~v--~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~ 222 (420)
T PRK09472 168 AKNIVKAVERCGLKV--DQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYT 222 (420)
T ss_pred HHHHHHHHHHcCCeE--eeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEE
Confidence 444556666666665 677888888877654433 2334455567777 455554
No 120
>PRK10854 exopolyphosphatase; Provisional
Probab=33.95 E-value=1.6e+02 Score=32.38 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=44.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccc-cC-hhHHHHHHHHHHHHHHHh
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVAT 157 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~ 157 (498)
.|-+||+|-.++|..+++..++..+++....+...+.+.+.. +. .++-.+...+++..|.+.
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999865444455444444556555532 11 357888999999999764
No 121
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=31.94 E-value=93 Score=33.38 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=27.8
Q ss_pred EEeceE-ecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhH---HHHHHH
Q 010895 437 ALDGGL-FEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSG---IGAALL 485 (498)
Q Consensus 437 ~idGsv-~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~---iGAAi~ 485 (498)
.+.+-+ +.-.+...+.+.+++.+.+..+.. ..++...++... +|||+.
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~-~~~V~Vp~~pq~~GALGAAL~ 431 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYG-EVQINIDPDSIYTGALGASEF 431 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccC-CCeEecCCCccHHHHHHHHHh
Confidence 344444 445677788899999998875321 233333445544 455543
No 122
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=30.89 E-value=1.2e+02 Score=27.18 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=53.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCCCCCCCCCCcceeeeE
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGft 175 (498)
++||||+|-..+=+++-+-.+. +..-. -.|+. .+.+.+++.|.+.+.+ +. +-++-
T Consensus 2 riL~lD~G~kriGiAvsd~~~~---~a~pl---~~i~~----~~~~~~~~~l~~li~~----~~-----------i~~iV 56 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGI---IASPL---ETIPR----RNREKDIEELKKLIEE----YQ-----------IDGIV 56 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTS---SEEEE---EEEEE----CCCCCCHHHHHHHHHH----CC-----------ECEEE
T ss_pred eEEEEEeCCCeEEEEEecCCCC---eEeee---EEEEC----CCCchHHHHHHHHHHH----hC-----------CCEEE
Confidence 5899999998888887766443 22110 12222 1223455655554444 32 34566
Q ss_pred eeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHc--CCCeeEEEEEechHHHHhccc
Q 010895 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERI--GLDMRVAALVNDTIGTLAGGR 239 (498)
Q Consensus 176 FSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~--~l~v~vvaivNDTvatlla~a 239 (498)
+-.|.+.. |..-.|++ -+..+-+.|+++ ++|| .++|-.--|-.|..
T Consensus 57 vGlP~~~~----G~~~~~~~-----------~v~~f~~~L~~~~~~ipV---~~~DEr~TT~~A~~ 104 (135)
T PF03652_consen 57 VGLPLNMD----GSESEQAR-----------RVRKFAEELKKRFPGIPV---ILVDERLTTKEAER 104 (135)
T ss_dssp EEEEBBCT----SSC-CCHH-----------HHHHHHHHHHHHH-TSEE---EEEECSCSHHCCHC
T ss_pred EeCCcccC----CCccHHHH-----------HHHHHHHHHHHhcCCCcE---EEECCChhHHHHHH
Confidence 66677642 32223332 233444444443 7774 66776655555554
No 123
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=30.81 E-value=2.2e+02 Score=25.92 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=31.2
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHHhcCC
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (498)
.||||-|-++.-.++++..++.-..+.. ...+.+... +..+=...|.+.+.++++++.+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~--G~I~t~~~~---~~~~Rl~~I~~~l~~li~~~~P 59 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDY--GTIKTSSKD---SLPERLKEIYEELEELIEEYNP 59 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEE--EEEE---S-----HHHHHHHHHHHHHHHHHHH--
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEe--CeEECCCCC---CHHHHHHHHHHHHHHHHHhhCC
Confidence 5899999999999999996654333322 223333221 2223344566666666666653
No 124
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=30.69 E-value=1.2e+02 Score=29.01 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.7
Q ss_pred EEEEEeCCceEEEEEEEeC
Q 010895 97 FYALDLGGTNFRVLRVQLG 115 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~ 115 (498)
+|.||+|-|++++++++-+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 6899999999999999653
No 125
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=30.67 E-value=38 Score=35.03 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 010895 393 KLVVELCDIVATRGARLSAAGIVGILKKLGR 423 (498)
Q Consensus 393 ~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~ 423 (498)
....++|..|.+.+...++.++--+....+.
