Query 010897
Match_columns 498
No_of_seqs 320 out of 2713
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbx_A GAD 1, glutamate decarb 100.0 3.5E-67 1.2E-71 552.7 50.0 497 1-498 1-502 (502)
2 2dgk_A GAD-beta, GADB, glutama 100.0 9.8E-55 3.4E-59 452.8 47.9 433 16-449 2-439 (452)
3 3k40_A Aromatic-L-amino-acid d 100.0 3.5E-49 1.2E-53 412.7 40.5 413 14-445 29-472 (475)
4 4e1o_A HDC, histidine decarbox 100.0 3.8E-49 1.3E-53 413.4 38.6 414 14-445 34-479 (481)
5 3vp6_A Glutamate decarboxylase 100.0 5.8E-46 2E-50 391.7 40.8 410 16-444 51-505 (511)
6 1js3_A DDC;, DOPA decarboxylas 100.0 7.3E-46 2.5E-50 389.4 36.4 415 14-446 29-476 (486)
7 2okj_A Glutamate decarboxylase 100.0 1.7E-44 5.6E-49 380.7 40.2 411 14-443 46-501 (504)
8 2qma_A Diaminobutyrate-pyruvat 100.0 4E-43 1.4E-47 369.5 39.7 403 18-443 59-495 (497)
9 2jis_A Cysteine sulfinic acid 100.0 6.8E-43 2.3E-47 369.2 39.6 408 14-442 65-513 (515)
10 3mc6_A Sphingosine-1-phosphate 100.0 3.3E-41 1.1E-45 355.0 36.6 392 30-449 36-442 (497)
11 3mad_A Sphingosine-1-phosphate 100.0 1.7E-38 5.9E-43 335.6 39.7 395 30-450 69-475 (514)
12 3f9t_A TDC, L-tyrosine decarbo 100.0 9.1E-38 3.1E-42 317.7 42.2 384 31-442 4-396 (397)
13 2z67_A O-phosphoseryl-tRNA(SEC 100.0 4.5E-36 1.5E-40 312.3 23.2 375 22-441 48-455 (456)
14 4hvk_A Probable cysteine desul 100.0 2.2E-30 7.5E-35 261.8 35.4 342 66-447 10-376 (382)
15 3bc8_A O-phosphoseryl-tRNA(SEC 100.0 1.7E-31 5.8E-36 271.5 26.7 381 24-446 15-445 (450)
16 1wyu_B Glycine dehydrogenase s 100.0 1.1E-29 3.9E-34 265.3 35.9 379 30-443 40-440 (474)
17 4eb5_A Probable cysteine desul 100.0 1E-29 3.4E-34 257.4 33.8 342 66-447 10-376 (382)
18 3nnk_A Ureidoglycine-glyoxylat 100.0 5.7E-30 1.9E-34 262.0 30.6 336 65-444 21-390 (411)
19 2dr1_A PH1308 protein, 386AA l 100.0 1.1E-29 3.7E-34 257.5 28.7 337 65-445 28-380 (386)
20 3isl_A Purine catabolism prote 100.0 1.5E-29 5.3E-34 259.2 29.9 315 91-444 40-390 (416)
21 1eg5_A Aminotransferase; PLP-d 100.0 2.6E-28 8.9E-33 247.1 36.4 341 67-447 12-379 (384)
22 1elu_A L-cysteine/L-cystine C- 100.0 2.9E-29 9.8E-34 254.8 29.4 329 67-439 27-387 (390)
23 3lvm_A Cysteine desulfurase; s 100.0 3.4E-28 1.2E-32 250.0 37.3 344 66-448 32-403 (423)
24 3zrp_A Serine-pyruvate aminotr 100.0 2.5E-29 8.5E-34 254.5 28.4 335 65-445 10-364 (384)
25 2z9v_A Aspartate aminotransfer 100.0 6.2E-29 2.1E-33 252.8 29.9 335 65-444 17-371 (392)
26 2huf_A Alanine glyoxylate amin 100.0 6.5E-29 2.2E-33 252.7 29.6 336 65-445 27-384 (393)
27 1t3i_A Probable cysteine desul 100.0 4.4E-29 1.5E-33 256.0 28.2 355 58-446 30-415 (420)
28 2yrr_A Aminotransferase, class 100.0 2.5E-29 8.5E-34 251.4 25.6 333 65-442 8-351 (353)
29 1iug_A Putative aspartate amin 100.0 4E-29 1.4E-33 250.1 26.9 332 65-444 9-348 (352)
30 3kgw_A Alanine-glyoxylate amin 100.0 1.1E-28 3.7E-33 250.6 28.9 337 65-445 31-389 (393)
31 1kmj_A Selenocysteine lyase; p 100.0 2.3E-28 7.8E-33 249.4 30.3 345 65-444 32-405 (406)
32 3ffr_A Phosphoserine aminotran 100.0 1.1E-28 3.8E-33 247.8 27.2 332 66-441 13-361 (362)
33 1vjo_A Alanine--glyoxylate ami 100.0 2.6E-28 8.8E-33 248.4 30.0 333 65-441 42-392 (393)
34 2ch1_A 3-hydroxykynurenine tra 100.0 3.9E-28 1.3E-32 247.2 30.4 336 66-445 27-384 (396)
35 3cai_A Possible aminotransfera 100.0 1.8E-28 6.3E-33 250.6 26.6 338 66-439 36-404 (406)
36 3dzz_A Putative pyridoxal 5'-p 100.0 5.9E-28 2E-32 245.3 29.9 336 67-443 40-388 (391)
37 3f0h_A Aminotransferase; RER07 100.0 4.8E-28 1.6E-32 244.8 29.0 334 65-442 27-372 (376)
38 1m32_A 2-aminoethylphosphonate 100.0 2.7E-28 9.2E-33 245.1 27.0 335 65-442 12-363 (366)
39 3vax_A Putative uncharacterize 100.0 2.8E-28 9.5E-33 248.6 26.9 341 66-442 30-398 (400)
40 3e9k_A Kynureninase; kynurenin 100.0 1.3E-28 4.5E-33 256.6 24.3 312 91-443 107-460 (465)
41 3g0t_A Putative aminotransfera 100.0 3.6E-27 1.2E-31 243.4 32.3 368 39-442 28-435 (437)
42 2w8t_A SPT, serine palmitoyltr 100.0 4.9E-27 1.7E-31 242.1 31.3 340 59-447 68-418 (427)
43 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 3.8E-28 1.3E-32 245.0 21.3 328 67-443 20-369 (371)
44 1j32_A Aspartate aminotransfer 100.0 1.8E-27 6.3E-32 241.8 25.6 346 54-444 29-387 (388)
45 3ffh_A Histidinol-phosphate am 100.0 7.6E-27 2.6E-31 235.0 29.5 317 67-440 45-362 (363)
46 1wyu_A Glycine dehydrogenase ( 100.0 2.1E-26 7.2E-31 238.1 33.5 360 29-441 38-437 (438)
47 3ele_A Amino transferase; RER0 100.0 2.7E-27 9.2E-32 241.4 26.1 342 58-445 38-397 (398)
48 1xi9_A Putative transaminase; 100.0 6.9E-27 2.3E-31 239.2 29.2 349 54-444 37-403 (406)
49 3h14_A Aminotransferase, class 100.0 2.1E-26 7.3E-31 234.2 32.6 359 39-443 16-381 (391)
50 3get_A Histidinol-phosphate am 100.0 5.7E-27 1.9E-31 236.1 27.8 316 67-441 43-364 (365)
51 3a2b_A Serine palmitoyltransfe 100.0 2.2E-27 7.5E-32 242.1 24.9 326 68-444 58-392 (398)
52 3hl2_A O-phosphoseryl-tRNA(SEC 100.0 4.1E-27 1.4E-31 235.7 26.1 391 23-450 32-467 (501)
53 3dyd_A Tyrosine aminotransfera 100.0 2.2E-26 7.7E-31 237.1 31.8 352 57-445 56-425 (427)
54 3tqx_A 2-amino-3-ketobutyrate 100.0 1.5E-27 5.1E-32 243.0 22.6 328 68-444 58-396 (399)
55 3e77_A Phosphoserine aminotran 100.0 1.5E-27 5E-32 240.0 21.9 336 65-443 21-374 (377)
56 2bkw_A Alanine-glyoxylate amin 100.0 1.7E-27 5.7E-32 241.3 22.5 342 65-443 13-383 (385)
57 3nra_A Aspartate aminotransfer 100.0 3E-27 1E-31 241.5 23.5 346 58-445 42-406 (407)
58 4dq6_A Putative pyridoxal phos 100.0 2.1E-26 7.1E-31 233.9 28.9 331 67-441 45-390 (391)
59 1o4s_A Aspartate aminotransfer 100.0 1.3E-26 4.5E-31 235.8 27.2 338 54-441 40-386 (389)
60 3a9z_A Selenocysteine lyase; P 100.0 7.4E-26 2.5E-30 233.3 32.4 354 66-446 28-430 (432)
61 2gb3_A Aspartate aminotransfer 100.0 9.1E-27 3.1E-31 238.6 25.2 340 58-445 46-403 (409)
62 3ly1_A Putative histidinol-pho 100.0 2.2E-26 7.5E-31 230.8 27.4 315 67-442 29-350 (354)
63 1qz9_A Kynureninase; kynurenin 100.0 4.8E-26 1.6E-30 233.4 29.8 332 67-443 39-401 (416)
64 1rv3_A Serine hydroxymethyltra 99.9 2.6E-26 8.8E-31 240.3 27.4 367 41-443 31-430 (483)
65 1gd9_A Aspartate aminotransfer 99.9 2.6E-26 8.8E-31 233.4 26.5 337 67-444 39-386 (389)
66 2o0r_A RV0858C (N-succinyldiam 99.9 2.1E-26 7.3E-31 235.9 26.2 336 67-441 38-393 (411)
67 3euc_A Histidinol-phosphate am 99.9 1.6E-26 5.3E-31 233.1 24.7 318 67-441 43-365 (367)
68 1b9h_A AHBA synthase, protein 99.9 3.5E-26 1.2E-30 232.4 27.4 332 69-443 16-387 (388)
69 1bw0_A TAT, protein (tyrosine 99.9 1.4E-25 4.9E-30 230.0 32.0 342 66-444 49-413 (416)
70 3qm2_A Phosphoserine aminotran 99.9 1.3E-27 4.3E-32 241.7 16.3 332 64-443 34-384 (386)
71 3kax_A Aminotransferase, class 99.9 6.4E-26 2.2E-30 229.6 28.7 342 58-441 27-382 (383)
72 1fc4_A 2-amino-3-ketobutyrate 99.9 2.2E-26 7.5E-31 234.8 25.3 342 54-445 44-398 (401)
73 3l8a_A METC, putative aminotra 99.9 4.7E-26 1.6E-30 234.2 27.9 348 55-442 61-420 (421)
74 2zc0_A Alanine glyoxylate tran 99.9 5.8E-26 2E-30 232.1 28.2 347 56-444 35-404 (407)
75 3ftb_A Histidinol-phosphate am 99.9 1.4E-25 4.9E-30 225.3 30.5 315 67-442 39-359 (361)
76 1v72_A Aldolase; PLP-dependent 99.9 1.3E-26 4.4E-31 232.3 22.7 325 60-443 12-352 (356)
77 1u08_A Hypothetical aminotrans 99.9 5.8E-26 2E-30 230.6 27.8 333 67-438 43-384 (386)
78 1b5p_A Protein (aspartate amin 99.9 6.9E-26 2.4E-30 230.2 28.3 336 58-440 34-381 (385)
79 1svv_A Threonine aldolase; str 99.9 1.1E-26 3.7E-31 232.9 21.5 319 67-443 25-357 (359)
80 2fnu_A Aminotransferase; prote 99.9 3.2E-26 1.1E-30 231.2 25.1 335 65-444 8-372 (375)
81 1v2d_A Glutamine aminotransfer 99.9 7.8E-26 2.7E-30 229.2 27.3 328 67-446 38-373 (381)
82 2c0r_A PSAT, phosphoserine ami 99.9 6.7E-26 2.3E-30 228.1 26.5 329 65-443 12-360 (362)
83 3aow_A Putative uncharacterize 99.9 2.1E-25 7.2E-30 231.3 30.7 342 58-444 79-445 (448)
84 3kki_A CAI-1 autoinducer synth 99.9 7.2E-26 2.4E-30 231.9 26.8 326 67-443 73-403 (409)
85 1c7n_A Cystalysin; transferase 99.9 1.2E-25 4.3E-30 229.1 28.3 336 67-445 44-394 (399)
86 2x5d_A Probable aminotransfera 99.9 3E-25 1E-29 227.5 31.0 352 53-446 35-400 (412)
87 2z61_A Probable aspartate amin 99.9 7.9E-26 2.7E-30 228.3 25.9 334 54-441 28-368 (370)
88 2dou_A Probable N-succinyldiam 99.9 1.7E-25 5.9E-30 226.3 27.9 346 53-441 23-375 (376)
89 3cq5_A Histidinol-phosphate am 99.9 5.4E-25 1.8E-29 222.2 31.2 316 67-441 43-365 (369)
90 3m5u_A Phosphoserine aminotran 99.9 2.6E-26 9.1E-31 230.0 21.1 330 65-443 13-359 (361)
91 1vp4_A Aminotransferase, putat 99.9 1.3E-25 4.3E-30 231.3 26.7 334 68-445 59-419 (425)
92 3ke3_A Putative serine-pyruvat 99.9 1.8E-25 6.1E-30 226.7 26.0 315 90-445 30-377 (379)
93 1bs0_A Protein (8-amino-7-oxon 99.9 1.8E-25 6.1E-30 226.8 25.5 324 67-440 53-383 (384)
94 1d2f_A MALY protein; aminotran 99.9 8.6E-25 3E-29 222.2 30.6 335 67-443 41-388 (390)
95 3jtx_A Aminotransferase; NP_28 99.9 3E-25 1E-29 225.9 27.1 348 54-441 29-395 (396)
96 2c81_A Glutamine-2-deoxy-scyll 99.9 2.4E-25 8.2E-30 228.7 26.4 339 68-443 14-413 (418)
97 1yiz_A Kynurenine aminotransfe 99.9 4.7E-25 1.6E-29 227.2 28.2 337 67-441 50-426 (429)
98 3dr4_A Putative perosamine syn 99.9 6E-26 2E-30 231.0 20.9 329 70-441 36-390 (391)
99 3fdb_A Beta C-S lyase, putativ 99.9 5.4E-25 1.8E-29 222.4 27.6 344 53-442 21-374 (377)
100 1lc5_A COBD, L-threonine-O-3-p 99.9 8.4E-25 2.9E-29 220.3 28.8 319 67-445 37-361 (364)
101 2zyj_A Alpha-aminodipate amino 99.9 3E-25 1E-29 226.3 25.2 328 68-445 48-394 (397)
102 2o1b_A Aminotransferase, class 99.9 2.9E-25 1E-29 227.1 24.4 342 58-442 50-401 (404)
103 3tcm_A Alanine aminotransferas 99.9 7E-25 2.4E-29 230.4 27.6 334 70-445 109-495 (500)
104 3b46_A Aminotransferase BNA3; 99.9 4E-25 1.4E-29 229.2 24.7 348 54-439 56-442 (447)
105 2fyf_A PSAT, phosphoserine ami 99.9 5.8E-25 2E-29 224.3 24.6 328 65-442 48-396 (398)
106 2po3_A 4-dehydrase; external a 99.9 2E-24 6.8E-29 222.3 28.0 342 68-454 30-396 (424)
107 2dkj_A Serine hydroxymethyltra 99.9 6.5E-25 2.2E-29 224.2 24.0 331 69-443 36-387 (407)
108 3frk_A QDTB; aminotransferase, 99.9 1.1E-25 3.9E-30 227.4 18.2 323 69-442 16-366 (373)
109 1w23_A Phosphoserine aminotran 99.9 2.5E-25 8.5E-30 223.4 20.3 331 66-442 12-358 (360)
110 2a7v_A Serine hydroxymethyltra 99.9 3.1E-24 1.1E-28 223.0 28.5 364 41-445 41-442 (490)
111 3op7_A Aminotransferase class 99.9 2.2E-24 7.5E-29 218.0 26.5 317 75-443 47-370 (375)
112 3uwc_A Nucleotide-sugar aminot 99.9 2.3E-25 7.9E-30 225.0 18.9 321 72-443 21-370 (374)
113 2bwn_A 5-aminolevulinate synth 99.9 1.6E-24 5.5E-29 221.1 25.2 326 68-443 61-399 (401)
114 1fg7_A Histidinol phosphate am 99.9 2.9E-24 9.9E-29 215.9 26.7 284 99-439 62-353 (356)
115 1mdo_A ARNB aminotransferase; 99.9 2E-24 6.7E-29 219.6 25.4 329 69-443 19-385 (393)
116 2vi8_A Serine hydroxymethyltra 99.9 1.1E-24 3.8E-29 222.3 23.6 331 69-444 36-387 (405)
117 3piu_A 1-aminocyclopropane-1-c 99.9 2.2E-24 7.5E-29 222.7 26.0 356 52-445 33-433 (435)
118 3ezs_A Aminotransferase ASPB; 99.9 5.2E-24 1.8E-28 215.2 27.7 336 56-442 24-373 (376)
119 3p1t_A Putative histidinol-pho 99.9 2.4E-24 8E-29 214.3 24.7 306 65-441 27-334 (337)
120 3hdo_A Histidinol-phosphate am 99.9 2.8E-24 9.4E-29 216.2 25.4 311 67-442 39-353 (360)
121 2oga_A Transaminase; PLP-depen 99.9 1.1E-24 3.6E-29 222.5 21.1 326 70-444 44-396 (399)
122 3n0l_A Serine hydroxymethyltra 99.9 2.6E-23 9E-28 212.9 31.6 332 68-443 37-388 (417)
123 1jg8_A L-ALLO-threonine aldola 99.9 5.9E-25 2E-29 219.7 18.5 320 65-443 13-345 (347)
124 3fvs_A Kynurenine--oxoglutarat 99.9 2.4E-24 8.2E-29 221.2 23.3 346 58-442 31-420 (422)
125 3qgu_A LL-diaminopimelate amin 99.9 3.7E-23 1.3E-27 214.3 31.5 356 40-443 53-439 (449)
126 1iay_A ACC synthase 2, 1-amino 99.9 6.5E-24 2.2E-28 218.6 25.2 310 92-442 84-425 (428)
127 3b8x_A WBDK, pyridoxamine 5-ph 99.9 2.4E-23 8.2E-28 211.7 28.4 334 67-437 12-389 (390)
128 3ju7_A Putative PLP-dependent 99.9 7.3E-24 2.5E-28 214.7 24.3 330 67-443 13-374 (377)
129 3fkd_A L-threonine-O-3-phospha 99.9 7.1E-24 2.4E-28 212.3 24.0 321 55-442 15-340 (350)
130 2x5f_A Aspartate_tyrosine_phen 99.9 3.7E-24 1.2E-28 220.6 21.9 323 73-444 69-429 (430)
131 3ecd_A Serine hydroxymethyltra 99.9 5E-23 1.7E-27 211.3 30.3 334 68-444 44-397 (425)
132 3e2y_A Kynurenine-oxoglutarate 99.9 1.8E-23 6E-28 213.8 26.5 343 58-438 26-407 (410)
133 1o69_A Aminotransferase; struc 99.9 1.8E-23 6E-28 213.1 26.1 327 70-442 12-385 (394)
134 2r2n_A Kynurenine/alpha-aminoa 99.9 9.2E-23 3.2E-27 209.9 31.5 320 87-443 74-423 (425)
135 3ihj_A Alanine aminotransferas 99.9 1.3E-23 4.4E-28 220.5 25.5 323 85-445 123-494 (498)
136 3rq1_A Aminotransferase class 99.9 3.7E-24 1.2E-28 219.7 20.3 330 67-445 56-416 (418)
137 2x3l_A ORN/Lys/Arg decarboxyla 99.9 2E-24 6.9E-29 223.6 17.5 291 96-444 58-353 (446)
138 3g7q_A Valine-pyruvate aminotr 99.9 1.6E-23 5.6E-28 214.6 23.8 368 42-445 17-414 (417)
139 1c4k_A Protein (ornithine deca 99.9 1.6E-23 5.5E-28 227.0 24.2 309 97-445 175-567 (730)
140 2cb1_A O-acetyl homoserine sul 99.9 1.7E-22 5.7E-27 207.2 29.9 293 96-438 57-410 (412)
141 3if2_A Aminotransferase; YP_26 99.9 3.5E-23 1.2E-27 214.1 24.9 353 59-445 36-441 (444)
142 3ruy_A Ornithine aminotransfer 99.9 1.9E-22 6.4E-27 205.1 28.8 318 68-441 53-391 (392)
143 3gbx_A Serine hydroxymethyltra 99.9 8.9E-23 3.1E-27 209.1 26.5 333 68-443 42-395 (420)
144 3ez1_A Aminotransferase MOCR f 99.9 9.2E-23 3.1E-27 209.6 26.5 342 58-445 28-416 (423)
145 1e5e_A MGL, methionine gamma-l 99.9 8.4E-23 2.9E-27 208.8 25.7 287 96-444 63-395 (404)
146 3lws_A Aromatic amino acid bet 99.9 2.1E-23 7.1E-28 209.4 19.6 293 99-438 51-353 (357)
147 2vyc_A Biodegradative arginine 99.9 9.1E-23 3.1E-27 223.0 26.0 305 98-445 208-606 (755)
148 3pj0_A LMO0305 protein; struct 99.9 1.6E-23 5.5E-28 210.2 18.4 319 68-437 27-355 (359)
149 3nyt_A Aminotransferase WBPE; 99.9 3.5E-23 1.2E-27 208.8 20.8 318 69-439 15-359 (367)
150 3t18_A Aminotransferase class 99.9 8.7E-23 3E-27 209.1 23.8 325 67-445 55-411 (413)
151 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 2E-22 6.8E-27 208.2 26.2 337 68-441 41-433 (437)
152 4f4e_A Aromatic-amino-acid ami 99.9 7.3E-23 2.5E-27 210.3 21.7 330 67-441 67-419 (420)
153 3ppl_A Aspartate aminotransfer 99.9 2E-22 6.9E-27 207.4 25.0 314 87-444 74-420 (427)
154 3fsl_A Aromatic-amino-acid ami 99.9 4.6E-23 1.6E-27 209.8 19.2 327 67-440 44-396 (397)
155 2ord_A Acoat, acetylornithine 99.9 8.2E-22 2.8E-26 200.8 28.3 318 68-443 57-396 (397)
156 1uu1_A Histidinol-phosphate am 99.9 1.3E-22 4.5E-27 201.9 21.6 297 67-439 32-333 (335)
157 1vef_A Acetylornithine/acetyl- 99.9 5.3E-22 1.8E-26 202.0 26.4 318 68-441 62-394 (395)
158 3ei9_A LL-diaminopimelate amin 99.9 1.3E-21 4.5E-26 201.6 29.3 356 39-439 39-423 (432)
159 3h7f_A Serine hydroxymethyltra 99.9 2.1E-21 7.2E-26 201.1 30.0 334 68-444 57-414 (447)
160 1gc0_A Methionine gamma-lyase; 99.9 3.4E-22 1.2E-26 203.9 23.7 286 95-439 65-396 (398)
161 2rfv_A Methionine gamma-lyase; 99.9 2.4E-22 8.1E-27 205.0 22.3 291 94-439 63-395 (398)
162 3d6k_A Putative aminotransfera 99.9 4.2E-22 1.5E-26 204.8 24.4 344 58-444 35-418 (422)
163 1ajs_A Aspartate aminotransfer 99.9 1.8E-22 6.2E-27 206.6 21.1 347 54-443 29-410 (412)
164 2eh6_A Acoat, acetylornithine 99.9 5.9E-22 2E-26 200.0 24.0 317 68-440 45-374 (375)
165 4adb_A Succinylornithine trans 99.9 1.9E-21 6.6E-26 198.4 27.7 326 68-446 56-402 (406)
166 3b1d_A Betac-S lyase; HET: PLP 99.8 3.9E-25 1.3E-29 225.1 0.0 331 67-441 44-390 (392)
167 3asa_A LL-diaminopimelate amin 99.9 9.2E-22 3.1E-26 200.7 24.7 355 39-443 16-392 (400)
168 1qgn_A Protein (cystathionine 99.9 1.3E-21 4.5E-26 201.6 24.8 288 95-443 114-444 (445)
169 1ax4_A Tryptophanase; tryptoph 99.9 8.7E-22 3E-26 205.0 23.5 340 70-448 55-445 (467)
170 2ez2_A Beta-tyrosinase, tyrosi 99.9 4.1E-21 1.4E-25 199.3 28.3 345 54-447 41-434 (456)
171 2pb2_A Acetylornithine/succiny 99.9 6.8E-21 2.3E-25 195.7 27.5 338 53-444 55-418 (420)
172 3ri6_A O-acetylhomoserine sulf 99.9 1.2E-21 4.2E-26 201.2 21.7 294 98-441 85-429 (430)
173 2aeu_A Hypothetical protein MJ 99.9 3.7E-21 1.3E-25 194.6 24.4 339 42-445 14-372 (374)
174 3nx3_A Acoat, acetylornithine 99.9 1.7E-20 5.9E-25 190.9 29.4 319 68-442 53-393 (395)
175 3ndn_A O-succinylhomoserine su 99.9 2E-21 7E-26 198.9 22.3 287 96-441 82-413 (414)
176 3qhx_A Cystathionine gamma-syn 99.9 2.1E-21 7.1E-26 197.7 22.1 285 97-441 68-391 (392)
177 1cs1_A CGS, protein (cystathio 99.9 6.7E-21 2.3E-25 193.4 25.7 283 97-438 54-381 (386)
178 1yaa_A Aspartate aminotransfer 99.9 3.5E-22 1.2E-26 204.5 16.2 329 67-443 47-410 (412)
179 2q7w_A Aspartate aminotransfer 99.9 2.6E-22 8.8E-27 204.2 15.0 321 67-440 44-395 (396)
180 2ay1_A Aroat, aromatic amino a 99.9 4.2E-22 1.4E-26 202.6 16.5 325 67-440 44-392 (394)
181 1pff_A Methionine gamma-lyase; 99.9 1.3E-21 4.5E-26 194.2 19.3 282 99-439 2-329 (331)
182 3i4j_A Aminotransferase, class 99.9 2.2E-20 7.4E-25 192.4 29.1 341 69-444 47-428 (430)
183 2fq6_A Cystathionine beta-lyas 99.9 4.5E-21 1.5E-25 196.3 23.0 285 98-438 85-412 (415)
184 1z7d_A Ornithine aminotransfer 99.9 5.9E-20 2E-24 189.4 31.5 338 54-444 64-429 (433)
185 3f6t_A Aspartate aminotransfer 99.9 5.1E-21 1.7E-25 202.4 23.8 354 65-446 113-527 (533)
186 1sff_A 4-aminobutyrate aminotr 99.9 2.6E-20 9E-25 191.3 28.4 330 68-445 58-425 (426)
187 3acz_A Methionine gamma-lyase; 99.9 1.4E-20 4.7E-25 191.4 25.8 282 97-442 61-387 (389)
188 7aat_A Aspartate aminotransfer 99.9 2.1E-21 7.3E-26 197.9 19.8 325 69-441 48-400 (401)
189 1s0a_A Adenosylmethionine-8-am 99.9 6.4E-20 2.2E-24 188.8 29.2 331 68-443 60-423 (429)
190 2ctz_A O-acetyl-L-homoserine s 99.9 2.1E-20 7.3E-25 192.0 23.8 296 97-441 60-420 (421)
191 2oat_A Ornithine aminotransfer 99.9 1E-19 3.5E-24 188.0 28.6 324 68-442 93-437 (439)
192 3cog_A Cystathionine gamma-lya 99.9 5E-21 1.7E-25 195.5 18.5 282 99-444 71-398 (403)
193 3dxv_A Alpha-amino-epsilon-cap 99.9 4.8E-20 1.7E-24 190.3 26.1 329 68-446 60-427 (439)
194 2eo5_A 419AA long hypothetical 99.9 1.2E-19 4.2E-24 186.2 28.5 313 69-443 61-417 (419)
195 3meb_A Aspartate aminotransfer 99.9 1.3E-20 4.6E-25 195.1 21.2 342 52-442 45-442 (448)
196 1ibj_A CBL, cystathionine beta 99.9 4.8E-21 1.6E-25 198.8 16.6 285 96-442 134-460 (464)
197 2oqx_A Tryptophanase; lyase, p 99.9 1.6E-19 5.3E-24 187.9 26.9 341 70-446 53-444 (467)
198 3k7y_A Aspartate aminotransfer 99.8 1.9E-20 6.5E-25 191.0 18.7 335 58-443 32-404 (405)
199 3n5m_A Adenosylmethionine-8-am 99.8 9.2E-19 3.1E-23 181.5 31.3 338 68-442 66-450 (452)
200 3gju_A Putative aminotransfera 99.8 8E-19 2.7E-23 182.4 30.1 345 68-445 68-457 (460)
201 4eu1_A Mitochondrial aspartate 99.8 3.9E-20 1.3E-24 189.1 19.2 336 58-441 44-408 (409)
202 1n8p_A Cystathionine gamma-lya 99.8 4.1E-20 1.4E-24 188.1 18.5 289 97-440 57-391 (393)
203 3a8u_X Omega-amino acid--pyruv 99.8 1.7E-18 5.8E-23 179.3 29.7 336 69-443 68-446 (449)
204 4a6r_A Omega transaminase; tra 99.8 1.6E-18 5.5E-23 180.0 29.4 338 68-445 67-450 (459)
205 3dod_A Adenosylmethionine-8-am 99.8 1.5E-17 5E-22 172.3 35.0 338 68-447 61-446 (448)
206 3tfu_A Adenosylmethionine-8-am 99.8 1.1E-18 3.8E-23 181.0 26.5 335 68-445 92-454 (457)
207 3n75_A LDC, lysine decarboxyla 99.8 6.3E-19 2.1E-23 189.6 24.8 301 99-445 199-561 (715)
208 1zod_A DGD, 2,2-dialkylglycine 99.8 3.8E-18 1.3E-22 175.7 29.6 331 68-444 60-432 (433)
209 4ffc_A 4-aminobutyrate aminotr 99.8 2.5E-18 8.7E-23 178.2 28.3 330 68-445 81-450 (453)
210 2cjg_A L-lysine-epsilon aminot 99.8 1.5E-18 5.3E-23 179.6 26.0 336 68-444 71-448 (449)
211 3hmu_A Aminotransferase, class 99.8 3.7E-18 1.3E-22 177.8 29.0 349 53-445 53-453 (472)
212 3nmy_A Xometc, cystathionine g 99.8 1.3E-18 4.4E-23 177.3 23.7 284 98-442 70-397 (400)
213 3bwn_A AT1G70560, L-tryptophan 99.8 7E-19 2.4E-23 178.9 19.5 294 86-442 58-385 (391)
214 3oks_A 4-aminobutyrate transam 99.8 1.4E-17 4.8E-22 172.5 29.7 326 68-442 78-449 (451)
215 2zy4_A L-aspartate beta-decarb 99.8 2.9E-18 1E-22 181.4 24.8 355 63-445 112-523 (546)
216 3i5t_A Aminotransferase; pyrid 99.8 1.1E-17 3.7E-22 174.5 28.1 340 68-446 71-456 (476)
217 3ou5_A Serine hydroxymethyltra 99.8 5E-17 1.7E-21 162.4 31.3 340 67-443 65-440 (490)
218 3l44_A Glutamate-1-semialdehyd 99.8 1E-17 3.5E-22 172.6 26.5 332 53-446 53-432 (434)
219 3fq8_A Glutamate-1-semialdehyd 99.8 1.6E-17 5.5E-22 170.7 27.8 315 68-443 69-426 (427)
220 3i16_A Aluminum resistance pro 99.8 2.2E-18 7.7E-23 176.2 20.9 250 97-399 75-356 (427)
221 3jzl_A Putative cystathionine 99.8 1.4E-18 4.6E-23 177.2 18.5 252 97-399 61-339 (409)
222 2epj_A Glutamate-1-semialdehyd 99.8 2.7E-17 9.1E-22 169.5 25.1 331 53-444 54-431 (434)
223 3k28_A Glutamate-1-semialdehyd 99.8 3.5E-17 1.2E-21 168.4 24.3 336 53-444 51-427 (429)
224 2cy8_A D-phgat, D-phenylglycin 99.8 4.5E-17 1.5E-21 168.8 24.9 317 68-446 74-437 (453)
225 2hox_A ALLIIN lyase 1; cystein 99.8 2.8E-18 9.4E-23 176.5 15.2 319 59-441 60-422 (427)
226 3hvy_A Cystathionine beta-lyas 99.8 1.5E-17 5.1E-22 170.1 20.1 251 97-399 76-356 (427)
227 1ohv_A 4-aminobutyrate aminotr 99.8 5.8E-17 2E-21 168.8 24.4 345 53-443 61-470 (472)
228 4e77_A Glutamate-1-semialdehyd 99.8 2.3E-16 7.7E-21 162.3 28.1 333 53-442 51-427 (429)
229 3ht4_A Aluminum resistance pro 99.8 1.1E-17 3.8E-22 171.8 17.2 256 95-399 65-345 (431)
230 4h51_A Aspartate aminotransfer 99.8 6.8E-17 2.3E-21 165.0 22.2 355 39-445 29-418 (420)
231 2e7u_A Glutamate-1-semialdehyd 99.7 3.9E-16 1.3E-20 160.3 22.0 310 68-440 69-423 (424)
232 2yky_A Beta-transaminase; tran 99.3 2.2E-16 7.6E-21 163.0 0.0 335 52-445 97-461 (465)
233 4ao9_A Beta-phenylalanine amin 99.5 4.1E-12 1.4E-16 130.3 21.4 333 53-446 85-448 (454)
234 4e3q_A Pyruvate transaminase; 99.4 2.3E-10 7.8E-15 118.2 30.2 355 53-444 65-468 (473)
235 4atq_A 4-aminobutyrate transam 99.3 4.2E-09 1.4E-13 108.3 34.7 330 67-443 80-454 (456)
236 4a0g_A Adenosylmethionine-8-am 99.2 2.1E-10 7.1E-15 126.4 19.3 341 69-444 399-828 (831)
237 3kts_A Glycerol uptake operon 38.4 20 0.0007 31.3 3.1 50 191-249 18-67 (192)
238 2pa8_L DNA-directed RNA polyme 37.7 1.3E+02 0.0044 22.6 7.8 78 364-446 3-82 (92)
239 1xpp_A TA1416, DNA-directed RN 36.7 1.5E+02 0.0053 23.3 8.5 87 357-450 7-95 (115)
240 3rpc_A Possible metal-dependen 36.4 2.1E+02 0.0072 25.7 10.2 76 156-231 162-247 (264)
241 3l6u_A ABC-type sugar transpor 31.7 1.9E+02 0.0065 25.9 9.1 77 157-245 13-97 (293)
242 3vc3_A Beta-cyanoalnine syntha 29.9 50 0.0017 31.7 4.7 75 120-207 90-164 (344)
243 1uta_A FTSN, MSGA, cell divisi 29.8 52 0.0018 23.9 3.8 48 386-439 21-68 (81)
244 1x60_A Sporulation-specific N- 27.1 68 0.0023 22.9 4.0 48 386-439 21-68 (79)
245 4fgs_A Probable dehydrogenase 24.0 3.1E+02 0.011 25.1 8.9 85 120-220 31-121 (273)
246 3uug_A Multiple sugar-binding 23.6 2.4E+02 0.0083 25.8 8.4 67 167-245 25-92 (330)
247 3m9w_A D-xylose-binding peripl 23.4 2.6E+02 0.0088 25.4 8.5 68 166-245 23-91 (313)
248 1tks_A 3,4-dihydroxy-2-butanon 22.1 1.5E+02 0.0051 26.0 5.8 35 202-242 159-193 (204)
249 4aec_A Cysteine synthase, mito 22.0 1.2E+02 0.0041 30.0 5.9 52 120-183 178-229 (430)
250 2o3a_A UPF0106 protein AF_0751 21.2 3.7E+02 0.013 22.6 10.0 84 102-213 25-109 (178)
251 2qv5_A AGR_C_5032P, uncharacte 20.9 4.7E+02 0.016 23.7 9.4 83 156-245 59-161 (261)
252 3gi1_A LBP, laminin-binding pr 20.5 4.9E+02 0.017 23.7 11.0 72 155-242 180-255 (286)
253 3dwg_A Cysteine synthase B; su 20.1 94 0.0032 29.3 4.6 53 120-184 76-128 (325)
No 1
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=3.5e-67 Score=552.73 Aligned_cols=497 Identities=76% Similarity=1.251 Sum_probs=401.2
Q ss_pred CccccccCCCcccccccCCchHHHhhCCCCCCCCCCCCHHHHHHHHHHhhhccCCCCCcccccccCCChHHHHHHHHHHh
Q 010897 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASI 80 (498)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 80 (498)
|+|++..++.+..+.+.|+++|+++.||++.+|+.+++++++++.+++.+++++||++|+++|++++++|.+.+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l~gnp~~~l~s~~t~~~~~~v~~~l~~~~ 80 (502)
T 3hbx_A 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSI 80 (502)
T ss_dssp -----------CCCSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGGSCCGGGBTTCCSCCCCCHHHHHHHHHTT
T ss_pred CCcccccCCCcccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhccCCCCCceeccccCCCCCHHHHHHHHHHh
Confidence 88988888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEc
Q 010897 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG 160 (498)
Q Consensus 81 ~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s 160 (498)
+.+..+|..+|...++|+++++|+++++|++.+.++...+++|+||++|+++++++++.+|...++..|.+..+++||++
T Consensus 81 ~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~ 160 (502)
T 3hbx_A 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTG 160 (502)
T ss_dssp TCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEE
T ss_pred ccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEc
Confidence 99998899999999999999999999999984333345688899999999999999999988877777876667799999
Q ss_pred CCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCce
Q 010897 161 ANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240 (498)
Q Consensus 161 ~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~ 240 (498)
+.+|+++.++++++|++++.||++++++.+|+++|+++|+++|++|++++|+|+||.++|+++|.++|+++++++++++|
T Consensus 161 ~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~ 240 (502)
T 3hbx_A 161 ANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240 (502)
T ss_dssp TTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCC
T ss_pred CCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCe
Confidence 99999999999999999999999876689999999999999999999999999999999999999999999777777999
Q ss_pred EEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCC
Q 010897 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK 320 (498)
Q Consensus 241 l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr 320 (498)
+|||+||++++.||..+..++++..+++|++++++|||+++|.|+|++++++++.+...+.....|+++....+++++++
T Consensus 241 l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr 320 (502)
T 3hbx_A 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSK 320 (502)
T ss_dssp EEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSC
T ss_pred EEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCc
Confidence 99999999998888888888888888999999999999999999999999988777777777889998877778888999
Q ss_pred chHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCc
Q 010897 321 GSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGW 400 (498)
Q Consensus 321 ~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~ 400 (498)
++..++++|++++.++.++|.+++++..+++++|.+.|+++|+|+++.+.+..++++|++++....+..++.++|.++||
T Consensus 321 ~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi 400 (502)
T 3hbx_A 321 GSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGW 400 (502)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCc
Confidence 88899999999999999999999999999999999999999999998762378999999976545778899999999999
Q ss_pred EeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccCC---Ccccccccc
Q 010897 401 IVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGD---KPLKKSVRE 477 (498)
Q Consensus 401 ~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 477 (498)
+++.+..|....+..++|++++..+|.+++++|+++|+++++.+++.+....++.... ..+...... ...+++..+
T Consensus 401 ~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 479 (502)
T 3hbx_A 401 IVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLG-QEKSESNSDNLMVTVKKSDID 479 (502)
T ss_dssp BCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTCC--------------------------------
T ss_pred EEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccc-cccccccccccccccccchhh
Confidence 9988877766667789999999999999999999999999999999887765441111 111011110 122466778
Q ss_pred cccchhhhhhhhcccc--cccCC
Q 010897 478 TQEEVTRHWKRFVKGR--RAGAC 498 (498)
Q Consensus 478 ~~~~~~~~~~~~~~~~--~~~~~ 498 (498)
+++++++||+++|++| ||+||
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~ 502 (502)
T 3hbx_A 480 KQRDIITGWKKFVADRKKTSGIC 502 (502)
T ss_dssp -----------------------
T ss_pred hhhhhhhHHHhhhhcccccccCC
Confidence 8899999999999765 89999
No 2
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=9.8e-55 Score=452.77 Aligned_cols=433 Identities=45% Similarity=0.844 Sum_probs=358.6
Q ss_pred ccCCchHHHhhCCCCCCCCCCCCHHHHHHHHHHhhhccCCCCCcccccccCCChHHHHHHHHHHhccCCCCCcCCcchHH
Q 010897 16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTE 95 (498)
Q Consensus 16 ~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~ 95 (498)
+.|++.+....++...+|++|++++++++.+.+.+..++++..|+.+|++++++|.+.+++.++++.+..+|..+|+..+
T Consensus 2 ~~~~~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~ 81 (452)
T 2dgk_A 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAA 81 (452)
T ss_dssp -------------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred CcccchHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCCChhhChhHHH
Confidence 46788888888888899999999999999999998778888888888988888889999999999998888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcC
Q 010897 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE 175 (498)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g 175 (498)
+++++++|+++++|++.++.....+++|+|||+|+++++++++..+....+..|.+.++++||+++ +|+++.++++++|
T Consensus 82 l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G 160 (452)
T 2dgk_A 82 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD 160 (452)
T ss_dssp HHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC
Confidence 999999999999999863200124899999999999999999877665555566443346999999 9999999999999
Q ss_pred CeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCccccccccc
Q 010897 176 VELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255 (498)
Q Consensus 176 ~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~ 255 (498)
++++.||++++++.+|+++|+++|+++|++|++++|+|+||.++|+++|.++|++++++++.++|+|||+||++++.||.
