BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010897
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|B Chain B, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|C Chain C, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|D Chain D, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|E Chain E, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|F Chain F, Crystal Structure Of Gad1 From Arabidopsis Thaliana
Length = 502
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/503 (73%), Positives = 427/503 (84%), Gaps = 6/503 (1%)
Query: 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
MV+S ++S + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61 ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGH YGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360
+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC N LREGLEK
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK 360
Query: 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVV 420
T RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV
Sbjct: 361 TERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVV 420
Query: 421 VREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRE 477
+REDFSR+L ERL+ IE+V++E++ LPSRV K + + +E+ D +KKS +
Sbjct: 421 IREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDID 479
Query: 478 TQEEVTRHWKRFVKGRR--AGAC 498
Q ++ WK+FV R+ +G C
Sbjct: 480 KQRDIITGWKKFVADRKKTSGIC 502
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/447 (44%), Positives = 275/447 (61%), Gaps = 7/447 (1%)
Query: 8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
TD R E+L S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F T
Sbjct: 7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
W + KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GS
Sbjct: 67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
SEA ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
M+P + +E DENTI V G T TG +E + LHD L K +TG D +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366
LG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365
Query: 367 LSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421
+ D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++
Sbjct: 366 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMC 425
Query: 422 REDFSRSLVERLISHIEEVLKEIESLP 448
R F E L+ + LK + P
Sbjct: 426 RRGFEMDFAELLLEDYKASLKYLSDHP 452
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/447 (44%), Positives = 275/447 (61%), Gaps = 7/447 (1%)
Query: 8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
TD R E+L S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F T
Sbjct: 7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
W + KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GS
Sbjct: 67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
SEA ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
M+P + +E DENTI V G T TG +E + LHD L K +TG D +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366
LG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365
Query: 367 LSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421
+ D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++
Sbjct: 366 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMC 425
Query: 422 REDFSRSLVERLISHIEEVLKEIESLP 448
R F E L+ + LK + P
Sbjct: 426 RRGFEMDFAELLLEDYKASLKYLSDHP 452
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/438 (44%), Positives = 269/438 (61%), Gaps = 6/438 (1%)
Query: 16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW + KL
Sbjct: 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61
Query: 76 VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA ML G+
Sbjct: 62 MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121
Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKA 195
A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G M+P +
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180
Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
+E DENTI V G T TG +E + LHD L K +TG D +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240
Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++YLG TF
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300
Query: 316 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVG 372
+NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 360
Query: 373 VPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLV 430
+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F
Sbjct: 361 IPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFA 420
Query: 431 ERLISHIEEVLKEIESLP 448
E L+ + LK + P
Sbjct: 421 ELLLEDYKASLKYLSDHP 438
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 146/376 (38%), Gaps = 27/376 (7%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGXPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ HKYG G +++R D L + ++ G + T
Sbjct: 292 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V V
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAV 411
Query: 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISH 436
A S ++++ E + GW + P LR +V+R ++
Sbjct: 412 A-----SDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLR-----HTEPGVVDRFLAD 461
Query: 437 IEEVLKEIESLPSRVS 452
+++ + ++ + P + +
Sbjct: 462 LQDAVAQVRAHPEKAT 477