T Consensus 248 ~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~ 278 (318)
T TIGR03123 248 EDVRNLAKYYYEAQLEQLTEAIEEVLERYGL 278 (318)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3566888999998888888888877776554
No 126
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=29.91 E-value=2.7e+02 Score=30.73 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=33.9
Q ss_pred EEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 435 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 435 ~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
.|-+.||. .+.+.+.+.+-+.+ + ..|......+++.+|||++|++..
T Consensus 446 ~i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~~~e~~alGaA~lA~~~~ 492 (541)
T TIGR01315 446 SIFMSGGQ-CQNPLLMQLIADAC----D----MPVLIPYVNEAVLHGAAMLGAKAA 492 (541)
T ss_pred EEEEecCc-ccCHHHHHHHHHHH----C----CeeEecChhHHHHHHHHHHHHHhc
Confidence 35567775 47888888777754 2 256555677889999999998765
No 127
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=29.39 E-value=1.1e+02 Score=33.04 Aligned_cols=82 Identities=22% Similarity=0.254 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHH-HHhCcCC
Q 010895 387 TSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK-ELLGEEV 465 (498)
Q Consensus 387 ~~~~d~~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~-~l~~~~~ 465 (498)
.+..|.+.++ +|---+.+|+-.++++.+-.. .+-+ .|-+-|++ -.|-.. +.+++ -++++..
T Consensus 295 itq~DIr~~q--------lAKaAi~aGi~~Ll~~agi~~---~di~--~v~lAG~F-G~~l~~----~~a~~iGLlP~~~ 356 (412)
T PF14574_consen 295 ITQKDIREFQ--------LAKAAIRAGIEILLEEAGISP---EDID--RVYLAGGF-GNYLDP----ESAIRIGLLPDVP 356 (412)
T ss_dssp EEHHHHHHHH--------HHHHHHHHHHHHHHHHTT--G---GG----EEEEECSS--SEEEH----HHHHHTTSS--S-
T ss_pred EeHHHHHHHH--------HHHHHHHHHHHHHHHHcCCCH---HHcc--EEEEeCcc-cccCCH----HHHhhcCCCCCcc
Confidence 4566776655 233334567777888877421 1112 35567765 333332 23333 2345433
Q ss_pred CccEEEEEcCChhHHHHHHHHHH
Q 010895 466 SETVVIEHSNDGSGIGAALLAAS 488 (498)
Q Consensus 466 ~~~i~l~~~~Dgs~iGAAi~Aa~ 488 (498)
..+| +...++++.||..+..-
T Consensus 357 ~~kv--~~~GN~al~GA~~~Ll~ 377 (412)
T PF14574_consen 357 AEKV--RFVGNAALAGARMALLS 377 (412)
T ss_dssp GGGE--EEEC-HHHHHHHHHHHB
T ss_pred ccCE--EEECcHHHHHHHHHhCC
Confidence 3455 55689999999877543
No 128
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=29.16 E-value=2.7e+02 Score=29.90 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=29.9
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEEcCChhHHHHHHHHHHhc
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 490 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~~~Dgs~iGAAi~Aa~~~ 490 (498)
|-+.||- .+.+.+.+.+-+.+. ..|... .++++.+|||++|+++.
