BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010896
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/409 (45%), Positives = 269/409 (65%), Gaps = 6/409 (1%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
+R+V+TG+G ++ G + F+ L G+SG+ PI RFDAS+ VR ++ D Y+
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYL 60
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K RRLD +Y L+A + ALE+A L P E++D R+G +VG+G+GG+ ++
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKP---EDLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 206 ALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRR 265
+++G +I+PFFIP I NM SA +A+ G GP+ ++ TACAT +A I+
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 266 GETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGILV 325
GE D+++AGGTEAAI P +G F RALS RNE P++ASRP+ RDGFVMGEG G+LV
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 326 MESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVNY 385
+E+ EHA KRGA I AE +G + DAHH+T+P +G G + +A++L+DAG++PE+V Y
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGY 297
Query: 386 VNAHATSTLAGDLAEVNAIKKVFKDTSEMKM-NGTKSMIXXXXXXXXXXEAITTIKAITT 444
+NAH TST GD AEV AIK+VF D ++ M + TKSMI EAI T++A+
Sbjct: 298 INAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYH 357
Query: 445 GWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G + PT+N ++ +PE+ +D VP ++ V+ A+SNSF FGGHN+V+ F
Sbjct: 358 GVIPPTINLEDPDPELDLDFVPE-PREAKVDYALSNSFAFGGHNAVLAF 405
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/414 (42%), Positives = 255/414 (61%), Gaps = 4/414 (0%)
Query: 85 KKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGY 144
KKR+V+TG+G ++ G+ + ++ L+EG +GI PI RFDAS + RFGG+++DF + +
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQF 65
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
+D K +R+D + + A ++A+ +A L V+ ++ IGV++G+G+GGL
Sbjct: 66 LDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQ 122
Query: 205 EALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
L+ KG + +PF IP I NM S L AI+ G GPN TACA + A ++
Sbjct: 123 TILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQ 182
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGIL 324
G M+ GGTEAAI P GF + RALS RN+ P ASRP+DKDRDGFVMGEG GIL
Sbjct: 183 NGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 242
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
++E LE A+ RGA I E +G A+TCDA+H+T P DG G + IA +L+D+G+ PE V+
Sbjct: 243 ILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVS 302
Query: 385 YVNAHATSTLAGDLAEVNAIKKVFKDTS-EMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
Y+NAH TST A D+ E AIK+ + + + ++ TKSM EA+ T+ AI
Sbjct: 303 YINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIA 362
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPFS 497
+ PT+N +N +PE +D VP + V+VA+SNSFGFGGHN + F +
Sbjct: 363 EDKVPPTINLENPDPECDLDYVPGQSRALIVDVALSNSFGFGGHNVTLAFKKYQ 416
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 328 bits (840), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/417 (42%), Positives = 255/417 (61%), Gaps = 5/417 (1%)
Query: 81 EKDPKKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFS 140
E KR+VITGMG +S G+D+ + L+G +GI I R D +SV G++++F+
Sbjct: 23 EMSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFN 82
Query: 141 SKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSF 200
+ +ID K RR+D +Y +VA R A+++A L + EN RIGV +GSG+GG+ +F
Sbjct: 83 IEDHIDKKEARRMDRFTQYAIVAAREAVKDAQL--DINENT-ADRIGVWIGSGIGGMETF 139
Query: 201 TTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAA 260
+ L+ KG ++++PFF+P I +M + ++ID G GPN + TACAT A
Sbjct: 140 EIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAF 199
Query: 261 NHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEG 320
++RG+ D M+ GGTEA I + GF A RALS ++ + A RP+ + RDGFVMGEG
Sbjct: 200 KIVQRGDADAMITGGTEAPITHMAIAGFSASRALSTNDDI-ETACRPFQEGRDGFVMGEG 258
Query: 321 CGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSP 380
GILV+ESLE A RGANI AE +G T DA+H+T P +G G S + +++DAG+ P
Sbjct: 259 AGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEP 318
Query: 381 EEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSE-MKMNGTKSMIXXXXXXXXXXEAITTI 439
++V Y+NAH TST GDL EV AIK F + ++ +K++ TKSM EAI +
Sbjct: 319 KDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSA 378
Query: 440 KAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPF 496
+I + PT++ +PE +D VPN + + A+SNS GFGGHN+V+VF F
Sbjct: 379 LSIKDSKVAPTIHAVTPDPECDLDIVPNEAQDLDITYAMSNSLGFGGHNAVLVFKKF 435
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 305 bits (782), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 177/411 (43%), Positives = 259/411 (63%), Gaps = 5/411 (1%)
Query: 85 KKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGY 144
K+R+V+TG+G++S G+ ++ + LL G+SGIS ID FD S+++ +F G ++DF+ +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
I K R++D +Y +VAG +A++++ L + + TRIG +GSG+GGL
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEENH 133
Query: 205 EALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
+L+ G +KI+PFF+P +I NM + L I GL GP+ SI+TAC + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIA 193
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGIL 324
G+ D+MVAGG E A P GVGGF A RALS RN+ P+ ASRPWDK+RDGFV+G+G G+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
V+E EHA KRGA I AE +G ++ DA+HMT P +G G + +A +L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 385 YVNAHATSTLAGDLAEVNAIKKVFKD-TSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
YVNAH TST AGD AE A+K +F + S + ++ TKSM E+I +I A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 373
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQ-HHVNVAISNSFGFGGHNSVVVF 493
+ PT+N DN + +D VP+ +Q + + NSFGFGG N ++F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 305 bits (781), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 177/411 (43%), Positives = 259/411 (63%), Gaps = 5/411 (1%)
Query: 85 KKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGY 144
K+R+V+TG+G++S G+ ++ + LL G+SGIS ID FD S+++ +F G ++DF+ +
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
I K R++D +Y +VAG +A++++ L + + TRIG +GSG+GGL
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEENH 118
Query: 205 EALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
+L+ G +KI+PFF+P +I NM + L I GL GP+ SI+TAC + + AA I
Sbjct: 119 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIA 178
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGIL 324
G+ D+MVAGG E A P GVGGF A RALS RN+ P+ ASRPWDK+RDGFV+G+G G+L
Sbjct: 179 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 238
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
V+E EHA KRGA I AE +G ++ DA+HMT P +G G + +A +L DAG+ ++
Sbjct: 239 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 298
Query: 385 YVNAHATSTLAGDLAEVNAIKKVFKD-TSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
YVNAH TST AGD AE A+K +F + S + ++ TKSM E+I +I A+
Sbjct: 299 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 358
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQ-HHVNVAISNSFGFGGHNSVVVF 493
+ PT+N DN + +D VP+ +Q + + NSFGFGG N ++F
Sbjct: 359 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 409
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/411 (42%), Positives = 258/411 (62%), Gaps = 5/411 (1%)
Query: 85 KKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGY 144
K+R+V+TG+G++S G+ ++ + LL G+SGIS ID FD S+++ +F G ++DF+ +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
I K R++D +Y +VAG +A++++ L + + TRIG +GSG+GGL