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 146/376 (38%), Gaps = 27/376 (7%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ HKYG G +++R D L + ++ G + T
Sbjct: 296 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V V
Sbjct: 356 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAV 415
Query: 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISH 436
A S ++++ E + GW + P LR +V+R ++
Sbjct: 416 A-----SDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLR-----HTEPGVVDRFLAD 465
Query: 437 IEEVLKEIESLPSRVS 452
+++ + ++ + P + +
Sbjct: 466 LQDAVAQVRAHPEKAT 481
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 145/376 (38%), Gaps = 27/376 (7%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ H YG G +++R D L + ++ G + T
Sbjct: 292 PVPPFDFRLEGVTSVSADTHAYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V V
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAV 411
Query: 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISH 436
A S ++++ E + GW + P LR +V+R ++
Sbjct: 412 A-----SDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLR-----HTEPGVVDRFLAD 461
Query: 437 IEEVLKEIESLPSRVS 452
+++ + ++ + P + +
Sbjct: 462 LQDAVAQVRAHPEKAT 477
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 145/376 (38%), Gaps = 27/376 (7%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ H YG G +++R D L + ++ G + T
Sbjct: 296 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V V
Sbjct: 356 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAV 415
Query: 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISH 436
A S ++++ E + GW + P LR +V+R ++
Sbjct: 416 A-----SDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLR-----HTEPGVVDRFLAD 465
Query: 437 IEEVLKEIESLPSRVS 452
+++ + ++ + P + +
Sbjct: 466 LQDAVAQVRAHPEKAT 481
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 145/376 (38%), Gaps = 27/376 (7%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ H YG G +++R D L + ++ G + T
Sbjct: 292 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V V
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAV 411
Query: 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISH 436
A S ++++ E + GW + P LR +V+R ++
Sbjct: 412 A-----SDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLR-----HTEPGVVDRFLAD 461
Query: 437 IEEVLKEIESLPSRVS 452
+++ + ++ + P + +
Sbjct: 462 LQDAVAQVRAHPEKAT 477
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 174/397 (43%), Gaps = 39/397 (9%)
Query: 83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
N + D +P ++++ V+M+ +FN P T G T G +E+++LA L+ K
Sbjct: 95 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
R +P I+ ++K A YF Y ++ K + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
T+ + + G +D++ L + K + P+HVD+ G FI F+ Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
L DFR+P V SI+ HKYG G +++R D + + + G + TL
Sbjct: 261 LPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-GVP-- 374
S+ + ++ + + +G GY + +G A ++ +++ I D+ G P
Sbjct: 321 GSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN----IPDLDIMGNPRY 376
Query: 375 -LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRV---VVREDFSRSLV 430
+++FS K + H E+S+ L K GW A P A ++A R+ VV E +
Sbjct: 377 SVISFSSKTLNIH---ELSDRLSKKGWHFNALQKPV-ALHMAFTRLSAHVVDE-----IC 427
Query: 431 ERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQG 467
+ L + ++E+ E S PS T + + +T G
Sbjct: 428 DILRTTVQELKSESNSKPSPDGTSALYGVAGSVKTAG 464
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/397 (23%), Positives = 173/397 (43%), Gaps = 39/397 (9%)
Query: 83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
N + D +P ++++ V+M+ +FN P T G T G +E+++LA L+ K
Sbjct: 95 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
R +P I+ ++K A YF Y ++ K + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
T+ + + G +D++ L + K + P+HVD+ G FI F+ Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
L DFR+P V SI+ H YG G +++R D + + + G + TL
Sbjct: 261 LPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-GVP-- 374
S+ + ++ + + +G GY + +G A ++ +++ I D+ G P
Sbjct: 321 GSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN----IPDLDIMGNPRY 376
Query: 375 -LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRV---VVREDFSRSLV 430
+++FS K + H E+S+ L K GW A P A ++A R+ VV E +
Sbjct: 377 SVISFSSKTLNIH---ELSDRLSKKGWHFNALQKPV-ALHMAFTRLSAHVVDE-----IC 427
Query: 431 ERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQG 467
+ L + ++E+ E S PS T + + +T G
Sbjct: 428 DILRTTVQELKSESNSKPSPDGTSALYGVAGSVKTAG 464
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 153/402 (38%), Gaps = 76/402 (18%)
Query: 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129
P K+V + N D + T L+ + V ++ L N +K A G G +EA
Sbjct: 44 PITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN-----NKDAYGHIVSGGTEA 98
Query: 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYV 189
+ A K W++KR++ + P I+ +EK Y+
Sbjct: 99 NLXALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREXXDLE----------YI 148
Query: 190 MNPVKAVELVDENTI----------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
P+K +DE + + I G+T G ++++ L + + N
Sbjct: 149 YAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENN------I 202
Query: 240 PIHVDAASGGFIAPFLYP-------DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT 292