T Consensus 391 i~~~GGg-a~s~~w~Qi~ADvlg--------~pV~~~-~~e~~a~GaA~~a~~~~ 435 (454)
T TIGR02627 391 LHIVGGG-SQNAFLNQLCADACG--------IRVIAG-PVEASTLGNIGVQLMAL 435 (454)
T ss_pred EEEECCh-hhhHHHHHHHHHHhC--------CceEcC-CchHHHHHHHHHHHHhc
Confidence 3344443 477778777777552 245333 36689999999999876
No 129
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=28.83 E-value=1.3e+02 Score=22.89 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 010895 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHA 68 (498)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 68 (498)
+.++++++.+.+.|.++.+++++=...|..+|.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999998864
No 130
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=27.94 E-value=1.6e+02 Score=29.69 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEeceEecccHhHHHHHHHHHH
Q 010895 393 KLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK 458 (498)
Q Consensus 393 ~~~~~ia~~V~~RaA~l~Aa~iaai~~~~~~~~~~~~~~~~~~I~idGsv~~~~p~f~~~l~~~l~ 458 (498)
+++.-++++|.+|.+.+ +++.+... + .|.+.||+ -+++.+.+.+++.+.
T Consensus 188 dI~aGl~~sia~r~~~~--------~~~~~~~~------~--~v~~~GGv-a~n~~~~~~le~~l~ 236 (262)
T TIGR02261 188 NILKGIHESMADRLAKL--------LKSLGALD------G--TVLCTGGL-ALDAGLLEALKDAIQ 236 (262)
T ss_pred HHHHHHHHHHHHHHHHH--------HhccCCCC------C--cEEEECcc-cccHHHHHHHHHHhc
Confidence 45667888888876544 34444310 1 37789996 478888888888764
No 131
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=27.89 E-value=41 Score=34.85 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=18.4
Q ss_pred ceeEEEEEeCCceEEEEEEEe
Q 010895 94 KGLFYALDLGGTNFRVLRVQL 114 (498)
Q Consensus 94 ~G~~LaiDlGGTnlRv~~V~l 114 (498)
.+..|.+|+|||+..+++|.-
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCCEEEEEcCccceeeEEecC
Confidence 567999999999999999854
No 132
>PRK13317 pantothenate kinase; Provisional
Probab=27.65 E-value=4.3e+02 Score=26.69 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=18.5
Q ss_pred eeEEEEEeCCceEEEEEEEeCC
Q 010895 95 GLFYALDLGGTNFRVLRVQLGG 116 (498)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g 116 (498)
+..++||+|||..|++.++-++
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCC
Confidence 4689999999999999987643
No 133
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=27.10 E-value=1.9e+02 Score=26.31 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=17.4
Q ss_pred eeEEEEEeCCceEEEEEEEeCC
Q 010895 95 GLFYALDLGGTNFRVLRVQLGG 116 (498)
Q Consensus 95 G~~LaiDlGGTnlRv~~V~l~g 116 (498)
+.+||+|+|--.+=|++-+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4789999998888888766544
No 134
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=26.92 E-value=1.7e+02 Score=29.52 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=18.3
Q ss_pred eEEEEEeCCceEEEEEEEeCC
Q 010895 96 LFYALDLGGTNFRVLRVQLGG 116 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g 116 (498)
.|++||+|-|+.++.+++.++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~ 22 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDG 22 (262)
T ss_pred eEEEEEcCcccEEEEEEecCC
Confidence 479999999999999998644
No 135
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=26.77 E-value=2.5e+02 Score=30.84 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=43.1
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccc-cC-hhHHHHHHHHHHHHHHHhc
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVATE 158 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~~ 158 (498)
.+-+||+|-.++|..+++..++..+++....+...+...+.. +. .++-.+...+++..|.+.-
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~ 71 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERL 71 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999855433444433344556544432 21 3578888999999997643
No 136
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=24.31 E-value=1.3e+02 Score=26.38 Aligned_cols=44 Identities=16% Similarity=0.355 Sum_probs=29.7
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHH
Q 010895 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (498)
Q Consensus 97 ~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 149 (498)
|+|||+|-..+-+++++-.+. ... ...++.+. ....+|++|+..