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEENH 133
Query: 205 EALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
+L+ G +KI+PFF+P +I NM + L I GL GP+ SI+TAC + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIA 193
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGIL 324
G+ D+MVAGG E A P GVGGF A RALS RN+ P+ ASRPWDK+RDGFV+G+G G+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
V+E EHA KRGA I AE +G ++ DA+HMT P +G G + +A +L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 385 YVNAHATSTLAGDLAEVNAIKKVFKD-TSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
YVNAH TST AGD AE A+K +F + S + ++ T SM E+I +I A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTASMTGHLLGAAGAVESIYSILALR 373
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQ-HHVNVAISNSFGFGGHNSVVVF 493
+ PT+N DN + +D VP+ +Q + + NSFGFGG N ++F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 176/411 (42%), Positives = 258/411 (62%), Gaps = 5/411 (1%)
Query: 85 KKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGY 144
K+R+V+TG+G++S G+ ++ + LL G+SGIS ID FD S+++ +F G ++DF+ +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
I K R++D +Y +VAG +A++++ L + + TRIG +GSG+GGL
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEENH 133
Query: 205 EALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
+L+ G +KI+PFF+P +I NM + L I GL GP+ SI+TA + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIA 193
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGIL 324
G+ D+MVAGG E A P GVGGF A RALS RN+ P+ ASRPWDK+RDGFV+G+G G+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
V+E EHA KRGA I AE +G ++ DA+HMT P +G G + +A +L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 385 YVNAHATSTLAGDLAEVNAIKKVFKD-TSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
YVNAH TST AGD AE A+K +F + S + ++ TKSM E+I +I A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 373
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQ-HHVNVAISNSFGFGGHNSVVVF 493
+ PT+N DN + +D VP+ +Q + + NSFGFGG N ++F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 301 bits (770), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 176/411 (42%), Positives = 258/411 (62%), Gaps = 5/411 (1%)
Query: 85 KKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGY 144
K+R+V+TG+G++S G+ ++ + LL G+SGIS ID FD S+++ +F G ++DF+ +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
I K R++D +Y +VAG +A++++ L + + TRIG +GSG+GGL
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEENH 133
Query: 205 EALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
+L+ G +KI+PFF+P +I NM + L I GL GP+ SI+TA + + AA I
Sbjct: 134 TSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIA 193
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGIL 324
G+ D+MVAGG E A P GVGGF A RALS RN+ P+ ASRPWDK+RDGFV+G+G G+L
Sbjct: 194 YGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
V+E EHA KRGA I AE +G ++ DA+HMT P +G G + +A +L DAG+ ++
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIG 313
Query: 385 YVNAHATSTLAGDLAEVNAIKKVFKD-TSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
YVNAH TST AGD AE A+K +F + S + ++ TKSM E+I +I A+
Sbjct: 314 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALR 373
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQ-HHVNVAISNSFGFGGHNSVVVF 493
+ PT+N DN + +D VP+ +Q + + NSFGFGG N ++F
Sbjct: 374 DQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 294 bits (752), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 236/407 (57%), Gaps = 6/407 (1%)
Query: 87 RIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYID 146
R+V+TG G+ S G+ ++F+N L G+ GI I +FD S F V +I+DF Y
Sbjct: 24 RVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFV 83
Query: 147 GKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVEA 206
K+ R D+ Y L A + A+ A+L +E ++R R GV+V SG+GG+ V
Sbjct: 84 KKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVIVASGIGGIKEIEDQVLR 140
Query: 207 LIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRG 266
L +KG K++ P +P ++ NM S +A+ G G SI+TAC+++N A I+ G
Sbjct: 141 LHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFG 200
Query: 267 ETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGILVM 326
D+M+ GGTEA+I P + GF A ALS E P RAS P+DKDR+GFVMGEG G+LV+
Sbjct: 201 FQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGSGMLVL 259
Query: 327 ESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVNYV 386
ESLEHA KRGA I+AE +G TCDA+HMT P +G G I +LE+A +SPE+V YV
Sbjct: 260 ESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYV 319
Query: 387 NAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAITTGW 446
NAH TST A + E AI V E+ ++ TKS EAI TI+A+ +
Sbjct: 320 NAHGTSTPANEKGESGAIVAVLG--KEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNF 377
Query: 447 LHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
+ T + + + V + + AISN+FGFGGHN+V+ F
Sbjct: 378 VPMTAGTSEVSDYIEANVVYGQGLEKEIPYAISNTFGFGGHNAVLAF 424
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 168/407 (41%), Positives = 235/407 (57%), Gaps = 6/407 (1%)
Query: 87 RIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYID 146
R+V+TG G+ S G+ ++F+N L G+ GI I +FD S F V +I+DF Y
Sbjct: 25 RVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFV 84
Query: 147 GKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVEA 206
K+ R D+ Y L A + A+ A+L +E ++R R GV+V SG+GG+ V
Sbjct: 85 KKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVIVASGIGGIKEIEDQVLR 141
Query: 207 LIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRG 266
L +KG K++ P +P ++ NM S +A+ G G SI+TAC+++N A I+ G
Sbjct: 142 LHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFG 201
Query: 267 ETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGILVM 326
D+M+ GGTEA+I P + GF A ALS E P RAS P+DKDR+GFVMGEG G+LV+
Sbjct: 202 FQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGSGMLVL 260
Query: 327 ESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVNYV 386
ESLEHA KRGA I+AE +G TCDA+HMT P +G G I +LE+A +SPE+V YV
Sbjct: 261 ESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYV 320
Query: 387 NAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAITTGW 446
NA TST A + E AI V E+ ++ TKS EAI TI+A+ +
Sbjct: 321 NAAGTSTPANEKGESGAIVAVLG--KEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNF 378
Query: 447 LHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
+ T + + + V + + AISN+FGFGGHN+V+ F
Sbjct: 379 VPMTAGTSEVSDYIEANVVYAQGLEKEIPYAISNTFGFGGHNAVLAF 425
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 169/416 (40%), Positives = 233/416 (56%), Gaps = 6/416 (1%)
Query: 78 PKREKDPKKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIR 137
P+ R+V+TG G+ S G+ +F+N L G+ GI I +FD S F V +I+
Sbjct: 15 PRGSHMKLNRVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQ 74
Query: 138 DFSSKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGL 197
DF Y K+ R D+ Y L A + A+ A+L L +R R GV+V SG+GG+
Sbjct: 75 DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVAAL---NRDRFGVIVASGIGGI 131
Query: 198 TSFTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFY 257
V L +KG K++ P +P ++ NM S +A+ G G SI+TAC+++N
Sbjct: 132 KEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIG 191
Query: 258 AAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVM 317
A I+ G D+M+ GGTEA+I P + GF A ALS E P RAS P+DKDR+GFVM
Sbjct: 192 DAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVM 250
Query: 318 GEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAG 377
GEG G+LV+ESLEHA KRGA I+AE +G TCDA+HMT P +G G I +LE+A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 378 VSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAIT 437