IHVDAA GG + PFL + ++DF L V SI + HK G G ++++
Sbjct: 203 YIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLG-VDSITIDPHKXGHCPIPSGGILFKD 261
Query: 293 KDDLPDELVFHINYLGSDQPTFT-----------LNFSKGSSQIIAQYYQFIRLGFEGYK 341
+ + YL D P T + F + + +Y LG EG +
Sbjct: 262 --------IGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY-----LGREGQR 308
Query: 342 NIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWI 401
I+ C N L + L K F+ + + + + +VA +D E+ + LR G
Sbjct: 309 KIVNECXENTLYLYKKL-KENNFKPVIEPI-LNIVAIEDEDYK-----EVCKKLRDRGIY 361
Query: 402 VPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443
V V LR+VV R ++ I + + ++
Sbjct: 362 VSVCNC------VKALRIVVXPHIKREHIDNFIEILNSIKRD 397
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 197 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256
+LVDE+T V+ + + G + V+ + ++ KKN+E T +HVDA PF
Sbjct: 134 KLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKE----TLVHVDAVQTIGKIPFSL 189
Query: 257 PDLEWDFRLPLVKSINVSGHKY 278
LE D+ + S HK+
Sbjct: 190 EKLEVDY-------ASFSAHKF 204
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 197 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256
+LVDE+T V+ + G + V+ + ++ KKN+E T +HVDA PF
Sbjct: 134 KLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKE----TLVHVDAVQTIGKIPFSL 189
Query: 257 PDLEWDFRLPLVKSINVSGHKY 278
LE D+ + S HK+
Sbjct: 190 EKLEVDY-------ASFSAHKF 204
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 26/154 (16%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIME 345
V W T+ DL D+ V +IN LGS D T G I AQ + G Y +I
Sbjct: 110 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI-- 167
Query: 346 NCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAY 405
A+ G+ F L ++ G LV + + E + L+ G+
Sbjct: 168 -----PGAVEYGITSDDLFS-LDREPGKTLVV-----GAGYIGLECAGFLKGLGY----- 211
Query: 406 TMPANAENVAVLRVVVREDFSRSLVERLISHIEE 439
E ++R +V F + + E + + +EE
Sbjct: 212 ------EPTVMVRSIVLRGFDQQMAELVAASMEE 239
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 26/154 (16%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIME 345
V W T+ DL D+ V +IN LGS D T G I AQ + G Y +I
Sbjct: 106 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI-- 163
Query: 346 NCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAY 405
A+ G+ F L ++ G LV + + E + L+ G+
Sbjct: 164 -----PGAVEYGITSDDLFS-LDREPGKTLVV-----GAGYIGLECAGFLKGLGY----- 207
Query: 406 TMPANAENVAVLRVVVREDFSRSLVERLISHIEE 439
E ++R +V F + + E + + +EE
Sbjct: 208 ------EPTVMVRSIVLRGFDQQMAELVAASMEE 235
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 38/198 (19%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIME 345
V W T+ DL D+ V +IN LGS D T G I AQ + G Y +I
Sbjct: 110 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI-- 167
Query: 346 NCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAY 405
A+ G+ F L ++ G LV + + E + L+ G+
Sbjct: 168 -----PGAVEYGITSDDLFS-LDREPGKTLVV-----GAGYIGLECAGFLKGLGY----- 211
Query: 406 TMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNET 465
E ++R +V F + + E + + +EE +P T +P+ E
Sbjct: 212 ------EPTVMVRSIVLRGFDQQMAELVAASMEE-----RGIPFLRKT-----VPLSVEK 255
Query: 466 QGDKPL--KKSVRETQEE 481
Q D L K ET EE
Sbjct: 256 QDDGKLLVKYKNVETGEE 273
>pdb|3H2B|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
pdb|3H2B|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
Length = 203
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 404 AYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVN 463
AY+ P + V+ ED R L+E + ++ V+ ++ S R T H+ + +
Sbjct: 8 AYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGR---WTGHLASLGH 64
Query: 464 ETQGDKPLKKSV---RETQEEVTRH 485
+ +G +P + V R+T VT H
Sbjct: 65 QIEGLEPATRLVELARQTHPSVTFH 89
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 371 VGVPLVAFSLKDSSAHTVFEIS-EGLRKFGWIVPAY-TMPANAENVAV--LRVVVREDFS 426
+G ++ L DS +F I +G+++ + + + E+V + L+ VV+E F+
Sbjct: 440 LGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFN 499
Query: 427 RSLVERLISHIEEVLKE 443
+S VE I++IE +LKE
Sbjct: 500 KSAVEASINNIEFILKE 516
>pdb|1KMI|Z Chain Z, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 214
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 390 EISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445
E+ R+F VPA+T NA+ +L++++ +DF + L ++I + +V++EIE
Sbjct: 109 ELVTDTRQFLADVPAHTSFTNAQ---LLKIMMAQDF-QDLTGQVIKRMMDVIQEIE 160
>pdb|1I1G|A Chain A, Crystal Structure Of The Lrp-Like Transcriptional
Regulator From The Archaeon Pyrococcus Furiosus
pdb|1I1G|B Chain B, Crystal Structure Of The Lrp-Like Transcriptional
Regulator From The Archaeon Pyrococcus Furiosus
Length = 141
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 352 RALRE-GLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN 410
+AL E G+ + +I K +G LV + D+ +FE++E L+++ ++ Y +
Sbjct: 40 KALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGD 99
Query: 411 AENVAVLRVVVREDFSRSLVERLISHIEEVLK 442
+AV+ ED + ++ I IE V K
Sbjct: 100 HMIMAVIWAKDGEDLAE-IISNKIGKIEGVTK 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,527,195
Number of Sequences: 62578
Number of extensions: 604549
Number of successful extensions: 1457
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1425
Number of HSP's gapped (non-prelim): 24
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)