T Consensus 161 ~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~ 240 (452)
T 2dgk_A 161 VELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240 (452)
T ss_dssp CEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred ceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhh
Confidence 99999999864589999999999999999999999999999999999999999996444344999999999999877666
Q ss_pred CCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh
Q 010897 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL 335 (498)
Q Consensus 256 ~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l 335 (498)
.+..+++++.+++|++++++|||+++|.|+|+++++++..+...+...+.|+++....++++++|++..++++|++++.+
T Consensus 241 ~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l 320 (452)
T 2dgk_A 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL 320 (452)
T ss_dssp CTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH
T ss_pred CccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH
Confidence 66556677778899999999999999999999999886555455555677887654455677899887899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC---CCccEEEEEecCCC--CCCHHHHHHHHHhcCcEeeeecCCCC
Q 010897 336 GFEGYKNIMENCMGNARALREGLEKTGRFEILSKD---VGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPAN 410 (498)
Q Consensus 336 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---~~~~~v~f~~~~~~--~~~~~~l~~~L~~~G~~v~~~~~~~~ 410 (498)
|.+++++++++..++++++.+.|+++++++++.+. +..++++|++++.. .++..++.++|.++||.++.+..|..
T Consensus 321 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~ 400 (452)
T 2dgk_A 321 GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGE 400 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcc
Confidence 99999999999999999999999999889988652 36799999996421 25668999999999998877666655
Q ss_pred CCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHcCcc
Q 010897 411 AENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPS 449 (498)
Q Consensus 411 ~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~~~~ 449 (498)
..+..++|++++..+|.+++++|+++|+++++.+.+.+.
T Consensus 401 ~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~~~~ 439 (452)
T 2dgk_A 401 ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHPK 439 (452)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456779999999999999999999999999988776543
No 3
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=100.00 E-value=3.5e-49 Score=412.71 Aligned_cols=413 Identities=18% Similarity=0.193 Sum_probs=328.3
Q ss_pred ccccCCchHHHhhCCCCCCCCCCCCHHHHHHHHHHhhhc----cCCCCCcccccccCCCh--HHHHHHHHHHhccCCCCC
Q 010897 14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWME--PECDKLVMASINKNYVDM 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~--~~~~~~l~~~~~~n~~~~ 87 (498)
+.+...++++++.++. .+|+.|.+++++++++.+.+.. +.+|+| .+|++++.. ..+.+++..++|.|...|
T Consensus 29 v~~~~~p~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~ 105 (475)
T 3k40_A 29 VLPEVKPGYLKPLIPD-AAPEKPEKWQDVMQDIERVIMPGVTHWHSPKF--HAYFPTANSYPAIVADMLSGAIACIGFTW 105 (475)
T ss_dssp SSCSSCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTB--CCSSCCCCCHHHHHHHHHHHHHCCCSSSC
T ss_pred CCCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhccCCCCCCcCc--eeeCCCCCcHHHHHHHHHHHHhCccccCc
Confidence 4555678899999988 8999999999999999998763 467886 777766543 458899999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHcCCCCCC----CCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCcEE
Q 010897 88 DEYPVTTELQNRCVNMIAHLFNTPVAD----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNI 157 (498)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~----~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~------~~~~I 157 (498)
..+|..+++|+++++|+++++|+|.++ .....+++|+|||+||++|++++++++..+.+..|... .+++|
T Consensus 106 ~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 185 (475)
T 3k40_A 106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVG 185 (475)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEE
Confidence 999999999999999999999998531 01135899999999999999999887655433333211 13589
Q ss_pred EEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhC------CeEEEEeeccCCcccccCHHHHHHHHHHh
Q 010897 158 VTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKK 231 (498)
Q Consensus 158 v~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~------t~~v~~~~~~t~tG~~~~l~~I~~la~~~ 231 (498)
++++.+|+++.+++++.|++++.||++++ + ||+++|+++|+++ |++|++++++|++|.++|+++|+++|+++
T Consensus 186 i~s~~~H~s~~~~~~~~g~~~~~v~~d~~-~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~ 263 (475)
T 3k40_A 186 YCSDQAHSSVERAGLLGGVKLRSVQSENH-R-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKH 263 (475)
T ss_dssp EEETTSCHHHHHHHHHHTCEEEEECCBTT-B-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred EECCCchHHHHHHHHHcCCceEEEECCCC-C-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHh
Confidence 99999999999999999999999999875 7 9999999999865 67899999999999999999999999999
Q ss_pred hcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCC
Q 010897 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310 (498)
Q Consensus 232 ~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~ 310 (498)
|+|+|||+||+++.. ..+..+..+ +++.+|++++++|||+++|.|+|+++++++..+...+.....|+...
T Consensus 264 ------~~~lhvD~A~~~~~~--~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~ 335 (475)
T 3k40_A 264 ------NLWIHVDAAYAGSAF--ICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD 335 (475)
T ss_dssp ------TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------
T ss_pred ------CCeEEEeHHhHHHHH--hCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCC
Confidence 999999999998753 344443333 45568999999999999999999999998876655555666777543
Q ss_pred C-------CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCC
Q 010897 311 Q-------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDS 383 (498)
Q Consensus 311 ~-------~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~ 383 (498)
. ..++++++|. +.++++|++++.+|.+|+++++++..++++++.+.|+++++|+++.++ ..++|+|++++.
T Consensus 336 ~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-~~~iv~f~~~~~ 413 (475)
T 3k40_A 336 MQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-NMGLVCFRLKGS 413 (475)
T ss_dssp -------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-BTTEEEEEESSC
T ss_pred cCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEEEEEEeCCc
Confidence 1 2456677876 578999999999999999999999999999999999999889998765 689999999642
Q ss_pred CCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecC-CCCHHHHHHHHHHHHHHHHHHH
Q 010897 384 SAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVRE-DFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 384 ~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~-~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
.....++.++|.++|+++... ....+..++|++++. .+|.++++++++.|+++.+++.
T Consensus 414 -~~~~~~l~~~L~~~g~~~~~~---~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 414 -NERNEALLKRINGRGHIHLVP---AKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp -HHHHHHHHHHHHHHTSCBCEE---EEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhCCcEEEEe---eEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 223578999999999875433 223567899999875 4588999999999999887653
No 4
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-49 Score=413.39 Aligned_cols=414 Identities=17% Similarity=0.215 Sum_probs=338.6
Q ss_pred ccccCCchHHHhhCCCCCCCCCCCCHHHHHHHHHHhhhc----cCCCCCcccccccCCC--hHHHHHHHHHHhccCCCCC
Q 010897 14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWM--EPECDKLVMASINKNYVDM 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~--~~~~~~~l~~~~~~n~~~~ 87 (498)
+.+...+++++..++. .+|++|.+.+++++++.+.++. +.+|+| .+|++++. +..+.+++..++|.|...|
T Consensus 34 v~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 110 (481)
T 4e1o_A 34 VTPDVQPGYLRAQLPE-SAPEDPDSWDSIFGDIERIIMPGVVHWQSPHM--HAYYPALTSWPSLLGDMLADAINCLGFTW 110 (481)
T ss_dssp SSCCCCTTTTGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSST
T ss_pred CCCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe--eEeCCCCCCHHHHHHHHHHHHhCcccCCc
Confidence 4555678999999988 8999999999999999998763 467876 77776643 4568899999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHHcCCCCCC-----CCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCC------CCcE
Q 010897 88 DEYPVTTELQNRCVNMIAHLFNTPVAD-----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPN 156 (498)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~-----~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~------~~~~ 156 (498)
..+|+.+++|+++.+|+++++|+|... .....|++|+|||+||++|++++++++..+.+..|... .+++
T Consensus 111 ~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 190 (481)
T 4e1o_A 111 ASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLV 190 (481)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEE
T ss_pred CCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeE
Confidence 999999999999999999999998532 01135899999999999999999988765544333211 2468
Q ss_pred EEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhC------CeEEEEeeccCCcccccCHHHHHHHHHH
Q 010897 157 IVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTK 230 (498)
Q Consensus 157 Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~------t~~v~~~~~~t~tG~~~~l~~I~~la~~ 230 (498)
|++++.+|+++.+++++.|++++.||+++ +++||+++|+++|+++ |++|++++++|++|.++|+++|+++|++
T Consensus 191 v~~s~~~H~s~~~~~~~~g~~~~~v~~~~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~ 269 (481)
T 4e1o_A 191 AYASDQAHSSVEKAGLISLVKMKFLPVDD-NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAR 269 (481)
T ss_dssp EEEETTSCHHHHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred EEEcCcchHHHHHHHHhCCCceEEEEcCC-CCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH
Confidence 99999999999999999999999999976 4899999999999865 7889999999999999999999999999
Q ss_pred hhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCC
Q 010897 231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS 309 (498)
Q Consensus 231 ~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~ 309 (498)
| |+|+|||+||+++.. ..++.+... +++.+|++++++|||+++|.|+|+++++++..+...+.....|+..
T Consensus 270 ~------~~~lhvDaA~g~~~~--~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~ 341 (481)
T 4e1o_A 270 E------GLWLHIDAAYAGTAF--LCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH 341 (481)
T ss_dssp H------TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCC
T ss_pred c------CCeEEeehhhHHHHH--hChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccC
Confidence 9 999999999998753 444443333 4556799999999999999999999999876554555556667754
Q ss_pred CC-------CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecC
Q 010897 310 DQ-------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD 382 (498)
Q Consensus 310 ~~-------~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~ 382 (498)
.. ..++++++|. ..++++|++++.+|.+|+++++++..++++++.+.|+++++|+++.++ ..++++|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~ 419 (481)
T 4e1o_A 342 ANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR-HLGLVVFRLKG 419 (481)
T ss_dssp TTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-CSSEEEEEESS
T ss_pred cccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-ceeEEEEEeCC
Confidence 32 1345667776 578899999999999999999999999999999999999889998665 68999999964
Q ss_pred CCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCC-CCHHHHHHHHHHHHHHHHHHH
Q 010897 383 SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVRED-FSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 383 ~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~-~t~~~~~~l~~~l~~~l~~l~ 445 (498)
. .....++.++|.++|+++... ....+..++|+++... +|.++++++++.|+++++++-
T Consensus 420 ~-~~~~~~l~~~L~~~g~~~~~~---~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 420 P-NSLTENVLKEIAKAGRLFLIP---ATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp C-HHHHHHHHHHHHHHCSSBCEE---EEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHhCCeEEEEe---eEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 2 123568999999999765332 2235678999998754 588999999999999887653
No 5
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=100.00 E-value=5.8e-46 Score=391.70 Aligned_cols=410 Identities=18% Similarity=0.218 Sum_probs=329.8
Q ss_pred ccCCchHHHhh---CCCCCCCCCCCCHHHHHHHHHHhhhc---cCCCCCcccccccCCCh--HHHHHHHHHHhccCCCCC
Q 010897 16 STFASRYVRAA---IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWME--PECDKLVMASINKNYVDM 87 (498)
Q Consensus 16 ~~~~~~~~~~~---l~~~~~p~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~--~~~~~~l~~~~~~n~~~~ 87 (498)
+...|++++.. ++. .+|+.|.+.+++++.+++++.. .++|+| .+|++.+.. ..+.+++.++++.+...|
T Consensus 51 ~~~~p~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f--~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 127 (511)
T 3vp6_A 51 DFHHPHQLLEGMEGFNL-ELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMFTY 127 (511)
T ss_dssp CCCCHHHHHHCBTTBCC-CCCSSCCCHHHHHHHHHHHHHTSCCTTSTTE--ESSSSCCCCHHHHHHHHHHHHHCCCSSCT
T ss_pred CCCCHHHHHHHHhhCCC-CCCCCCCCHHHHHHHHHHHhhccCCCCCCCc--eEeecCCCcHHHHHHHHHHHHhccCCCCc
Confidence 34568888888 555 8899999999999999887763 367775 777777653 347899999999999899
Q ss_pred cCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCC-CCcEEEEcCCchhH
Q 010897 88 DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY-DKPNIVTGANVQVC 166 (498)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~-~~~~Iv~s~~~h~~ 166 (498)
..+|..+++|+++++|+++++|++.+. ..+++|+|||+|++.++.++++++.+..+..|.+. .+.+|++++.+|++
T Consensus 128 ~~~p~~~~le~~~~~~l~~~~g~~~~~---~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s 204 (511)
T 3vp6_A 128 EIAPVFVLMEQITLKKMREIVGWSSKD---GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 204 (511)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCSSS---CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTH
T ss_pred ccCchHHHHHHHHHHHHHHHhCCCCCC---CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHH
Confidence 999999999999999999999998532 35999999999999999999876543333445321 24589999999999
Q ss_pred HHHHHHHcCC---eeEEEEecCCccccCHHHHHHHhhhC------CeEEEEeeccCCcccccCHHHHHHHHHHhhcccCC
Q 010897 167 WEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW 237 (498)
Q Consensus 167 ~~~~~~~~g~---~~~~v~~~~~~~~~d~~~L~~~i~~~------t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~ 237 (498)
+.++++.+|+ +++.||++++ +.||+++|+++|+++ |++|++++|+|++|.++|+++|+++|+++
T Consensus 205 ~~~~~~~~g~g~~~~~~v~~d~~-~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~------ 277 (511)
T 3vp6_A 205 IKKAGAALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY------ 277 (511)
T ss_dssp HHHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH------
T ss_pred HHHHHHHcCCCCCcEEEeecCCC-CccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc------
Confidence 9999999999 8999999865 899999999999875 88999999999999999999999999999
Q ss_pred CceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCC-----
Q 010897 238 DTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ----- 311 (498)
Q Consensus 238 ~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~----- 311 (498)
|+|+|||+||+++++ ..++.+..+ +++++|++++++|||+++|.|+|+++++++..+...+.....|+....
T Consensus 278 ~~~lhvD~a~~~~~~--~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 355 (511)
T 3vp6_A 278 NLWLHVDAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDV 355 (511)
T ss_dssp TCEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCG
T ss_pred CCEEEEEccchhhHh--hChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccccccc
Confidence 999999999998864 455555554 456789999999999999999999999987655444445566765422
Q ss_pred ----CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeC-CCCccEEEEEecCCCCC
Q 010897 312 ----PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK-DVGVPLVAFSLKDSSAH 386 (498)
Q Consensus 312 ----~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~~ 386 (498)
..++++++|. ..++++|++++.+|.+|+++++++..++++++.+.|+++++|+++.+ ++..++++|++.+. +.
T Consensus 356 ~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~-~~ 433 (511)
T 3vp6_A 356 SYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ-SL 433 (511)
T ss_dssp GGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCG-GG
T ss_pred ccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCc-cc
Confidence 2345667776 47889999999999999999999999999999999999988999873 23688999988542 11
Q ss_pred C---------------HHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee-cCCCCHHHHHHHHHHHHHHHHHH
Q 010897 387 T---------------VFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 387 ~---------------~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
+ ..++.++|.++|+++..+.. ...+..++|+++ +..++.++++++++.|+++-+.+
T Consensus 434 ~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~--~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 434 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP--QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEE--ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE--eCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 23688999999987655322 123346899999 56778888888887777665443
No 6
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=7.3e-46 Score=389.38 Aligned_cols=415 Identities=19% Similarity=0.225 Sum_probs=321.3
Q ss_pred ccccCCchHHHhhCCCCCCCCCCCCHHHHHHHHHHhhhc----cCCCCCcccccccCCCh--HHHHHHHHHHhccCCCCC
Q 010897 14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWME--PECDKLVMASINKNYVDM 87 (498)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~--~~~~~~l~~~~~~n~~~~ 87 (498)
+.+...++++++.++. .+|+.|.+++++++.+.+.+.. +++|+| .+|+++++. ..+.+++..+++.+...|
T Consensus 29 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 105 (486)
T 1js3_A 29 VYPDVQPGYLRPLIPA-TAPQEPDTFEDILQDVEKIIMPGVTHWHSPYF--FAYFPTASSYPAMLADMLCGAIGCIGFSW 105 (486)
T ss_dssp SSCCCCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSSG
T ss_pred CCCCCCHHHHHHhccc-cCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc--eEeCCCCCCHHHHHHHHHHHHhCcCcccc
Confidence 3444567888899987 8899999999999999987653 357775 667776553 358899999999888888
Q ss_pred cCCcchHHHHHHHHHHHHHHcCCCCCCC----CCcceeeecChhHHHHHHHHHHHHHHHHHHHhc-CCC-----CCCcEE
Q 010897 88 DEYPVTTELQNRCVNMIAHLFNTPVADD----KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ-GKP-----YDKPNI 157 (498)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~~----~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~-g~~-----~~~~~I 157 (498)
..+|...++|+++++|+++++|++.+.. ....+++|+|||+||++++.++++.+..+.+.. |.- .++..|
T Consensus 106 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v 185 (486)
T 1js3_A 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185 (486)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEE
T ss_pred ccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEE
Confidence 8899999999999999999999985210 013489999999999999999877643322111 100 001248
Q ss_pred EEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCC------eEEEEeeccCCcccccCHHHHHHHHHHh
Q 010897 158 VTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231 (498)
Q Consensus 158 v~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t------~~v~~~~~~t~tG~~~~l~~I~~la~~~ 231 (498)
++++++|+++.++++.+|++++.||+++ ++.||+++|+++|++++ ++|++++|+|++|.++|+++|+++|+++
T Consensus 186 ~~s~~~h~s~~~~~~~~G~~v~~v~~d~-~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~ 264 (486)
T 1js3_A 186 YASDQAHSSVERAGLIGGVKLKAIPSDG-KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE 264 (486)
T ss_dssp EEETTCCHHHHHHHHHHTCEEEEECCCT-TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred EECCCCcHHHHHHHHhCCCceEEeecCC-CCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHc
Confidence 8999999999999999999999999975 58999999999998766 4899999999999999999999999999
Q ss_pred hcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCC
Q 010897 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310 (498)
Q Consensus 232 ~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~ 310 (498)
|+|+|||+||+++.. ..++.+..+ +++++|++++++|||+++|.|+|+++++++..+.+.+...+.|+...
T Consensus 265 ------~~~lhvD~a~g~~~~--~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~ 336 (486)
T 1js3_A 265 ------DIWLHVDAAYAGSAF--ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHS 336 (486)
T ss_dssp ------TCEEEEECTTGGGGG--GSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---------
T ss_pred ------CCEEEEehhhHHHHH--HCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCC
Confidence 999999999998763 344444332 45679999999999999999999999988654334443445566431
Q ss_pred C---------CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEec
Q 010897 311 Q---------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381 (498)
Q Consensus 311 ~---------~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (498)
. ..++++++|. ..++++|++++.+|.+++++++++..++++++.+.|+++++++++.++ ..++++|+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~rr-~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~ 414 (486)
T 1js3_A 337 HQGSGLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLK 414 (486)
T ss_dssp ---CCSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEES
T ss_pred cccccCCCCccccCCCCCCc-hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEec
Confidence 1 1234456665 367899999999999999999999999999999999999889998754 6889999986
Q ss_pred CCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecC-CCCHHHHHHHHHHHHHHHHHHHc
Q 010897 382 DSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVRE-DFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 382 ~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~-~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
+.+.. ..++.++|.++|+++.... ...+..++|+++.. .+|.++++++++.|+++++.+.+
T Consensus 415 ~~~~~-~~~l~~~L~~~g~~~~~~~---~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 415 GSDGL-NEALLERINSARKIHLVPC---RLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp SCHHH-HHHHHHHHHHHTSCBCEEE---EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHH-HHHHHHHHHhcCCEEEEEE---EECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 42111 3689999999997643321 12456889999754 57889999999999999877654
No 7
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=1.7e-44 Score=380.74 Aligned_cols=411 Identities=17% Similarity=0.199 Sum_probs=321.3
Q ss_pred ccccCCchHHHhh---CCCCCCCCCCCCHHHHHHHHHHhhhc---cCCCCCcccccccCCChHH--HHHHHHHHhccCCC
Q 010897 14 LSSTFASRYVRAA---IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWMEPE--CDKLVMASINKNYV 85 (498)
Q Consensus 14 ~~~~~~~~~~~~~---l~~~~~p~~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~--~~~~l~~~~~~n~~ 85 (498)
+.+...++++++. ++. .+|+.|.+++++++.+++.+.. .++|+| .+++++++.+. +.+++...++.|..
T Consensus 46 ~~~~~~p~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~ 122 (504)
T 2okj_A 46 VLDFHHPHQLLEGMEGFNL-ELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMF 122 (504)
T ss_dssp SCCCCCHHHHHSCBTTBCC-CCCSSCCCHHHHHHHHHHHHHTSCCTTCTTE--ESSSSCCCCHHHHHHHHHHHHHCCBSS
T ss_pred CCCCCCHHHHHHHhhccCC-CCCCCCCCHHHHHHHHHHHhhccCCCCCCCE--EEEccCCCCHHHHHHHHHHHhhccCCC
Confidence 4444567888888 765 8999999999999999887764 257775 67777776554 46888888899988
Q ss_pred CCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCC-CCcEEEEcCCch
Q 010897 86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY-DKPNIVTGANVQ 164 (498)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~-~~~~Iv~s~~~h 164 (498)
.|..+|..+++|+++++|+++++|++.+ ...+++|+|||+|+++++++++..+.+..+..|... .+.+|+++..+|
T Consensus 123 ~~~~~~~~~~le~~~~~~la~~~g~~~~---~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h 199 (504)
T 2okj_A 123 TYEIAPVFVLMEQITLKKMREIVGWSSK---DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 199 (504)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHTCCSS---SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC
T ss_pred chhhChHHHHHHHHHHHHHHHHhCCCCC---CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcch
Confidence 8888899999999999999999999831 135999999999999999998764322112223111 123899999999
Q ss_pred hHHHHHHHHcCC---eeEEEEecCCccccCHHHHHHHhhh------CCeEEEEeeccCCcccccCHHHHHHHHHHhhccc
Q 010897 165 VCWEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEET 235 (498)
Q Consensus 165 ~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~L~~~i~~------~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~ 235 (498)
+++.++++.+|+ +++.||++++ +.+|+++|+++|++ +|++|++++|+|++|.++|+++|+++|+++
T Consensus 200 ~s~~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~---- 274 (504)
T 2okj_A 200 YSIKKAGAALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY---- 274 (504)
T ss_dssp THHHHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHH----
T ss_pred HHHHHHHHHcCCCcccEEEEecCCC-CCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHc----
Confidence 999999999988 7999999764 89999999999986 589999999999999999999999999999
Q ss_pred CCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCC---
Q 010897 236 GWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ--- 311 (498)
Q Consensus 236 ~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~--- 311 (498)
|+|+|||+||+++.. ..++....+ +++++|++++++|||+++|.|+|++++++++.+...+.....|+.+..
T Consensus 275 --g~~lhvD~a~~~~~~--~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (504)
T 2okj_A 275 --NLWLHVDAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQY 350 (504)
T ss_dssp --TCEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSS
T ss_pred --CCEEEEehhhhhHHH--hCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccc
Confidence 999999999998864 344444444 345799999999999999999999999987544333334456664321
Q ss_pred ------CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeC-CCCccEEEEEecCCC
Q 010897 312 ------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK-DVGVPLVAFSLKDSS 384 (498)
Q Consensus 312 ------~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~ 384 (498)
..++++++|.. ..+++|++++.+|.+|+++++++..+++++|.+.|+++++|+++.+ ++..++++|++.+..