+SPE+V YVNAH TST A + E AI V + ++ TKS EAI
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKA--VPVSSTKSFTGHLLGAAGAVEAIV 368
Query: 438 TIKAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
TI+A+ ++ T + + + V + AISN+FGFGGHN+V+ F
Sbjct: 369 TIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLAKEIPYAISNTFGFGGHNAVLAF 424
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 284 bits (726), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 167/421 (39%), Positives = 254/421 (60%), Gaps = 12/421 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIR-------D 138
+R+VITG+GLVS S +++ + +LL GESG + F+ + + +I
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 139 FSSKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLT 198
F+ ++D K R++D Y + A +AL++A P+ + D+ R GV++GSG+GG+
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPE--NDEDQVRTGVLIGSGIGGIE 127
Query: 199 SFTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYA 258
L KG ++I+PFFIP + N+ S ++I L GPN+S+ TACAT +
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGD 187
Query: 259 AANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALS-QRNEYPKRASRPWDKDRDGFVM 317
AA I G+ D+MVAGGTE+ + + GF AC+ALS +RN+ P ASRP+D+DRDGFVM
Sbjct: 188 AARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVM 247
Query: 318 GEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAG 377
GEG GI+V+E LEHA+ RGA I AE +G ++ DA H+T P G G C+ +L+ AG
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAG 307
Query: 378 VSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKD-TSEMKMNGTKSMIXXXXXXXXXXEAI 436
+ P+E++Y+NAH TST+A D E+ A+++V + +++ M+ TKS I EA+
Sbjct: 308 IVPDEIDYINAHGTSTMA-DTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAV 366
Query: 437 TTIKAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPF 496
+ AI TLN DN + ID VP+ ++ ++VA+SNSFGFGG N+ +V +
Sbjct: 367 FSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKPRERKIDVALSNSFGFGGTNASLVLRRY 426
Query: 497 S 497
+
Sbjct: 427 T 427
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/410 (37%), Positives = 242/410 (59%), Gaps = 5/410 (1%)
Query: 85 KKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGY 144
K+R+V+TG+G V+ G+D + + +G +G++ R + F V+ +++DF + Y
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
++ K R+ D Y + + A++++ L V+++ + R+GV +GSG+GG +F T
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQY 119
Query: 205 EALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
E + +G+++++PFF+P I + GS ++I G G N + TACATA A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGIL 324
RG+ D + GG EA I + GF A +ALS N P+ A RP+DKDRDGF++GEG GI+
Sbjct: 180 RGDADAXITGGAEAPITKXSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGIV 238
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
++E EHA RGA I AE +G T DA+H+T P +G G + +++DAG++P++V+
Sbjct: 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVD 298
Query: 385 YVNAHATSTLAGDLAEVNAIKKVF-KDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
Y+NAH TST D E AIK VF + ++ ++ TKS EAI + I
Sbjct: 299 YINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTIR 358
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
+ PT++ N + +D VPN ++ +VNV ISNSFGFGGHN+ +VF
Sbjct: 359 DNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVVISNSFGFGGHNATLVF 408
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 170/421 (40%), Positives = 251/421 (59%), Gaps = 12/421 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIR-------D 138
+R+VITG+GLVS D++ + +LLEG+SG+ I FD S S + +I
Sbjct: 6 RRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDGTNGT 65
Query: 139 FSSKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLT 198
+++ +++ K R++D Y + A +AL +A P+ E D+ GV++GSG+GG+
Sbjct: 66 YNADLHMESKEQRKVDAFIVYAIAAADQALADAEWFPKSDE--DQICTGVLIGSGIGGIE 123
Query: 199 SFTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYA 258
L KG ++I+PFFIP + N+ S ++I GL GPN+S+ TAC+T +
Sbjct: 124 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAIGD 183
Query: 259 AANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQ-RNEYPKRASRPWDKDRDGFVM 317
AA I G+ D+M+AGGTE+ I + GF ACRALS RN+ P+RASRP+D DRDGFVM
Sbjct: 184 AARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGFVM 243
Query: 318 GEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAG 377
GEG I+V+E LEHA KRGA I AE +G ++ DA+H+T P G G + +L+ A
Sbjct: 244 GEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAALKRAQ 303
Query: 378 VSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTS-EMKMNGTKSMIXXXXXXXXXXEAI 436
V+ E++Y+NAH TST+A D+ E+ A+++V + ++ M+ TKS I EAI
Sbjct: 304 VNVSELDYINAHGTSTMA-DVIELAAVERVLGYYAPQVSMSSTKSSIGHLLGAAGAAEAI 362
Query: 437 TTIKAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPF 496
+ AI TLN +N E ID VP+ ++ ++ +SNSFGFGG N+ +V F
Sbjct: 363 FCVLAIRDNIAPATLNLENPSIETKIDLVPHKPRERKIDTVLSNSFGFGGTNASLVMRRF 422
Query: 497 S 497
S
Sbjct: 423 S 423
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/419 (37%), Positives = 227/419 (54%), Gaps = 13/419 (3%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFS------VRFGGQIRDF 139
+R+VITG+GLV+ G +++L+ GESGI + + S V G F
Sbjct: 21 RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQF 80
Query: 140 SSKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTS 199
+ + ++ + + + + A A++++ PQ D+ GV +G GM L
Sbjct: 81 NEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLEV 138
Query: 200 FTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAA 259
+ KGY K++PFF+P + NM + ++I L GPN+++STAC T + +
Sbjct: 139 VSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDS 198
Query: 260 ANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGE 319
I G+ D+MVAGGT++ I P + GF RALS N PK A RP+ RDGFVMGE
Sbjct: 199 FRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMGE 257
Query: 320 GCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVS 379
G +LV+E EHA++R A I AE LG ++ DA H+T P +G G C+A +L+DAGV
Sbjct: 258 GAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQ 317
Query: 380 PEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTS-EMKMNGTKSMIXXXXXXXXXXEAITT 438
PEE++Y+NAHATST GD AE AIK +FKD + + ++ TK EA T
Sbjct: 318 PEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFT 377
Query: 439 IKAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVN---VAISNSFGFGGHNSVVVFA 494
A L PTLN D EPE ++ VP ++ + ++NSFGFGG N+ + A
Sbjct: 378 TLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATLCIA 436
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 258 bits (658), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 157/417 (37%), Positives = 230/417 (55%), Gaps = 12/417 (2%)
Query: 87 RIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRD-------- 138
R+V+TG+G+VS G + + +L+ G SG+ + A S + GG ++D
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 139 FSSKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLT 198
F + + K R++D + +VA AL EA +P+ + +RT VV SG+GG
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERT--ATVVASGIGGFP 142
Query: 199 SFTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYA 258
V +G ++++PF IP+ ++N+ + ++I GP TACA +
Sbjct: 143 GLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGD 202
Query: 259 AANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVM 317
A IR GE D+++AGG EAA +GGF A RALS +E P RASRP+D+DRDGFVM
Sbjct: 203 AMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVM 262
Query: 318 GEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAG 377
GEG ++V+ESL+HA+ RGA IAE +G T DA+HMT DG G + +L