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~---~~~----~~~~~~~~--~~~~~l~~~l~~ 44 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGE---KLR----RFKFENDP--AGLEKLLDWLAS 44 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCc---EEE----EEEEeccc--cchhHHhhhhcc
Confidence 799999999999999877662 221 24455433 234667777754
No 137
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=24.15 E-value=1.7e+02 Score=24.20 Aligned_cols=35 Identities=6% Similarity=0.167 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010895 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (498)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (498)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 5 QLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 55666666778999999999999999999999864
No 138
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=23.94 E-value=2.2e+02 Score=32.96 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=28.8
Q ss_pred EEEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEE---E-cCChhHHHHHHHHH
Q 010895 435 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE---H-SNDGSGIGAALLAA 487 (498)
Q Consensus 435 ~I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~---~-~~Dgs~iGAAi~Aa 487 (498)
.|++.|||+ .+..+++.+.+.+++. .-++.+. + .++|--+|.|++||
T Consensus 661 ~VvLSGGVf-qN~~L~~~L~~~L~~~-----g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 661 KIVISGGVF-YNRLLLERLAKYLKGL-----GFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred eEEEeccHH-HHHHHHHHHHHHHHhC-----CCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 588999998 5566777777766431 1122221 2 45556688877664
No 139
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.62 E-value=47 Score=37.90 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 010895 140 SHELFDYIAAALAKFVAT 157 (498)
Q Consensus 140 ~~~lfd~Ia~~I~~fl~~ 157 (498)
...|||||.+.|..-+.-
T Consensus 359 y~~lFD~lV~rvNkam~~ 376 (1106)
T KOG0162|consen 359 YARLFDWLVERVNKAMQA 376 (1106)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 457999999999998863
No 140
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=23.53 E-value=74 Score=32.29 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.6
Q ss_pred eEEEEEeCCceEEEEEEEeCC
Q 010895 96 LFYALDLGGTNFRVLRVQLGG 116 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g 116 (498)
..|.+|+|||+.-+++|. +|
T Consensus 78 ~~i~vDmGGTTtDi~~i~-~G 97 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK-DG 97 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE-TT
T ss_pred CEEEEeCCCCEEEEEEEE-CC
Confidence 589999999999999995 34
No 141
>PF13941 MutL: MutL protein
Probab=23.33 E-value=1.3e+02 Score=32.72 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=35.4
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHHHHHHHHHHHHHHH
Q 010895 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVA 156 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~ 156 (498)
.+|.+|+|.|.-|+.+|++.....+++-+ -.-|+++. + .++..-+-+++++.-+
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~----a~apTTv~--~-~Dv~~G~~~A~~~l~~ 54 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQ----AEAPTTVE--P-GDVTIGLNNALEQLEE 54 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEE----EeCCCCcC--c-ccHHHHHHHHHHHHHH
Confidence 48999999999999999965554555543 23566652 2 3455555566666443
No 142
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=23.23 E-value=88 Score=21.72 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=17.4
Q ss_pred CCCCCcceeeeccccccHHHHHHHHHHHH
Q 010895 306 SLNPGEQIFEKIISGMYLGEIVRRVLCRM 334 (498)
Q Consensus 306 s~nPG~q~fEkm~SG~YLgEi~R~il~~~ 334 (498)
++||.+|+.|-=-+..|+|-++=-++.-+
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vL 30 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVL 30 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHH
Confidence 57899999999999999998877666544
No 143
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=23.21 E-value=4.9e+02 Score=23.07 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=12.1
Q ss_pred EEEEeCCceEEEEEEEe
Q 010895 98 YALDLGGTNFRVLRVQL 114 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l 114 (498)
||||+|-..+=+++-+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 68999988666665443
No 144
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=22.88 E-value=5.2e+02 Score=23.92 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCC
Q 010895 96 LFYALDLGGTNFRVLRVQLGGR 117 (498)
Q Consensus 96 ~~LaiDlGGTnlRv~~V~l~g~ 117 (498)
++|+||-|-++.=.++++..++
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 5899999999999999988764
No 145
>PLN02669 xylulokinase
Probab=22.44 E-value=3.5e+02 Score=30.17 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=30.6
Q ss_pred HHcCCC--eeEEEEEechHHHHhcccccCCCcEEEEEEccCce
Q 010895 216 ERIGLD--MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTN 256 (498)
Q Consensus 216 ~~~~l~--v~vvaivNDTvatlla~ay~~~~~~iglIlGTGtN 256 (498)
++.|++ +.|++-.-|..+++++.--..+ ..+.+++||.+-
T Consensus 265 ~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~-g~~~~slGTs~~ 306 (556)
T PLN02669 265 QRFGFSSNCLVVQWSGDNPNSLAGLTLSTP-GDLAISLGTSDT 306 (556)
T ss_pred HHhCCCCCCEEEEecchHHHHHhccCCCCC-CeEEEEEcccce
Confidence 344874 6789999999999998875443 468899999753
No 146
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=22.16 E-value=1.9e+02 Score=24.16 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010895 37 AVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (498)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (498)
..++++.+.....++..+...+.+.|.++|.+.|...