T Consensus 351 ~~~~~~~~~~~~~~rr~-~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~ 429 (504)
T 2okj_A 351 DVSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQS 429 (504)
T ss_dssp CGGGCCGGGSSCSSCBC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGG
T ss_pred cCcCCcccCCCCCCCCc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcc
Confidence 12334566653 5788999999999999999999999999999999999988999863 136788999874321
Q ss_pred --CC------------CHHHHHHHHHhcCcEeeeecCCCCCCC-eeEEEEeec-CCCCHHHHHHHHHHHHHHHHH
Q 010897 385 --AH------------TVFEISEGLRKFGWIVPAYTMPANAEN-VAVLRVVVR-EDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 385 --~~------------~~~~l~~~L~~~G~~v~~~~~~~~~~~-~~~lRv~v~-~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+. ...++.++|.++|+++..+.. ..+ ..++|++++ ..+|.++++++++.|++++++
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~---~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 430 LRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP---QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp GSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEE---ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeE---ECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 135788999999976543321 123 368999996 778999999999999887654
No 8
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=4e-43 Score=369.52 Aligned_cols=403 Identities=17% Similarity=0.257 Sum_probs=309.5
Q ss_pred CCchHHHhhCCCCCCCCCCCCHHHHHHHHHHhhhc----cCCCCCcccccccC-CChHHH-HHHHHHHhccCCCCCcCCc
Q 010897 18 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTT-WMEPEC-DKLVMASINKNYVDMDEYP 91 (498)
Q Consensus 18 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~-~~~~~~-~~~l~~~~~~n~~~~~~~~ 91 (498)
..++++++.++...+|+.+.+.+++++.+.+.+.. .++|+| .+++++ +.++.+ .+++...+|.+...|..+|
T Consensus 59 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--l~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~ 136 (497)
T 2qma_A 59 MDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDC--IAHLHTPPLMPAVAAEAMIAALNQSMDSWDQAS 136 (497)
T ss_dssp CCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTB--CSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCH
T ss_pred CCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe--eEeCCCCCcHHHHHHHHHHHhhcccccchhhCh
Confidence 35788889999877899999999999999876642 356765 444444 444554 5555667787777788889
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH-----HhcCCCC--CCcEEEEcCCch
Q 010897 92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR-----KEQGKPY--DKPNIVTGANVQ 164 (498)
Q Consensus 92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~-----~~~g~~~--~~~~Iv~s~~~h 164 (498)
...++|+++++|+++++|++.. ..+++|+|||+||++++++++..+..+. +..|.+. ++.+|+++...|
T Consensus 137 ~~~~le~~~~~~la~~~g~~~~----~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h 212 (497)
T 2qma_A 137 SATYVEQKVVNWLCDKYDLSEK----ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSH 212 (497)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTT----CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCC----CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCch
Confidence 9999999999999999999742 3499999999999999999866443211 1233321 234899999999
Q ss_pred hHHHHHHHHcCC---eeEEEEecCCccccCHHHHHHHhhhC------CeEEEEeeccCCcccccCHHHHHHHHHHhhccc
Q 010897 165 VCWEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEET 235 (498)
Q Consensus 165 ~~~~~~~~~~g~---~~~~v~~~~~~~~~d~~~L~~~i~~~------t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~ 235 (498)
+++.++++.+|+ +++.||++++ +.+|+++|+++|+++ +.+|+++.|+|+||.++|+++|.++|+++
T Consensus 213 ~s~~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~---- 287 (497)
T 2qma_A 213 FTVQKSASWMGLGEKAVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKH---- 287 (497)
T ss_dssp THHHHHHHHTTSCGGGEEEECBCTT-SSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH----
T ss_pred HHHHHHHHHcCCCcccEEEEecCCC-CcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHc----
Confidence 999999999987 7999999764 899999999999764 44889999999999999999999999999
Q ss_pred CCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCC---
Q 010897 236 GWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ--- 311 (498)
Q Consensus 236 ~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~--- 311 (498)
|+|+|||+||+++..+. + ....+ +++.+|++++++|||+++|.|+|+++++++..+ ..+.....|+....
T Consensus 288 --~~~l~vD~a~~~~~~~~--~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~-~~~~~~~~yl~~~~~~~ 361 (497)
T 2qma_A 288 --DMWMHVDGAYGGALILS--S-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDEL 361 (497)
T ss_dssp --TCEEEEEETTGGGGGGS--T-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGG-GGGCC------------
T ss_pred --CCEEEEehhhhHHHHhC--c-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHH-HHhcCCchhcCCccccC
Confidence 99999999999886432 2 22222 345789999999999999999999999987544 33333455654321
Q ss_pred ---CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCC-
Q 010897 312 ---PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHT- 387 (498)
Q Consensus 312 ---~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~- 387 (498)
..++++++|. +.++++|++++.+|.+++++++++..+++++|.+.|+++++|+++.++ ..++++|++.+.. .+
T Consensus 362 ~~~~~~~~~~~r~-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~-~~~ 438 (497)
T 2qma_A 362 PNLVDKSIATTKR-FDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-SLSTVLFRATHET-ADL 438 (497)
T ss_dssp --------CCSCC-CTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-SSSEEEEEECCSS-SCH
T ss_pred CCccccCCCCCCc-hhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-CceEEEEEEcCCc-cCH
Confidence 1234556665 467899999999999999999999999999999999999889997655 6789999986431 12
Q ss_pred ---HHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q 010897 388 ---VFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 388 ---~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
..++.+.|.++|+.+..... ..+..++|+++ +..+|.++++++++.|++++++
T Consensus 439 ~~l~~~l~~~l~~~G~~~~~~~~---~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 439 DELNKALRLEALTRGIAVLGETI---VDGKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp HHHHHHHHHHHHHHTSCBCEEEE---ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeeE---ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 24677889999988754322 24567899998 6788999999999999988765
No 9
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=6.8e-43 Score=369.23 Aligned_cols=408 Identities=16% Similarity=0.191 Sum_probs=312.1
Q ss_pred ccccCCchHHHhhCCCCCCCCCCCCHHHHHHHHHHhhhcc---CCCCCcccccccCCChHH--HHHHHHHHhccCCCCCc
Q 010897 14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLD---GNPRLNLASFVTTWMEPE--CDKLVMASINKNYVDMD 88 (498)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~--~~~~l~~~~~~n~~~~~ 88 (498)
+.+...|++++..++. .+|+.|++++++++.+++++... ++|+| .+++++++.+. +.+++...+|.+...|.
T Consensus 65 v~~~~~p~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~ 141 (515)
T 2jis_A 65 VCEWKEPEELKQLLDL-ELRSQGESQKQILERCRAVIRYSVKTGHPRF--FNQLFSGLDPHALAGRIITESLNTSQYTYE 141 (515)
T ss_dssp SCCCCCHHHHHHHHCC-CCCSSCCCHHHHHHHHHHHHHHSCCTTSTTE--ESSSCCCCCHHHHHHHHHHHHHCCCTTCTT
T ss_pred CCCCCCHHHHHhhccc-CCCCCCCCHHHHHHHHHHHhcCCCCCCCCCe--EEEeeCCCCHHHHHHHHHHHHhccCCCchh
Confidence 4444567888888875 89999999999999998877642 56765 66667666543 45778877888887888
Q ss_pred CCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEcCCchhHH
Q 010897 89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCW 167 (498)
Q Consensus 89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~-~~~~~Iv~s~~~h~~~ 167 (498)
.+|+..++|+++++|+++++|++. ..+++|+|+|+||++++.+++..+.+..+..|.. ..+.+|++++.+|+++
T Consensus 142 ~s~~~~~le~~~~~~la~l~g~~~-----~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~ 216 (515)
T 2jis_A 142 IAPVFVLMEEEVLRKLRALVGWSS-----GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI 216 (515)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCSS-----CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred hchHHHHHHHHHHHHHHHHhCCCC-----CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH
Confidence 899999999999999999999984 3499999999999999999876432111112210 1134899999999999
Q ss_pred HHHHHHcCC---eeEEEEecCCccccCHHHHHHHhhh------CCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCC
Q 010897 168 EKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238 (498)
Q Consensus 168 ~~~~~~~g~---~~~~v~~~~~~~~~d~~~L~~~i~~------~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~ 238 (498)
.++++.+|+ +++.||++++ +.+|+++|+++|++ +|++|++++|+|++|.++|+++|+++|+++ |
T Consensus 217 ~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~------g 289 (515)
T 2jis_A 217 QKGAAFLGLGTDSVRVVKADER-GKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRH------G 289 (515)
T ss_dssp HHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH------T
T ss_pred HHHHHHcCCCCCcEEEEecCCC-CcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc------C
Confidence 999999998 8999999764 89999999999986 489999999999999999999999999999 9
Q ss_pred ceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCC-CCCCcccccccCccCCCC-----
Q 010897 239 TPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTK-DDLPDELVFHINYLGSDQ----- 311 (498)
Q Consensus 239 ~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~-~~l~~~~~~~~~yl~~~~----- 311 (498)
+|+|||+||+++.. ..+...+.+ +++++|++++++|||+++|.|+|+++++++ +.+...+.....|+.+..
T Consensus 290 ~~l~vD~a~~~~~~--~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 290 LWLHVDAAWGGSVL--LSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp CEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred CeEEEehhhhhHHH--hChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999875 334443334 345789999999999999999999999986 443333333456663211
Q ss_pred ----CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCC--CC
Q 010897 312 ----PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDS--SA 385 (498)
Q Consensus 312 ----~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~--~~ 385 (498)
..++++++|. ...+++|++++.+|.+|+++++++..++++++.+.|+++++++++.++ ..++++|++.+. .+
T Consensus 368 ~~~~~~~~~~~~rr-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~p~~~~~ 445 (515)
T 2jis_A 368 ALDTGDKVVQCGRR-VDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP-EFVNVCFWFVPPSLRG 445 (515)
T ss_dssp GGCCGGGCSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC-SSSEEEEEECCGGGTT
T ss_pred cCCCCCCCCCCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-CeeEEEEEEeCccccc
Confidence 1233455554 356899999999999999999999999999999999999889998765 567899987432 01
Q ss_pred ----CCH--------HHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee-cCCCCHHHHHHHHHHHHHHHH
Q 010897 386 ----HTV--------FEISEGLRKFGWIVPAYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 386 ----~~~--------~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.+. ..+.+.|.++|+++..+.. ......++|+++ +..+|.++++++++.|+++++
T Consensus 446 ~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~--~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 446 KQESPDYHERLSKVAPVLKERMVKEGSMMIGYQP--HGTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp CTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEE--ETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE--ECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 110 1367888899976543321 112346899999 788899999999999987764
No 10
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-41 Score=355.00 Aligned_cols=392 Identities=23% Similarity=0.404 Sum_probs=315.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhc-c----CCCCCcccccccCCChHHHHHHHHHHhcc----CCCCCcCCcchHHHHHHH
Q 010897 30 FKMPDNSMPKEAAYQVINDELML-D----GNPRLNLASFVTTWMEPECDKLVMASINK----NYVDMDEYPVTTELQNRC 100 (498)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~~~~~-~----~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----n~~~~~~~~~~~~le~~~ 100 (498)
..+|+.|.+.+++++.+++.... + .++++ .+++... ++.+.+++.++++. |...|..+|+..++++++
T Consensus 36 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (497)
T 3mc6_A 36 PQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKV--SGAVYHG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEV 112 (497)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCB--SSSCSCC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCE--eeecCCC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHH
Confidence 47899999999999999987764 2 12332 3332222 35566666666554 777888999999999999
Q ss_pred HHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEE
Q 010897 101 VNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180 (498)
Q Consensus 101 ~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~ 180 (498)
++|+++++|++.+. ..+++|+|+++|++++++++++.... ..|. .+++|+++.++|.++.++++.+|++++.
T Consensus 113 ~~~la~~~g~~~~~---~~~~~~~ggt~a~~~a~~a~~~~~~~---~~g~--~~~~Vi~~~~~h~~~~~~~~~~G~~~~~ 184 (497)
T 3mc6_A 113 VSMVLRMFNAPSDT---GCGTTTSGGTESLLLACLSAKMYALH---HRGI--TEPEIIAPVTAHAGFDKAAYYFGMKLRH 184 (497)
T ss_dssp HHHHHHHTTCCTTT---CCEEEESSHHHHHHHHHHHHHHHHHH---HSCC--SSCEEEEETTSCHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHhCCCCCC---CeEEEcCcHHHHHHHHHHHHHHHHHh---cCCC--CCceEEEeCCccHHHHHHHHHcCCeEEE
Confidence 99999999998321 34999999999999999998764321 1232 2469999999999999999999999999
Q ss_pred EEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCC---
Q 010897 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP--- 257 (498)
Q Consensus 181 v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~--- 257 (498)
||++++++.+|+++|+++|+++|++|++++|+|++|.++|+++|.++|+++ |+|+|||+||+++..+|...
T Consensus 185 v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~livD~a~~~~~~~f~~~~~~ 258 (497)
T 3mc6_A 185 VELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKY------KLPLHVDSCLGSFIVSFMEKAGY 258 (497)
T ss_dssp ECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHT------TCCEEEETTTTHHHHGGGTTTTC
T ss_pred EecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHh------CCEEEEECcchhhhhhhhhhhcc
Confidence 999874589999999999999999999999999999999999999999999 99999999999887664421
Q ss_pred -CC-ccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh
Q 010897 258 -DL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL 335 (498)
Q Consensus 258 -~~-~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l 335 (498)
.. ..++...++|++++++|||+++|.|+|+++++++............|.++.....++.+++....++++|+++..+
T Consensus 259 ~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l 338 (497)
T 3mc6_A 259 KNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNM 338 (497)
T ss_dssp CSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHH
T ss_pred cCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHH
Confidence 11 3445567899999999999999999999998875432222334455666554556677889888889999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCe
Q 010897 336 GFEGYKNIMENCMGNARALREGLEK-TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENV 414 (498)
Q Consensus 336 g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~ 414 (498)
+.+++++++++..++++++.+.|++ +++++++.++ ..++++|+.. +.+..++.+.|.++||.++.+..|
T Consensus 339 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-~~~~v~~~~~---~~~~~~l~~~L~~~Gi~v~~~~~~------ 408 (497)
T 3mc6_A 339 GENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-RYSVISFSSK---TLNIHELSDRLSKKGWHFNALQKP------ 408 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-CSSEEEEECT---TTTHHHHHHHHHTTTCBCEECCSS------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-CeeEEEEeCC---CCCHHHHHHHHHhCCEEEecCCCC------
Confidence 9999999999999999999999999 6889988665 6889999864 367889999999999987654333
Q ss_pred eEEEEeecCCCCHHHHHHHHHHHHHHHHHHHcCcc
Q 010897 415 AVLRVVVREDFSRSLVERLISHIEEVLKEIESLPS 449 (498)
Q Consensus 415 ~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~~~~ 449 (498)
..+|+++. ..|.+++++++++|+++++.+.+.+.
T Consensus 409 ~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~~~ 442 (497)
T 3mc6_A 409 VALHMAFT-RLSAHVVDEICDILRTTVQELKSESN 442 (497)
T ss_dssp CCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC--
T ss_pred CeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 24799987 67999999999999999998876644
No 11
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=1.7e-38 Score=335.63 Aligned_cols=395 Identities=21% Similarity=0.329 Sum_probs=311.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhc----cCCCCCcccccccCCC---hHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHH
Q 010897 30 FKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWM---EPECDKLVMASINKNYVDMDEYPVTTELQNRCVN 102 (498)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~---~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~ 102 (498)
..+|+.+++.+++++.+++.+.. +.++++ .+++.... .+.+.+++...++.|...+..+|...++|+++++
T Consensus 69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~ 146 (514)
T 3mad_A 69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYA--SGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVA 146 (514)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCB--SSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCce--EEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHH
Confidence 36789999999999999877532 234443 33332222 2346666777777888888889999999999999
Q ss_pred HHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEE
Q 010897 103 MIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK 182 (498)
Q Consensus 103 ~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~ 182 (498)
|+++++|++.+. +...+++|+|+++|+.+++++++...... .| ..+++|+++.++|.++.++++.+|++++.||
T Consensus 147 ~la~~~g~~~~~-~~v~~~~t~ggt~a~~~al~a~~~~g~~~---~g--~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~ 220 (514)
T 3mad_A 147 MTAHMLGGDAAG-GTVCGTVTSGGTESLLLAMKTYRDWARAT---KG--ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTP 220 (514)
T ss_dssp HHHHHTTGGGGT-SCCEEEEESSHHHHHHHHHHHHHHHHHHH---HC--CSSCEEEEETTSCTHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCCCcc-CCcceEEcCcHHHHHHHHHHHHHHHhhhh---cC--CCCCeEEEeCccchHHHHHHHHcCCeeEEee
Confidence 999999998421 12345999999999999999987653221 22 2347999999999999999999999999999
Q ss_pred ecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccC----CC
Q 010897 183 LEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY----PD 258 (498)
Q Consensus 183 ~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~----~~ 258 (498)
+++ ++.+|+++|+++|+++|++|++++++|++|.++|+++|.++|+++ |+|+|+|+||++++.++.. +.
T Consensus 221 ~~~-~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------~i~livDea~~~~~~~~~~~~g~~~ 293 (514)
T 3mad_A 221 LDA-DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEH------GIGCHVDACLGGFILPWAERLGYPV 293 (514)
T ss_dssp BCT-TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTTTTHHHHHHTTCCC
T ss_pred eCC-CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHh------CCeEEEecccccccchhHHhcCCCC
Confidence 987 489999999999999999999999999999999999999999999 9999999999998754211 11
Q ss_pred CccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHH
Q 010897 259 LEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338 (498)
Q Consensus 259 ~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~ 338 (498)
..+++...++|++++++||+++++.|+|+++++++............|.++....+++.+++....++++|+++..++.+
T Consensus 294 ~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~ 373 (514)
T 3mad_A 294 PPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373 (514)
T ss_dssp CCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence 23445566799999999999999999999999875433222223344554443344566888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEE
Q 010897 339 GYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLR 418 (498)
Q Consensus 339 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lR 418 (498)
++++++++..++++++.+.|+++++++++.++ .+++.|... +.+..++.++|.++||.+.++.. ...+|
T Consensus 374 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~---~~~~~~l~~~L~~~Gi~v~g~~~------~~~~R 442 (514)
T 3mad_A 374 GYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVASD---ELNIYQVMEEMAGRGWRLNGLHR------PPAFH 442 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEECS---SSCHHHHHHHHHTTTCBCEEETT------TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeCC---CCCHHHHHHHHHhcCCEeccCCC------CCeEE
Confidence 99999999999999999999999889988654 457777653 36788999999999998755432 23599
Q ss_pred EeecC-CCCHHHHHHHHHHHHHHHHHHHcCccc
Q 010897 419 VVVRE-DFSRSLVERLISHIEEVLKEIESLPSR 450 (498)
Q Consensus 419 v~v~~-~~t~~~~~~l~~~l~~~l~~l~~~~~~ 450 (498)
+++.. .+++++++++++.|+++++++++.+..
T Consensus 443 i~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~~~ 475 (514)
T 3mad_A 443 VALTLRHTEPGVVDRFLADLQDAVAQVRAHPEK 475 (514)
T ss_dssp EECCGGGGSTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99874 446699999999999999988765543
No 12
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.1e-38 Score=317.74 Aligned_cols=384 Identities=23% Similarity=0.332 Sum_probs=306.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhccCCCC-CcccccccCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcC
Q 010897 31 KMPDNSMPKEAAYQVINDELMLDGNPR-LNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN 109 (498)
Q Consensus 31 ~~p~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g 109 (498)
.+|+.+.+.+++++.+.+....+.+.. -++.++.+.+++|.+.+++.+.+..+...+..+++..+++.++++++++++|
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 83 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN 83 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhC
Confidence 578899999999999988765432211 1235555666778899999999888766666777889999999999999999
Q ss_pred CCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccc
Q 010897 110 TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYV 189 (498)
Q Consensus 110 ~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~ 189 (498)
.+. ..+++|+|+++|+.+++.+++..+...+........+++|+++.++|.++..+++..|++++.+|++++ +.
T Consensus 84 ~~~-----~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~ 157 (397)
T 3f9t_A 84 NKD-----AYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-YT 157 (397)
T ss_dssp CTT-----CEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT-SS
T ss_pred CCC-----CCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC-Cc
Confidence 875 248999999999999999998776544332222223679999999999999999999999999999875 88
Q ss_pred cCHHHHHHHhhh-CCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCC-------CCcc
Q 010897 190 MNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-------DLEW 261 (498)
Q Consensus 190 ~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~-------~~~~ 261 (498)
+|+++|++++++ ++++|+++.++|+||.+.|+++|.++|+++ |+++|+|++|+++..++... ...+
T Consensus 158 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~ 231 (397)
T 3f9t_A 158 IDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKEN------NIYIHVDAAFGGLVIPFLDDKYKKKGVNYKF 231 (397)
T ss_dssp BCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHH------TCEEEEECTTGGGTGGGCCGGGCCTTCCCCC
T ss_pred CCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHh------CCeEEEEccccchhhhhcccccccccccccc
Confidence 999999999999 899999999999999999999999999999 99999999999886654332 1133
Q ss_pred ccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHH
Q 010897 262 DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYK 341 (498)
Q Consensus 262 ~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~ 341 (498)
++.. ++|++++++||++++|.++|+++++++... ..+.....|+.... ...+.+++.+...+++++++..++..++.
T Consensus 232 ~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 308 (397)
T 3f9t_A 232 DFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETR-QATILGTRVGFGGACTYAVLRYLGREGQR 308 (397)
T ss_dssp SGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSE-ECSSCSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCC-ccccccccccchHHHHHHHHHHHhHHHHH
Confidence 4444 789999999999999999999998876432 32222234443321 22334677777889999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee
Q 010897 342 NIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421 (498)
Q Consensus 342 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v 421 (498)
++.++..++++++.+.|+++ +++++.++ ..++++|.+++ ..++.+.|.++|+.+.... ...++|+++
T Consensus 309 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~~~------~~~~~Ri~~ 375 (397)
T 3f9t_A 309 KIVNECMENTLYLYKKLKEN-NFKPVIEP-ILNIVAIEDED-----YKEVCKKLRDRGIYVSVCN------CVKALRIVV 375 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBSSCC-SSSEEEEECTT-----HHHHHHHHHHTTCBCEECS------SSSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCEEEcCC-CccEEEEEeCC-----HHHHHHHHHhCCeEEeccC------CCCEEEEEE
Confidence 99999999999999999998 58766554 67888888742 5789999999998775432 136799999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 010897 422 REDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 422 ~~~~t~~~~~~l~~~l~~~l~ 442 (498)
+..++.++++++++.|+++++
T Consensus 376 ~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 376 MPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CTTCCHHHHHHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHHhhC
Confidence 988899999999999988764
No 13
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=4.5e-36 Score=312.26 Aligned_cols=375 Identities=15% Similarity=0.131 Sum_probs=271.7
Q ss_pred HHHhhCCCCCCCCCCCCHHHHHHHHHHhhhccCCCCCcccccccCCChHHHHHHHHHH-----hccCC-----C----CC
Q 010897 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMAS-----INKNY-----V----DM 87 (498)
Q Consensus 22 ~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~-----~~~n~-----~----~~ 87 (498)
++++.++..++|+.|++.+++.+.+++...++.+..++.++ +++.++.+.+.+... ++.+. . .+
T Consensus 48 ~~~~~~~~~~lp~~g~~~~~i~~~~~~~~~~~~~~yld~aa--~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (456)
T 2z67_A 48 EIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVR--IGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKA 125 (456)
T ss_dssp HHHHHHHHCSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEE--CSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTB
T ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHHHhccccccccccc--cccccccccccccCccccccCCCccHHHHHHhhCccc
Confidence 44456667789999999999999888876666554555444 333344444444331 11111 0 12
Q ss_pred cCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhH
Q 010897 88 DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC 166 (498)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~s-ea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~ 166 (498)
..+|...++++++++++++++|++. . +++|+|+| .++++++.+++.. . ++++|++++++|.+
T Consensus 126 ~~~~~~~~~~~~~~~~la~~~g~~~-----~-~~~t~g~te~a~~~al~~~~~~-~----------~~~~vi~~~~~h~s 188 (456)
T 2z67_A 126 SGASIMYALTNKILESFFKQLGLNV-----H-AIATPISTGMSISLCLSAARKK-Y----------GSNVVIYPYASHKS 188 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC-----E-EEEESSCHHHHHHHHHHHHHHH-H----------CCCEEEEECCCCHH
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCCC-----C-EEEeCcHHHHHHHHHHHHHHHh-c----------CCCEEEEECCCcHH
Confidence 2334578899999999999999975 2 89999999 5666677765431 1 13578889999999
Q ss_pred HHHHHHHcCCeeEEEEec--CCccccCHHHHHHHh-h----hCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCc
Q 010897 167 WEKFARYFEVELKEVKLE--EGYYVMNPVKAVELV-D----ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239 (498)
Q Consensus 167 ~~~~~~~~g~~~~~v~~~--~~~~~~d~~~L~~~i-~----~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~ 239 (498)
+.++++..|++++.|++. ++++.+|+++|+++| + .++++|+++.+||+||.++|+++|.++|+++ |+
T Consensus 189 ~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~------g~ 262 (456)
T 2z67_A 189 PIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY------DI 262 (456)
T ss_dssp HHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH------TC
T ss_pred HHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc------CC
Confidence 999999999999998873 345899999999999 5 3678888999999999999999999999999 99
Q ss_pred eEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCC
Q 010897 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFS 319 (498)
Q Consensus 240 ~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~s 319 (498)
|+|||+||+++..++. +.....+.. ++|++++++|||+++|.|+|++++++++.+. . ..+.|.+ .
T Consensus 263 ~v~vD~A~~~~~~g~~-~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~-~--l~~~~~g----------~ 327 (456)
T 2z67_A 263 PHIINGAYAIQNNYYL-EKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK-E--ISLSYPG----------R 327 (456)
T ss_dssp CEEEECTTTTTCHHHH-HHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHH-H--HHTTSCS----------C
T ss_pred cEEEECcchHHHHHhh-HHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHh-h--cCcCCCC----------C
Confidence 9999999987764321 111111111 6899999999999999999999997653321 1 1334443 2
Q ss_pred CchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHH
Q 010897 320 KGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLR 396 (498)
Q Consensus 320 r~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~ 396 (498)
+....++++|+++..++.++++++.++..+++++|.+.|++++ ++.++.+ . ++++|++..+ .. ..++.++|.
T Consensus 328 ~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~--~-~~v~~~~~~~-~~-~~~l~~~L~ 402 (456)
T 2z67_A 328 ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV--E-SPIASCISVN-SD-PVEIAAKLY 402 (456)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC--C-CSSEEEEECS-SC-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCC--C-CeEEEEEecc-cH-HHHHHHHHH
Confidence 2234588899999999999999999999999999999999984 5666543 3 8888887321 11 468999999
Q ss_pred hcCcEeeeec--------CCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 397 KFGWIVPAYT--------MPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 397 ~~G~~v~~~~--------~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
++|+...... .........++|+++...+|.+++++++++|++++
T Consensus 403 ~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 403 NLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred HcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 9986211111 00001123679999988889999999999987654
No 14
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=2.2e-30 Score=261.79 Aligned_cols=342 Identities=14% Similarity=0.075 Sum_probs=253.6
Q ss_pred CCChHHHHHHHHHHhccCCCCCcC-C---cchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKNYVDMDE-Y---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n~~~~~~-~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~ 141 (498)
.++++.+.+++.+.+.....++.. + .....+.+++++++++++|.+. ..+++|+|+++|+.+++.++...+
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~i~~~~g~~~a~~~~~~~~~~~~ 84 (382)
T 4hvk_A 10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMRN 84 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTT-----EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEECCchHHHHHHHHHhhhhh
Confidence 356678888888877653332221 2 2456777889999999999864 248999999999999998876321
Q ss_pred HHHHHhcCCCCCCcEEEEcCCchhHHHHHHHH---cCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccc
Q 010897 142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF 218 (498)
Q Consensus 142 ~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~---~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~ 218 (498)
. . .+++|+++++.|.++...+.. .|++++.++++++ +.+|+++|+++++++|++|++++++|+||.+
T Consensus 85 ~----~-----~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 154 (382)
T 4hvk_A 85 A----R-----KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGTI 154 (382)
T ss_dssp G----G-----GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCBB
T ss_pred c----C-----CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCC-CCcCHHHHHHHhccCceEEEEECCCCCceee
Confidence 0 0 146899999999998877665 5999999999865 7899999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCc
Q 010897 219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD 298 (498)
Q Consensus 219 ~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~ 298 (498)
.|+++|.++|+++ |+ +|+|++|+.+..++ ++...++|+++.++||+ +++.|+|+++++++..+
T Consensus 155 ~~~~~i~~l~~~~------~~-li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~-- 217 (382)
T 4hvk_A 155 QPVEEISEVLAGK------AA-LHIDATASVGQIEV-------DVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKL-- 217 (382)
T ss_dssp CCHHHHHHHHSSS------SE-EEEECTTTBTTBCC-------CHHHHTCSEEEEESGGG-TSCTTCEEEEEETTCCC--
T ss_pred CCHHHHHHHHHHc------CE-EEEEhHHhcCCCCC-------CchhcCCCEEEEeHHHh-cCCCceEEEEEcCccCc--
Confidence 9999999999999 99 99999997654322 11112478999999997 56789999998875422
Q ss_pred ccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC-C-ccEE
Q 010897 299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-G-VPLV 376 (498)
Q Consensus 299 ~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-~-~~~v 376 (498)
...+.+.........++.+...+.++.+++..+ .++++++.++..++++++.+.|++++++++..++. . .+++
T Consensus 218 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 292 (382)
T 4hvk_A 218 ----QPVILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNV 292 (382)
T ss_dssp ----CCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEE
T ss_pred ----CcccccCCCcCccccCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEE
Confidence 111122111111112344445555555666533 46788999999999999999999998898876532 2 3588
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCC----------C------CeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANA----------E------NVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~----------~------~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
.|.+++ .+..++.+.|.++|+.+......... . ...++|++++...+.++++++++.|+++
T Consensus 293 ~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 293 NVRFSY---IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp EEEETT---CCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEECC---CCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 888853 57789999999999987543211100 0 0468999999888999999999999999
Q ss_pred HHHHHcC
Q 010897 441 LKEIESL 447 (498)
Q Consensus 441 l~~l~~~ 447 (498)
++++.+.
T Consensus 370 ~~~~~~~ 376 (382)
T 4hvk_A 370 IERLRSM 376 (382)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9887654
No 15
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=100.00 E-value=1.7e-31 Score=271.53 Aligned_cols=381 Identities=14% Similarity=0.104 Sum_probs=264.3
Q ss_pred HhhCCCCCCCCCCCCHHHHHHHHHHhhhccCCC------------CC-------cccccccCCChHHHHHHHHHHhccCC
Q 010897 24 RAAIPRFKMPDNSMPKEAAYQVINDELMLDGNP------------RL-------NLASFVTTWMEPECDKLVMASINKNY 84 (498)
Q Consensus 24 ~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~p------------~~-------~~~~~~~~~~~~~~~~~l~~~~~~n~ 84 (498)
+..+....+|++|.+.+++...+++.-.+|.|. ++ .+++|++.. ....+++.. |+
T Consensus 15 ~~~~~~~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~--~~~~d~l~~----~~ 88 (450)
T 3bc8_A 15 RLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI--GRSGDISAV----QP 88 (450)
T ss_dssp HHHHHHCCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB--CC-----------CC
T ss_pred HHHHHhccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch--hHHHHHHHh----Cc
Confidence 344455689999999999999998876554321 11 134455443 112344433 54
Q ss_pred CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCc
Q 010897 85 VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV 163 (498)
Q Consensus 85 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~s-ea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~ 163 (498)
.+..+|....+++.+..|+.+++|+|.. ..+++++|+| .++.+++.+++... .+++.|+++..+
T Consensus 89 -~~~~~~~~~~~e~~~~~~~~~~lGlp~~----~~~~lV~GaT~~~~a~~L~aar~~~----------~~~~~viv~r~a 153 (450)
T 3bc8_A 89 -KAAGSSLLNKITNSLVLNVIKLAGVHSV----ASCFVVPMATGMSLTLCFLTLRHKR----------PKAKYIIWPRID 153 (450)
T ss_dssp -SBHHHHHHHHHHHHHHHHHHHHHTCTTC----CEEEEESSCHHHHHHHHHHHHHHHC----------TTCCEEEEECCC
T ss_pred -cccCCcHHHHHHHHHHHHHHHhCCCCCC----ceEEEECCHHHHHHHHHHHHcchhh----------cCCCEEEEECCc
Confidence 5566778889999999999999999863 3468999998 55655666665421 013689999999
Q ss_pred hhHHHHHHHHcCCeeEEEEec--CCccccCHHHHHHHhhh----CCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCC
Q 010897 164 QVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW 237 (498)
Q Consensus 164 h~~~~~~~~~~g~~~~~v~~~--~~~~~~d~~~L~~~i~~----~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~ 237 (498)
|.|+.+++.++|++++.|+.. ++.+.||+++|+++|++ ++.+|+.+.+++.+|.++|+++|+++|++|
T Consensus 154 HkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~------ 227 (450)
T 3bc8_A 154 QKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY------ 227 (450)
T ss_dssp CHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHC------
Confidence 999999999999998888762 44689999999999976 334455554444467999999999999999
Q ss_pred CceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCcccc
Q 010897 238 DTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317 (498)
Q Consensus 238 ~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~ 317 (498)
|+|+|||+|||+... +..+.++.-+..+++|+++.|+|||+++|.+++++++++++.+... ...|.+.