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 378 VSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAIT 437
V+PE+V+YVNAHATST GD E+ A+K VF + ++ TKS EA
Sbjct: 323 VAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAF 382
Query: 438 TIKAITTGWLHPTLNQDNLEPEVT-IDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
+I A+ G L TLN ++ +P +D + + V +A+SN FGFGG N+ V+F
Sbjct: 383 SILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLF 439
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/419 (36%), Positives = 226/419 (53%), Gaps = 13/419 (3%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFS------VRFGGQIRDF 139
+R+VITG+GLV+ G +++L+ GESGI + + S V G F
Sbjct: 27 RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQF 86
Query: 140 SSKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTS 199
+ + ++ + + + + A A++++ PQ D+ GV +G GM L
Sbjct: 87 NEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLEV 144
Query: 200 FTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAA 259
+ KGY K++PFF+P + NM + ++I L GPN+++STA T + +
Sbjct: 145 VSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGDS 204
Query: 260 ANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGE 319
I G+ D+MVAGGT++ I P + GF RALS N PK A RP+ RDGFVMGE
Sbjct: 205 FRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMGE 263
Query: 320 GCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVS 379
G +LV+E EHA++R A I AE LG ++ DA H+T P +G G C+A +L+DAGV
Sbjct: 264 GAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQ 323
Query: 380 PEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTS-EMKMNGTKSMIXXXXXXXXXXEAITT 438
PEE++Y+NAHATST GD AE AIK +FKD + + ++ TK EA T
Sbjct: 324 PEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFT 383
Query: 439 IKAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVN---VAISNSFGFGGHNSVVVFA 494
A L PTLN D EPE ++ VP ++ + ++NSFGFGG N+ + A
Sbjct: 384 TLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATLCIA 442
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 229/417 (54%), Gaps = 12/417 (2%)
Query: 87 RIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRD-------- 138
R+V+TG+G+VS G + + +L+ G SG+ + A S + GG ++D
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 139 FSSKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLT 198
F + + K R++D + +VA AL EA +P+ + +RT VV SG+GG
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERT--ATVVASGIGGFP 142
Query: 199 SFTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYA 258
V +G ++++PF IP+ ++N+ + ++I GP TA A +
Sbjct: 143 GLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQAIGD 202
Query: 259 AANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVM 317
A IR GE D+++AGG EAA +GGF A RALS +E P RASRP+D+DRDGFVM
Sbjct: 203 AMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVM 262
Query: 318 GEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAG 377
GEG ++V+ESL+HA+ RGA IAE +G T DA+HMT DG G + +L
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 378 VSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAIT 437
V+PE+V+YVNAHATST GD E+ A+K VF + ++ TKS EA
Sbjct: 323 VAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAF 382
Query: 438 TIKAITTGWLHPTLNQDNLEPEVT-IDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
+I A+ G L TLN ++ +P +D + + V +A+SN FGFGG N+ V+F
Sbjct: 383 SILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLF 439
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 230/434 (52%), Gaps = 30/434 (6%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGIS--PIDRFDASSFS-------------- 129
+R+V+TG+G+V+ G ++ + +L++GE GI +D SF
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 130 ----VRFGGQIRDFSSKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTR 185
V +G +F ++ N + + + Y + A AL +A P E +RT
Sbjct: 61 VAAFVPYGSNPGEFDEALWL---NSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTG 117
Query: 186 IGVVVGSGMGGLTSFTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSI 245
+ + G G + + + +K ++++PFFIP + NM S +++ G GPN++
Sbjct: 118 VSIGGGIGS--ICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAA 175
Query: 246 STACATANYCFYAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRA 304
TACAT + A I+ G+ D+MVAGGTE++I V GF RALS + N P+ A
Sbjct: 176 VTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEA 235
Query: 305 SRPWDKDRDGFVMGEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLG 364
SRP+D DRDGFV+GEG G++V+E EHA +RGA I AE G ++ DAHH+T P DG G
Sbjct: 236 SRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKG 295
Query: 365 VSSCIAKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKD---TSEMKMNGTKS 421
+ ++L +G+ P +++YVNAHATST GD E AIK VF + + + + TK
Sbjct: 296 AVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKG 355
Query: 422 MIXXXXXXXXXXEAITTIKAITTGWLHPTLNQDNLEPEVTIDTVP-NVKKQHHVNVAISN 480
EAI +I AI G TLN N +P +P K+ V A+SN
Sbjct: 356 ATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSN 415
Query: 481 SFGFGGHNSVVVFA 494
SFGFGG N+ ++FA
Sbjct: 416 SFGFGGTNASLLFA 429
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 210/399 (52%), Gaps = 14/399 (3%)
Query: 102 DIDKFYNKLLEGESGISPI-DRFDAS-SFSVRFGGQIRDF--SSKGYIDGKNDRRLDDCW 157
DI+ + LL GESGI + D F +V+ GG ++D S G +D RR+
Sbjct: 28 DIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVDSHMGRLD---MRRMSYVQ 84
Query: 158 RYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVEALIQKGYKKITP 217
R + G + E A SP+V D R VVVG+G+GG + + G +K++P
Sbjct: 85 RMGKLLGGQLWESAG-SPEV----DPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSP 139
Query: 218 FFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGETDIMVAGGTE 277
+ + N +A++ + G + +AC++ + A I G+ D+ V GG E
Sbjct: 140 LAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVE 199
Query: 278 AAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGILVMESLEHAMKRGA 337
I + F RA+S RN+ P+RASRP+DKDRDGFV GE ++++E+ EHA RGA
Sbjct: 200 GPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGA 259
Query: 338 NIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVNYVNAHATSTLAGD 397
+A LG +T DA HM P +DG+ + +SLE AG+SP ++++VNAH T+T GD
Sbjct: 260 KPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGD 319
Query: 398 LAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAITTGWLHPTLNQDNLE 457
AE NAI+ D + + KS + E++ T+ + G + PTLN + +
Sbjct: 320 AAEANAIRVAGCD--QAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPD 377
Query: 458 PEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPF 496
PE+ +D V + A++NSFGFGGHN + F +
Sbjct: 378 PEIDLDVVAGEPRYGDYRYAVNNSFGFGGHNVALAFGRY 416
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/399 (34%), Positives = 209/399 (52%), Gaps = 14/399 (3%)
Query: 102 DIDKFYNKLLEGESGISPI-DRFDAS-SFSVRFGGQIRDF--SSKGYIDGKNDRRLDDCW 157
DI+ + LL GESGI + D F +V+ GG ++D S G +D RR+
Sbjct: 28 DIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVDSHMGRLD---MRRMSYVQ 84
Query: 158 RYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVEALIQKGYKKITP 217
R + G + E A SP+V D R VVVG+G+GG + + G +K++P
Sbjct: 85 RMGKLLGGQLWESAG-SPEV----DPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSP 139
Query: 218 FFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGETDIMVAGGTE 277
+ + N +A++ + G + +A ++ + A I G+ D+ V GG E
Sbjct: 140 LAVQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGVE 199
Query: 278 AAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGILVMESLEHAMKRGA 337
I + F RA+S RN+ P+RASRP+DKDRDGFV GE ++++E+ EHA RGA
Sbjct: 200 GPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGA 259
Query: 338 NIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVNYVNAHATSTLAGD 397
+A LG +T DA HM P +DG+ + +SLE AG+SP ++++VNAH T+T GD
Sbjct: 260 KPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGD 319
Query: 398 LAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAITTGWLHPTLNQDNLE 457
AE NAI+ D + + KS + E++ T+ + G + PTLN + +
Sbjct: 320 AAEANAIRVAGCD--QAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPD 377
Query: 458 PEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPF 496
PE+ +D V + A++NSFGFGGHN + F +
Sbjct: 378 PEIDLDVVAGEPRYGDYRYAVNNSFGFGGHNVALAFGRY 416
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 214 bits (545), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 136/417 (32%), Positives = 210/417 (50%), Gaps = 20/417 (4%)
Query: 88 IVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFS--VRFGGQI-RDFSSKGY 144
+V+TG+ + + +D + + LL+ +SGI +D F VR GG + +F +
Sbjct: 30 VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQ-- 87
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
+ RR+ R V RR E A SP+V D R+ V +G+G+G
Sbjct: 88 LTRIELRRMGYLQRMSTVLSRRLWENAG-SPEV----DTNRLMVSIGTGLGSAEELVFSY 142
Query: 205 EALIQKGYKKITPFFIPYSITNMGSALLAID----TGLMGPNYSISTACATANYCFYAAA 260
+ + +G K ++P + + N +A + ++ G+M P +ACA+ A
Sbjct: 143 DDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTP----VSACASGAEAIARAW 198
Query: 261 NHIRRGETDIMVAGGTEAAIIPTGVGGFIACR-ALSQRNEYPKRASRPWDKDRDGFVMGE 319
I GE D + GG E I + GF R +S N+ P A RP+D+DRDGFV GE
Sbjct: 199 QQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGE 258
Query: 320 GCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVS 379
G +L++E+ EHA RGANI+A +G ++T D HM P +G I ++++ AG++
Sbjct: 259 GGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLA 318
Query: 380 PEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTI 439
P ++++VNAHAT T GDLAE AI + KS + E+I T+
Sbjct: 319 PGDIDHVNAHATGTQVGDLAEGRAINNALGGNRP-AVYAPKSALGHSVGAVGAVESILTV 377
Query: 440 KAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPF 496
A+ + PTLN NL+PE+ +D V + + AI+NSFGFGGHN + F +
Sbjct: 378 LALRDQVIPPTLNLVNLDPEIDLDVVAGEPRPGNYRYAINNSFGFGGHNVAIAFGRY 434
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 219/410 (53%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR+VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 118
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+ACAT+ +C A I+
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+H TST GD+ E+ AI++VF D S ++ TK+M EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 401
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 218/410 (53%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 118
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+ACAT+ +C A I+
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+H TST GD+ E+ AI++VF D S ++ TK+M EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 401
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR+VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 130
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+ACAT+ +C A I+
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 304
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+H TST GD+ E+ AI++VF D S ++ T +M EAI ++ +
Sbjct: 305 DYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATAAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 364 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 413
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 211 bits (538), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 118
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+ACAT+ +C A I+
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+H TST GD+ E+ AI++VF D S ++ T++M EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATRAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 401
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 217/410 (52%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 130
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+ACAT+ +C A I+
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 304
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+ TST GD+ E+ AI++VF D S ++ TK+M EAI ++ +
Sbjct: 305 DYLNSQGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 364 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 413
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 217/410 (52%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 130
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+ACAT+ +C A I+
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 190
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 304
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+ TST GD+ E+ AI++VF D S ++ TK+M EAI ++ +
Sbjct: 305 DYLNSEGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 364 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 413
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 219/416 (52%), Gaps = 17/416 (4%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
+R+V+TGMG+VS GS+ ++ L E +SGIS + + F + G D + +
Sbjct: 6 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 64
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D + R + +A +A+ +A L+ + + N R G+++GSG + +
Sbjct: 65 DRRAMRFHGRGTAWNHIAMDQAIADAGLTEEEVSN---ERTGIIMGSGGPSTRTIVDSAD 121
Query: 206 ALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRR 265
+KG K++ PF +P ++++ SA LA + G NYSIS+ACAT+N+C A I+
Sbjct: 122 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 181
Query: 266 GETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGIL 324
G+ D M AGG E V F A A+S + N+ P ASR +DK+RDGFV+ G G+L
Sbjct: 182 GKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVL 240
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
V+E LE A+ RGA I E +G T D + M P G G C+ +L +++
Sbjct: 241 VLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALSTV---TSKID 295
Query: 385 YVNAHATSTLAGDLAEVNAIKKVFKDTSEM-KMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
Y+N HATST AGD E+ AI+++F + TKS+ EAI ++ +
Sbjct: 296 YINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQ 355
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQ---HHVNVAISNSFGFGGHNSVVVFAPF 496
++ + + + L+P +P V+K+ +N +SNSFGFGG N+ +VF +
Sbjct: 356 NNFICESAHIEELDPAFA--DMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRY 409
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 138/416 (33%), Positives = 219/416 (52%), Gaps = 17/416 (4%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
+R+V+TGMG+VS GS+ ++ L E +SGIS + + F + G D + +
Sbjct: 23 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 81
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D + R + +A +A+ +A L+ + + N R G+++GSG + +
Sbjct: 82 DRRAMRFHGRGTAWNHIAMDQAIADAGLTEEEVSN---ERTGIIMGSGGPSTRTIVDSAD 138
Query: 206 ALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRR 265
+KG K++ PF +P ++++ SA LA + G NYSIS+ACAT+N+C A I+
Sbjct: 139 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 198
Query: 266 GETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGIL 324
G+ D M AGG E V F A A+S + N+ P ASR +DK+RDGFV+ G G+L
Sbjct: 199 GKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVL 257
Query: 325 VMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVN 384
V+E LE A+ RGA I E +G T D + M P G G C+ +L +++
Sbjct: 258 VLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALSTV---TSKID 312
Query: 385 YVNAHATSTLAGDLAEVNAIKKVFKDTSEM-KMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
Y+N HATST AGD E+ AI+++F + TKS+ EAI ++ +
Sbjct: 313 YINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQ 372
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQ---HHVNVAISNSFGFGGHNSVVVFAPF 496