T Consensus 5 k~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 5 KADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567777777788999999999999999999999864
No 147
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=21.99 E-value=1.9e+02 Score=24.01 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010895 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (498)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (498)
.++++.+.+...+|..+...+.+.|.++|.+.|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456667777778999999999999999999999864
No 148
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=21.84 E-value=1.3e+02 Score=31.35 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=37.0
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEE----cCChhHHHHHHHHHHh
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH----SNDGSGIGAALLAASH 489 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~----~~Dgs~iGAAi~Aa~~ 489 (498)
|.+.||. ...|+|.++++..|..+.++.. ++++.. ...++-+||+++|...
T Consensus 314 Ivl~GG~-S~i~G~~eRL~~eL~~~~~~~~--~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 314 IVLTGGS-SLIPGFKERLQQELRSLLPSST--KVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp EEEESGG-GGSTTHHHHHHHHHHHHSGTTS--TEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred eEEeccc-ccccchHHHHHHHhhhhhhccc--cceeccCchhhhhcccccceeeeccc
Confidence 4445554 5889999999999999866543 455554 4467899999998654
No 149
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=21.83 E-value=55 Score=31.97 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=17.7
Q ss_pred HHHHhcccccCCCcEEEEEEccC
Q 010895 232 IGTLAGGRYHNKDAIAAVILGTG 254 (498)
Q Consensus 232 vatlla~ay~~~~~~iglIlGTG 254 (498)
.|.|.|.+-+||++.||..++++
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~~ 95 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVDR 95 (230)
T ss_pred HHHHHHHhccCcccceeeEEEcC
Confidence 77888888889999999544444
No 150
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=21.64 E-value=2.1e+02 Score=23.16 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010895 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (498)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (498)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 466777777888999999999999999999999863
No 151
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=21.50 E-value=5.5e+02 Score=26.50 Aligned_cols=123 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEEeeeeeecCCCccccChhHH----------------------------------
Q 010895 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHEL---------------------------------- 143 (498)
Q Consensus 98 LaiDlGGTnlRv~~V~l~g~~~~~~~~~~~~~~ip~~~~~~~~~~l---------------------------------- 143 (498)
++||+|..++|++.-.-..- .+.+|+-+...+...-
T Consensus 4 iviD~Gs~~~k~G~~~~~~P----------~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d 73 (373)
T smart00268 4 IVIDNGSGTIKAGFAGEDEP----------QVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGLELKYPIEHGIVEN 73 (373)
T ss_pred EEEECCCCcEEEeeCCCCCC----------cEEccceeeEecccccccCCCcceEecchhhhcCCCceecCCCcCCEEeC
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcceeeeEeeeeeeeccCCceEEEccCCccccCCCCCCcHHHHHHHHHHHcCCCee
Q 010895 144 FDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR 223 (498)
Q Consensus 144 fd~Ia~~I~~fl~~~~~~~~~~~~~~~~lGftFSfP~~q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~~~~l~v~ 223 (498)
||-+...+...+.+.-.. .....|+=+|-+.-... ..-..+.+-.|+..++|-
T Consensus 74 ~~~~e~i~~~~~~~~l~~----~~~~~~vll~~p~~~~~----------------------~~r~~~~e~lfE~~~~~~- 126 (373)
T smart00268 74 WDDMEKIWDYTFFNELRV----EPEEHPVLLTEPPMNPK----------------------SNREKILEIMFETFNFPA- 126 (373)
T ss_pred HHHHHHHHHHHHhhhcCC----CCccCeeEEecCCCCCH----------------------HHHHHHHHHhhccCCCCe-