T Consensus 228 gi~l~VD~A~G~~~~-~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~---~~~~~g~-------- 295 (450)
T 3bc8_A 228 DIPHVVNNAYGLQSS-KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI---SKMYPGR-------- 295 (450)
T ss_dssp TCCEEEECTTTTTCH-HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH---HHHSCSC--------
T ss_pred CCeEEEECCCchhhh-hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHH---HHHhhcC--------
Confidence 999999999998643 2211111111225799999999999999999999999876543211 2234321
Q ss_pred CCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeeCCCCcc-EEEEEecC---CCCCCHHH
Q 010897 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG---RFEILSKDVGVP-LVAFSLKD---SSAHTVFE 390 (498)
Q Consensus 318 ~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~-~v~f~~~~---~~~~~~~~ 390 (498)
......+.+|..+..+|.++|++.+++..++++++++.|++++ ++.++..+. .+ -.++.+.. ....|..+
T Consensus 296 --~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~-~~~~~~~~l~~~~~~~~~D~tk 372 (450)
T 3bc8_A 296 --ASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPH-NPISLAMTLKTIDGHHDKAVTQ 372 (450)
T ss_dssp --BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTT-CSSEEEEECTTTSSSSSCHHHH
T ss_pred --CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCcc-CCCcceeecccccccccCCCce
Confidence 1123458899999999999999999999999999999999887 787776431 21 23344421 12356777
Q ss_pred HHHHHHhcCc-----------------EeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 391 ISEGLRKFGW-----------------IVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 391 l~~~L~~~G~-----------------~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
|.-.+...|+ .+..|.......+..++=+.+....+++++++|++.|+++++..++
T Consensus 373 l~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 373 LGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp HHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8777777662 1112222222334455666666677999999999999999876543
No 16
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.98 E-value=1.1e-29 Score=265.25 Aligned_cols=379 Identities=12% Similarity=0.087 Sum_probs=267.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhccCC---CCCcccccccCCChHHHHHHHHHHhcc-CCCCCc-CCcchHHHHHHHHHHH
Q 010897 30 FKMPDNSMPKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKLVMASINK-NYVDMD-EYPVTTELQNRCVNMI 104 (498)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~l~~~~~~-n~~~~~-~~~~~~~le~~~~~~l 104 (498)
+.+| +.+..++++.+.++...+.+ ..+.++ .++....|.+.+.+.+.+.. +++.++ .+++..+++.++++++
T Consensus 40 ~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l 116 (474)
T 1wyu_B 40 PRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYL 116 (474)
T ss_dssp CCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHH
T ss_pred CCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHH
Confidence 3566 78999999999887653321 112344 34444446665555554322 233332 3678889999999999
Q ss_pred HHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec
Q 010897 105 AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE 184 (498)
Q Consensus 105 a~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~ 184 (498)
++++|++. ..++|+||++|+.+++.+++.... ..|...++++|+++.++|.++..+++..|++++.||++
T Consensus 117 a~~~g~~~------~~~~~~ggt~a~~~al~~~~~~~~----~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~ 186 (474)
T 1wyu_B 117 KALTGMDA------ITLEPAAGAHGELTGILIIRAYHE----DRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG 186 (474)
T ss_dssp HHHHTCSE------EECCCSSHHHHHHHHHHHHHHHHH----HTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC
T ss_pred HHHHCCCc------eeecChHHHHHHHHHHHHHHHHHH----hcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC
Confidence 99999974 367889999999988887754211 12210124589999999999999999999999999997
Q ss_pred CCccccCHHHHHHHhhhCCeEEEEeeccCCcccc-cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc
Q 010897 185 EGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF 263 (498)
Q Consensus 185 ~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~ 263 (498)
++ +.+|+++|+++|+++|++|+++++| ++|.+ +|+++|.++|+++ |+++|+|++|+.+..++.. ..++
T Consensus 187 ~~-~~~d~~~L~~~i~~~t~~v~~~~pn-~~G~~~~~l~~i~~l~~~~------g~~li~Dea~~~~~~g~~~---~~~~ 255 (474)
T 1wyu_B 187 PE-GEVDLEALKRELGPHVAALMLTNPN-TLGLFERRILEISRLCKEA------GVQLYYDGANLNAIMGWAR---PGDM 255 (474)
T ss_dssp TT-SSBCHHHHHHHCSTTEEEEEECSSC-TTSCCCTTHHHHHHHHHHH------TCEEEEEGGGGGGTTTTCC---HHHH
T ss_pred CC-CCcCHHHHHHhhCCCceEEEEECCC-CCcccCCCHHHHHHHHHHc------CCEEEEeCchhhhhccCCC---cccC
Confidence 64 8899999999999999999999985 79999 7999999999999 9999999999876532111 1112
Q ss_pred CCCCeeEEEEcCCccCCCCC-----CeEEEEEeCCCCCCcccccc------cCccC---CCC--CCccccCCCchHHHHH
Q 010897 264 RLPLVKSINVSGHKYGLVYA-----GVGWVVWRTKDDLPDELVFH------INYLG---SDQ--PTFTLNFSKGSSQIIA 327 (498)
Q Consensus 264 ~~~~~dsi~~s~hK~l~~p~-----g~g~~~~~~~~~l~~~~~~~------~~yl~---~~~--~~~~l~~sr~~~~~~a 327 (498)
++|++++|+||++++|. |+|+++++++ .+ +.+... ..|.. ..+ ..+. .++.+.....+
T Consensus 256 ---g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~-~~l~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 329 (474)
T 1wyu_B 256 ---GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LA-PYLPVPLVERGEEGFYLDFDRPKSIGRVR-SFYGNFLALVR 329 (474)
T ss_dssp ---TCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GG-GGCCSCEEEECSSCEEEECCCTTCCCCSS-STTSCHHHHHH
T ss_pred ---CCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HH-HhCCCCeeeccCCeeEecccCcccCcccc-cCcCcHHHHHH
Confidence 48999999999998875 6899998763 22 221100 00100 000 0000 12223345566
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecC
Q 010897 328 QYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTM 407 (498)
Q Consensus 328 ~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~ 407 (498)
.+..+..+|.+++++..++..++++++.+.|+++ ++++..++...+.+.+.+ ..+.+..+++++|.++|+.++...+
T Consensus 330 a~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~L~~~Gi~~~~~~~ 406 (474)
T 1wyu_B 330 AWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP--PEGFRALDLAKGLLELGFHPPTVYF 406 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC--STTCCHHHHHHHHHHTTCCCCEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc--CCCCCHHHHHHHHHHCCcccccccc
Confidence 6677777788999999999999999999999998 587643322233233444 2246788999999999998654333
Q ss_pred CCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 408 PANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 408 ~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+. ....++|++++...|.++++++++.|++++++
T Consensus 407 ~~--~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 407 PL--IVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp ST--TSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred cc--ccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 31 12456999998888999999999999988765
No 17
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.98 E-value=1e-29 Score=257.42 Aligned_cols=342 Identities=15% Similarity=0.082 Sum_probs=250.2
Q ss_pred CCChHHHHHHHHHHhccCCCCCc-CCc---chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKNYVDMD-EYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n~~~~~-~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~ 141 (498)
+++++.+.+++.+.+.....++. .++ .......++++++++++|.+. ..+++|+|+++|+.+++.++...+
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~l~~~~ 84 (382)
T 4eb5_A 10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMRN 84 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT-----EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEcCchHHHHHHHHHHHHhhc
Confidence 35678888888887764222211 122 445677889999999999864 248999999999999998886321
Q ss_pred HHHHHhcCCCCCCcEEEEcCCchhHHHHHHHH---cCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccc
Q 010897 142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEF 218 (498)
Q Consensus 142 ~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~---~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~ 218 (498)
. .. +++|++++++|.++..+++. .|++++.++++++ +.+|+++|+++++++|++|++++++||||.+
T Consensus 85 ~----~~-----gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 154 (382)
T 4eb5_A 85 A----RK-----GKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGTI 154 (382)
T ss_dssp G----GG-----CCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCBB
T ss_pred c----CC-----CCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCC-CccCHHHHHHHhcCCCeEEEEeccCCCcccc
Confidence 0 01 46899999999998877765 5999999999864 7899999999999889999999999999999
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCc
Q 010897 219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD 298 (498)
Q Consensus 219 ~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~ 298 (498)
.|+++|.++|+++ |++ |+|++|+.+..++ ++...+.|+++.|+||+ +++.|+|+++++++..+..
T Consensus 155 ~~l~~i~~l~~~~------~~~-i~D~a~~~g~~~~-------~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~ 219 (382)
T 4eb5_A 155 QPVEEISEVLAGK------AAL-HIDATASVGQIEV-------DVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQP 219 (382)
T ss_dssp CCHHHHHHHHTTS------SEE-EEECTTTBTTBCC-------CHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCC
T ss_pred CCHHHHHHHHHHC------CCE-EEEcchhcCCccc-------CccccCCCEEEeehHHh-cCCCceEEEEEccccccCc
Confidence 9999999999999 999 9999998543221 11111478999999998 5678999999887531211
Q ss_pred ccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--CccEE
Q 010897 299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVPLV 376 (498)
Q Consensus 299 ~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~~v 376 (498)
.+.+..+......++.+...+.++.+++..+. +++.++.++..++++++.+.|++++++++..++. ..+++
T Consensus 220 ------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 292 (382)
T 4eb5_A 220 ------VILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNV 292 (382)
T ss_dssp ------SSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEE
T ss_pred ------eecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEE
Confidence 11111110001113444445555566665543 4688889999999999999999997788775431 25688
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCcEeeeecC--CCC----------C----CCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTM--PAN----------A----ENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~--~~~----------~----~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
.|+++ +.+..++.+.|.++|+.+..... +.. . .+..++|++++...+.++++++++.|+++
T Consensus 293 ~~~~~---~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 293 NVRFS---YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp EEEET---TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeC---CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 88885 25778999999999988754321 100 0 12468999998888999999999999999
Q ss_pred HHHHHcC
Q 010897 441 LKEIESL 447 (498)
Q Consensus 441 l~~l~~~ 447 (498)
++.+++.
T Consensus 370 ~~~~~~~ 376 (382)
T 4eb5_A 370 IERLRSM 376 (382)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9887653
No 18
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.97 E-value=5.7e-30 Score=261.99 Aligned_cols=336 Identities=13% Similarity=0.075 Sum_probs=251.3
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
|..+++.+.+++.+.+ .. ..++....+.+++++++++++|.+.+ ..+++|+|+++|+.+++.++.++
T Consensus 21 p~~~~~~v~~a~~~~~----~~-~~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~sgt~al~~~~~~~~~~---- 87 (411)
T 3nnk_A 21 PINADPRVLRAMSSQL----IG-QYDPAMTHYMNEVMALYRGVFRTENR----WTMLVDGTSRAGIEAILVSAIRP---- 87 (411)
T ss_dssp CCCCCHHHHHHHTSCC----CC-TTCHHHHHHHHHHHHHHHHHHTCCCS----EEEEEESCHHHHHHHHHHHHCCT----
T ss_pred CCCCCHHHHHHhhccc----cc-cccHHHHHHHHHHHHHHHHHhCCCCC----cEEEECCCcHHHHHHHHHHhcCC----
Confidence 4455677777665332 11 12455567788999999999999752 23678888999999988887432
Q ss_pred HHhcCCCCCCcEEEEcCCchhH--HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV 221 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l 221 (498)
+++|++++++|++ +..+++..|++++.+|++++ +.+|+++|++++++ ++++|++++++|+||.+.|+
T Consensus 88 ---------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 157 (411)
T 3nnk_A 88 ---------GDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG-EVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPL 157 (411)
T ss_dssp ---------TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred ---------CCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccH
Confidence 4799999999987 88999999999999999764 78999999999986 89999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc-
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL- 300 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~- 300 (498)
++|.++|+++ |+++|+|++++.+..++ ++...++|+++.++||+++++.|+|+++++++ .+ +.+
T Consensus 158 ~~i~~l~~~~------~~~li~Dea~~~~~~~~-------~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~-~~~~ 222 (411)
T 3nnk_A 158 AELGEICRRY------DALFYTDATASLGGNPL-------ETDVWGLDAVSAGMQKCLGGPSGTSPITLSAR-ME-EAIR 222 (411)
T ss_dssp TTHHHHHHHH------TCEEEEECTTTBTTBCC-------CTTTTTCSEEECCSTTTTCCCSSEEEEEECHH-HH-HHHH
T ss_pred HHHHHHHHHc------CCEEEEECCcccCCccc-------chhccCCcEEEecCccccCCCCceEEEEECHH-HH-HHHh
Confidence 9999999999 99999999997654322 22223589999999999999999999987643 11 111
Q ss_pred ---ccccCccCCCC-----------------------CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 010897 301 ---VFHINYLGSDQ-----------------------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAL 354 (498)
Q Consensus 301 ---~~~~~yl~~~~-----------------------~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l 354 (498)
...+.|.++.+ ......++.+...+.++.+++..+..+|++++.++..++++++
T Consensus 223 ~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l 302 (411)
T 3nnk_A 223 RRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDAL 302 (411)
T ss_dssp TTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 01112222111 0001124555566677777887777778899999999999999
Q ss_pred HHHHhcCCCeEEeeCCC--CccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEee-cCCCCHHHH
Q 010897 355 REGLEKTGRFEILSKDV--GVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVV-REDFSRSLV 430 (498)
Q Consensus 355 ~~~L~~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~ 430 (498)
.+.|++++ ++++.++. ..++++|.++. +.+..++.+.|.++ |+.+..... .....++|+++ ....+.+++
T Consensus 303 ~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~---~~~~~~iRi~~~~~~~~~~~i 376 (411)
T 3nnk_A 303 VKGIQAMG-LETFGDLKHKMNNVLGVVIPQ--GINGDQARKLMLEDFGIEIGTSFG---PLHGKVWRIGTMGYNARKDCV 376 (411)
T ss_dssp HHHHHHTT-CCBCSCGGGBCSSEEEEECCT--TCCHHHHHHHHHHHHSEEEEECCG---GGTTTEEEEECCGGGCSHHHH
T ss_pred HHHHHHcC-CEeCCCcccccccEEEEECCC--CCCHHHHHHHHHHhcCeEEeCccC---CCCCCEEEEeCccCcCCHHHH
Confidence 99999984 77765431 35678888843 46788999999887 988764321 12345799998 556689999
Q ss_pred HHHHHHHHHHHHHH
Q 010897 431 ERLISHIEEVLKEI 444 (498)
Q Consensus 431 ~~l~~~l~~~l~~l 444 (498)
+++++.|+++++++
T Consensus 377 ~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 377 MTTLSALEAVLNYL 390 (411)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998764
No 19
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.1e-29 Score=257.54 Aligned_cols=337 Identities=13% Similarity=0.069 Sum_probs=250.0
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+.+.++.+.+++.+.+.. .+ ++....+.+++++++++++|.+. . ..+++|+|+++|+.+++.++.++
T Consensus 28 ~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~-~---~~v~~~~g~t~a~~~~~~~l~~~---- 94 (386)
T 2dr1_A 28 PVACFPEVLEIMKVQMFS---HR--SKEYRKVHMDTVERLREFLEVEK-G---EVLLVPSSGTGIMEASIRNGVSK---- 94 (386)
T ss_dssp SCCCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCSS-S---EEEEESSCHHHHHHHHHHHHSCT----
T ss_pred CcCCcHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCC-C---cEEEEeCChHHHHHHHHHHhhcC----
Confidence 445567777766554432 11 23457788899999999999971 1 24889999999999998876432
Q ss_pred HHhcCCCCCCcEEEEcCCchhH--HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhh--hCCeEEEEeeccCCcccccC
Q 010897 145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGEFED 220 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~--~~t~~v~~~~~~t~tG~~~~ 220 (498)
+++|++++++|.+ +..+++..|++++.++++++ +.+|+++|++++. +++++|++++++|+||.+.|
T Consensus 95 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 164 (386)
T 2dr1_A 95 ---------GGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG-KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP 164 (386)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC
T ss_pred ---------CCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC-CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC
Confidence 4689999999998 89999999999999999764 7899999999994 57899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~ 300 (498)
+++|.++|+++ |+++|+|++|+.+..++ ++...++|+++.++||++++|.|+|+++.++. .+ +.+
T Consensus 165 l~~i~~l~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~-~~~ 229 (386)
T 2dr1_A 165 LPELAKVAKEH------DKLVFVDAVSAMGGADI-------KFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER-FL-EIA 229 (386)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTBTTBCC-------CTTTTTCSEEEEETTSTTCCCSSCEEEEECHH-HH-HHH
T ss_pred HHHHHHHHHHc------CCeEEEEccccccCccc-------cccccCCcEEEEeccccccCCCceEEEEECHH-HH-HHH
Confidence 99999999999 99999999998765321 12222579999999999998888999998642 11 111
Q ss_pred cc--ccCccCCC------CC-CccccCCCchHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC
Q 010897 301 VF--HINYLGSD------QP-TFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRFEILSKD 370 (498)
Q Consensus 301 ~~--~~~yl~~~------~~-~~~l~~sr~~~~~~a~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 370 (498)
.. ...+.... .. .....++.+.....++..+++.+... +++++.++..++++++.+.|+++ ++++..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 308 (386)
T 2dr1_A 230 EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEP 308 (386)
T ss_dssp TTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCT
T ss_pred hcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCc
Confidence 00 00000000 00 00111344444556666677666555 68889999999999999999998 58776542
Q ss_pred C--CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 371 V--GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 371 ~--~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
. ..++++|+++. +.+..++.++|.++|+.+.....+ ....++|++++...+.++++++++.|+++++++.
T Consensus 309 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 309 GHESPTITAVLTPP--GIKGDEVYEAMRKRGFELAKGYGS---VKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp TCBCSSEEEEECCT--TCCHHHHHHHHHHTTEECEECCGG---GTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEEEcCC--CCCHHHHHHHHHHCCeEEecCccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 35788888853 457889999999999887544321 1345799999888899999999999999988764
No 20
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=1.5e-29 Score=259.19 Aligned_cols=315 Identities=15% Similarity=0.097 Sum_probs=238.7
Q ss_pred cchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhH--HH
Q 010897 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WE 168 (498)
Q Consensus 91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~--~~ 168 (498)
+...++..++++++++++|.+.+ ...++++|+++|+.+++.++..+ +++|++++++|++ +.
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~----~~~~~~~s~t~al~~~~~~l~~~-------------gd~Vl~~~~~~~~~~~~ 102 (416)
T 3isl_A 40 PAFTGIMNETMEMLRELFQTKNR----WAYPIDGTSRAGIEAVLASVIEP-------------EDDVLIPIYGRFGYLLT 102 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCS----EEEEEESCHHHHHHHHHHHHCCT-------------TCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC----cEEEecCcHHHHHHHHHHHhcCC-------------CCEEEEecCCcccHHHH
Confidence 45567788999999999998752 12347888999999888876332 4789999999998 88
Q ss_pred HHHHHcCCeeEEEEecCCccccCHHHHHHHhh-hCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCc
Q 010897 169 KFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS 247 (498)
Q Consensus 169 ~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~-~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~ 247 (498)
.+++..|++++.++++++ +.+|+++|+++++ ++|++|++++++|+||.+.|+++|.++|+++ |+++|+|+++
T Consensus 103 ~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~a~ 175 (416)
T 3isl_A 103 EIAERYGANVHMLECEWG-TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTE------DALFIVDAVA 175 (416)
T ss_dssp HHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHT------TCEEEEECTT
T ss_pred HHHHhcCCeeEEEecCCC-CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHc------CCEEEEECCc
Confidence 889999999999999875 7899999999998 6899999999999999999999999999999 9999999999
Q ss_pred ccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccc-----------------------ccc
Q 010897 248 GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV-----------------------FHI 304 (498)
Q Consensus 248 ~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~-----------------------~~~ 304 (498)
+.+..++ ++...++|+++.++||+++++.|+|+++.+++ .. +.+. ...
T Consensus 176 ~~~~~~~-------~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~ 246 (416)
T 3isl_A 176 TIGGCEV-------KVDEWKIDAAIGGTQKCLSVPSGMAPITYNER-VA-DVIAARKKVERGIATQADRAALSGNRPITS 246 (416)
T ss_dssp TTTTSCC-------CTTTTTCSEEECCSSSTTCCCSSEEEEEECHH-HH-HHHHTC------------------CCCCSC
T ss_pred cccCCCc-------chhhcCCCEEEecCccccCCCCCeEEEEECHH-HH-HHhhccccccccccccccchhccCCCCCCc
Confidence 8654322 22223589999999999999999999987653 11 1110 000
Q ss_pred CccC------CCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--CccEE
Q 010897 305 NYLG------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVPLV 376 (498)
Q Consensus 305 ~yl~------~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~~v 376 (498)
.|+. .........++.+.....++.+++..+...|++++.++..++++++.+.|++. +++++.++. ..+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 325 (416)
T 3isl_A 247 NYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVT 325 (416)
T ss_dssp STTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEE
T ss_pred cccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEE
Confidence 0000 00000011245555667777788887777778999999999999999999997 587765432 24688
Q ss_pred EEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEeecCCCCHHH-HHHHHHHHHHHHHHH
Q 010897 377 AFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVREDFSRSL-VERLISHIEEVLKEI 444 (498)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~-~~~l~~~l~~~l~~l 444 (498)
+|.++. +.+..++.+.|.++ |+.+..... .....++|++++...+.++ ++++++.|+++++.+
T Consensus 326 ~~~~~~--~~~~~~l~~~L~~~~gi~v~~g~~---~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 326 CVEIPG--GIDGESVRDMLLAQFGIEIASSFG---PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp EEECCT--TCCHHHHHHHHHHHHCEECBCCCS---TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCC--CCCHHHHHHHHHHhCCEEEecCCC---CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 888843 46788999999887 988754321 1334689999966667777 999999999998765
No 21
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=2.6e-28 Score=247.05 Aligned_cols=341 Identities=16% Similarity=0.116 Sum_probs=242.6
Q ss_pred CChHHHHHHHHHHhccCCCCCcC-C---cchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDE-Y---PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~-~---~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~ 142 (498)
++++.+.+++.+.+...+..+.. + ........++++++++++|.+.+ .+++|+|+++|+.+++.++....
T Consensus 12 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-----~v~~~~g~t~a~~~~~~~~~~~~- 85 (384)
T 1eg5_A 12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-----EIFFTSCATESINWILKTVAETF- 85 (384)
T ss_dssp CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-----GEEEESCHHHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-----eEEEECCHHHHHHHHHHhhhhhc-
Confidence 56788888888887653222211 1 23356667888999999998642 38999999999999998886310
Q ss_pred HHHHhcCCCCCCcEEEEcCCchhHHHHHH---HHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCccccc
Q 010897 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFE 219 (498)
Q Consensus 143 ~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~---~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~ 219 (498)
...+++|+++.++|.++...+ +..|++++.+|++++ +.+|+++|++++++++++|++++++||||.+.
T Consensus 86 --------~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~ 156 (384)
T 1eg5_A 86 --------EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR-GVVKLEELEKLVDEDTFLVSIMAANNEVGTIQ 156 (384)
T ss_dssp --------TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT-SCBCHHHHHHHCCTTEEEEEEESBCTTTCBBC
T ss_pred --------cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCC-CccCHHHHHHHhCCCCeEEEEECCCCCccccc
Confidence 001468999999999887666 678999999998764 78999999999998899999999999999999
Q ss_pred CHHHHHHHHHHhhcccCCC--ceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCC
Q 010897 220 DVKLLHDLLTKKNEETGWD--TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP 297 (498)
Q Consensus 220 ~l~~I~~la~~~~~~~~~~--~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~ 297 (498)
|+++|.++|+++ + +++|+|++|+.+..++ ++...+.|+++.|+||+ +++.|+|+++.+++..+.
T Consensus 157 ~~~~i~~l~~~~------~~~~~li~Dea~~~~~~~~-------~~~~~~~di~~~s~sK~-~g~~G~G~~~~~~~~~~~ 222 (384)
T 1eg5_A 157 PVEDVTRIVKKK------NKETLVHVDAVQTIGKIPF-------SLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVPIR 222 (384)
T ss_dssp CHHHHHHHHHHH------CTTCEEEEECTTTTTTSCC-------CCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSCCC
T ss_pred CHHHHHHHHHhc------CCceEEEEEhhhhcCCccc-------CchhcCCCEEEecHHHh-cCCCceEEEEEcCCCccc
Confidence 999999999999 8 9999999997432111 12112579999999998 567789999987542111
Q ss_pred cccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--CccE
Q 010897 298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVPL 375 (498)
Q Consensus 298 ~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~~ 375 (498)
. .+.+.........++.+.....+...++..+ .+.+++..++..++++++.+.|++ +++++..++. ...+
T Consensus 223 ~------~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~ 294 (384)
T 1eg5_A 223 P------LIHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNT 294 (384)
T ss_dssp C------SBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTE
T ss_pred c------ccccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCE
Confidence 1 1111111000112344444444555556543 346788889999999999999998 4588875432 2357
Q ss_pred EEEEecCCCCCCHHHHHHHHHhcCcEeeeec-C-CCC----------C----CCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 376 VAFSLKDSSAHTVFEISEGLRKFGWIVPAYT-M-PAN----------A----ENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 376 v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~-~-~~~----------~----~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
+.|.+++ .+..++.+.|.++|+.+.... . +.. . ....++|++++...+.++++++++.|++
T Consensus 295 ~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 371 (384)
T 1eg5_A 295 LSVSFPN---IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE 371 (384)
T ss_dssp EEEECTT---CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEeCC---CCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7787753 467899999999998875421 1 100 0 0246899999877899999999999999
Q ss_pred HHHHHHcC
Q 010897 440 VLKEIESL 447 (498)
Q Consensus 440 ~l~~l~~~ 447 (498)
+++++++.
T Consensus 372 ~~~~~~~~ 379 (384)
T 1eg5_A 372 ILSFLDLT 379 (384)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 98876543
No 22
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=2.9e-29 Score=254.80 Aligned_cols=329 Identities=14% Similarity=0.067 Sum_probs=243.0
Q ss_pred CChHHHHHHHHHHhccCC----CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHH-HHH
Q 010897 67 WMEPECDKLVMASINKNY----VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKW 141 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~----~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~-~~~ 141 (498)
++++.+.+++.+.+.... .....|+.......++++.+++++|.+.+ .+++|+|+++|+.+++.+++ +
T Consensus 27 ~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~-----~v~~~~g~t~a~~~~~~~~~~~-- 99 (390)
T 1elu_A 27 ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN-----TITITDNVTTGCDIVLWGLDWH-- 99 (390)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG-----GEEEESSHHHHHHHHHHHSCCC--
T ss_pred CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHH-----HEEEeCChHHHHHHHHhCCCCC--
Confidence 455678888877765421 11113343345666888889999998642 38999999999999888762 2
Q ss_pred HHHHHhcCCCCCCcEEEEcCCchhHHHH----HHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEeeccCCcc
Q 010897 142 QQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTG 216 (498)
Q Consensus 142 ~~~~~~~g~~~~~~~Iv~s~~~h~~~~~----~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG 216 (498)
.+++|+++.++|.++.. .++..|++++.++++. +++.+|+++|++++++++++|++++++|+||
T Consensus 100 -----------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 100 -----------QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTG 168 (390)
T ss_dssp -----------TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTC
T ss_pred -----------CCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCc
Confidence 14689999999998654 4677899999999872 3478999999999998899999999999999
Q ss_pred cccCHHHHHHHHH----HhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeC
Q 010897 217 EFEDVKLLHDLLT----KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT 292 (498)
Q Consensus 217 ~~~~l~~I~~la~----~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~ 292 (498)
.+.|+++|.++|+ ++ |+++|+|++|+.+..++ ++.....|+++.|+|||++++.|+|++++++
T Consensus 169 ~~~~~~~i~~l~~~~~~~~------~~~li~Dea~~~g~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~ 235 (390)
T 1elu_A 169 QVLPLAEIMAVCRRHQGNY------PVRVLVDGAQSAGSLPL-------DFSRLEVDYYAFTGHKWFAGPAGVGGLYIHG 235 (390)
T ss_dssp CBCCHHHHHHHHHHCCSSS------CCEEEEECTTTBTTBCC-------CTTTSCCSEEEEESSSTTCCCTTCEEEEECT
T ss_pred eecCHHHHHHHHhhhhhhc------CcEEEEEcccccCCcCC-------ChhhcCCCEEEccccccccCCCceEEEEECH
Confidence 9999999999999 88 99999999998654321 1222357899999999999999999999875
Q ss_pred CCCCCcccccccCccCCCC----------------CCccccCCCchHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHH
Q 010897 293 KDDLPDELVFHINYLGSDQ----------------PTFTLNFSKGSSQIIAQYYQFIRLGFEG-YKNIMENCMGNARALR 355 (498)
Q Consensus 293 ~~~l~~~~~~~~~yl~~~~----------------~~~~l~~sr~~~~~~a~~~~l~~lg~~g-~~~~~~~~~~~a~~l~ 355 (498)
+ .+ +.+.. ...+... ..+ ..++.+.....++.+++..+...+ +.++.++..++++++.
T Consensus 236 ~-~~-~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~ 310 (390)
T 1elu_A 236 D-CL-GEINP--TYVGWRSITYGAKGEPTGWAEGGKRF-EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLW 310 (390)
T ss_dssp T-TG-GGCCC--CSCCTTTEEECTTSCEEEECSGGGGG-CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred H-hH-hhcCC--ccccCCcccccccCcccccccchHhh-CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3 22 22111 0001000 011 113444455566777777776666 7888999999999999
Q ss_pred HHHhcCCCeEEeeC-CCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHH
Q 010897 356 EGLEKTGRFEILSK-DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 356 ~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
+.|+++++++++.+ +...++++|+++. +.+..++.++|.++|+.+.... ...++|++++...+.+++++++
T Consensus 311 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~------~~~~iRis~~~~~~~~~i~~~~ 382 (390)
T 1elu_A 311 RGLNQLPHVHCLATSAPQAGLVSFTVDS--PLGHRAIVQKLEEQRIYLRTIA------DPDCIRACCHYITDEEEINHLL 382 (390)
T ss_dssp HHHHHSTTEEESCSSCCSSSEEEEEECS--SSCHHHHHHHHHHTTEECEEET------TTTEEEEECCTTCCHHHHHHHH
T ss_pred HHHHhcCCcEEecCccccccEEEEEcCC--CCCHHHHHHHHHHCCEEEEecC------CCCeEEEecccCCCHHHHHHHH
Confidence 99999877988754 2357889998842 4577899999999998875542 2357999997777888888877
Q ss_pred HHHHH
Q 010897 435 SHIEE 439 (498)
Q Consensus 435 ~~l~~ 439 (498)
+.|++
T Consensus 383 ~~l~~ 387 (390)
T 1elu_A 383 ARLAD 387 (390)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 77653
No 23
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.97 E-value=3.4e-28 Score=249.96 Aligned_cols=344 Identities=16% Similarity=0.117 Sum_probs=251.1
Q ss_pred CCChHHHHHHHHHHhc--cCCCCCcC-----CcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASIN--KNYVDMDE-----YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK 138 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~--~n~~~~~~-----~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~ 138 (498)
.++++.+.+++.+.+. ..+.++.. .....+...++++++++++|.+. ..+++|+|+++|+.+++.++.
T Consensus 32 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggt~a~~~a~~~l~ 106 (423)
T 3lvm_A 32 TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP-----REIVFTSGATESDNLAIKGAA 106 (423)
T ss_dssp CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCC-----CeEEEeCChHHHHHHHHHHHH
Confidence 3567888888888777 43332221 12445667789999999999874 249999999999999998887
Q ss_pred HHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHc---CCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCc
Q 010897 139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT 215 (498)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~t 215 (498)
+.+. ..+++|+++.++|.++..++..+ |++++.++++++ +.+|+++|++++++++++|+++.++|+|
T Consensus 107 ~~~~---------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~npt 176 (423)
T 3lvm_A 107 NFYQ---------KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN-GIIDLKELEAAMRDDTILVSIMHVNNEI 176 (423)
T ss_dssp HHHT---------TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHCCTTEEEEECCSBCTTT
T ss_pred Hhhc---------cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCC-CccCHHHHHHhcCCCcEEEEEeCCCCCC
Confidence 5321 01478999999999998887555 999999999874 8899999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCC
Q 010897 216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD 295 (498)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~ 295 (498)
|.+.|+++|.++|+++ |++|++|++|+.+..++ +....+.|+++.++||+ +++.|+|+++++++..
T Consensus 177 G~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~~-------~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~ 242 (423)
T 3lvm_A 177 GVVQDIAAIGEMCRAR------GIIYHVDATQSVGKLPI-------DLSQLKVDLMSFSGHKI-YGPKGIGALYVRRKPR 242 (423)
T ss_dssp CBBCCHHHHHHHHHHH------TCEEEEECTTTTTTSCC-------CTTTSCCSEEEEESTTT-TSCSSCEEEEECBTTB
T ss_pred ccccCHHHHHHHHHHc------CCEEEEEhhhhcCCCCc-------ChhhcCCCEEEechHHh-cCCCCeEEEEEecccc
Confidence 9999999999999999 99999999998754322 12222478999999995 5788899999875421
Q ss_pred CCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--Cc
Q 010897 296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GV 373 (498)
Q Consensus 296 l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~ 373 (498)
.. +...+.+.........++.+...+.++.+++..+... +++..++..+++++|.+.|+++++++++.++. ..
T Consensus 243 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 317 (423)
T 3lvm_A 243 --VR--IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAP 317 (423)
T ss_dssp --CC--CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCT
T ss_pred --CC--CCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCC
Confidence 11 1111111111111112444445555566666655433 78888999999999999999998898876542 23
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecC--CCC--------------CCCeeEEEEeecCCCCHHHHHHHHHHH
Q 010897 374 PLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTM--PAN--------------AENVAVLRVVVREDFSRSLVERLISHI 437 (498)
Q Consensus 374 ~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~--~~~--------------~~~~~~lRv~v~~~~t~~~~~~l~~~l 437 (498)
+++.|.++ +.+..++.+.|.+ +.+..... +.. .....++|++++...+.++++++++.|
T Consensus 318 ~~~~~~~~---~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l 392 (423)
T 3lvm_A 318 NILNVSFN---YVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELV 392 (423)
T ss_dssp TEEEEEET---TSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEeC---CCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHH
Confidence 68888884 3577889888877 55433211 000 001368999999888999999999999
Q ss_pred HHHHHHHHcCc
Q 010897 438 EEVLKEIESLP 448 (498)
Q Consensus 438 ~~~l~~l~~~~ 448 (498)
+++++.+++..