++ + + + L+P +P V+K+ +N +SNSFGFGG N+ +VF +
Sbjct: 373 NNFICESAHIEELDPAFA--DMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRY 426
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 197 bits (502), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR+VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 130
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+A AT+ +C A I+
Sbjct: 131 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 190
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 191 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 249
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 250 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 304
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+H TST GD+ E+ AI++VF D S ++ TK+M EAI ++ +
Sbjct: 305 DYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 364 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 413
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 197 bits (502), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR+VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 118
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+A AT+ +C A I+
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQ 178
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+H TST GD+ E+ AI++VF D S ++ TK+M EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 401
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 217/410 (52%), Gaps = 12/410 (2%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFSSKGYI 145
KR VITG+G+VS G++ + L EG SGI+ S G ++ + G I
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 146 DGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGVE 205
D K R + D Y ++ +A+ +A LSP+ +N R+G++ GSG G G +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQN--NPRVGLIAGSGGGSPRFQVFGAD 118
Query: 206 ALI-QKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIR 264
A+ +G K + P+ + ++ + SA LA + G NYSIS+A AT+ +C A I+
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQIQ 178
Query: 265 RGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCGI 323
G+ DI+ AGG E F A ALS + N+ P++ASR +D RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 324 LVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEV 383
+V+E LEHA+ RGA+I AE +G T D M P G G C+ ++ GV +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PI 292
Query: 384 NYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAIT 443
+Y+N+H TST GD+ E+ AI++VF D S ++ TK+M EAI ++ +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDKSP-AISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 444 TGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
G++ P++N + L+ + + + +SNSFGFGG N+ +V
Sbjct: 352 HGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVM 401
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 198/418 (47%), Gaps = 14/418 (3%)
Query: 85 KKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFS--SK 142
K+R+VITG+G+ + G+ +F+ L G + I FD S + + + DF ++
Sbjct: 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEA-DFDPVAE 60
Query: 143 GYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTT 202
G+ + DR +D ++ + R A + L P L D R+GV +GS + TS
Sbjct: 61 GFGPRELDR-MDRASQFAVACAREAFAASGLDPDTL---DPARVGVSLGSAVAAATSLER 116
Query: 203 GVEALIQKGYKK------ITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCF 256
L G ++ Y + ++ A +A G GP +ST C +
Sbjct: 117 EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSV 176
Query: 257 YAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFV 316
A I G D+M AG + I P V F A RA + RN+ P+ ASRP+D RDGFV
Sbjct: 177 GNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFV 236
Query: 317 MGEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDA 376
+ EG + V+E + A+ RGA I AE G A C+A+HMT ++DG ++ I +L+++
Sbjct: 237 LAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDES 296
Query: 377 GVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTS-EMKMNGTKSMIXXXXXXXXXXEA 435
+++Y+NAH + T D E A K+ + + ++ KSM+ E
Sbjct: 297 RTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEI 356
Query: 436 ITTIKAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
+ A+ G + PT N +PE +D VP ++ + ++ GFGG S +V
Sbjct: 357 AACVLALEHGVVPPTANLRTSDPECDLDYVPLEARERKLRSVLTVGSGFGGFQSAMVL 414
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/410 (35%), Positives = 211/410 (51%), Gaps = 13/410 (3%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRF-DASSFSVRFGGQIRDFSSKGY 144
KR VITG+G+VS G++ + L EG SGI+ F DA S +G K
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSEPKDL 64
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSFTTGV 204
ID K R D Y +A + A+ ++ LS + N R G+VVGSG G + G
Sbjct: 65 IDRKVLRFXSDASIYAYLAXQEAIADSGLSDSQVSNF---RSGLVVGSGGGSPRNQVAGS 121
Query: 205 EAL-IQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHI 263
+A +G K + P+ + + + SA LA + G NYSIS+ACAT+ +C A I
Sbjct: 122 DAXRTPRGLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALELI 181
Query: 264 RRGETDIMVAGGTEAAIIPTGVGGFIACRALSQR-NEYPKRASRPWDKDRDGFVMGEGCG 322
+ G+ DI+ AGG E F A ALS + N+ P +ASR +D+DRDGFV+ G G
Sbjct: 182 QLGKQDIVFAGGGEELCWEXACE-FDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGG 240
Query: 323 ILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEE 382
+V+E LEHA+ RGA+I AE +G T D P G G C + AGV
Sbjct: 241 XVVVEELEHALARGAHIYAEIVGYGATSDGADXVAP--SGEGAVRCXQXAX--AGVDT-P 295
Query: 383 VNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAITTIKAI 442
++Y N H TST GD+ E+ AI++VF + + ++ TK+ EAI ++ +
Sbjct: 296 IDYXNVHGTSTPVGDVKELGAIREVFGNNTPA-ISSTKAXTGHSLGAAGVHEAIFSLLXV 354
Query: 443 TTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVV 492
G++ P++N DNL+ + + Q + SNSFGFGG N+ +V
Sbjct: 355 EHGFIAPSINIDNLDEQAQGXNIITETTQRELTTVXSNSFGFGGTNATLV 404
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 192/418 (45%), Gaps = 25/418 (5%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDA-SSFSVRFGGQIRDFSSKGY 144
KR+VITGMG V+ GS D+ L G + + + +D S R + F+
Sbjct: 6 KRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPAD 65
Query: 145 IDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGG---LTSFT 201
K R + Y + A AL +A + E++ R+GV GS G + +F
Sbjct: 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIRAFG 123
Query: 202 TGVEA-----LIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCF 256
T +E+ + Y ++ P +++ L D L G S+ACA+ +
Sbjct: 124 TMLESGSMTDVTSNSYVQMMPHTTAVNVS------LFWD--LKGRIVPTSSACASGSQAI 175
Query: 257 YAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFV 316
A +I G+ +M+AGG E P V F A S RN+ P RP+D RDG V
Sbjct: 176 GYAYENIAMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLV 234
Query: 317 MGEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDA 376
+GEG LV+E EHA RGA I AE +G D HMT P + + + +A LEDA
Sbjct: 235 VGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTASTMARAMQLA--LEDA 292
Query: 377 GVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAI 436
+ + YVNAH TST GD+AE A + F + M ++ KS + EA
Sbjct: 293 KLDANAIAYVNAHGTSTDRGDVAESQATARTFGE--RMPISSLKSYVGHTLGACGALEAW 350
Query: 437 TTIKAITTGWLHPTLNQDNLEPEVT-IDTVPNVKKQHHVNVAISNSFGFGGHNSVVVF 493
TI+ + W PTLN ++P +D + + +SN+F FGG N+ ++F
Sbjct: 351 WTIEMMKRNWYAPTLNLTEVDPACAPLDYIRGEARAIDAEYVMSNNFAFGGINTSLIF 408
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 192/421 (45%), Gaps = 14/421 (3%)
Query: 81 EKDPKKRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFGGQIRDFS 140
+ D K ++ITG+G+V+ G + +++ +L+G G+ P+ RFD S + GQI DF
Sbjct: 4 KDDDDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFH 63