Q ss_pred EEEEEechHHHHhcccccCCCcEEEEEEccCceeeEEccc
Q 010895 224 VAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERA 263 (498)
Q Consensus 224 vvaivNDTvatlla~ay~~~~~~iglIlGTGtNa~yie~~ 263 (498)
+.++++.++++++..... |+|+--|.+.+.+-++
T Consensus 127 -v~~~~~~~~a~~~~g~~~-----~lVVDiG~~~t~v~pv 160 (373)
T smart00268 127 -LYIAIQAVLSLYASGRTT-----GLVIDSGDGVTHVVPV 160 (373)
T ss_pred -EEEeccHHHHHHhCCCCE-----EEEEecCCCcceEEEE
No 152
>PRK03661 hypothetical protein; Validated
Probab=21.46 E-value=2.9e+02 Score=25.65 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=37.5
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----ccce-eEEEEEeC
Q 010895 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLG 103 (498)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~~PtG----~E~G-~~LaiDlG 103 (498)
.+.+|.+.|++ ++..-..+|-+|.....++++..--|-+.. |+| +..| .|++|...
T Consensus 64 lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~ad~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~ 127 (164)
T PRK03661 64 MIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAG-PDGGSEEKPVGTVWFGFASA 127 (164)
T ss_pred HcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCCCCCCceEEEEEEEeC
Confidence 35688888877 777888888888765444666666666643 654 3456 57888653
No 153
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=21.35 E-value=3.6e+02 Score=25.19 Aligned_cols=67 Identities=27% Similarity=0.570 Sum_probs=45.3
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----ccce-eEEEEEeCCceEEEEEEEeCC
Q 010895 48 CGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGGTNFRVLRVQLGG 116 (498)
Q Consensus 48 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~MlPs~v~~~PtG----~E~G-~~LaiDlGGTnlRv~~V~l~g 116 (498)
+.++.+.|.+ +++.-.+||-.|...+.++++..=-|-+-. |+| ++.| .|+++.+||+. -+-.++++|
T Consensus 65 LgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~~~-~~~~~~~~g 139 (162)
T COG1546 65 LGVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGGEA-ITIRVNFGG 139 (162)
T ss_pred hCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCCce-EEEEEEcCC
Confidence 4678877754 788889999999877666777777777754 884 3456 58888885443 333444444
No 154
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=20.75 E-value=6.7e+02 Score=25.85 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=35.7
Q ss_pred EEEeceEecccHhHHHHHHHHHHHHhCcCCCccEEEEE---cCChhHHHHHHHHHH
Q 010895 436 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH---SNDGSGIGAALLAAS 488 (498)
Q Consensus 436 I~idGsv~~~~p~f~~~l~~~l~~l~~~~~~~~i~l~~---~~Dgs~iGAAi~Aa~ 488 (498)
|.+.||.. ..|+|.+++++.++.+++......+.+.. ...++-+||+++|..
T Consensus 293 Ivl~GG~s-~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 293 IVLSGGST-LFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EEEeCCcc-CCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 55666664 57999999999999887642112344433 355778899988865
No 155
>PRK13331 pantothenate kinase; Reviewed
Probab=20.46 E-value=1e+02 Score=30.83 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=18.6
Q ss_pred cceeEEEEEeCCceEEEEEEE
Q 010895 93 EKGLFYALDLGGTNFRVLRVQ 113 (498)
Q Consensus 93 E~G~~LaiDlGGTnlRv~~V~ 113 (498)
++-..|+||+|-||..+++.+
T Consensus 5 ~~~~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 5 TSNEWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCCcEEEEEeCCCcEEEEEEE
Confidence 445799999999999999997
No 156
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=20.05 E-value=2.1e+02 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 010895 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (498)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (498)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 356667777778999999999999999999999753
Done!