T Consensus 393 ~~~~~~~~~~~ 403 (423)
T 3lvm_A 393 RKSIGRLRDLS 403 (423)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHhhccC
Confidence 99999887654
No 24
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=2.5e-29 Score=254.55 Aligned_cols=335 Identities=18% Similarity=0.086 Sum_probs=250.7
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
|.++++.+.+++.+.+... .++....+.+++++++++++|.+.+. ..+++|+|+++|+. ++.++..
T Consensus 10 p~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~---~~v~~~~g~t~al~-~~~~~~~----- 75 (384)
T 3zrp_A 10 PTTIKEDVLVAGLENNVGF-----TSKEFVEALAYSLKGLRYVMGASKNY---QPLIIPGGGTSAME-SVTSLLK----- 75 (384)
T ss_dssp CSCCCHHHHHHTTCCSCCT-----TSHHHHHHHHHHHHHHHHHHTCCTTS---EEEEEESCHHHHHH-HGGGGCC-----
T ss_pred CCCCCHHHHHHhhcccccc-----ccHHHHHHHHHHHHHHHHHhCCCCCC---cEEEEcCCcHHHHH-HHHhhcC-----
Confidence 4456677777665544321 24555677888999999999997521 24899999999998 7766532
Q ss_pred HHhcCCCCCCcEEEEcCCchhH--HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV 221 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l 221 (498)
.+++|+++++.|++ +...++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+
T Consensus 76 --------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 146 (384)
T 3zrp_A 76 --------PNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG-DYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPV 146 (384)
T ss_dssp --------TTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT-CCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCH
T ss_pred --------CCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC-CCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcH
Confidence 14689999999965 77777889999999999875 78999999999998 79999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc-
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL- 300 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~- 300 (498)
++|.++|+++ |+++|+|++++.+..++ ++...++|+++.++||+++++.|+|+++.+++ .+ +.+
T Consensus 147 ~~i~~l~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~ 211 (384)
T 3zrp_A 147 KDVINKIRKY------VELIVVDGVSSVGAEEV-------KAEEWNVDVYLTASQKALGSAAGLGLLLLSPK-AL-SILD 211 (384)
T ss_dssp HHHHHHHGGG------EEEEEEECTTTTTTSCC-------CTTTTTCSEEEEETTSTTCCCSSEEEEEECHH-HH-HHHH
T ss_pred HHHHHHHHhc------CCEEEEECcccccCccc-------cccccCCCEEEecCcccccCCCceEEEEECHH-HH-HHhc
Confidence 9999999999 99999999998654322 22222589999999999988999999997653 11 111
Q ss_pred cc--ccCccCCC-------CC----CccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 010897 301 VF--HINYLGSD-------QP----TFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (498)
Q Consensus 301 ~~--~~~yl~~~-------~~----~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (498)
.. ...|.... .. .....++.+...+.++.+++..+...+++++.++..++++++.+.|+++ +++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 290 (384)
T 3zrp_A 212 SQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIV 290 (384)
T ss_dssp HCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred CCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEc
Confidence 00 00000000 00 0000135555666777788887777788999999999999999999998 58776
Q ss_pred eCC---CCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 368 SKD---VGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 368 ~~~---~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.++ ...++++|.+++ .+..++.+.|.++|+.+......+ . .++|+++...++.++++++++.|+++++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~--~--~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 291 ARRPESYSNTVTGVILKV---ADPQKVLAGTVNEGVEFAPGVHPA--F--KYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp CSSGGGBCSSEEEEECSS---SCHHHHHHHHHTTTCCCEECCCTT--C--CEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCccEEEEECCC---CCHHHHHHHHHHCCEEEecCCCCC--c--CEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 543 135677788753 578899999999998876433111 1 789999988889999999999999999876
Q ss_pred H
Q 010897 445 E 445 (498)
Q Consensus 445 ~ 445 (498)
.
T Consensus 364 ~ 364 (384)
T 3zrp_A 364 G 364 (384)
T ss_dssp T
T ss_pred C
Confidence 4
No 25
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=6.2e-29 Score=252.77 Aligned_cols=335 Identities=11% Similarity=0.021 Sum_probs=245.4
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+.++++.+.+++.+.+.. ..++.......++++++++++|.+.+ .+++|+|+++|+.+++.++.++
T Consensus 17 ~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-----~v~~t~g~t~a~~~~~~~~~~~---- 82 (392)
T 2z9v_A 17 PVNAYPEVLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAMRLSNK-----PVILHGEPVLGLEAAAASLISP---- 82 (392)
T ss_dssp CCCCCHHHHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHTTCSSC-----CEEESSCTHHHHHHHHHHHCCT----
T ss_pred CcCCCHHHHHHHhccccc-----cccHHHHHHHHHHHHHHHHHhCCCCC-----EEEEeCCchHHHHHHHHHhcCC----
Confidence 445667787877665543 12345556667889999999998642 3899999999999998887321
Q ss_pred HHhcCCCCCCcEEEEcCCchhHH--HHHHHHcCCeeEEEEecCCccccCHHHHHHHhh--hCCeEEEEeeccCCcccccC
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGEFED 220 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~--~~t~~v~~~~~~t~tG~~~~ 220 (498)
+++|++++++|+++ ...++..|++++.++++++ +.+|+++|+++++ +++++|++++++|+||.+.|
T Consensus 83 ---------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 152 (392)
T 2z9v_A 83 ---------DDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP 152 (392)
T ss_dssp ---------TCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC
T ss_pred ---------CCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc
Confidence 46899999999875 4555668999999999865 6799999999995 47899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~ 300 (498)
+++|.++|+++ |+++|+|++|+.+..++ ++...++|+++.|+||+++++.|+|++++++. .+ +.+
T Consensus 153 l~~i~~l~~~~------~~~li~D~a~~~g~~~~-------~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~-~~l 217 (392)
T 2z9v_A 153 IDAIGALVSAH------GAYLIVDAVSSFGGMKT-------HPEDCKADIYVTGPNKCLGAPPGLTMMGVSER-AW-AKM 217 (392)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTBTTBSC-------CGGGGTCSEEEECSSSTTCCCSCCEEEEECHH-HH-HHH
T ss_pred HHHHHHHHHHc------CCeEEEEcccccCCccc-------ccccccceEEEecCcccccCCCceeEEEECHH-HH-HHh
Confidence 99999999999 99999999998643321 11111478999999999999999999997642 11 111
Q ss_pred cc-c--c--CccC------CCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeC
Q 010897 301 VF-H--I--NYLG------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK 369 (498)
Q Consensus 301 ~~-~--~--~yl~------~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (498)
.. . . .|++ ..+......++.+...+.++.+++..+...|+.++.++..++++++.+.|+++ ++++..+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 296 (392)
T 2z9v_A 218 KANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAA 296 (392)
T ss_dssp HTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSS
T ss_pred hhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 10 0 0 1111 00011111245555556666777777766678889999999999999999988 5877652
Q ss_pred CC---CccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEeecC-CCCHHHHHHHHHHHHHHHHHH
Q 010897 370 DV---GVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVRE-DFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 370 ~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v~~-~~t~~~~~~l~~~l~~~l~~l 444 (498)
+. ..++++|+++. +.+..++.++|.++ |+.+.....+ ....++|+++.. ..+.++++++++.|+++++++
T Consensus 297 ~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~gi~v~~g~~~---~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 297 SDSIASPTTTAVRTPD--GVDEKALRQAARARYGVVFSSGRGE---TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp SGGGBCTTEEEEECCT--TCCHHHHHHHHHHHHCEECEECCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CccccCCceEEEECCC--CCCHHHHHHHHHhcCCEEEecCCCC---CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 21 35778888742 45778999999998 9887543321 234679999644 779999999999999988754
No 26
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.97 E-value=6.5e-29 Score=252.67 Aligned_cols=336 Identities=13% Similarity=0.100 Sum_probs=244.1
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+.++++.+.+++.+.+... + ++.......++++++++++|.+.+ ..+++|+|+++|+.+++.++.++
T Consensus 27 ~~~~~~~v~~a~~~~~~~~---~--~~~~~~~~~~l~~~la~~~g~~~~----~~i~~~~g~t~a~~~~~~~~~~~---- 93 (393)
T 2huf_A 27 PSNAPQRVLDAMSRPILGH---L--HPETLKIMDDIKEGVRYLFQTNNI----ATFCLSASGHGGMEATLCNLLED---- 93 (393)
T ss_dssp CCCCCHHHHHHTTSCCCCT---T--SHHHHHHHHHHHHHHHHHHTCCCS----EEEEESSCHHHHHHHHHHHHCCT----
T ss_pred CCCCCHHHHHHHHhhhccC---C--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEcCcHHHHHHHHHHHHhCC----
Confidence 3456677877776655431 1 344556777899999999998642 14889999999999998887332
Q ss_pred HHhcCCCCCCcEEEEcCCchhHH--HHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV 221 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l 221 (498)
+++|++++++|.++ ...++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+
T Consensus 94 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 163 (393)
T 2huf_A 94 ---------GDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG-QSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGL 163 (393)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred ---------CCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC-CCCCHHHHHHHHhccCCcEEEEEccCCCccccCCH
Confidence 46899999999874 4456778999999999765 78999999999988 89999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccc
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~ 301 (498)
++|.++|+++ |+++|+|++++.+..++ ++...++|+++.++||+++++.|+|++++++ +.. +.+.
T Consensus 164 ~~i~~~~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~-~~~-~~~~ 228 (393)
T 2huf_A 164 EGVGALCHQH------NCLLIVDTVASLGGAPM-------FMDRWEIDAMYTGSQKVLGAPPGITPVSFSH-RAV-ERYK 228 (393)
T ss_dssp TTHHHHHHHT------TCEEEEECTTTBTTBCC-------CTTTTTCSEEECCSSSTTCCCSSCEEEEECH-HHH-HHHH
T ss_pred HHHHHHHHHc------CCEEEEEcccccCCCCc-------chhhcCccEEEECCCcccccCCCeEEEEECH-HHH-HHHh
Confidence 9999999999 99999999987543221 1222247999999999998899999999863 221 1111
Q ss_pred cc----cCc----------cCCCC-CCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 010897 302 FH----INY----------LGSDQ-PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366 (498)
Q Consensus 302 ~~----~~y----------l~~~~-~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 366 (498)
.. ..| .+... ..+. .++.+.....++.+++..+..+++.+..++..++++++.+.|+++ ++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 306 (393)
T 2huf_A 229 RRNTKVKVYYWDMSLVGDYWGCFGRPRIY-HHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFEL 306 (393)
T ss_dssp TCSSCCSCGGGCHHHHHHHTTCSSSCCCC-SCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred hcCCCCceEEEchHHHHhhhccccccCCC-CCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 00 111 11111 1111 134444555666667776665678888999999999999999998 5777
Q ss_pred eeCCC-Cc-cEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEee-cCCCCHHHHHHHHHHHHHHHH
Q 010897 367 LSKDV-GV-PLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 367 ~~~~~-~~-~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~~~l~~~l~~~l~ 442 (498)
+.++. .. .++.|+++. +.+..++.++|.++ |+.+.....+ ....++|+++ ....+.++++++++.|+++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~gi~v~~g~~~---~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~ 381 (393)
T 2huf_A 307 YADPKDRLSTVTTIKVPQ--GVDWLKAAQYAMKTYLVEISGGLGP---TAGQVFRIGLMGQNATTERVDRVLQVFQEAVA 381 (393)
T ss_dssp SSCGGGBCTTEEEEECCT--TCCHHHHHHHHHHHHCEECBCCCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred ccCccccCCcEEEEEcCC--CCCHHHHHHHHHHhCCEEEecCccc---ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH
Confidence 65421 23 377788742 45778999999865 9887543211 1346799999 434578899999999999987
Q ss_pred HHH
Q 010897 443 EIE 445 (498)
Q Consensus 443 ~l~ 445 (498)
.++
T Consensus 382 ~~~ 384 (393)
T 2huf_A 382 AVK 384 (393)
T ss_dssp HHC
T ss_pred HcC
Confidence 664
No 27
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=4.4e-29 Score=256.00 Aligned_cols=355 Identities=16% Similarity=0.131 Sum_probs=253.1
Q ss_pred CcccccccCCChHHHHHHHHHHhccCCCCC----cCCc-chHHHHHHHHHHHHHHcCC-CCCCCCCcceeeecChhHHHH
Q 010897 58 LNLASFVTTWMEPECDKLVMASINKNYVDM----DEYP-VTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIM 131 (498)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~l~~~~~~n~~~~----~~~~-~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~g~sea~~ 131 (498)
++|.+..+.++++.+.+++.+.+......+ ..++ .......++++++++++|. +. ..+++|+|+++|+.
T Consensus 30 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~~ 104 (420)
T 1t3i_A 30 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP-----REIVYTRNATEAIN 104 (420)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHHH
T ss_pred EEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEcCChHHHHH
Confidence 344444455567888888888876532111 1122 1245556788899999998 32 24899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhH----HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEE
Q 010897 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVA 207 (498)
Q Consensus 132 la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~----~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~ 207 (498)
+++.++++... ..+++|+++.++|.+ +...++..|++++.++++++ +.+|+++|++++++++++|+
T Consensus 105 ~~~~~~~~~~~---------~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v~ 174 (420)
T 1t3i_A 105 LVAYSWGMNNL---------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ-ESFDLEHFKTLLSEKTKLVT 174 (420)
T ss_dssp HHHHHTHHHHC---------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT-SSBCHHHHHHHCCTTEEEEE
T ss_pred HHHHHhhhccc---------CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCC-CCcCHHHHHHhhCCCceEEE
Confidence 99988742100 014689999999997 77888889999999999754 78999999999998999999
Q ss_pred EeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEE
Q 010897 208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW 287 (498)
Q Consensus 208 ~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~ 287 (498)
+++++|+||.+.|+++|.++|+++ |+++|+|++|+.+..++ ++...+.|+++.|+|| ++++.|+|+
T Consensus 175 ~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~sK-~~~~~g~G~ 240 (420)
T 1t3i_A 175 VVHISNTLGCVNPAEEIAQLAHQA------GAKVLVDACQSAPHYPL-------DVQLIDCDWLVASGHK-MCAPTGIGF 240 (420)
T ss_dssp EESBCTTTCBBCCHHHHHHHHHHT------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEEEGGG-TTSCTTCEE
T ss_pred EeCCcccccCcCCHHHHHHHHHHc------CCEEEEEhhhccCCccC-------chhhcCCCEEEEehhh-hcCCCceEE
Confidence 999999999999999999999999 99999999998764321 1111147899999999 557888999
Q ss_pred EEEeCCCCCCcccc-cccCccC-----C-----CCCCccc-cCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 010897 288 VVWRTKDDLPDELV-FHINYLG-----S-----DQPTFTL-NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALR 355 (498)
Q Consensus 288 ~~~~~~~~l~~~~~-~~~~yl~-----~-----~~~~~~l-~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~ 355 (498)
++.++. .. +.+. ....+.. . ......+ .++.+....+++..+++.+...++.++.++..++++++.
T Consensus 241 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 318 (420)
T 1t3i_A 241 LYGKEE-IL-EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLW 318 (420)
T ss_dssp EEECHH-HH-HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEchH-HH-hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 987642 21 1111 0000000 0 0001111 134444455555557777766678888999999999999
Q ss_pred HHHhcCCCeEEeeCC----CCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCC----CCCC-eeEEEEeecCCCC
Q 010897 356 EGLEKTGRFEILSKD----VGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA----NAEN-VAVLRVVVREDFS 426 (498)
Q Consensus 356 ~~L~~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~----~~~~-~~~lRv~v~~~~t 426 (498)
+.|+++++++++.+. ...++++|.+++ .+..++.+.|.++|+.+.....+. ...+ ..++|++++..++
T Consensus 319 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~ 395 (420)
T 1t3i_A 319 QGLGQIPQLRLYGPNPKHGDRAALASFNVAG---LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNT 395 (420)
T ss_dssp HHHHTCTTEEEESCCGGGSCBCSEEEEEETT---BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCC
T ss_pred HHHHhCCCeEEeCCCccccccCCEEEEEECC---CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCC
Confidence 999999779887653 136888998753 567789999999998875432110 0012 4679999988789
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 010897 427 RSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 427 ~~~~~~l~~~l~~~l~~l~~ 446 (498)
.++++++++.|+++++.+++
T Consensus 396 ~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 396 KEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999877644
No 28
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.97 E-value=2.5e-29 Score=251.43 Aligned_cols=333 Identities=14% Similarity=0.070 Sum_probs=244.3
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
|.++++.+.+++.+.+.. ..++.......++++++++++|.+.+ ...+++|+|+++|+.+++.++.+
T Consensus 8 p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~---~~~v~~t~g~t~a~~~~~~~~~~----- 74 (353)
T 2yrr_A 8 PTPIPERVQKALLRPMRG-----HLDPEVLRVNRAIQERLAALFDPGEG---ALVAALAGSGSLGMEAGLANLDR----- 74 (353)
T ss_dssp SCCCCHHHHGGGGSCCCC-----TTCHHHHHHHHHHHHHHHHHHCCCTT---CEEEEESSCHHHHHHHHHHTCSC-----
T ss_pred CCCCCHHHHHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhCCCCC---CceEEEcCCcHHHHHHHHHHhcC-----
Confidence 445667787777666543 13455667788999999999998621 13489999999999988876521
Q ss_pred HHhcCCCCCCcEEEEcCCchhH--HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV 221 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l 221 (498)
++|+++++.|++ +...++..|++++.++++++ +.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus 75 ----------d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 143 (353)
T 2yrr_A 75 ----------GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPG-EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPA 143 (353)
T ss_dssp ----------CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTT-SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCH
T ss_pred ----------CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCH
Confidence 468898888887 45677889999999999765 78999999999998 89999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccc
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~ 301 (498)
++|.++|+++ |+++|+|++|+.+..++ ++...++|++++++||+++++.|+|+++++++ .+ +.+.
T Consensus 144 ~~i~~l~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~-~~l~ 208 (353)
T 2yrr_A 144 EAIGALAKEA------GALFFLDAVTTLGMLPF-------SMRAMGVDYAFTGSQKCLSAPPGLAPIAASLE-AR-KAFT 208 (353)
T ss_dssp HHHHHHHHHH------TCEEEEECTTTTTTSCC-------CHHHHTCSEEECCTTSTTCCCSSCEEEEECHH-HH-HHCC
T ss_pred HHHHHHHHHc------CCeEEEEcCcccccccc-------cccccCceEEEecCcccccCCCceEEEEECHH-HH-HHhc
Confidence 9999999999 99999999997543221 11111468999999999999999999998653 11 1111
Q ss_pred ccc-CccC-----CCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC-Ccc
Q 010897 302 FHI-NYLG-----SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-GVP 374 (498)
Q Consensus 302 ~~~-~yl~-----~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-~~~ 374 (498)
... .|+. .........++.+.....++.+++..+..+++.++.++..++++++.+.|+++ +++++.++. ...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 287 (353)
T 2yrr_A 209 GKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPT 287 (353)
T ss_dssp CCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTT
T ss_pred cCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCe
Confidence 001 1110 00000111244444555666677777766778899999999999999999998 588876432 345
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHH-HHHHHHHHHHH
Q 010897 375 LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVE-RLISHIEEVLK 442 (498)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~-~l~~~l~~~l~ 442 (498)
+++|+++. +.+..++.++|.++|+.+.....+ ....++|++++...+.++++ ++++.|+++++
T Consensus 288 ~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 288 VLVVRPPE--GVDADRLVRALYAEGVAVAGGIGP---TRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp EEEEECCT--TCCHHHHHHHHHHTTEECEECCGG---GTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCC--CCCHHHHHHHHHHCCEEEeCCccc---cCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 66788742 467889999999999887543321 12356999997667889998 99999988765
No 29
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.97 E-value=4e-29 Score=250.11 Aligned_cols=332 Identities=14% Similarity=0.117 Sum_probs=244.0
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
|.++++.+.+++.+.+.. ..++.......++++++++++|.+. ..+++|+|+++|+.+++.++.++
T Consensus 9 p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~-----~~i~~~~g~t~a~~~~~~~~~~~---- 74 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFRTEG-----EVLILTGSGTLAMEALVKNLFAP---- 74 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSS-----EEEEEESCHHHHHHHHHHHHCCT----
T ss_pred CCCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhCCCC-----ceEEEcCchHHHHHHHHHhccCC----
Confidence 445678888888776652 1345555667789999999999874 24899999999999998887432
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHH--HHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK 222 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~ 222 (498)
+++|++++++|+++. ..++..|++++.++++++ +.+|+++|++ +++++|++++++||||.+.|++
T Consensus 75 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~ 141 (352)
T 1iug_A 75 ---------GERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG-DTPRPEDVAK---EGYAGLLLVHSETSTGALADLP 141 (352)
T ss_dssp ---------TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCTTTSCC---SSCSEEEEESEETTTTEECCHH
T ss_pred ---------CCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHhc---cCCcEEEEEEecCCcceecCHH
Confidence 468999999999865 555668999999999764 6799988877 6789999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccccc
Q 010897 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302 (498)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~ 302 (498)
+|.++|++++. |+++|+|++|+.+..++ ++...++|+++.++|||++++.|+|+++++++. + +.+..
T Consensus 142 ~i~~l~~~~~~----~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~-~-~~~~~ 208 (352)
T 1iug_A 142 ALARAFKEKNP----EGLVGADMVTSLLVGEV-------ALEAMGVDAAASGSQKGLMCPPGLGFVALSPRA-L-ERLKP 208 (352)
T ss_dssp HHHHHHHHHCT----TCEEEEECTTTBTTBCC-------CSGGGTCSEEEEESSSTTCCCSCEEEEEECHHH-H-HTCCC
T ss_pred HHHHHHHhhCC----CCEEEEECCccccCcce-------eccccCeeEEEecCcccccCCCceeEEEECHHH-H-HHhhC
Confidence 99999999843 79999999997543322 111114789999999999999999999976531 1 11000
Q ss_pred ccCc------cCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEE
Q 010897 303 HINY------LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376 (498)
Q Consensus 303 ~~~y------l~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v 376 (498)
...| +...... ...++.+.....++.+++..+... ++++.++..++++++.+.|+++ +++++.+....+++
T Consensus 209 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 285 (352)
T 1iug_A 209 RGYYLDLARELKAQKEG-ESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVA 285 (352)
T ss_dssp CSSTTCHHHHHHHHTTT-CCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCE
T ss_pred CCceeeHHHHHhhcccC-CCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEE
Confidence 0000 0000000 112444444555566677665544 7888899999999999999998 58877542145688
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.|++++ +.+..++.++|.++|+.+.....+ ....++|++++...+.++++++++.|+++++++
T Consensus 286 ~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 286 AFYLPE--GVPYARVKEAFAQRGAVIAGGQGP---LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp EEECCT--TCCHHHHHHHHHTTTEECEECCGG---GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCC--CCCHHHHHHHHHHCCEEEEeCCCc---cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 888853 467889999999999887644321 234679999988788999999999999998765
No 30
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.97 E-value=1.1e-28 Score=250.63 Aligned_cols=337 Identities=12% Similarity=0.085 Sum_probs=246.5
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
|..+++.+.+++.+.+.. ..++.......++++++++++|.+.+ ..+++|+|+++|+.+++.++.++
T Consensus 31 p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~gg~~al~~~~~~~~~~---- 97 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRMIG-----HMQKEMLQIMEEIKQGIQYVFQTRNP----LTLVVSGSGHCAMETALFNLLEP---- 97 (393)
T ss_dssp CCCCCHHHHHHTTCCCCC-----TTSHHHHHHHHHHHHHHHHHHTCCCS----EEEEESCCTTTHHHHHHHHHCCT----
T ss_pred CCCCCHHHHHHhcccccC-----cccHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCcHHHHHHHHHhcCCC----
Confidence 444567776665442211 12345567778899999999998742 23789999999999888877432
Q ss_pred HHhcCCCCCCcEEEEcCCchh--HHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCH
Q 010897 145 RKEQGKPYDKPNIVTGANVQV--CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV 221 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~--~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l 221 (498)
+++|+++.++|+ .+...++..|++++.++++++ +.+|+++|++++++ ++++|++++++|+||.+.|+
T Consensus 98 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 167 (393)
T 3kgw_A 98 ---------GDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG-EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPL 167 (393)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred ---------CCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccH
Confidence 468999888886 457888899999999999765 68999999999998 89999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccc
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~ 301 (498)
++|.++|+++ |+++++|++|+.+..++ ++...++|+++.++||+++++.|+|+++.+++ .. +.+.
T Consensus 168 ~~i~~l~~~~------~~~li~De~~~~g~~~~-------~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~-~~~~ 232 (393)
T 3kgw_A 168 DGFGELCHRY------QCLLLVDSVASLGGVPI-------YMDQQGIDIMYSSSQKVLNAPPGISLISFNDK-AK-YKVY 232 (393)
T ss_dssp TTHHHHHHHT------TCEEEEECTTTTTTSCC-------CTTTTTCCEEEEESSSTTCCCSSCEEEEECHH-HH-HHHH
T ss_pred HHHHHHHHHc------CCEEEEECCccccCccc-------chhhcCCCEEEecCcccccCCCceeEEEECHH-HH-HHHh
Confidence 9999999999 99999999998443222 12223579999999999999999999997643 11 1110
Q ss_pred c-c----c---------CccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 010897 302 F-H----I---------NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (498)
Q Consensus 302 ~-~----~---------~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (498)
. . . .+.+.........++.+...+.++.+++..+..+++.++.++..++++++.+.|+++ +++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 311 (393)
T 3kgw_A 233 SRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFF 311 (393)
T ss_dssp TCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred ccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 0 0 0 011111111111244555566677777777777788999999999999999999998 47776
Q ss_pred eCCC--C-ccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEee-cCCCCHHHHHHHHHHHHHHHH
Q 010897 368 SKDV--G-VPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 368 ~~~~--~-~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.++. . ..+++|.++. +.+..++.++|.++ |+.+.....+ ....++|+++ ....+.++++++++.|+++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~ 386 (393)
T 3kgw_A 312 VKDPEIRLPTITTVTVPA--GYNWRDIVSYVLDHFSIEISGGLGP---TEERVLRIGLLGYNATTENVDRVAEALREALQ 386 (393)
T ss_dssp SSSGGGBCSSEEEEECCT--TBCHHHHHHHHHHHHCEECBCCCGG---GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred cCChhhcCCeEEEEeCCC--CCCHHHHHHHHHHhCCEEEeCCccc---CCCCEEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 4321 2 3456677743 46788999999988 9887543221 2346799998 545689999999999999987
Q ss_pred HHH
Q 010897 443 EIE 445 (498)
Q Consensus 443 ~l~ 445 (498)
++.
T Consensus 387 ~~~ 389 (393)
T 3kgw_A 387 HCP 389 (393)
T ss_dssp HSC
T ss_pred hhh
Confidence 653
No 31
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=2.3e-28 Score=249.37 Aligned_cols=345 Identities=17% Similarity=0.146 Sum_probs=248.0
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCC--c---chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEY--P---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR 139 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~--~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~ 139 (498)
+.++++.+.+++.+.+......+..+ . .......++++++++++|.+. ...+++|+|+++|+.+++.++++
T Consensus 32 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~----~~~v~~~~g~t~a~~~~~~~~~~ 107 (406)
T 1kmj_A 32 SAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS----AEELVFVRGTTEGINLVANSWGN 107 (406)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC----GGGEEEESSHHHHHHHHHHHTHH
T ss_pred cCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC----CCeEEEeCChhHHHHHHHHHhhh
Confidence 44566788888888876543222211 1 234556678899999999831 12499999999999999988743
Q ss_pred HHHHHHHhcCCCCCCcEEEEcCCchh----HHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCc
Q 010897 140 KWQQKRKEQGKPYDKPNIVTGANVQV----CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT 215 (498)
Q Consensus 140 ~~~~~~~~~g~~~~~~~Iv~s~~~h~----~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~t 215 (498)
.+. ..+++|++++++|. .+...++..|++++.+|++++ +.+|+++|++++++++++|++++++|+|
T Consensus 108 ~~~---------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~v~~~~~~npt 177 (406)
T 1kmj_A 108 SNV---------RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPTLFDEKTRLLAITHVSNVL 177 (406)
T ss_dssp HHC---------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SCBCGGGHHHHCCTTEEEEEEESBCTTT
T ss_pred hcC---------CCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-CCcCHHHHHHHhccCCeEEEEeCCCccc
Confidence 100 01468999999975 455667888999999999764 7899999999999899999999999999
Q ss_pred ccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCC
Q 010897 216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD 295 (498)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~ 295 (498)
|.+.|+++|.++|+++ |+++++|++|+.+..++ ++...+.|+++.+.||.+ ++.|+|+++.++. .
T Consensus 178 G~~~~l~~i~~l~~~~------~~~li~D~~~~~g~~~~-------~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~~-~ 242 (406)
T 1kmj_A 178 GTENPLAEMITLAHQH------GAKVLVDGAQAVMHHPV-------DVQALDCDFYVFSGHKLY-GPTGIGILYVKEA-L 242 (406)
T ss_dssp CCBCCHHHHHHHHHHT------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEEEGGGTT-SCTTCEEEEECHH-H
T ss_pred cCcCCHHHHHHHHHHc------CCEEEEEchhhcCCCCC-------cccccCCCEEEEEchhcc-CCCCcEEEEEeHH-H
Confidence 9999999999999999 99999999998764321 111114789999999977 7888999997632 2
Q ss_pred CCcccccccCccCCC--------------CCCccc-cCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q 010897 296 LPDELVFHINYLGSD--------------QPTFTL-NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360 (498)
Q Consensus 296 l~~~~~~~~~yl~~~--------------~~~~~l-~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 360 (498)
. +.+. ....++. .....+ .++.+...++++.+++..+...++.+..++..++++++.+.|++
T Consensus 243 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 319 (406)
T 1kmj_A 243 L-QEMP--PWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES 319 (406)
T ss_dssp H-HHCC--CSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred H-hhcC--CcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1111 0000100 000111 13444445555556777766667888889999999999999999
Q ss_pred CCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC-----CCCeeEEEEeecCCCCHHHHHHHHH
Q 010897 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN-----AENVAVLRVVVREDFSRSLVERLIS 435 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~-----~~~~~~lRv~v~~~~t~~~~~~l~~ 435 (498)
+++++++.+....++++|.++ +.+..++.+.|.++|+.+........ .....++|++++..+|.++++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~ 396 (406)
T 1kmj_A 320 VPDLTLYGPQNRLGVIAFNLG---KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVT 396 (406)
T ss_dssp STTEEEESCTTCCSEEEEEET---TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHH
T ss_pred CCCeEEecCCCcCCEEEEEEC---CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHH
Confidence 977988754214678888874 25677899999999998754321100 0114679999998889999999999
Q ss_pred HHHHHHHHH
Q 010897 436 HIEEVLKEI 444 (498)
Q Consensus 436 ~l~~~l~~l 444 (498)
.|+++++.+
T Consensus 397 ~l~~~~~~l 405 (406)
T 1kmj_A 397 GLQRIHRLL 405 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988764
No 32
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.97 E-value=1.1e-28 Score=247.75 Aligned_cols=332 Identities=14% Similarity=0.060 Sum_probs=243.5
Q ss_pred CCChHHHHHHHHHHhccCCC-CCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
..+++.+.+.+.+++..... ....++...++.+++++++++++|.+.+ ..+++|+|+++|+.+++.++..
T Consensus 13 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~v~~~~g~t~al~~~~~~l~~----- 83 (362)
T 3ffr_A 13 SELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSN----YEVLFLASATEIWERIIQNCVE----- 83 (362)
T ss_dssp CCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----EEEEEESCHHHHHHHHHHHHCS-----
T ss_pred cCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCchHHHHHHHHhccC-----
Confidence 34566777777776655432 2234667778888999999999998632 3488999999999999888742
Q ss_pred HHhcCCCCCCcEEEEcCCchhH--HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK 222 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~ 222 (498)
+.+++....|++ +...++..|++++.++++++ +.+|+++|+ ++++|++|++++++|+||.+.|++
T Consensus 84 ----------~~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~ 150 (362)
T 3ffr_A 84 ----------KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFG-KGFYPADIT--VPADAEIICLTHNETSSGVSMPVE 150 (362)
T ss_dssp ----------SEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCGGGCC--CCTTCCEEEEESEETTTTEECCHH
T ss_pred ----------CcEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCC-CCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHH
Confidence 255555554544 45577888999999999764 789999998 788899999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccccc
Q 010897 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302 (498)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~ 302 (498)
+|.++|+++| |+++|+|++|+.+..++ + ...+|+++.++||+++++.|+|+++.+++ .+......
T Consensus 151 ~i~~la~~~p-----~~~li~D~a~~~~~~~~-------~--~~~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~~~~~~~ 215 (362)
T 3ffr_A 151 DINTFRDKNK-----DALIFVDAVSSLPYPKF-------D--WTKIDSVFFSVQKCFGLPAGLGVWILNDR-VIEKSKAL 215 (362)
T ss_dssp HHTTSGGGST-----TSEEEEECTTTTTSSCC-------C--TTSCSEEEEETTSTTCCCSCCEEEEEEHH-HHHHHHHH
T ss_pred HHHHHHHhCC-----CCEEEEecccccCCccc-------C--hhHCcEEEEecccccCCCCceEEEEECHH-HHHHhhhc
Confidence 9999999985 79999999998654321 1 12388999999999988999999887652 21111000
Q ss_pred cc-----CccCCC------CCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC
Q 010897 303 HI-----NYLGSD------QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV 371 (498)
Q Consensus 303 ~~-----~yl~~~------~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 371 (498)
.. .+.... .......++.+.....++.+++..+..+++.++.++..++++++.+.|+++++++++.+..