Query: 141 SKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTSF 200
+ +I G+ + D R L A AL++A P+ L + D +GVV + GG
Sbjct: 64 APDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYD---MGVVTANACGGFDFT 120
Query: 201 TTGVEALIQKGYKKITPF--FIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYA 258
L +G K ++ + F + N G ++I G+ GP+ ++ A
Sbjct: 121 HREFRKLWSEGPKSVSVYESFAWFYAVNTGQ--ISIRHGMRGPSSALVAEQAGGLDALGH 178
Query: 259 AANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMG 318
A IRRG T ++V+GG ++A+ P G IA +S + P RA P+D+ G+V G
Sbjct: 179 ARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTATD-PDRAYLPFDERAAGYVPG 236
Query: 319 EGCGILVMESLEHAMKRGA-NIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAG 377
EG ILV+E A RG + E G A T D + + G+ I +L DAG
Sbjct: 237 EGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA---GLERAIRLALNDAG 293
Query: 378 VSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGTKSMIXXXXXXXXXXEAIT 437
PE+V+ V A D AE AI +VF + + K+ + +T
Sbjct: 294 TGPEDVDVVFADGAGVPELDAAEARAIGRVFGREG-VPVTVPKTTTGRLYSGGGPLDVVT 352
Query: 438 TIKAITTGWLHPTLNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPFS 497
+ ++ G + PT ++ E ID V + A+ + G G NS V F+
Sbjct: 353 ALMSLREGVIAPTAGVTSVPREYGIDLVLGEPRSTAPRTALVLARGRWGFNSAAVLRRFA 412
Query: 498 P 498
P
Sbjct: 413 P 413
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 184/454 (40%), Gaps = 48/454 (10%)
Query: 65 RTIRVMASPTASAPKREKDPKKRIVITGMGLVSVFGSDIDK---FYNKLLEGESGIS--P 119
RT+ + S TA + E + I I +G F D+D F+ + G I+ P
Sbjct: 18 RTVTELDSVTARLREVEHRAGEPIAI--VGXACRFPGDVDSPESFWEFVSGGGDAIAEAP 75
Query: 120 IDRFDASSFSVRFGGQIR---DFSSKGY-IDGKNDRRLDDCWRYCLVAGRRALEEASLSP 175
DR R GG + DF + + I + D R L ALE A P
Sbjct: 76 ADRGWEPDPDARLGGXLAAAGDFDAGFFGISPREALAXDPQQRIXLEISWEALERAGHDP 135
Query: 176 QVLENMDRTRIGVVVGSGMGGLTSFTTGVEALIQKGYKKITPFFIPYSITNMGSALLAID 235
L + GV G G T + ++ + + +++ S +A
Sbjct: 136 VSLRG---SATGVFTGVG-------TVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYC 185
Query: 236 TGLMGPNYSISTACATANYCFYAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALS 295
GL GP ++ TAC++ + A +RR E + +AGG P G F R S
Sbjct: 186 LGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSP---GAFTEFR--S 240
Query: 296 QRNEYPKRASRPWDKDRDGFVMGEGCGILVMESLEHAMKRGANIIAEYLGGAVTCD--AH 353
Q +P+ K DGF + EG G+LV++ L A + G ++A G AV D ++
Sbjct: 241 QGGLAADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASN 300
Query: 354 HMTDPRSDGLGVSSCIAKSLEDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVF---KD 410
+T P G I ++LE+AGV +V+YV AH T T GD EV+A+ + +D
Sbjct: 301 GLTAP--SGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERD 358
Query: 411 TSE-MKMNGTKSMIXXXXXXXXXXEAITTIKAITTGWLHPTLNQDNLEPEVTID------ 463
+ + + KS I + A+ G TL+ D P++ D
Sbjct: 359 PDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSPQIEWDLGAVSV 418
Query: 464 -----TVPNVKKQHHVNVAISNSFGFGGHNSVVV 492
+ P ++ V +SFG G N+ V+
Sbjct: 419 VSQARSWPAGERPRRAGV---SSFGISGTNAHVI 449
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 23/288 (7%)
Query: 222 YSITNMGSAL----LAIDTGLMGPNYSISTACATANYCFYAAANHIRRGETDIMVAGGTE 277
YS+T + A+ ++ GL GP+ S+ TAC+++ + A +R+GE+ + V GG
Sbjct: 146 YSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAA 205
Query: 278 AAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEGCGILVMESLEHAMKRGA 337
P F RAL+ S+ + DGF EG ++++E L A + G
Sbjct: 206 VMATPGVFVDFSRQRALAADGR-----SKAFGAGADGFGFSEGVTLVLLERLSEARRNGH 260
Query: 338 NIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDAGVSPEEVNYVNAHATSTLAGD 397
++A G A+ D G I ++LE G+ P +V+ V AH T T GD
Sbjct: 261 EVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGD 320
Query: 398 LAEVNAIKKVF---KDTSE-MKMNGTKSMIXXXXXXXXXXEAITTIKAITTGWLHPTLNQ 453
E NA+ + +D + + KS I + + A+ G L TL+
Sbjct: 321 PIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHV 380
Query: 454 DNLEPEVTIDT---------VPNVKKQHHVNVAISNSFGFGGHNSVVV 492
+ P V + P + + A+S +FG G N+ V+
Sbjct: 381 EEPTPHVDWSSGGVALLAGNQPWRRGERTRRAAVS-AFGISGTNAHVI 427
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 169/434 (38%), Gaps = 49/434 (11%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDR-FDASSFSV-RFGGQIRDFS--- 140
+ +VI GM ++++F+ L+ G ++ DR + A + + R G+++D S
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFD 61
Query: 141 -SKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSGMGGLTS 199
S + K +D R L A+ + ++P L T GV VG S
Sbjct: 62 ASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLRG---TSTGVWVG------VS 112
Query: 200 FTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLM----GPNYSISTACATANYC 255
+ EAL + + YS+ A++A GP+ +I TAC+++
Sbjct: 113 SSDASEAL-----SRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLA 167
Query: 256 FYAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGF 315
+A IR GE V GG + P F+ LSQ R +D + G+
Sbjct: 168 LQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDG-----TCRSFDAEGTGY 222
Query: 316 VMGEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDA---HHMTDPRSDGLGVSSCIAKS 372
E + V+ + + +R + A L D +T P D V + +S
Sbjct: 223 CRAEAV-VAVLLTKKSLARR---VYATILNAGTNTDGSKEQGVTFPSGD---VQEQLIRS 275
Query: 373 L-EDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSE--MKMNGTKSMIXXXXXX 429
L AG PE + Y+ AH T T GD E+N I T + + TKS +
Sbjct: 276 LYAPAGPDPESLEYIEAHGTGTKVGDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPA 335
Query: 430 XXXXEAITTIKAITTGWLHPTLNQDNLEPEVT------IDTVPNVKKQHHVNVAISNSFG 483
I + ++ G P L+ PE+ + V NV I NSFG
Sbjct: 336 SGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVDRPLPIRGGNVGI-NSFG 394
Query: 484 FGGHNSVVVFAPFS 497
FGG N V+ P S
Sbjct: 395 FGGSNVHVILQPNS 408
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/433 (23%), Positives = 172/433 (39%), Gaps = 51/433 (11%)
Query: 86 KRIVITGMGLVSVFGSDIDKFYNKLLEGESGISPIDR-FDASSFSV-RFGGQIRDFS--- 140
+ +VI GM ++ +F++ L+ G ++ DR + A + + R G+++D S
Sbjct: 4 EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFD 63
Query: 141 -SKGYIDGKNDRRLDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVG-SGMGGLT 198
S + K +D R L A+ + ++P L T GV VG SG
Sbjct: 64 ASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLRG---THTGVWVGVSGSETSE 120
Query: 199 SFTTGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLM----GPNYSISTACATANY 254
+ + E L+ YS+ A++A GP+ ++ TAC+++
Sbjct: 121 ALSRDPETLVG------------YSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLM 168
Query: 255 CFYAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDG 314
A I G+ + GG + P F+ LS P+ + +D +G
Sbjct: 169 ALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNG 223
Query: 315 FVMGEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHH---MTDPRSDGLGVSSCIAK 371
+ EG + V+ + + +R + A L D +T P D + + +
Sbjct: 224 YCRSEGV-VAVLLTKKSLARR---VYATILNAGTNTDGFKEQGVTFPSGD---IQEQLIR 276
Query: 372 SL-EDAGVSPEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSE--MKMNGTKSMIXXXXX 428
SL + AGV+PE Y+ AH T T GD E+N I + T + + + TKS +
Sbjct: 277 SLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEP 336
Query: 429 XXXXXEAITTIKAITTGWLHPTLNQDNLEPEVT------IDTVPNVKKQHHVNVAISNSF 482
+ ++ G P L+ + PE+ + V NV I NSF
Sbjct: 337 ASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPLPVRGGNVGI-NSF 395
Query: 483 GFGGHNSVVVFAP 495
GFGG N ++ P
Sbjct: 396 GFGGSNVHIILRP 408
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 16/269 (5%)
Query: 153 LDDCWRYCLVAGRRALEEASLSP-QVLENMDRTRIGVVVGSGMGGLTSFTTGVEALIQKG 211
+D + +VA A + +P +++ + +++ G+GMGG+TS T + G
Sbjct: 2644 IDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLL-G 2702
Query: 212 YKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGETDIM 271