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 295 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDA 295 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCG
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCCh
Confidence 00 000000 0001112455555666777778777777788999999999999999999998899876321
Q ss_pred ---CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 372 ---GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 372 ---~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
...+++|.+++ +..++.+.|.++|+.+.....+ .+..++|++++...+.++++++++.|++++
T Consensus 296 ~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~g~~~---~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 296 KLRSMTTIVANTTM----LPGEINKILEPFDMAVGAGYGS---KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp GGBCSSEEEEEESS----CHHHHHHHHGGGTEEEEECSGG---GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred hhcCCceEEEecCC----CHHHHHHHHHHCCeEEecCccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35677888753 6789999999999987643221 234679999998889999999998887753
No 33
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=2.6e-28 Score=248.38 Aligned_cols=333 Identities=14% Similarity=0.053 Sum_probs=244.7
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+.++++.+.+++.+.+.. .+ .+...++.+++++++++++|.+.+ ..+++|+|+++|+.+++.++.++
T Consensus 42 ~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~----~~v~~t~g~t~al~~~~~~~~~~---- 108 (393)
T 1vjo_A 42 PSNAHPSVLQAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENP----LTIAVSGTGTAAMEATIANAVEP---- 108 (393)
T ss_dssp CCCCCHHHHHHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT----
T ss_pred CCCCCHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCchHHHHHHHHHhccCC----
Confidence 445667788877665543 12 234567888999999999999642 14899999999999999887432
Q ss_pred HHhcCCCCCCcEEEEcCCchhH--HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV 221 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l 221 (498)
+++|++++++|.+ +..+++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus 109 ---------gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l 178 (393)
T 1vjo_A 109 ---------GDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG-EVFSLEELRTALETHRPAILALVHAETSTGARQPL 178 (393)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred ---------CCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC-CCCCHHHHHHHHhhCCceEEEEeccCCCcceeccH
Confidence 4689999999998 99999999999999999874 78999999999998 89999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccc
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~ 301 (498)
++|.++|+++ |+++++|++|+.+..++ ++...+.|+++.++||++++|.|+|+++++++ .+ +.+.
T Consensus 179 ~~i~~l~~~~------~~~li~Dea~~~g~~~~-------~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~-~~~~ 243 (393)
T 1vjo_A 179 EGVGELCREF------GTLLLVDTVTSLGGVPI-------FLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR-AI-EKLQ 243 (393)
T ss_dssp TTHHHHHHHH------TCEEEEECTTTTTTSCC-------CTTTTTCSEEECCSSSTTCSCSSCEEEEECHH-HH-HHHH
T ss_pred HHHHHHHHHc------CCEEEEECCccccCcCC-------cccccCccEEEEcCcccccCCCceEEEEECHH-HH-HHHh
Confidence 9999999999 99999999998432211 22223579999999999988889999998653 11 1110
Q ss_pred -----cccCccCCC-----CCCccccC-CCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC
Q 010897 302 -----FHINYLGSD-----QPTFTLNF-SKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD 370 (498)
Q Consensus 302 -----~~~~yl~~~-----~~~~~l~~-sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 370 (498)
....+.+.. .......+ +.+.....++.++++.+..++++++.++..++++++.+.|+++ +++++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 322 (393)
T 1vjo_A 244 RRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEK 322 (393)
T ss_dssp TCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCG
T ss_pred ccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCc
Confidence 000111000 00001112 4444556666777776656678889999999999999999998 58776542
Q ss_pred C--CccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEee-cCCCCHHHHHHHHHHHHHHH
Q 010897 371 V--GVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 371 ~--~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~~~l~~~l~~~l 441 (498)
. ..++++|+++. +.+..++.++|.++ |+.+.....+ ....++|+++ ....+.++++++++.|++++
T Consensus 323 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~~---~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 323 EYRLPTLTTVCIPD--GVDGKAVARRLLNEHNIEVGGGLGE---LAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp GGBCSSEEEEECCT--TCCHHHHHHHHHHHHCEECEECCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEcCC--CCCHHHHHHHHHhhCCEEEecCccc---cCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 1 23678888742 45778999999988 9887543321 1246799995 34456667999998888765
No 34
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.97 E-value=3.9e-28 Score=247.18 Aligned_cols=336 Identities=13% Similarity=0.102 Sum_probs=242.3
Q ss_pred CCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~ 145 (498)
.++++.+.+++.+.+.. .+ ++.......++++++++++|.+.+ ..+++|+|+++|+.+++.++.++
T Consensus 27 ~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~g~t~al~~~~~~~~~~----- 92 (396)
T 2ch1_A 27 SNCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENR----ATMCVSGSAHAGMEAMLSNLLEE----- 92 (396)
T ss_dssp CCCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCCT-----
T ss_pred CCCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCC----cEEEECCcHHHHHHHHHHHhcCC-----
Confidence 34567777766544432 12 334445566888899999998752 13889999999999988887432
Q ss_pred HhcCCCCCCcEEEEcCCchhHHH--HHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCHH
Q 010897 146 KEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK 222 (498)
Q Consensus 146 ~~~g~~~~~~~Iv~s~~~h~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l~ 222 (498)
+++|++++++|.++. ..++..|++++.++++++ +.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus 93 --------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 163 (396)
T 2ch1_A 93 --------GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD-RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLE 163 (396)
T ss_dssp --------TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred --------CCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCC-CCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHH
Confidence 468999999999885 478889999999999764 78999999999988 899999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccccc
Q 010897 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302 (498)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~ 302 (498)
+|.++|+++ |+++|+|++|+.+..++ ++...++|++..++||+++++.|+|++++++. .+ ..+..
T Consensus 164 ~i~~l~~~~------~~~li~Dea~~~g~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~ 228 (396)
T 2ch1_A 164 GVGQICHQH------DCLLIVDAVASLCGVPF-------YMDKWEIDAVYTGAQKVLGAPPGITPISISPK-AL-DVIRN 228 (396)
T ss_dssp THHHHHHHT------TCEEEEECTTTBTTBCC-------CTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-HH-HHHHT
T ss_pred HHHHHHHHc------CCEEEEEccccccCCcc-------chhhcCcCEEEEcCCccccCCCCeEEEEECHH-HH-Hhhhh
Confidence 999999999 99999999998543221 22222478888999999999999999987642 21 11100
Q ss_pred c---c-C-c---------cCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEee
Q 010897 303 H---I-N-Y---------LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILS 368 (498)
Q Consensus 303 ~---~-~-y---------l~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 368 (498)
. . . + ...........++.+.....++.+++..+..++++++.++..++++++.+.|+++ +++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 307 (396)
T 2ch1_A 229 RRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFV 307 (396)
T ss_dssp CSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSS
T ss_pred ccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeecc
Confidence 0 0 0 0 1110000011244444455666667776666778889999999999999999988 487765
Q ss_pred CCC---CccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q 010897 369 KDV---GVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 369 ~~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+.. ...+++|+++. +.+..++.++|.++ |+.+.....+ ....++|+++ ....+.++++++++.|++++++
T Consensus 308 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 308 KDPRHRLPTVTGIMIPK--GVDWWKVSQYAMNNFSLEVQGGLGP---TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp CSGGGBCTTEEEEECCT--TCCHHHHHHHHHHHHCBCCBCCCGG---GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCceEEEEcCC--CCCHHHHHHHHHHhCCEEEecCccc---cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 431 12378888742 46788999999875 9887543211 2346799999 4566889999999999999876
Q ss_pred HH
Q 010897 444 IE 445 (498)
Q Consensus 444 l~ 445 (498)
+.
T Consensus 383 ~~ 384 (396)
T 2ch1_A 383 TH 384 (396)
T ss_dssp HC
T ss_pred hC
Confidence 53
No 35
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.8e-28 Score=250.57 Aligned_cols=338 Identities=12% Similarity=0.058 Sum_probs=235.2
Q ss_pred CCChHHHHHHHHHHhccCCCCC-cCCc---chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKNYVDM-DEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n~~~~-~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~ 141 (498)
.++++.+.+++.+.+......+ ..++ .......++++++++++|.+. ..+++|+|+++++.+++.++.+.+
T Consensus 36 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~al~~~~~~l~~~~ 110 (406)
T 3cai_A 36 MLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADP-----GGVVLGADRAVLLSLLAEASSSRA 110 (406)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHHHTGGGG
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCChHHHHHHHHHHHhhcc
Confidence 3567788888888876532221 1232 245667789999999999864 248999999999988877652111
Q ss_pred HHHHHhcCCCCCCcEEEEcCCchhHHHHHH----HHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCccc
Q 010897 142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE 217 (498)
Q Consensus 142 ~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~----~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~ 217 (498)
. .+++|+++.++|.++...+ +..|++++.++++++++.+|+++|+++++++|++|++++++|+||.
T Consensus 111 ~----------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~ 180 (406)
T 3cai_A 111 G----------LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGG 180 (406)
T ss_dssp B----------TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCB
T ss_pred C----------CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccc
Confidence 0 1468999999998754443 3379999999998434789999999999989999999999999999
Q ss_pred ccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeE-EEEEeCCCCC
Q 010897 218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG-WVVWRTKDDL 296 (498)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g-~~~~~~~~~l 296 (498)
+.|+++|.++|+++ |+++|+|++|+.+..++ ++...++|+++.|+||+++ |. +| ++++++. ..
T Consensus 181 ~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~~-------~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~-~~ 244 (406)
T 3cai_A 181 VTDLRAMTKLVHDV------GALVVVDHSAAAPYRLL-------DIRETDADVVTVNAHAWGG-PP-IGAMVFRDPS-VM 244 (406)
T ss_dssp BCCCHHHHHHHHHT------TCEEEEECTTTTTTCCC-------CHHHHCCSEEEEEGGGGTS-CS-CEEEEESCHH-HH
T ss_pred cCCHHHHHHHHHHc------CCEEEEEcccccCCCCC-------CchhcCCCEEEeehhhhcC-CC-cCeEEEEehH-HH
Confidence 99999999999999 99999999998543221 1111147899999999864 44 88 8876542 11
Q ss_pred CcccccccCccCCCCC-CccccCCCchHHHHHHHHHHHHhcHH--------------HHHHHHHHHHHHHHHHHHHHhcC
Q 010897 297 PDELVFHINYLGSDQP-TFTLNFSKGSSQIIAQYYQFIRLGFE--------------GYKNIMENCMGNARALREGLEKT 361 (498)
Q Consensus 297 ~~~~~~~~~yl~~~~~-~~~l~~sr~~~~~~a~~~~l~~lg~~--------------g~~~~~~~~~~~a~~l~~~L~~~ 361 (498)
..+.....+.+.... .+. .++.+.....++.+++..+... .++++.++..++++++.+.|+++
T Consensus 245 -~~l~~~~~~~~~~~~~~~~-~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 245 -NSFGSVSTNPYATGPARLE-IGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp -HTSCCCCSCTTCCGGGGGC-CSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -hhcCCcccCCCCCcccccc-CCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 111110001111100 111 2444444555555566544321 46788888899999999999999
Q ss_pred CCeEEeeCC-CCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCC------CCCCCeeEEEEeecCCCCHHHHHHHH
Q 010897 362 GRFEILSKD-VGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMP------ANAENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 362 ~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~------~~~~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
++++++.+. ...++++|.+++ .+..++.+.|.++|+.+.....+ ....+..++|++++..++.+++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~ 399 (406)
T 3cai_A 323 PLVMLIGRPEAQIPVVSFAVHK---VPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLV 399 (406)
T ss_dssp TTEEECCCCSSBCSEEEEEETT---BCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHH
T ss_pred CCeEEcCCccccCCEEEEEECC---cCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHH
Confidence 888887543 135688888853 56789999999999887643200 00012467999998888899998888
Q ss_pred HHHHH
Q 010897 435 SHIEE 439 (498)
Q Consensus 435 ~~l~~ 439 (498)
+.|++
T Consensus 400 ~~l~~ 404 (406)
T 3cai_A 400 RALAS 404 (406)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77764
No 36
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.96 E-value=5.9e-28 Score=245.34 Aligned_cols=336 Identities=14% Similarity=0.052 Sum_probs=242.5
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
+++|.+.+++.+.+......|... ..++++++.+++++.+|.+.+. ..+++|+|+++|+.+++.++.++
T Consensus 40 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~i~~~~g~~~a~~~~~~~l~~~------ 108 (391)
T 3dzz_A 40 KIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKE---DWCVFASGVVPAISAMVRQFTSP------ 108 (391)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCG---GGEEEESCHHHHHHHHHHHHSCT------
T ss_pred CCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCH---HHEEECCCHHHHHHHHHHHhCCC------
Confidence 456889999998887654444332 5788899999999999965432 34899999999999988887432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec--CCccccCHHHHHHHhh-hCCeEEEEeeccCCcccc---cC
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEF---ED 220 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~--~~~~~~d~~~L~~~i~-~~t~~v~~~~~~t~tG~~---~~ 220 (498)
+++|+++.++|.++...++..|++++.+|++ ++++.+|+++|+++++ +++++|++++++||||.+ ++
T Consensus 109 -------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~ 181 (391)
T 3dzz_A 109 -------GDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEE 181 (391)
T ss_dssp -------TCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHH
T ss_pred -------CCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHH
Confidence 4689999999999999999999999999985 5557799999999998 689999999999999999 88
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--cccCC--CCeeEEEEcCCccCC-CCCCeEEEEEeCCCC
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRL--PLVKSINVSGHKYGL-VYAGVGWVVWRTKDD 295 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~~~--~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~ 295 (498)
+++|.++|+++ |+++|+|++|+++.. ...... ..+.. +..+++..+.||+++ ++.++|+++.++++.
T Consensus 182 l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 253 (391)
T 3dzz_A 182 VKRIAELCAKH------QVLLISDEIHGDLVL--TDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDL 253 (391)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTTCBC--SSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHH
T ss_pred HHHHHHHHHHC------CCEEEEecccccccC--CCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHH
Confidence 99999999999 999999999988652 111111 01111 223488899999874 777899998764432
Q ss_pred CCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeeCCCCcc
Q 010897 296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGRFEILSKDVGVP 374 (498)
Q Consensus 296 l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~ 374 (498)
. +.+........ . ++.+.....+..+++.. +.+.+++..++..++++++.+.|++ ++++++..+. ...
T Consensus 254 ~-~~~~~~~~~~~----~----~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~ 322 (391)
T 3dzz_A 254 R-ARAEESFFLAG----I----GEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSN-ASY 322 (391)
T ss_dssp H-HHHHHHHHHHT----C----SSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCC-BSS
T ss_pred H-HHHHHHHHhhc----c----CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccC-ceE
Confidence 2 11111000000 0 11222344444445543 4555788888899999999999998 7889887543 333
Q ss_pred EEEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 375 LVAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
++.+.++. .+.+..++.++|. ++|+.+....... ..+..++|++++ .+.++++++++.|++++++
T Consensus 323 ~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 323 LAWVDISA-LGMNAEDFCKYLREKTGLIISAGNGYR-GNGHEFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp EEEEECGG-GCSCHHHHHHHHHHHHCEECEESGGGC-TTGGGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred EEEEehhh-cCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 44456642 2357889999995 8999876432111 134578999987 5888999888888888764
No 37
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=4.8e-28 Score=244.78 Aligned_cols=334 Identities=12% Similarity=0.106 Sum_probs=239.6
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
|.++++.+.+++.+.+.. ..++....+.+++++++++++|.+.+. ....+|+|+++|+.+++.++.++
T Consensus 27 p~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~---~~i~~~~ggt~al~~~~~~~~~~---- 94 (376)
T 3f0h_A 27 PVMSSEEVRAIGAEQVPY-----FRTTEFSSTMLENEKFMLEYAKAPEGS---KAVFMTCSSTGSMEAVVMNCFTK---- 94 (376)
T ss_dssp SCCCCHHHHHHHTSCCCC-----CSSHHHHHHHHHHHHHHHHHHTCCTTC---EEEEESSCHHHHHHHHHHHHCCT----
T ss_pred CCCCcHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCChhHHHHHHHHhccCC----
Confidence 344567777776554322 124556677788999999999997531 23455889999999988877432
Q ss_pred HHhcCCCCCCcEEEEcCCchhHH--HHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK 222 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~ 222 (498)
+++|+++++.++.. ...+...|++++.++++++ +.+|+++|+++++++|++|++++++|+||.+.|++
T Consensus 95 ---------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~ 164 (376)
T 3f0h_A 95 ---------KDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHG-KKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTM 164 (376)
T ss_dssp ---------TCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCTT-CCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHH
T ss_pred ---------CCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHhhccCceEEEEecccCCcceecCHH
Confidence 46788887655543 3457778999999999764 78999999999988999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccccc
Q 010897 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302 (498)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~ 302 (498)
+|.++|+++ |+++|+|++++.+..++ ++...++|+++.++||+++++.|+|+++.+++ .+ +.+..
T Consensus 165 ~i~~l~~~~------~~~li~D~~~~~~~~~~-------~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~-~~~~~ 229 (376)
T 3f0h_A 165 MIGEFCKKN------NMFFVCDCVSAFLADPF-------NMNECGADVMITGSQKVLACPPGISVIVLAPR-GV-ERVEK 229 (376)
T ss_dssp HHHHHHHHT------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEEETTTTTCCCSSCEEEEECHH-HH-HHHHT
T ss_pred HHHHHHHHc------CCEEEEEcCccccCccc-------cccccCccEEEecCcccccCCCceEEEEECHH-HH-HHhhc
Confidence 999999999 99999999998765322 11112478999999999988999999876542 11 11110
Q ss_pred --ccC-ccCCC-----CCCccccCCCchHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCc
Q 010897 303 --HIN-YLGSD-----QPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRFEILSKDVGV 373 (498)
Q Consensus 303 --~~~-yl~~~-----~~~~~l~~sr~~~~~~a~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 373 (498)
... |+... .......++.+...+.++.+++..+..+ +++++.++..++++++.+.|++++ +++..+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~ 308 (376)
T 3f0h_A 230 SKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-FELVSESPAN 308 (376)
T ss_dssp CCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBBT
T ss_pred CCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-CccCccccCc
Confidence 001 11000 0000011233333446677777777666 688999999999999999999986 8877543233
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 374 PLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 374 ~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.++.+.. .+.+..++.++|.++ |+.+.....+ ....++|+++...+|.++++++++.|+++++
T Consensus 309 ~~~~~~~---~~~~~~~l~~~l~~~~gi~v~~g~~~---~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 309 GVTSVHP---TTANAYDIFLKLKDEYGIWICPNGGE---MKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp TEEEEEE---SSSCHHHHHHHHHHHSSEECEECCGG---GTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEeC---CCCCHHHHHHHHHHhCCEEEecCccc---cCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 4555543 246788999999998 9887543211 2345799999888899999999999998875
No 38
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=2.7e-28 Score=245.15 Aligned_cols=335 Identities=13% Similarity=0.078 Sum_probs=236.7
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchH-HHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTT-ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~-~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~ 143 (498)
|..++|.+.+++.+.+. + .++... ....++++++++++|.+.+ ...+++|+|+++|+.+++.++.++
T Consensus 12 p~~~~~~v~~a~~~~~~----~--~~~~~~~~~~~~l~~~la~~~g~~~~---~~~v~~~~g~t~a~~~~~~~~~~~--- 79 (366)
T 1m32_A 12 PLTTSRTVKEAMLFDSC----T--WDDDYNIGVVEQIRQQLTALATASEG---YTSVLLQGSGSYAVEAVLGSALGP--- 79 (366)
T ss_dssp SCCCCHHHHHTTCCCCC----T--TSHHHHTTTHHHHHHHHHHHHCSSSS---EEEEEEESCHHHHHHHHHHHSCCT---
T ss_pred CcCCCHHHHHHHhhhhc----C--CCHHHHHHHHHHHHHHHHHHhCCCCc---CcEEEEecChHHHHHHHHHHhcCC---
Confidence 34466777777655332 1 122222 4455777889999994321 124899999999999998887432
Q ss_pred HHHhcCCCCCCcEEE-EcCCchhH-HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh--CCeEEEEeeccCCccccc
Q 010897 144 KRKEQGKPYDKPNIV-TGANVQVC-WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--NTICVAAILGSTLTGEFE 219 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv-~s~~~h~~-~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~--~t~~v~~~~~~t~tG~~~ 219 (498)
+++|+ .+.++|.+ +..+++..|++++.++++++ +.+|+++|++++++ ++++|++++++||||.+.
T Consensus 80 ----------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~ 148 (366)
T 1m32_A 80 ----------QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV-ARPDVQAIDAILNADPTISHIAMVHSETTTGMLN 148 (366)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC
T ss_pred ----------CCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhcCCCeEEEEEecccCCcceec
Confidence 34554 55688875 67788889999999999764 78999999999987 478899999999999999
Q ss_pred CHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcc
Q 010897 220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299 (498)
Q Consensus 220 ~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~ 299 (498)
|+++|.++|+++ |+++|+|++|+.+..++ ++...+.|+++.++||+++++.|+|+++.++. .. +.
T Consensus 149 ~l~~i~~l~~~~------~~~li~Dea~~~~~~~~-------~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~-~~-~~ 213 (366)
T 1m32_A 149 PIDEVGALAHRY------GKTYIVDAMSSFGGIPM-------DIAALHIDYLISSANKCIQGVPGFAFVIAREQ-KL-AA 213 (366)
T ss_dssp CHHHHHHHHHHH------TCEEEEECTTTTTTSCC-------CTTTTTCSEEEEESSSTTCCCSSEEEEEEEHH-HH-TT
T ss_pred CHHHHHHHHHHc------CCEEEEECCccccCcCc-------cccccCccEEEecCcccccCCCceEEEEECHH-HH-Hh
Confidence 999999999999 99999999998654322 12112478999999999988999999998753 11 11
Q ss_pred cccc-cCccCCC--------CCCccccCCCchHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeeC
Q 010897 300 LVFH-INYLGSD--------QPTFTLNFSKGSSQIIAQYYQFIRLGFEG-YKNIMENCMGNARALREGLEKTGRFEILSK 369 (498)
Q Consensus 300 ~~~~-~~yl~~~--------~~~~~l~~sr~~~~~~a~~~~l~~lg~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (498)
+... ..|.... +......++.+...+.++.+++..+...| +.++.++..++++++.+.|+++ +++++.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 292 (366)
T 1m32_A 214 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLD 292 (366)
T ss_dssp CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred hcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccC
Confidence 1100 0111000 00000013444455566777777766666 7888999999999999999998 4776644
Q ss_pred C-CCcc-EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 370 D-VGVP-LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 370 ~-~~~~-~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
+ ...+ ++.|++++..+.+..++.+.|.++|+.+..... .+..++|++++...+.++++++++.|+++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~----~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 293 DELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKV----SQSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp GGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCC----SSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred chhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcC----CCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 2 1244 788887531135778999999999988754321 1356799999888889999999999887764
No 39
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.96 E-value=2.8e-28 Score=248.61 Aligned_cols=341 Identities=17% Similarity=0.087 Sum_probs=226.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCc----CCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKNYVDMD----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n~~~~~----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~ 141 (498)
.++++.+.+++.+.+.....++. ......++.+++++++++++|.+. ..+++|+|+++|+.+++.++....
T Consensus 30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~g~t~al~~~~~~l~~~~ 104 (400)
T 3vax_A 30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEP-----DELIFTSGATESNNIALLGLAPYG 104 (400)
T ss_dssp SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCG-----GGEEEESCHHHHHHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCC-----CcEEEeCCHHHHHHHHHHHHHHhh
Confidence 35667888888877754222111 112345667789999999999874 249999999999999998876211
Q ss_pred HHHHHhcCCCCCCc-EEEEcCCchhHHHHHHHH---cCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCccc
Q 010897 142 QQKRKEQGKPYDKP-NIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE 217 (498)
Q Consensus 142 ~~~~~~~g~~~~~~-~Iv~s~~~h~~~~~~~~~---~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~ 217 (498)
.. . ++ +|+++.+.|.++...+.. .|++++.+|++++ +.+|+++|+++++++|++|++++++||||.
T Consensus 105 -~~---~-----gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~ 174 (400)
T 3vax_A 105 -ER---T-----GRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPS-GRISVEGVMERLRPDTLLVSLMHVNNETGV 174 (400)
T ss_dssp -HH---H-----TCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTT-CCCCHHHHHTTCCTTEEEEECCSBCTTTCB
T ss_pred -cc---C-----CCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCC-CCcCHHHHHHhcCCCceEEEEECCCCCcee
Confidence 11 1 46 899999999988776665 5999999999874 889999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEE-EeCCCCC
Q 010897 218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV-WRTKDDL 296 (498)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~-~~~~~~l 296 (498)
+.|+++|.++|+++ |+++++|++|+.+..++ ++... +|+++.++||+ +++.|+|+++ ++++...
T Consensus 175 ~~~l~~i~~la~~~------~~~li~D~a~~~~~~~~-------~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~ 239 (400)
T 3vax_A 175 IQPVAELAQQLRAT------PTYLHVDAAQGYGKVPG-------DLTTP-IDMISISGHKI-GAPKGVGALVTRRREEMD 239 (400)
T ss_dssp BCCHHHHHHHHTTS------SCEEEEECTTTTTTSGG-------GGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSST
T ss_pred eCcHHHHHHHHHhc------CCEEEEEhhhhcCCCCc-------Chhhc-CcEEEEeHHHh-CCCCceEEEEEecchhcc
Confidence 99999999999999 99999999998654322 22222 78999999994 5688999999 8874322
Q ss_pred CcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--Ccc
Q 010897 297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVP 374 (498)
Q Consensus 297 ~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~ 374 (498)
.........+.+.........++.+...+.++.+++..+ .++++++.++..++++++.+.|+ .+++++..++. ..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~ 317 (400)
T 3vax_A 240 DERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPH 317 (400)
T ss_dssp TCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTT
T ss_pred ccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCC
Confidence 100011111111111110112344444555555566544 34678889999999999999999 78898876542 236
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCcEeeeec--CCC----------CCCC----eeEEEEee-cCCCCHHHHHHHHHHH
Q 010897 375 LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYT--MPA----------NAEN----VAVLRVVV-REDFSRSLVERLISHI 437 (498)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~--~~~----------~~~~----~~~lRv~v-~~~~t~~~~~~l~~~l 437 (498)
++.|.+++ .+..++.+.|. +|+.+.... .+. .... ..++|+++ +...+.++++++++.|
T Consensus 318 ~~~~~~~~---~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l 393 (400)
T 3vax_A 318 ILNLSFED---VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGV 393 (400)
T ss_dssp EEEEECTT---CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------
T ss_pred EEEEEeCC---CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHH
Confidence 88888753 57789999999 998664311 000 0001 36899999 8888899999999998
Q ss_pred HHHHH
Q 010897 438 EEVLK 442 (498)
Q Consensus 438 ~~~l~ 442 (498)
+++++
T Consensus 394 ~~~~~ 398 (400)
T 3vax_A 394 AKLKP 398 (400)
T ss_dssp -----
T ss_pred HHHhc
Confidence 88765
No 40
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.96 E-value=1.3e-28 Score=256.65 Aligned_cols=312 Identities=10% Similarity=-0.015 Sum_probs=233.5
Q ss_pred cchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhH----
Q 010897 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC---- 166 (498)
Q Consensus 91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~---- 166 (498)
+....+.+++++++++++|++. ..+++|+|+++++.+++.++.++ | ..+++|+++.++|.+
T Consensus 107 ~~~~~~~~~l~~~la~~~g~~~-----~~v~~t~g~t~al~~~~~~~~~~--------~--~~~~~Vl~~~~~~~s~~~~ 171 (465)
T 3e9k_A 107 RPWITGDESIVGLMKDIVGANE-----KEIALMNALTVNLHLLMLSFFKP--------T--PKRYKILLEAKAFPSDHYA 171 (465)
T ss_dssp SCGGGTTHHHHGGGHHHHTCCG-----GGEEECSCHHHHHHHHHHHHCCC--------C--SSSCEEEEETTCCHHHHHH
T ss_pred ccHHHhHHHHHHHHHHHcCCCc-----CCEEEECCHHHHHHHHHHHhccc--------c--CCCCEEEEcCCcCCchHHH
Confidence 3444566678899999999975 24999999999999988887432 1 124579999999987
Q ss_pred HHHHHHHcCCeeE-----EEEecCCccccCHHHHHHHhh---hCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCC
Q 010897 167 WEKFARYFEVELK-----EVKLEEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238 (498)
Q Consensus 167 ~~~~~~~~g~~~~-----~v~~~~~~~~~d~~~L~~~i~---~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~ 238 (498)
+...++..|++++ .+|.++ ++.+|+++|+++|+ +++++|++++++|+||.+.|+++|.++|+++ |
T Consensus 172 ~~~~~~~~G~~~~~~~v~~~~~~~-~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~------g 244 (465)
T 3e9k_A 172 IESQLQLHGLNIEESMRMIKPREG-EETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAK------G 244 (465)
T ss_dssp HHHHHHHTTCCHHHHEEEECCCTT-CSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHT------T
T ss_pred HHHHHHHcCCcceeeeEEEecCCC-CCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHc------C
Confidence 5557788898852 234433 48899999999997 5789999999999999999999999999999 9
Q ss_pred ceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccccCccCCC-------
Q 010897 239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSD------- 310 (498)
Q Consensus 239 ~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~------- 310 (498)
+++|+|+||+.+..++ ++...++|++++++||+++ +|.|+|+++++++ ...........|.++.
T Consensus 245 ~~vi~D~a~~~g~~~~-------~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 316 (465)
T 3e9k_A 245 CYVGFDLAHAVGNVEL-------YLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK-HAHTIKPALVGWFGHELSTRFKM 316 (465)
T ss_dssp CEEEEECTTTTTTSCC-------CHHHHTCCEEEECSSSTTCCCTTCCCEEEECGG-GTTTSCCSSCCGGGBCHHHHTTC
T ss_pred CEEEEEhhhhcCCcCC-------chhhcCCCEEEECcccccccCCCceEEEEEcHH-HHhhcCCcccCccCCCCCccccc
Confidence 9999999998765432 1211258999999999995 6777899988653 2211111111111110
Q ss_pred CCCcc--------ccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----------CCeEEeeCCC-
Q 010897 311 QPTFT--------LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----------GRFEILSKDV- 371 (498)
Q Consensus 311 ~~~~~--------l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----------~~~~~~~~~~- 371 (498)
...+. ..++.+...++++.+++..+...+++++.++..++++++.+.|+++ ++++++.+..
T Consensus 317 ~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~ 396 (465)
T 3e9k_A 317 DNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV 396 (465)
T ss_dssp CSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG
T ss_pred CCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH
Confidence 00000 1246666778889999998888889999999999999999999985 6799886532
Q ss_pred --CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee-cCCCCHHHHHHHHHHHHHHHHH
Q 010897 372 --GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 372 --~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v-~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
..++++|+++. +..++.++|.++|+++.. ....++|+++ ...+|.++++++++.|+++++.
T Consensus 397 ~~~g~~~~~~~~~----~~~~l~~~L~~~Gi~v~~-------~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 397 EERGCQLTITFSV----PNKDVFQELEKRGVVCDK-------RNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp GGBCSCEEEEECC----TTCCHHHHHHTTTEECEE-------ETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred hhcccEEEEEecC----CHHHHHHHHHHCCEEEec-------CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 36789998852 345799999999988652 2235799998 6788999999999999988764
No 41
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.96 E-value=3.6e-27 Score=243.44 Aligned_cols=368 Identities=12% Similarity=0.022 Sum_probs=256.1
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccccC-CChHHHHHHHHHHhccCC-CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCC
Q 010897 39 KEAAYQVINDELMLDGNPRLNLASFVTT-WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDK 116 (498)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~ 116 (498)
...++.........+++..+++.+..+. ++++.+.+++.+.+.... ..|....+..++++.+.+++.+.+|++.+.
T Consensus 28 ~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-- 105 (437)
T 3g0t_A 28 IRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPA-- 105 (437)
T ss_dssp HHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--
T ss_pred HHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCc--
Confidence 4555554443322334444555554443 346888888888887543 444444556789999999998888876432
Q ss_pred CcceeeecChhHHHHHHHHHHH--HHHHHHHHhcCCCCCCc--EEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCH
Q 010897 117 TAVGVGTVGSSEAIMLAGLAFK--RKWQQKRKEQGKPYDKP--NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNP 192 (498)
Q Consensus 117 ~~~~~~t~g~sea~~la~~a~~--~~~~~~~~~~g~~~~~~--~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~ 192 (498)
..+++|+|+++++.+++.++. ++ ++ +|+++.++|..+..+++..|++++.++++++++.+|+
T Consensus 106 -~~i~~t~g~t~al~~~~~~l~~~~~-------------gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~ 171 (437)
T 3g0t_A 106 -RACVPTVGSMQGCFVSFLVANRTHK-------------NREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLR 171 (437)
T ss_dssp -GGEEEESHHHHHHHHHHHHHTTSCT-------------TCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHH
T ss_pred -ccEEEeCCHHHHHHHHHHHHhcCCC-------------CCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCH
Confidence 349999999999999988874 32 35 8999999999999999999999999999765678999
Q ss_pred HHHHHHh-hhCCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc-------c
Q 010897 193 VKAVELV-DENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-------W 261 (498)
Q Consensus 193 ~~L~~~i-~~~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~-------~ 261 (498)
++|++++ ++++++|++++|+||||.+.| +++|.++|+++ |+++|+|++|+++... ..... .