K + + ++ G G ACATA + I+ G+ D++
Sbjct: 2703 RAKPNDILQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLV 2762
Query: 272 VAGGTEAAIIPTGVG-GFIACRA----LSQRNEYPKRASRPWDKDRDGFVMGEGCGILVM 326
+AGG + + +G G +A A + + + SR D+ R GF+ +G G +++
Sbjct: 2763 IAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDRRRLGFLEAQGGGTILL 2822
Query: 327 ESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGV--------SSCIAKSLEDAGV 378
+ A+K G ++A D H + P + GLG S +A+SL GV
Sbjct: 2823 ARGDLALKMGLPVLAVVGYAQSFADGVHTSIP-APGLGALGAARGGRESTLARSLAQLGV 2881
Query: 379 SPEEVNYVNAHATSTLAGDLAEVNAIKKV 407
+++ ++ H TSTLA D E +++
Sbjct: 2882 GADDIAVISKHDTSTLANDPNETELHERI 2910
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 14/199 (7%)
Query: 151 RRLDDCWRYCLVAGRRALEEASLSP--QVLENMDRTRIGVVVGSGMGGLTSFTTGVEALI 208
+++D Y LV+ AL + ++ + + + + +G +GSG+GG T+ + +
Sbjct: 1181 QQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGG----TSALRGMY 1236
Query: 209 QKGY--KKITPFFIPYSITN-MGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRR 265
+ Y K + + S N M + + + GP + ACATA + I +
Sbjct: 1237 KDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQ 1296
Query: 266 GETDIMVAGG-----TEAAIIPTGVGGFIACRALSQRNEYPKRASRPWDKDRDGFVMGEG 320
G+ + + GG E + +G + R P SRP R+GF+ +G
Sbjct: 1297 GKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQG 1356
Query: 321 CGILVMESLEHAMKRGANI 339
CG+ V+ + + A++ G I
Sbjct: 1357 CGVQVIMTAQLALEMGVPI 1375
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 18/167 (10%)
Query: 184 TRIGVVVGSGMGGLTSFTTGVEALIQKGYKK--ITPFFIPYSITNMGSA---LLAIDTGL 238
+ +G GSGMGG+++ + + + +K + + S N SA +L I +
Sbjct: 1241 SEVGNCSGSGMGGVSA----LRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSS- 1295
Query: 239 MGPNYSISTACATANYCFYAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALS--- 295
GP + ACAT+ I G+ I + GG + G F +A S
Sbjct: 1296 -GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTL 1353
Query: 296 ---QRNEYPKRASRPWDKDRDGFVMGEGCGILVMESLEHAMKRGANI 339
+ P SRP R+GF+ +G GI ++ + A+K G I
Sbjct: 1354 EEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPI 1400
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 18/167 (10%)
Query: 184 TRIGVVVGSGMGGLTSFTTGVEALIQKGYKK--ITPFFIPYSITNMGSA---LLAIDTGL 238
+ +G GSGMGG+++ + + + +K + + S N SA +L I +
Sbjct: 1241 SEVGNCSGSGMGGVSA----LRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSS- 1295
Query: 239 MGPNYSISTACATANYCFYAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALS--- 295
GP + ACAT+ I G+ I + GG + G F +A S
Sbjct: 1296 -GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTL 1353
Query: 296 ---QRNEYPKRASRPWDKDRDGFVMGEGCGILVMESLEHAMKRGANI 339
+ P SRP R+GF+ +G GI ++ + A+K G I
Sbjct: 1354 EEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPI 1400
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 232 LAIDTGLMG--PNYSISTACATANYCFYAAANHIRRGETDIMVAGGTEAA-----IIPT 283
+AI+ G+ P+Y+++ C + AA I GE D+++AGGTE I+PT
Sbjct: 72 IAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPT 130
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 18/167 (10%)
Query: 184 TRIGVVVGSGMGGLTSFTTGVEALIQKGYKK--ITPFFIPYSITNMGSA---LLAIDTGL 238
+ +G GSGMGG+++ + + + +K + + S N SA +L I +
Sbjct: 1042 SEVGNCSGSGMGGVSA----LRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSS- 1096
Query: 239 MGPNYSISTACATANYCFYAAANHIRRGETDIMVAGGTEAAIIPTGVGGFIACRALS--- 295
GP + ACAT+ I G+ I + GG + G F +A S
Sbjct: 1097 -GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTL 1154
Query: 296 ---QRNEYPKRASRPWDKDRDGFVMGEGCGILVMESLEHAMKRGANI 339
+ P SRP R+GF+ +G GI ++ + A+K G I
Sbjct: 1155 EEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPI 1201
>pdb|3FI8|A Chain A, Crystal Structure Of Choline Kinase From Plasmodium
Falciparum, Pf14_0020
Length = 362
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 20/168 (11%)
Query: 95 LVSVFGSDIDKFYNKLLEGE-------SGISP--IDRFDASSFSVRFGGQ---IRDFSSK 142
L ++G D+D YN L E E I+P ++ FD G I D +K
Sbjct: 62 LFRIYGKDVDALYNPLSEFEVYKTMSKYRIAPLLLNTFDGGRIEEWLYGDPLSIDDLKNK 121
Query: 143 GYIDGKNDRRLDDCWRYCLVAGRRAL-EEASLSPQVLENMDRTRIGVVVGSGMGGLTSFT 201
+ G + ++ ++ +R L E +P V + MDR R+ V S L T
Sbjct: 122 SILVGIANV----LGKFHTLSRKRHLPEHWDKTPCVFKMMDRWRLAV---SNYKNLDKVT 174
Query: 202 TGVEALIQKGYKKITPFFIPYSITNMGSALLAIDTGLMGPNYSISTAC 249
+ IQ+ +K + I I N+ + ++ L N + C
Sbjct: 175 LDINKYIQESHKFLKFIKIYTQIENIANDIVFCHNDLQENNIMNTNKC 222
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 317 MGEGCGILVMESLEHAMKRGANIIAEYLGGAVTCDAHHMTDPRSDGLGVSSCIAKSLEDA 376
+ +G +LV+ S E A ++G +A +G +V DP+ G+G + I K LE
Sbjct: 251 LNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAG-----VDPKIMGIGPAPAIRKGLEKV 305
Query: 377 GVSPEEVNYV---NAHATSTLAGDLAEVNAIKKVFKDTSEMKMNGT 419
S E+ + + A A LA + K++ D ++ +NG+
Sbjct: 306 DWSLEDADLLEINEAFAAQYLAVE-------KELDLDREKVNVNGS 344
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 451 LNQDNLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPFSP 498
L+Q NL P +T VP VN+AI+ +F F G N V A F P
Sbjct: 300 LDQTNLHP-LTATAVPGSPVAGGVNLAINQAFNFNGTNHFVDGASFVP 346
>pdb|1SJG|A Chain A, Solution Structure Of T4moc, The Rieske Ferredoxin
Component Of The Toluene 4-Monooxygenase Complex
Length = 112
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 308 WDKDRDGFVMGEGCGILVMESLEHAMKRGANII---------AEYLGGAVTCDAHHMTDP 358
W + + F +G +L++ S EH +K + Y GG +TC AH T
Sbjct: 13 WVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFN 72
Query: 359 RSDGLGVSS---CIAK 371
G G++ C+A+
Sbjct: 73 DGTGHGINPDDCCLAE 88
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 241 PNYSISTACATANYCFYAAANHIRRGETDIMVAGGTEA 278
P +I+ CA+ A+ + G D+MVAGG E+
Sbjct: 86 PCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMES 123
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 94 GLVSVFGSDIDKFYNKLLEGESGISPIDRFDASSFSVRFG-GQIRDFSSKGYIDGKNDRR 152
G V+ F + IDK KL+E + I P + D FS R G + FSS ++ K
Sbjct: 125 GEVTFFTASIDKLKAKLIEIGAEIIP-SKIDLVEFSTRDPMGDVISFSSYPSLNSKKITS 183
Query: 153 LDDCWRYCLVAGRRALEEASLSPQVLENMDRTRIGVVVGSG 193
D + L + E S+ QV + +I ++ G
Sbjct: 184 PD----FFLHPKKEVRSEESIVEQVKSEEGKKKIAIITSGG 220
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 216 TPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGETDIMVAGG 275
TP P ++G+ G++G + +S CA Y AAA+ IR G M+ G
Sbjct: 118 TPPAAPMVAASLGA------KGILG--FDLSAGCAGFGYALGAAADMIRGGGAATMLVVG 169
Query: 276 TE 277
TE
Sbjct: 170 TE 171
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 216 TPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGETDIMVAGG 275
TP P ++G+ G++G + +S CA Y AAA+ IR G M+ G
Sbjct: 118 TPPAAPMVAASLGA------KGILG--FDLSAGCAGFGYALGAAADMIRGGGAATMLVVG 169
Query: 276 TE 277
TE
Sbjct: 170 TE 171
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 216 TPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGETDIMVAGG 275
TP P ++G+ G++G + +S CA Y AAA+ IR G M+ G
Sbjct: 117 TPPAAPMVAASLGA------KGILG--FDLSAGCAGFGYALGAAADMIRGGGAATMLVVG 168
Query: 276 TE 277
TE
Sbjct: 169 TE 170
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 216 TPFFIPYSITNMGSALLAIDTGLMGPNYSISTACATANYCFYAAANHIRRGETDIMVAGG 275
TP P ++G+ G++G + +S CA Y AAA+ IR G M+ G
Sbjct: 97 TPPAAPMVAASLGA------KGILG--FDLSAGCAGFGYALGAAADMIRGGGAATMLVVG 148
Query: 276 TE 277
TE
Sbjct: 149 TE 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,350,396
Number of Sequences: 62578
Number of extensions: 587605
Number of successful extensions: 1825
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1627
Number of HSP's gapped (non-prelim): 69
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)