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~ 243 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH------DVIVIEDLAYFGMDFR--KDYSHPGEPLYQP 243 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCCTT--SCCCSTTSSCCCC
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchhhcccC--CCcCcccccchhh
Confidence 9999999 778999999999999999976 77789999999 9999999999876532 11000 1
Q ss_pred cc-CCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCccc-ccccCc---------cCCCCCCccccCCCchHHHHHHH
Q 010897 262 DF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDEL-VFHINY---------LGSDQPTFTLNFSKGSSQIIAQY 329 (498)
Q Consensus 262 ~~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~-~~~~~y---------l~~~~~~~~l~~sr~~~~~~a~~ 329 (498)
.+ .....+++..+.||+++ ++.++|+++.+++ .+...+ .+...+ +... .....++. ..+.++
T Consensus 244 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~ 317 (437)
T 3g0t_A 244 SVANYTDNYILALSSSKAFSYAGQRIGVLMISGK-LYEREYPDLEESFGRLRFGEALSSSA--LYALSSGA---THSAQW 317 (437)
T ss_dssp CGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHH-HHHCBCGGGHHHHSCSBHHHHHHTTH--HHHHHSSS---CHHHHH
T ss_pred ccCCCCCcEEEEEcCccCCCCccceeEEEEECHH-HhhhhhhcccccccccchhHHHHHHH--HhhhcCCC---CHHHHH
Confidence 22 22456788889999886 6778999987532 211010 000000 1100 00001222 223344
Q ss_pred HHHHHhcHHH-----HHHHHHHHHHHHHHHHHHHhcCCCeEEe------eCCCCccEEEEEecCCCCCCHHHHHHHHHhc
Q 010897 330 YQFIRLGFEG-----YKNIMENCMGNARALREGLEKTGRFEIL------SKDVGVPLVAFSLKDSSAHTVFEISEGLRKF 398 (498)
Q Consensus 330 ~~l~~lg~~g-----~~~~~~~~~~~a~~l~~~L~~~~~~~~~------~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~ 398 (498)
++...+.... +.+..++..++++++.+.|+++ ++++. .++....++.+.++ +.+..++.++|.++
T Consensus 318 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~ 393 (437)
T 3g0t_A 318 GMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYK---GMDSSKLIEKFVRY 393 (437)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEET---TCCHHHHHHHHHHT
T ss_pred HHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecC---CCCHHHHHHHHHHc
Confidence 4444443322 7788889999999999999999 58887 33225677778885 46788999999999
Q ss_pred CcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 399 GWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 399 G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
|+.+........ ....++|++++. .+.++++++++.|+++++
T Consensus 394 gi~v~~~~~~~~-~~~~~iRis~~~-~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 394 GMCAITLKTTGS-KRNEAMRICTSL-LPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp TEECEESTTTTC-CCTTCEEEECSS-SCGGGHHHHHHHHHHHHH
T ss_pred CeEEeeccccCC-CCCCEEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 998765432221 222569999974 489999999999988765
No 42
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.96 E-value=4.9e-27 Score=242.11 Aligned_cols=340 Identities=14% Similarity=0.065 Sum_probs=241.8
Q ss_pred ccccccc-C-CChHHHHHHHHHHhccCCCCCcC---CcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHH
Q 010897 59 NLASFVT-T-WMEPECDKLVMASINKNYVDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (498)
Q Consensus 59 ~~~~~~~-~-~~~~~~~~~l~~~~~~n~~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la 133 (498)
++.+..+ . .++|.+.+++.+.+......+.. ..+......++++++++++|.+. .+++++|++|++.+
T Consensus 68 d~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~a~~~a 140 (427)
T 2w8t_A 68 LLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTG-------AIVFSTGYMANLGI 140 (427)
T ss_dssp ECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHH
T ss_pred EEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCc-------eEEecCcHHHHHHH
Confidence 4444432 2 35678888888877652211211 12344666778888999999853 67778888899888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh----CCeEEEEe
Q 010897 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAI 209 (498)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~----~t~~v~~~ 209 (498)
+.++..+ ++.|+++.+.|.++...++..|++++.++. +|+++|++++++ ++++|+++
T Consensus 141 l~~l~~~-------------gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~~~~v~~~ 201 (427)
T 2w8t_A 141 ISTLAGK-------------GEYVILDADSHASIYDGCQQGNAEIVRFRH------NSVEDLDKRLGRLPKEPAKLVVLE 201 (427)
T ss_dssp HHHHSCT-------------TCEEEEETTCCHHHHHHHHHSCSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred HHHhcCC-------------CCEEEECCcccHHHHHHHHHcCCeeEEeCC------CCHHHHHHHHHhccCCCCeEEEEc
Confidence 7775322 468999999999999999999998887762 689999999986 78999999
Q ss_pred eccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccC-CCCeeEEEEcCCccCCCCCCeEEE
Q 010897 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWV 288 (498)
Q Consensus 210 ~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~-~~~~dsi~~s~hK~l~~p~g~g~~ 288 (498)
.++|++|.+.|+++|.++|+++ |+++++|++|+++..+.........++ .+++|++..+.||+++ +.| |++
T Consensus 202 ~~~n~tG~~~~l~~l~~l~~~~------g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~g-G~v 273 (427)
T 2w8t_A 202 GVYSMLGDIAPLKEMVAVAKKH------GAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVG-GFV 273 (427)
T ss_dssp SEETTTTEECCHHHHHHHHHHT------TCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCC-EEE
T ss_pred CCCCCCCCccCHHHHHHHHHHc------CCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCC-CEE
Confidence 9999999999999999999999 999999999998753210011110122 2468999999999986 556 888
Q ss_pred EEeCCCCCCcccccc-cCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 010897 289 VWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (498)
Q Consensus 289 ~~~~~~~l~~~~~~~-~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (498)
+.+. +.. +.+... ..|. ..++.+...+.+..++++.+.. +.++.++..+++++|.+.|++++ +++.
T Consensus 274 ~~~~-~l~-~~l~~~~~~~~--------~~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~ 340 (427)
T 2w8t_A 274 VSNH-PKF-EAVRLACRPYI--------FTASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAMG-FRLG 340 (427)
T ss_dssp EECC-TTG-GGGGGTCHHHH--------SSCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHT-CEES
T ss_pred EeCH-HHH-HHHHHhccccc--------ccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcC-Cccc
Confidence 7653 332 222111 1111 1133334455555566665432 46778888899999999999884 8876
Q ss_pred eCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHcC
Q 010897 368 SKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESL 447 (498)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~~ 447 (498)
.++...+++.+.+++ ..+..++.++|.++|+.+.....+....+..++|++++..++.++++++++.|+++++++.+.
T Consensus 341 ~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 418 (427)
T 2w8t_A 341 TETCDSAIVAVMLED--QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGVI 418 (427)
T ss_dssp CSSCCSSEEEEEESS--HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCEEEEEECC--HHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 333145788888843 235678999999999988765544333456789999998889999999999999998765443
No 43
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=3.8e-28 Score=244.96 Aligned_cols=328 Identities=14% Similarity=0.112 Sum_probs=232.3
Q ss_pred CChHHHHHHHHHHhccCC---C--CCcCCcchHHHHHHHHHH-HHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNY---V--DMDEYPVTTELQNRCVNM-IAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~---~--~~~~~~~~~~le~~~~~~-la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~ 140 (498)
++++.+.+++.+.+.... . .+...........+++++ +++++|.+ .+++|+|+++|+.+++.++.++
T Consensus 20 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-------~v~~~~g~t~a~~~~~~~~~~~ 92 (371)
T 2e7j_A 20 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-------VARVTNGAREAKFAVMHSLAKK 92 (371)
T ss_dssp CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-------EEEEESSHHHHHHHHHHHHCCT
T ss_pred CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-------EEEEeCChHHHHHHHHHHHhCC
Confidence 456788888887775431 0 011111223344578888 99999986 2999999999999999887432
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEE--ecCCccccCHHHHHHHhh-----hCCeEEEEeeccC
Q 010897 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK--LEEGYYVMNPVKAVELVD-----ENTICVAAILGST 213 (498)
Q Consensus 141 ~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~--~~~~~~~~d~~~L~~~i~-----~~t~~v~~~~~~t 213 (498)
+++|++++++|.++...++..|++++.++ ++++ +.+|+++|+++++ +++++|++++++|
T Consensus 93 -------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~n 158 (371)
T 2e7j_A 93 -------------DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD-YAITPENFAQTIEETKKRGEVVLALITYPDG 158 (371)
T ss_dssp -------------TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT-CCCCHHHHHHHHHHHTTTSCEEEEEEESSCT
T ss_pred -------------CCEEEEccCcchHHHHHHHHcCCeEEEeecccCCC-CCcCHHHHHHHHHhhcccCCeEEEEEECCCC
Confidence 46899999999999999999999999999 7664 7899999999998 6889999999999
Q ss_pred CcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCC
Q 010897 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 293 (498)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~ 293 (498)
|||.+.|+++|.++|+++ |+++|+|++|+.+..++ ++...+.|+++.|+||+++++.++|+++.+++
T Consensus 159 ptG~~~~~~~i~~~~~~~------~~~li~D~a~~~~~~~~-------~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~ 225 (371)
T 2e7j_A 159 NYGNLPDVKKIAKVCSEY------DVPLLVNGAYAIGRMPV-------SLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 225 (371)
T ss_dssp TTCCCCCHHHHHHHHHTT------TCCEEEECTTTBTTBCC-------CHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred CCcccCCHHHHHHHHHHc------CCeEEEECccccCCCCC-------ChhhcCCCEEEecCCcCCCCCCCcEEEEEech
Confidence 999999999999999999 99999999999875321 11111368999999999988889999998764
Q ss_pred CCCCc-ccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHH--HHHHHHHHHHHhcCCCeEEeeCC
Q 010897 294 DDLPD-ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENC--MGNARALREGLEKTGRFEILSKD 370 (498)
Q Consensus 294 ~~l~~-~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~--~~~a~~l~~~L~~~~~~~~~~~~ 370 (498)
.+.. .......+... ..+. .++.+.....++.++++.+.. +..++. .++++++.+.|+++ +++++.++
T Consensus 226 -~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 296 (371)
T 2e7j_A 226 -WAEIVLRRSEKYKNKE--VELL-GCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDN 296 (371)
T ss_dssp -TTTTTTCBCSSCTTSB--GGGT-TCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSS
T ss_pred -hhhhhccccccCcccc--cccc-cCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCC
Confidence 2211 11111111110 0000 133333445555556655433 556667 78999999999988 58887543
Q ss_pred C-CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC---CCCeeEEE-EeecCC-CCHHHHHHHHHHHHHHHHH
Q 010897 371 V-GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN---AENVAVLR-VVVRED-FSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 371 ~-~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~---~~~~~~lR-v~v~~~-~t~~~~~~l~~~l~~~l~~ 443 (498)
. ..++++|+++ +..++.+.|.++|+.+.. ..... .....++| ++++.. .+.++++++++.|++++++
T Consensus 297 ~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 297 PHNHDLMFFHAE-----VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp SCCSSEEEEECH-----HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCceEEEECC-----CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 1 3678888874 467899999999987643 11100 11145699 999876 7999999999999988764
No 44
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.96 E-value=1.8e-27 Score=241.76 Aligned_cols=346 Identities=11% Similarity=0.011 Sum_probs=241.4
Q ss_pred CCCCCcccccccC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHH
Q 010897 54 GNPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (498)
Q Consensus 54 ~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~l 132 (498)
++..+++.+..+. ++++.+.+++.+.++.....|...++..++++++.+++.+.+|++.+. ..+++|+|+++|+.+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~~~a~~~ 105 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA---DNILVTNGGKQSIFN 105 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEcCCHHHHHHH
Confidence 4444444444443 346778888888876543345555567899999999999988875432 248999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEeec
Q 010897 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG 211 (498)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~~~ 211 (498)
++.++.++ +++|++++++|.++..+++..|++++.+|+++ +++.+|+++|++++++++++|+++++
T Consensus 106 ~~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 172 (388)
T 1j32_A 106 LMLAMIEP-------------GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTP 172 (388)
T ss_dssp HHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHhcCC-------------CCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCC
Confidence 98887432 46899999999999999999999999999874 24789999999999988999999999
Q ss_pred cCCccccc---CHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--cccC--CCCeeEEEEcCCccCC-CCC
Q 010897 212 STLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFR--LPLVKSINVSGHKYGL-VYA 283 (498)
Q Consensus 212 ~t~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~~--~~~~dsi~~s~hK~l~-~p~ 283 (498)
+||||.+. ++++|.++|+++ |+++|+|++|+++.. ...... ..+. ....+++..+.||+++ .+.
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 173 SNPTGMVYTPDEVRAIAQVAVEA------GLWVLSDEIYEKILY--DDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence 99999994 599999999999 999999999998752 111110 1111 1246888999999884 344
Q ss_pred CeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010897 284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEGYKNIMENCMGNARALREGLEKT 361 (498)
Q Consensus 284 g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~ 361 (498)
++|+++.++. +.+.+.....+ .+ .+. ..+.+++++..+ +.+.+++..++..++++++.+.|+++
T Consensus 245 r~G~~~~~~~--~~~~l~~~~~~-------~~--~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (388)
T 1j32_A 245 RVGFLAGPVP--LVKAATKIQGH-------ST--SNV---CTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM 310 (388)
T ss_dssp CCEEEECCHH--HHHHHHHHHHT-------TT--CSC---CHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEeCHH--HHHHHHHHHhh-------cc--cCC---CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5899986432 11111110000 00 111 123344333333 34557788888899999999999998
Q ss_pred CCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHh-cCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 362 GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK-FGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
+++++..+. ...++.+.++. .+.+..++.++|.+ +|+.+....... ...++|+++. .+.++++++++.|+++
T Consensus 311 ~g~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRis~~--~~~~~i~~~~~~l~~~ 383 (388)
T 1j32_A 311 PGLECPKPD-GAFYMFPSIAK-TGRSSLDFCSELLDQHQVATVPGAAFG---ADDCIRLSYA--TDLDTIKRGMERLEKF 383 (388)
T ss_dssp TTCBCCCCC-BTTEECCBCGG-GTCCHHHHHHHHHHHHCEECEEGGGGT---CTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCcccCCC-eeEEEEEecCC-CCCCHHHHHHHHHHhCCEEEeChhhhC---CCCcEEEEec--CCHHHHHHHHHHHHHH
Confidence 778776442 22333334532 13567889999986 798875432111 1356999986 5889999999999888
Q ss_pred HHHH
Q 010897 441 LKEI 444 (498)
Q Consensus 441 l~~l 444 (498)
++++
T Consensus 384 l~~~ 387 (388)
T 1j32_A 384 LHGI 387 (388)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 45
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.96 E-value=7.6e-27 Score=235.01 Aligned_cols=317 Identities=15% Similarity=0.067 Sum_probs=226.0
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.+.....++ .+.. .++++++++++|.+. ..+++|+|+++++.+++.++.++
T Consensus 45 ~~~~~v~~a~~~~~~~~~~y~--~~~~----~~lr~~la~~~~~~~-----~~v~~~~g~t~a~~~~~~~~~~~------ 107 (363)
T 3ffh_A 45 GTSKKVAAIQANSSVETEIYP--DGWA----SSLRKEVADFYQLEE-----EELIFTAGVDELIELLTRVLLDT------ 107 (363)
T ss_dssp CCCHHHHHHHHTCBSCCCBC------C----HHHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHHHCST------
T ss_pred CCCHHHHHHHHHHHHHhhcCC--Ccch----HHHHHHHHHHhCCCh-----hhEEEeCCHHHHHHHHHHHHccC------
Confidence 456888888887765432222 1222 355666888888764 24999999999999988876332
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHH
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 226 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~ 226 (498)
+++|+++.++|..+...++..|++++.+|++++ +.+|+++|+++++++|++|++++++||||.+.|+++|.+
T Consensus 108 -------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~ 179 (363)
T 3ffh_A 108 -------TTNTVMATPTFVQYRQNALIEGAEVREIPLLQD-GEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQA 179 (363)
T ss_dssp -------TCEEEEEESSCHHHHHHHHHHTCEEEEEECCTT-SCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred -------CCEEEEcCCChHHHHHHHHHcCCEEEEecCCCC-CCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 468999999999999999999999999999864 789999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccccC
Q 010897 227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHIN 305 (498)
Q Consensus 227 la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~ 305 (498)
+++.+.+ |+++|+|++|+++..+-...... ......-+.+..+.+|+++ ++.++|+++.+ ++.. +.+...
T Consensus 180 l~~~~~~----~~~li~De~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~l~~~-- 250 (363)
T 3ffh_A 180 FLDRVPS----DVLVVLDEAYIEYVTPQPEKHEK-LVRTYKNLIITRTFSKIYGLASARVGYGIAD-KEII-RQLNIV-- 250 (363)
T ss_dssp HHTTSCT----TSEEEEECTTGGGCSSCCCCCGG-GGGTCTTEEEEEESSSTTCCSSCCCEEEEEC-HHHH-HHHHHT--
T ss_pred HHHhCCC----CcEEEEeCchHhhcCccccCHHH-HhhcCCCEEEEeechhhhcCchhceeeeecC-HHHH-HHHHHh--
Confidence 9998743 79999999999765200001111 1112233466677889875 56667999873 2221 111100
Q ss_pred ccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCC
Q 010897 306 YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSA 385 (498)
Q Consensus 306 yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~ 385 (498)
... ++.+.....++..++. ..+.+++..++..++++++.+.|+++++++++.+ ..+++.++++.
T Consensus 251 -----~~~----~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~~~~~~~--- 314 (363)
T 3ffh_A 251 -----RPP----FNTTSIGQKLAIEAIK--DQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPA--NGNFVLIDLGI--- 314 (363)
T ss_dssp -----CCS----CCCBHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC--CSSEEEEECSS---
T ss_pred -----CCC----CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHhhCCCceECCC--CCeEEEEECCC---
Confidence 011 2222233333334443 2355678888889999999999999666887643 46778888743
Q ss_pred CCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 386 HTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 386 ~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
+..++.++|.++|+.+....... ...++|++++ +.++++++++.|+++
T Consensus 315 -~~~~~~~~l~~~gi~v~~g~~~~---~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 315 -EAGTIFSYLEKNGYITRSGAALG---FPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp -CHHHHHHHHHHTTEECEETTTTT---CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHCCeEEEeCccCC---CCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 67899999999998876533221 1468999987 889999999988875
No 46
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.96 E-value=2.1e-26 Score=238.13 Aligned_cols=360 Identities=14% Similarity=0.063 Sum_probs=238.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhccCCCCCcc-ccccc-CCChHHHHHHH--HHHhcc-CCCCCcCCcchHHHHHHHHHH
Q 010897 29 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNL-ASFVT-TWMEPECDKLV--MASINK-NYVDMDEYPVTTELQNRCVNM 103 (498)
Q Consensus 29 ~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~-~~~~~~~~~~l--~~~~~~-n~~~~~~~~~~~~le~~~~~~ 103 (498)
...+| .+.+..++.+.+......+..+.+++ ..+.+ ...++.+.+++ .+.+.. ++..++.+++..++..+++++
T Consensus 38 ~~~lp-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (438)
T 1wyu_A 38 PIDLP-EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTM 116 (438)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHH
Confidence 44678 78999999998876544321111212 22222 22344444443 233232 222233467888999999999
Q ss_pred HHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH----HHcCCeeE
Q 010897 104 IAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RYFEVELK 179 (498)
Q Consensus 104 la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~----~~~g~~~~ 179 (498)
+++++|++.. .+.+++|++.++..+..+++-. .+++|+++++.|.++...+ +..|++++
T Consensus 117 la~~~g~~~~-----~i~~~~g~taa~ea~~~a~~~~------------~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 117 IAELAGLEIA-----NASMYDGATALAEGVLLALRET------------GRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp HHHHHTSSEE-----CSCBSSHHHHHHHHHHHHHHHH------------TCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhCCCcc-----ceEEeCcHHHHHHHHHHHHhcC------------CCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 9999999742 3788899993332222222111 1479999999999887554 55899999
Q ss_pred EEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecC-cccccccccCCC
Q 010897 180 EVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA-SGGFIAPFLYPD 258 (498)
Q Consensus 180 ~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A-~~g~~~~~~~~~ 258 (498)
.|++ ++ +.+|+++ |+++|++|+++++ |+||.+.|+++|.++|+++ |+++|+|.. .+.+.. ..+
T Consensus 180 ~v~~-~~-~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~------g~~vivd~d~~a~g~~--~~~- 243 (438)
T 1wyu_A 180 TLPL-EG-GRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGA------GALFVAVADPLSLGVL--KPP- 243 (438)
T ss_dssp EECC-BT-TBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHT------TCEEEEECCTTGGGTB--CCH-
T ss_pred EEcC-cC-CccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHc------CCEEEEEechhhccCc--CCC-
Confidence 9997 33 6788876 6778999999998 9999999999999999999 999997754 221111 111
Q ss_pred CccccCCCCeeEEEEcCCc-----cCCCCCCeEEEEEeCCCCCCcccccccCccCC------CCCCccc-----------
Q 010897 259 LEWDFRLPLVKSINVSGHK-----YGLVYAGVGWVVWRTKDDLPDELVFHINYLGS------DQPTFTL----------- 316 (498)
Q Consensus 259 ~~~~~~~~~~dsi~~s~hK-----~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~------~~~~~~l----------- 316 (498)
.. .++|++++++|| |+++| |+|++++++. .. +.+. .++.+ ....+.+
T Consensus 244 --~~---~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~-~~l~---~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 244 --GA---YGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FV-RQLP---GRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp --HH---HTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GG-GGCC---SCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred --cc---CCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HH-HhCC---CceeccccccCCCcceeeeccccccccch
Confidence 11 247899999998 55566 9999988753 22 2111 11000 0000000
Q ss_pred -cCCCch---HHHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHH
Q 010897 317 -NFSKGS---SQIIAQYYQ--FIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFE 390 (498)
Q Consensus 317 -~~sr~~---~~~~a~~~~--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~ 390 (498)
.++.+. ..+.+++++ +..++.+|++++.++..++++++.+.|+++++++++.+.+..+++.|+.+ .+..+
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~----~~~~~ 388 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP----KDPEA 388 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS----SCHHH
T ss_pred hcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC----CCHHH
Confidence 112211 233444444 77788899999999999999999999999977998865334555666652 46789
Q ss_pred HHHHHHhcCcEe--eeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 391 ISEGLRKFGWIV--PAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 391 l~~~L~~~G~~v--~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+.++|.++|+.+ +.... ....++|++++..+|.++++++++.|++++
T Consensus 389 ~~~~L~~~gi~v~~~~~~~----~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 389 VRRALAERGFHGATPVPRE----YGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp HHHHHHHTTCCCCEECCTT----SCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCceeccccccc----cCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 999999999876 22111 124679999998899999999999988764
No 47
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.96 E-value=2.7e-27 Score=241.37 Aligned_cols=342 Identities=13% Similarity=0.077 Sum_probs=240.2
Q ss_pred CcccccccC-CChHHHHHHHHHHhccC----CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHH
Q 010897 58 LNLASFVTT-WMEPECDKLVMASINKN----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (498)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~l~~~~~~n----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~l 132 (498)
+++.+..+. ++++.+.+++.+.+... ...|....+..++++++.+++++.+|++.+. ..+++|+|+++|+.+
T Consensus 38 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~i~~~~g~~~al~~ 114 (398)
T 3ele_A 38 YDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNA---DNLYMTMGAAASLSI 114 (398)
T ss_dssp EECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESSHHHHHHH
T ss_pred EEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCCh---HHEEEccCHHHHHHH
Confidence 344444443 35678888888887663 2344455677899999999999999976432 348999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC-cEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeec
Q 010897 133 AGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG 211 (498)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~-~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~ 211 (498)
++.++.++ + ++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++|
T Consensus 115 ~~~~l~~~-------------g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 181 (398)
T 3ele_A 115 CFRALTSD-------------AYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIINSP 181 (398)
T ss_dssp HHHHHCCS-------------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSS
T ss_pred HHHHHcCC-------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCC
Confidence 98887432 4 689999999999999999999999999998656899999999999989999999999
Q ss_pred cCCcccccC---HHHHHHHHHH------hhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-C
Q 010897 212 STLTGEFED---VKLLHDLLTK------KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-V 281 (498)
Q Consensus 212 ~t~tG~~~~---l~~I~~la~~------~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~ 281 (498)
+||||.+.| +++|.++|++ + |+++++|++|+++.. ..............+.+..+.+|++. +
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 253 (398)
T 3ele_A 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGR------PIFIIADEPYREIVY--DGIKVPFVTKYYDNTLVCYSYSKSLSLP 253 (398)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHHHTS------CCEEEEECTTTTCBC--TTCCCCCGGGTCSSEEEEEESTTTSSCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhccCC------CeEEEEecccccccc--CCCCcCChHhhcCCeEEEEehhhcCCCc
Confidence 999999987 6667788988 7 999999999998752 11111112223345678889999886 7
Q ss_pred CCCeEEEEEeCCCCCCcccccccCc--cCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh
Q 010897 282 YAGVGWVVWRTKDDLPDELVFHINY--LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (498)
Q Consensus 282 p~g~g~~~~~~~~~l~~~~~~~~~y--l~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 359 (498)
+.++||++.++. .. ....+...+ ....... .+ ...++++++...+.... ..++..++++++.+.|+
T Consensus 254 G~r~G~~~~~~~-~~-~~~~~~~~~~~~~~~~~~----~~---~~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~L~ 321 (398)
T 3ele_A 254 GERIGYVLVPDE-VY-DKAELYAAVCGAGRALGY----VC---APSLFQKMIVKCQGATG---DINAYKENRDLLYEGLT 321 (398)
T ss_dssp TTCCEEEECCTT-ST-THHHHHHHHHHHHHHTTC----CC---SCHHHHHHHTTCTTCCC---CHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEcch-hh-hHHHHHHHHHHHhhhccc----cC---CCHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHH
Confidence 788999987653 21 100000000 0000000 11 12233444443333221 34666778888999998
Q ss_pred cCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 360 KTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
+++ +++..+. ...++.+.++. .+..++.+.|.++|+.+....... ...++|++++ .+.++++++++.|++
T Consensus 322 ~~g-~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~---~~~~iRis~~--~~~e~i~~~l~~l~~ 391 (398)
T 3ele_A 322 RIG-YHCFKPD-GAFYMFVKALE---DDSNAFCEKAKEEDVLIVAADGFG---CPGWVRISYC--VDREMIKHSMPAFEK 391 (398)
T ss_dssp HHT-CCEECCS-BSSEEEEECSS---SCHHHHHHHHHTTTEECEESGGGT---CTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred HcC-CeecCCC-eeEEEEEEcCC---CCHHHHHHHHHHCCEEEeCccccC---CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 875 7766543 33446667643 367899999999999875433221 1357999985 589999999999999
Q ss_pred HHHHHH
Q 010897 440 VLKEIE 445 (498)
Q Consensus 440 ~l~~l~ 445 (498)
++++++
T Consensus 392 ~l~~~~ 397 (398)
T 3ele_A 392 IYKKYN 397 (398)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 987753
No 48
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.96 E-value=6.9e-27 Score=239.22 Aligned_cols=349 Identities=11% Similarity=0.024 Sum_probs=243.4
Q ss_pred CCCCCccccccc---C-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHH
Q 010897 54 GNPRLNLASFVT---T-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129 (498)
Q Consensus 54 ~~p~~~~~~~~~---~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea 129 (498)
++..+++....+ . ++++.+.+++.+.+......|...++..++++.+.+++.+.+|++.+. ..+++|+|+++|
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~---~~v~~t~g~~~a 113 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP---DDVRVTAAVTEA 113 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHH
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCH---HHEEEcCChHHH
Confidence 344444444444 2 345778888888776544344444567889999999999888876532 348999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEE
Q 010897 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAA 208 (498)
Q Consensus 130 ~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~ 208 (498)
+.+++.++.++ +++|++++++|.++..+++..|++++.+|+++ +++.+|+++|++++++++++|++
T Consensus 114 l~~~~~~l~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i 180 (406)
T 1xi9_A 114 LQLIFGALLDP-------------GDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAV 180 (406)
T ss_dssp HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHhCCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEE
Confidence 99988887321 46899999999999999999999999999975 35789999999999988999999
Q ss_pred eeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--cccCCCCe-eEEEEcCCccCC-C
Q 010897 209 ILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRLPLV-KSINVSGHKYGL-V 281 (498)
Q Consensus 209 ~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~~~~~~-dsi~~s~hK~l~-~ 281 (498)
++++||||.+.| +++|.++|+++ |+++++|++|+++.. ..... ..+. ... +.+..+.||++. +
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~---~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~ 250 (406)
T 1xi9_A 181 INPNNPTGALYDKKTLEEILNIAGEY------EIPVISDEIYDLMTY---EGEHISPGSLT-KDVPVIVMNGLSKVYFAT 250 (406)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBS---SSCCCCHHHHC-SSSCEEEEEESTTTTCCG
T ss_pred ECCCCCCCCCcCHHHHHHHHHHHHHc------CCEEEEEcCcccccc---CCCCCCHHHcC-CCceEEEEeccccccCCC
Confidence 999999999865 99999999999 999999999998752 11110 1112 345 788889999985 4
Q ss_pred CCCeEEEEE-eCCC---CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010897 282 YAGVGWVVW-RTKD---DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREG 357 (498)
Q Consensus 282 p~g~g~~~~-~~~~---~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~ 357 (498)
+.++|++++ .++. .+.+.+.....+. ++.+.....+..++++. +.+.+++..++..++++++.+.
T Consensus 251 G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~----------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~ 319 (406)
T 1xi9_A 251 GWRLGYMYFVDPENKLSEVREAIDRLARIR----------LCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKR 319 (406)
T ss_dssp GGCCEEEEEECTTCTTHHHHHHHHHHHHHT----------CCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEecCchhHHHHHHHHHHHHHhh----------cCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 455899884 2321 1111111111110 11112233333334432 3445777888888999999999
Q ss_pred HhcCCCeEEeeCCCCccEEEE-EecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHH
Q 010897 358 LEKTGRFEILSKDVGVPLVAF-SLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLIS 435 (498)
Q Consensus 358 L~~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~ 435 (498)
|++++++++..+ ..++++| +++...+.+..++.++|. ++|+.+....... ..+..++|+++. .+.++++++++
T Consensus 320 L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~lRis~~--~~~~~i~~~~~ 394 (406)
T 1xi9_A 320 LNEIPGISTTKP--QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFG-EYGAGHFRAVFL--PPIEILEEAMD 394 (406)
T ss_dssp HHTSTTEECCCC--CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGC-GGGTTBEEEECC--SCHHHHHHHHH
T ss_pred HHhCCCCeeecC--CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcC-CCCCCEEEEEec--CCHHHHHHHHH
Confidence 999977887643 3444444 664211356789999987 8998875432111 122457999996 78899999999
Q ss_pred HHHHHHHHH
Q 010897 436 HIEEVLKEI 444 (498)
Q Consensus 436 ~l~~~l~~l 444 (498)
.|+++++++
T Consensus 395 ~l~~~l~~~ 403 (406)
T 1xi9_A 395 RFEKFMKER 403 (406)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 998887653
No 49
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.96 E-value=2.1e-26 Score=234.22 Aligned_cols=359 Identities=13% Similarity=0.056 Sum_probs=243.1
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccccCC-ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCC
Q 010897 39 KEAAYQVINDELMLDGNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKT 117 (498)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~ 117 (498)
..++++..++. .-+++..+++.+..+.. ++|.+.+++.+.+......|....+..++++++.+++.+.+|.+.+.
T Consensus 16 ~~~~~~~~~~~-~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~--- 91 (391)
T 3h14_A 16 VMDVMEAARRA-EEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDP--- 91 (391)
T ss_dssp THHHHHHHHHH-HHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCG---
T ss_pred HHHHHHHHHHH-HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCH---
Confidence 34444444332 23455555666655443 36778999988887654455555567889999999999988876432
Q ss_pred cceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCC-ccccCHHHHH
Q 010897 118 AVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAV 196 (498)
Q Consensus 118 ~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~L~ 196 (498)
..+++|+|+++|+.+++.++.++ +++|+++.++|..+...++..|++++.++++++ ++.+|+++|+
T Consensus 92 ~~v~~t~g~~~al~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 158 (391)
T 3h14_A 92 GRVVITPGSSGGFLLAFTALFDS-------------GDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFA 158 (391)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHT
T ss_pred HHEEEecChHHHHHHHHHHhcCC-------------CCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHH
Confidence 34899999999999988877432 468999999999999999999999999999743 3678999998
Q ss_pred HHhhhCCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEE
Q 010897 197 ELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV 273 (498)
Q Consensus 197 ~~i~~~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~ 273 (498)
++ ++++|++++++||||.+.| +++|.++|+++ |+++|+|++|+++.. .............+.+..
T Consensus 159 ~~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~i~~~ 226 (391)
T 3h14_A 159 GL---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ------GASFISDEIYHGIEY---EAKAVTALELTDECYVIN 226 (391)
T ss_dssp TS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBS---SSCCCCGGGTCSSSEEEE
T ss_pred hc---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEECcchhccc---CCCCcChhhcCCCEEEEE
Confidence 87 7899999999999999987 88899999999 999999999998752 111111112234556777
Q ss_pred cCCccCC-CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 010897 274 SGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNAR 352 (498)
Q Consensus 274 s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~ 352 (498)
+.+|+++ .+.++|+++.+++ +.+.+...... ..++.+.....+..+++. ..+.+.+..++..++++
T Consensus 227 s~sK~~g~~G~r~G~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~ 293 (391)
T 3h14_A 227 SFSKYFSMTGWRVGWMVVPED--QVRVVERIAQN---------MFICAPHASQVAALAALD--CDAELQANLDVYKANRK 293 (391)
T ss_dssp ESSSTTCCTTSCCEEEECCGG--GHHHHHHHHHH---------TTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred echhccCCccceeEEEEeCHH--HHHHHHHHHhh---------hccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHH
Confidence 8899885 7788999986432 21111100000 001222222233333333 55677888889999999
Q ss_pred HHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEeecCCCCHHHHH
Q 010897 353 ALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVREDFSRSLVE 431 (498)
Q Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~ 431 (498)
++.+.|++++ +.....+....++.+.++. ...+..++.++|.++ |+.+..........+..++|+++.. +.++++
T Consensus 294 ~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~ 369 (391)
T 3h14_A 294 LMLERLPKAG-FTRIAPPDGAFYVYADVSD-LTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIE 369 (391)
T ss_dssp HHHHHHHHHT-CCCBCCCCBTTEEEEECTT-TCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHH
T ss_pred HHHHHHHHcC-CCcccCCCeeEEEEEecCc-cCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHH
Confidence 9999999886 4443333233455556643 235788999998775 9887643322211346789999875 778888
Q ss_pred HHHHHHHHHHHH
Q 010897 432 RLISHIEEVLKE 443 (498)
Q Consensus 432 ~l~~~l~~~l~~ 443 (498)
++++.|+++++.
T Consensus 370 ~~l~~l~~~~~~ 381 (391)
T 3h14_A 370 EGLDRLEAFMQA 381 (391)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877764
No 50
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.96 E-value=5.7e-27 Score=236.14 Aligned_cols=316 Identities=13% Similarity=0.071 Sum_probs=226.6
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
+++|.+.+++.+.+..... |..... . ++++.+++++|.+. ..+++|+|+++++.+++.++.++
T Consensus 43 ~~~~~v~~a~~~~~~~~~~-y~~~~~-~----~lr~~la~~~~~~~-----~~v~~~~g~~~a~~~~~~~l~~~------ 105 (365)
T 3get_A 43 GTPPKAIECLRQNANKAHL-YPDDSM-I----ELKSTLAQKYKVQN-----ENIIIGAGSDQVIEFAIHSKLNS------ 105 (365)
T ss_dssp CSCHHHHHHHHHHGGGTTS-CCCTTC-H----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHHHCCT------
T ss_pred CCCHHHHHHHHHHHHhhcc-CCCCCh-H----HHHHHHHHHhCCCc-----ceEEECCCHHHHHHHHHHHHhCC------
Confidence 4678899999888874332 222222 3 45566888888754 24999999999999888876432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHH
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 226 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~ 226 (498)
+++|+++.++|..+...++..|++++.+|++++++ +|+++|+++++++|++|++++++||||.+.|+++|.+
T Consensus 106 -------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~ 177 (365)
T 3get_A 106 -------KNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATE 177 (365)
T ss_dssp -------TCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred -------CCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHH
Confidence 46899999999999999999999999999833348 9999999999999999999999999999999999999
Q ss_pred HHH--HhhcccCCCceEEEecCccccc---ccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCccc
Q 010897 227 LLT--KKNEETGWDTPIHVDAASGGFI---APFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 227 la~--~~~~~~~~~~~l~vD~A~~g~~---~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~ 300 (498)
+++ ++ |+++++|++|+++. .+...............+.+..+.+|+++ .+.++|+++. +++.. ..+
T Consensus 178 l~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~-~~~ 249 (365)
T 3get_A 178 FIKGVNE------DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANII-SAF 249 (365)
T ss_dssp HHHTSCT------TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHH-HHH
T ss_pred HHHhCCC------CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc-CHHHH-HHH
Confidence 998 66 99999999998765 11000110001111235677889999874 6778999987 32221 111
Q ss_pred ccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEe
Q 010897 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSL 380 (498)
Q Consensus 301 ~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (498)
.... .. ++.+.....++..++. ..+.+.+..++..++++++.+.|+++ ++++..+ ..+++.+++
T Consensus 250 ~~~~-------~~----~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~~~~~~~~ 313 (365)
T 3get_A 250 YKLR-------AP----FNVSNLALKAAVAAMD--DDEFTEKTLENNFSQMELYKEFAKKH-NIKIIDS--YTNFITYFF 313 (365)
T ss_dssp HHHS-------CT----TCSCHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCC--SSSEEEEEC
T ss_pred HHhc-------CC----CCcCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCC--CCeEEEEEC
Confidence 1100 01 1122223333333333 23567888888899999999999998 4887644 467777787
Q ss_pred cCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 381 KDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+. . +..++.+.|.++|+.+....... ..++|++++ +.++++++++.|++++
T Consensus 314 ~~--~-~~~~~~~~l~~~gi~v~~g~~~~----~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 314 DE--K-NSTDLSEKLLKKGIIIRNLKSYG----LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SS--S-CHHHHHHHHHTTTEECEECGGGT----CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CC--C-CHHHHHHHHHHCCEEEEECccCC----CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 54 2 77899999999998876543221 567999987 8899999999998775
No 51
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.96 E-value=2.2e-27 Score=242.09 Aligned_cols=326 Identities=12% Similarity=0.067 Sum_probs=235.0
Q ss_pred ChHHHHHHHHHHhccCCCCCc---CCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+++.+.+++.+.+......+. ...+..++.+++++++++++|.+. +++|+|+++|+.+++.++.++
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------v~~~~ggt~a~~~~~~~~~~~---- 126 (398)
T 3a2b_A 58 TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEA-------AILFSTGFQSNLGPLSCLMGR---- 126 (398)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHSSCT----
T ss_pred CCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC----
Confidence 567788888877755322222 223456788899999999999742 999999999999988887432
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh----CCeEEEEeeccCCcccccC
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGSTLTGEFED 220 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~----~t~~v~~~~~~t~tG~~~~ 220 (498)
++.|+++.++|.++..+++..|++++.+|+ +|+++|++++++ ++++|++++++||||.+.|
T Consensus 127 ---------gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~ 191 (398)
T 3a2b_A 127 ---------NDYILLDERDHASIIDGSRLSFSKVIKYGH------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN 191 (398)
T ss_dssp ---------TCEEEEETTCCHHHHHHHHHSSSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC
T ss_pred ---------CCEEEECCccCHHHHHHHHHcCCceEEeCC------CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC
Confidence 468999999999999999999999988874 689999999987 7899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCC-CCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcc
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~-~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~ 299 (498)
+++|.++|+++ |+++++|++|+.+............++. +++|++..+.||++. +.| |+++.++ +.+ +.
T Consensus 192 ~~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~-~~~-~~ 261 (398)
T 3a2b_A 192 LPELTSIANEF------DAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDA-DVI-DF 261 (398)
T ss_dssp HHHHHHHHHHH------TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECH-HHH-HH
T ss_pred HHHHHHHHHHc------CcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCH-HHH-HH
Confidence 99999999999 9999999999876421100111001122 247899999999986 667 9888643 221 21
Q ss_pred cccc-cCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEE
Q 010897 300 LVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAF 378 (498)
Q Consensus 300 ~~~~-~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f 378 (498)
+... ..+.. .++.......+...+++.+ +.+++..++..++++++.+.|+++ ++++..+ ..+++.+
T Consensus 262 l~~~~~~~~~--------~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~g~~~~~ 328 (398)
T 3a2b_A 262 LKHNARSVMF--------SASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLGAT--ESPILPI 328 (398)
T ss_dssp HHHHCHHHHS--------SBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSC--CSSEEEE
T ss_pred HHHhccccee--------cCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCC--CCCEEEE
Confidence 1110 11111 1222223333344555543 234577888889999999999988 4776543 4578888
Q ss_pred EecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 379 SLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 379 ~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.++. +.+..++.++|.++|+.+.....+....+..++|++++..++.++++++++.|+++++++
T Consensus 329 ~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 329 FIRS--NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp ECCC--HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EcCC--HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 8742 345678999999999988654332212245789999988789999999999999988653
No 52
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.96 E-value=4.1e-27 Score=235.73 Aligned_cols=391 Identities=15% Similarity=0.044 Sum_probs=260.4
Q ss_pred HHhhCCCCCCCCCCCCHHHHHHHHHHhhhccCCCCCcccccccCCC-h-HHHHHHHHH-Hhcc------CCCCCcCCc--
Q 010897 23 VRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWM-E-PECDKLVMA-SINK------NYVDMDEYP-- 91 (498)
Q Consensus 23 ~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~-~~~~~~l~~-~~~~------n~~~~~~~~-- 91 (498)
++..|.+.++|+.|.+...+.-.+.+.-.+|.|... +.+..+- + ..+..++.. .++- ..--.+..|
T Consensus 32 ~~~ll~~r~~P~~g~~d~~ie~~l~~la~mdsnn~~---~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKA 108 (501)
T 3hl2_A 32 IRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFL---GNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKA 108 (501)
T ss_dssp HHHHHHHCCCCSSCCCHHHHHHHHHHHHTTBGGGCS---SCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTB
T ss_pred HHHHHHcCCCCccCCCHHHHHHHHHHHHhhccCCCc---ccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCc
Confidence 346666779999999999998888888777755432 1111111 0 001122221 1111 000012222
Q ss_pred -chHH----HHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhH
Q 010897 92 -VTTE----LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC 166 (498)
Q Consensus 92 -~~~~----le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~ 166 (498)
+... -+..+.+||+.+ |+|.. ...++++|+|.+++..++++.++. .+ +.+.||+|..+|.|
T Consensus 109 aGssll~~ltn~l~ld~L~~~-G~~~~----~~~flVnGsTgg~lamilaa~r~~--------rp-g~d~VIvpRn~HKS 174 (501)
T 3hl2_A 109 AGSSLLNKITNSLVLDIIKLA-GVHTV----ANCFVVPMATGMSLTLCFLTLRHK--------RP-KAKYIIWPRIDQKS 174 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCTTC----CEEEEESSCHHHHHHHHHHHHHHH--------CT-TCCEEEEECCCCHH
T ss_pred cchHHHHHHHHHHHHHHHHHc-CCCCC----CcEEEECcHHHHHHHHHHHHcCcc--------cC-CCCEEEEecchHHH
Confidence 3322 234577888887 99963 347888899977776666655431 00 13689999999999
Q ss_pred HHHHHHHcCCeeEEEEec--CCccccCHHHHHHHhhhC---CeEEEEeeccCC-cccccCHHHHHHHHHHhhcccCCCce
Q 010897 167 WEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDEN---TICVAAILGSTL-TGEFEDVKLLHDLLTKKNEETGWDTP 240 (498)
Q Consensus 167 ~~~~~~~~g~~~~~v~~~--~~~~~~d~~~L~~~i~~~---t~~v~~~~~~t~-tG~~~~l~~I~~la~~~~~~~~~~~~ 240 (498)
+.+++.++|+++++|+.. ++.+.+|+++++++|++. .++++++.++++ .|.++|+++|+++|++| |+|
T Consensus 175 v~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~------gIp 248 (501)
T 3hl2_A 175 CFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANY------DIP 248 (501)
T ss_dssp HHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHH------TCC
T ss_pred HHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHc------CCe
Confidence 999999999999999873 445899999999999863 344444444444 45779999999999999 999
Q ss_pred EEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCC
Q 010897 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK 320 (498)
Q Consensus 241 l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr 320 (498)
+|||+|||.... |....+...+++..+|+++.|.||++++|.|.++++.++++.+.. ....|. |++
T Consensus 249 llVDeAhGah~~-~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~---~~~~yP----------Gr~ 314 (501)
T 3hl2_A 249 HIVNNAYGVQSS-KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE---ISKMYP----------GRA 314 (501)
T ss_dssp EEEECTTCTTCH-HHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHH---HHHTSC----------SCB
T ss_pred EEEeCcchhhhh-hhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHH---HHHhCC----------CCC
Confidence 999999998753 221111122333359999999999999999988888887654322 122332 455
Q ss_pred chHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeeCCCCccEEEEEecCC---CCCCHHHHHHH
Q 010897 321 GSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDS---SAHTVFEISEG 394 (498)
Q Consensus 321 ~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~---~~~~~~~l~~~ 394 (498)
.++..+.+|+++..+|.+||++.++++.+++++|.+.|+++. +-+++..+...--+++.+... ...+...|...
T Consensus 315 S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~ 394 (501)
T 3hl2_A 315 SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSM 394 (501)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHH
Confidence 568889999999999999999999999999999999998853 245554432222344555321 12235688888
Q ss_pred HHhcCcEeeeecCC-----------------CCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHcCccc
Q 010897 395 LRKFGWIVPAYTMP-----------------ANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSR 450 (498)
Q Consensus 395 L~~~G~~v~~~~~~-----------------~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~~~~~ 450 (498)
|..+++.-.....+ .......++-+...-..+++|+|.|++.|++++..+++....
T Consensus 395 Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~~ 467 (501)
T 3hl2_A 395 LFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSK 467 (501)
T ss_dssp HHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 98877532111111 111224577777666789999999999999999988765443
No 53
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.96 E-value=2.2e-26 Score=237.14 Aligned_cols=352 Identities=15% Similarity=0.086 Sum_probs=243.4
Q ss_pred CCcccccccC-----CChHHHHHHHHHHhccCC-CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHH
Q 010897 57 RLNLASFVTT-----WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (498)
Q Consensus 57 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~ 130 (498)
.++|..+.+. ++++.+.+++.+.+.... ..|....+..++++.+.+++... |.+.+ ...+++|+|+++|+
T Consensus 56 ~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~---~~~v~~t~g~t~al 131 (427)
T 3dyd_A 56 MISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLE---AKDVILTSGCSQAI 131 (427)
T ss_dssp CEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCC---GGGEEEESSHHHHH
T ss_pred EEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCC---hHHEEEecCcHHHH
Confidence 3666766653 567889999888877632 23444445566666644443322 22221 13489999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEe
Q 010897 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAI 209 (498)
Q Consensus 131 ~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~ 209 (498)
.+++.++.++ +++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++++++++|+++
T Consensus 132 ~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~ 198 (427)
T 3dyd_A 132 DLCLAVLANP-------------GQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVN 198 (427)
T ss_dssp HHHHHHHCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEE
T ss_pred HHHHHHhcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEE
Confidence 9998887432 46899999999999999999999999999863 457899999999999889999999
Q ss_pred eccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCC-c-cccCCCCeeEEEEcCCcc-CCCCC
Q 010897 210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFRLPLVKSINVSGHKY-GLVYA 283 (498)
Q Consensus 210 ~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~-~~~~~~~~dsi~~s~hK~-l~~p~ 283 (498)
+++||||.+.| +++|.++|+++ |+++++|++|+++.. ..... . ..+.......+..|.+|. ++.+.
T Consensus 199 ~p~nptG~~~~~~~l~~i~~~~~~~------~~~~i~Deay~~~~~--~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~ 270 (427)
T 3dyd_A 199 NPSNPCGSVFSKRHLQKILAVAARQ------CVPILADEIYGDMVF--SDCKYEPLATLSTDVPILSCGGLAKRWLVPGW 270 (427)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTTTCBC--SSCCCCCGGGGCSSCCEEEEEESTTTSSCGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcCchhhcc--CCCcCccHHHhCCCCcEEEEeeccccCCCcCc
Confidence 99999999999 99999999999 999999999998752 11111 0 111111223456699996 66777
Q ss_pred CeEEEEEeCCCCCC-cccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010897 284 GVGWVVWRTKDDLP-DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG 362 (498)
Q Consensus 284 g~g~~~~~~~~~l~-~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~ 362 (498)
++|+++.+++.... ..+......+. . ..++.+.....++..+|.....+.+.++.++..++++++.+.|++++
T Consensus 271 riG~~~~~~~~~~~~~~i~~~l~~~~----~--~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 344 (427)
T 3dyd_A 271 RLGWILIHDRRDIFGNEIRDGLVKLS----Q--RILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIP 344 (427)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH----H--HHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ceEEEEecCcchhhHHHHHHHHHHHH----h--ccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999988642211 11000000000 0 00222223344444555544567788889999999999999999998
Q ss_pred CeEEeeCCCCccEEEEEecCC---CCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHH
Q 010897 363 RFEILSKDVGVPLVAFSLKDS---SAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIE 438 (498)
Q Consensus 363 ~~~~~~~~~~~~~v~f~~~~~---~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~ 438 (498)
+++++.+. ..+++.+.++.. ...+..+++++|. ++|+.+...... ....++|+++. .+.++++++++.|+
T Consensus 345 g~~~~~p~-~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~---~~~~~iRis~~--~~~e~i~~~l~~l~ 418 (427)
T 3dyd_A 345 GLRPVRPS-GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCF---EYPNFIRVVIT--VPEVMMLEACSRIQ 418 (427)
T ss_dssp TEEEECCS-BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGG---TCTTEEEEESC--SCHHHHHHHHHHHH
T ss_pred CceecCCC-eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCccc---CCCCeEEEEEC--CCHHHHHHHHHHHH
Confidence 88876543 556777777421 1346778998885 789887543221 12467999986 68899999999999
Q ss_pred HHHHHHH
Q 010897 439 EVLKEIE 445 (498)
Q Consensus 439 ~~l~~l~ 445 (498)
++++++.
T Consensus 419 ~~l~~~~ 425 (427)
T 3dyd_A 419 EFCEQHY 425 (427)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 8887654
No 54
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=1.5e-27 Score=243.02 Aligned_cols=328 Identities=16% Similarity=0.077 Sum_probs=233.3
Q ss_pred ChHHHHHHHHHHhccCCCCCc---CCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
++|.+.+++.+.+......+. ...+......++++++++++|.+. .+++++|++|+.+++.++.++
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~sGt~a~~~~l~~~~~~---- 126 (399)
T 3tqx_A 58 DHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD-------TILYSSCFDANGGLFETLLGP---- 126 (399)
T ss_dssp TCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHTTHHHHCCT----
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc-------EEEECchHHHHHHHHHHhcCC----
Confidence 467788888777765221111 112344556678888999999763 556666789998887766332
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh------CCeEEEEeeccCCcccc
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEF 218 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~------~t~~v~~~~~~t~tG~~ 218 (498)
++.|+++.++|.++...++..|++++.++. +|+++|++++++ ++++|++++++||||.+
T Consensus 127 ---------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~ 191 (399)
T 3tqx_A 127 ---------EDAIISDELNHASIIDGIRLCKAQRYRYKN------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGII 191 (399)
T ss_dssp ---------TCEEEEETTCCHHHHHHHHSCCSEEEEECT------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEE
T ss_pred ---------CCEEEECCcccHHHHHHHHHcCCceeEeCC------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCc
Confidence 468999999999999999999999888874 467788888876 79999999999999999
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccC-CCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCC
Q 010897 219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP 297 (498)
Q Consensus 219 ~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~-~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~ 297 (498)
.|+++|.++|+++ |+++|+|++|+.+..+.........++ ....|++..+.||+++++.| |+++.++ +.+
T Consensus 192 ~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~- 262 (399)
T 3tqx_A 192 ADLKSICDLADKY------NALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHK-EII- 262 (399)
T ss_dssp CCHHHHHHHHHHT------TCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHH-
T ss_pred CCHHHHHHHHHHc------CCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCH-HHH-
Confidence 9999999999999 999999999964321110000011112 23578999999999986666 8887543 221
Q ss_pred ccccc-ccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEE
Q 010897 298 DELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376 (498)
Q Consensus 298 ~~~~~-~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v 376 (498)
+.+.. ...|. ..++.+...+.+...++..+. ++..+..++..++++++.+.|++++ +++..+ ..+++
T Consensus 263 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~ 330 (399)
T 3tqx_A 263 EWLRNRSRPYL--------FSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLG-FQLVPG--NHPII 330 (399)
T ss_dssp HHHHHHCHHHH--------SSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC--SSSEE
T ss_pred HHHHHhCccee--------ccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcC-CCcCCC--CCCEE
Confidence 11111 11111 112333344445555555443 5577888999999999999999885 776632 57788
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 377 AFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.+.+++ ..+..++.++|.++|+.+.....+....+..++|++++...+.++++++++.|+++++++
T Consensus 331 ~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 331 PVMLGD--AQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp EEEEEC--HHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCC--HHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 888853 245679999999999988755444333556789999988889999999999999998764
No 55
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=239.99 Aligned_cols=336 Identities=12% Similarity=0.022 Sum_probs=240.5
Q ss_pred cCCChHHHHHHHHHHhcc---CCCC----CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceee-ecChhHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLA 136 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~---n~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~g~sea~~la~~a 136 (498)
+.+.++++.++|.+.+.. |+.. ...++...++-+++++.+++++|.+.+ ..+++ |.|+|+++.+++..
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~a~~~ 96 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN----YKVIFLQGGGCGQFSAVPLN 96 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----CeEEEEcCchHHHHHHHHHh
Confidence 445678899999887753 2221 122345677778999999999999752 23777 57999999988877
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCCchhH--HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
+..+ ..++++++...+|++ |.+.++..|+.++.++++++ +..+++.++..++++|++|.+++.+|.
T Consensus 97 l~~~-----------~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~-~~~~~~~~~~~i~~~t~lV~~~h~et~ 164 (377)
T 3e77_A 97 LIGL-----------KAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS-YTKIPDPSTWNLNPDASYVYYCANETV 164 (377)
T ss_dssp HGGG-----------STTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS-SCSCCCGGGCCCCTTCSCEEEESEETT
T ss_pred ccCC-----------CCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC-cCCCCChHHhccCCCccEEEEeCccCc
Confidence 6432 013567666666654 34456667887777787654 567788888788889999999999999
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCC
Q 010897 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (498)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~ 294 (498)
||.+.|+ +++++ ++++|||++++.+..|+ |+. ..+.+.+++|||+ +|.|+|++++|++.
T Consensus 165 tG~~~pi-----i~~~~------~~~~~vD~~q~~g~~~i-------d~~--~~~~~~~s~~K~~-gp~G~g~l~~~~~~ 223 (377)
T 3e77_A 165 HGVEFDF-----IPDVK------GAVLVCDMSSNFLSKPV-------DVS--KFGVIFAGAQKNV-GSAGVTVVIVRDDL 223 (377)
T ss_dssp TTEECSS-----CCCCT------TCCEEEECTTTTTSSCC-------CGG--GCSEEEEEGGGTT-SCTTCEEEEEETTS
T ss_pred hheEchh-----hhccC------CCEEEEEcccccCCCCC-------chh--hcCEEEEeccccc-CCCccEEEEEcHHH
Confidence 9999998 46777 99999999998876554 221 2335789999999 69999999998753
Q ss_pred CCCcccccccCccC--CCCCCccccCCCchHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC-
Q 010897 295 DLPDELVFHINYLG--SDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRFEILSKD- 370 (498)
Q Consensus 295 ~l~~~~~~~~~yl~--~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~- 370 (498)
+....+..+.|+. .........+|.+...++++..+++.+..+ |+.++.++..+++++|.+.|++++++.+...+
T Consensus 224 -l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~ 302 (377)
T 3e77_A 224 -LGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEP 302 (377)
T ss_dssp -CSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCG
T ss_pred -HhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCH
Confidence 2221111222331 001111223677778888999999998888 89999999999999999999999888865422
Q ss_pred -CCcc-EEEEEecCCCC-CCH-HHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 371 -VGVP-LVAFSLKDSSA-HTV-FEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 371 -~~~~-~v~f~~~~~~~-~~~-~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
.+.+ +++|++++-+. .+. ..+.+.|.++|+.+.... ...+.+|+|+...+|.+++|+|++.|++++++
T Consensus 303 ~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~-----~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 303 QNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGH-----RSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp GGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCC-----TTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCC-----CcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1344 69999965211 111 367788889998864321 11234999999999999999999999998764
No 56
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=1.7e-27 Score=241.32 Aligned_cols=342 Identities=13% Similarity=0.052 Sum_probs=234.1
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
|..+++.+.+++.+.... . .+|.......+++++++++++...+. +...+++|+|+++|+.+++.++...+
T Consensus 13 p~~~~~~v~~a~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~g~t~al~~~~~~~~~~~--- 83 (385)
T 2bkw_A 13 PIILSGAVQKALDVPSLG---H--TSPEFVSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGTLGWDIFASNFILSK--- 83 (385)
T ss_dssp SCCCCHHHHHTTSCCCCC---T--TSHHHHHHHHHHHHHHHHHTTCCGGG-TCEEEEEESCTTHHHHHHHHHHSCTT---
T ss_pred CcCchHHHHHHHhccccc---c--CCHHHHHHHHHHHHHHHHHhCCCCCC-CCceEEEcCchHHHHHHHHHHHhccC---
Confidence 334557776666544332 1 14444445556777888888764210 01248999999999999988874100
Q ss_pred HHhcCCCCCCcEEEEc-CCc-hhHHHHHHHHcCCeeEEEEe-cCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccC
Q 010897 145 RKEQGKPYDKPNIVTG-ANV-QVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED 220 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s-~~~-h~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~ 220 (498)
..+++|+++ .+. |.++...++..|++++.+++ +++ +.+|+++|++++++ ++++|++++++|+||.+.|
T Consensus 84 -------~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 155 (385)
T 2bkw_A 84 -------APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIG-ESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD 155 (385)
T ss_dssp -------CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTT-SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred -------CCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCC-CCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC
Confidence 013577666 333 33445778889999999998 654 78999999999987 8999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~ 300 (498)
+++|.++|++++. |+++|+|++|+.+..++ ++...++|+++.++||+++++.|+|+++++++ .+...+
T Consensus 156 l~~i~~~~~~~~~----~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~-~~~~~l 223 (385)
T 2bkw_A 156 LKAISQAIKQTSP----ETFFVVDAVCSIGCEEF-------EFDEWGVDFALTASQKAIGAPAGLSISLCSSR-FMDYAL 223 (385)
T ss_dssp HHHHHHHHHHHCT----TSEEEEECTTTTTTSCC-------CTTTTTCSEEEEESSSTTCCCSCEEEEEECHH-HHHHHT
T ss_pred HHHHHHHHHhhCC----CCEEEEECccccCCccc-------cccccCceEEEecCccccccCCcceEEEEcHH-HHHHHH
Confidence 9999999999832 79999999998654322 12222578999999999999999999998653 111011
Q ss_pred cc-----ccCccCC-----------CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Q 010897 301 VF-----HINYLGS-----------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL-EKTGR 363 (498)
Q Consensus 301 ~~-----~~~yl~~-----------~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L-~~~~~ 363 (498)
.. ...|.+. ........++.+...++++.++++.+...++.++.++..++++++.+.| +++ +
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g 302 (385)
T 2bkw_A 224 NDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-Q 302 (385)
T ss_dssp CHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-C
T ss_pred hhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 00 0011100 0000000134444555666677776666678888999999999999999 888 5
Q ss_pred eEEeeCC----CCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEe-ecC---CCCHHHHHHHHH
Q 010897 364 FEILSKD----VGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVV-VRE---DFSRSLVERLIS 435 (498)
Q Consensus 364 ~~~~~~~----~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~-v~~---~~t~~~~~~l~~ 435 (498)
++++.+. ...++++|++++ ..++.++|.++|+.+...... .....++|++ +.. ..+.++++++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~--~~~~~~iRis~~~~~~~~~~~e~i~~~~~ 375 (385)
T 2bkw_A 303 LTSVSRYPSNMSAHGLTAVYVAD-----PPDVIAFLKSHGVVIAGGIHK--DIGPKYIRIGHMGVTACNKNLPYMKNCFD 375 (385)
T ss_dssp CEESSCSSSTTBCSSCEEEECSC-----HHHHHHHHHHTTEECBCCCCT--TTGGGEEEECCCGGGTSSTTCTHHHHHHH
T ss_pred ceecccCcccccCCceEEEecCC-----HHHHHHHHHHCCeEEeCCCCc--ccCCCEEEEEccccccccCCHHHHHHHHH
Confidence 8887532 146788888742 568999999999887543221 1235689999 653 458899999999
Q ss_pred HHHHHHHH
Q 010897 436 HIEEVLKE 443 (498)
Q Consensus 436 ~l~~~l~~ 443 (498)
.|++++++
T Consensus 376 ~l~~~~~~ 383 (385)
T 2bkw_A 376 LIKLALQR 383 (385)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99887643
No 57
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.95 E-value=3e-27 Score=241.49 Aligned_cols=346 Identities=12% Similarity=-0.009 Sum_probs=245.8
Q ss_pred Cccccccc--CCChHHHHHHHHHHhccCC-CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHH
Q 010897 58 LNLASFVT--TWMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134 (498)
Q Consensus 58 ~~~~~~~~--~~~~~~~~~~l~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~ 134 (498)
+++.++.+ .+++|.+.+++.+.+.... ..|....+..++++++.+++++++|.+.+.. ..+++|+|+++|+.+++
T Consensus 42 id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~--~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 42 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDAR--DGLIITPGTQGALFLAV 119 (407)
T ss_dssp EETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTT--TSEEEESHHHHHHHHHH
T ss_pred eeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CcEEEeCCcHHHHHHHH
Confidence 44554333 3456778888888776532 2344456778899999999999999864221 23999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec-----CCccccCHHHHHHHhhhCCeEEEEe
Q 010897 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-----EGYYVMNPVKAVELVDENTICVAAI 209 (498)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~-----~~~~~~d~~~L~~~i~~~t~~v~~~ 209 (498)
.++..+ +++|+++.++|.++...++..|++++.+|++ ++++.+|+++|++++++++++|+++
T Consensus 120 ~~l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 186 (407)
T 3nra_A 120 AATVAR-------------GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS 186 (407)
T ss_dssp HTTCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEE
T ss_pred HHhCCC-------------CCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEc
Confidence 776332 4689999999999999999999999999983 2457899999999999899999999
Q ss_pred eccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--ccc--CCCCeeEEEEcCCccCC-C
Q 010897 210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDF--RLPLVKSINVSGHKYGL-V 281 (498)
Q Consensus 210 ~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~--~~~~~dsi~~s~hK~l~-~ 281 (498)
+++||||.+.| +++|.++|+++ |+++++|++|+++.. ...... ..+ .....+.+..+.+|+++ .
T Consensus 187 ~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 258 (407)
T 3nra_A 187 NPNNPAGVVYSAEEIGQIAALAARY------GATVIADQLYSRLRY--AGASYTHLRAEAAVDAENVVTIMGPSKTESLS 258 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBC--TTCCCCCGGGCTTSCGGGEEEEECSSSTTCCG
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCCChhhcCcccCCcEEEEeCcccccCCC
Confidence 99999999988 99999999999 999999999998752 111110 011 12345688889999986 6
Q ss_pred CCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHHh
Q 010897 282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--FEGYKNIMENCMGNARALREGLE 359 (498)
Q Consensus 282 p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg--~~g~~~~~~~~~~~a~~l~~~L~ 359 (498)
+.++|+++.+. +.. +.+..... .++ ++. ..+.+.++...+. .+.+.+..++..+++++|.+.|+
T Consensus 259 G~r~G~~~~~~-~~~-~~l~~~~~-------~~~--~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 324 (407)
T 3nra_A 259 GYRLGVAFGSR-AII-ARMEKLQA-------IVS--LRA---AGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLR 324 (407)
T ss_dssp GGCCEEEEECH-HHH-HHHHHHHH-------HHT--SSS---CHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEcCH-HHH-HHHHHHHh-------hhc--cCC---ChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 67889988642 211 11110000 000 111 1233444444442 34567888888899999999999
Q ss_pred cCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHh-cCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHH
Q 010897 360 KTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK-FGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIE 438 (498)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~ 438 (498)
+++++.++.+. ..+++.+.++. .+.+..++.++|.+ +|+.+....... ..+..++|+++.. +.++++++++.|+
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~~--~~~~i~~~~~~l~ 399 (407)
T 3nra_A 325 GCEGVFARTPQ-AGSYLFPRLPK-LAVAPAEFVKILRLQAGVVVTPGTEFS-PHTADSVRLNFSQ--DHEAAVAAARRIV 399 (407)
T ss_dssp TSTTCBCCCCS-BSSEECCBCCC-BSSCHHHHHHHHHHHHCEECEEGGGTC-TTCTTBEEEECCS--CHHHHHHHHHHHH
T ss_pred cCCCceeccCC-eeEEEEEeCCC-CCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEeCC--CHHHHHHHHHHHH
Confidence 99778776443 44566666642 24678899999975 598876433221 2345679999874 8999999999999
Q ss_pred HHHHHHH
Q 010897 439 EVLKEIE 445 (498)
Q Consensus 439 ~~l~~l~ 445 (498)
++++.++
T Consensus 400 ~~~~~~~ 406 (407)
T 3nra_A 400 TLVERYR 406 (407)
T ss_dssp HHHHHHB
T ss_pred HHHHHhh
Confidence 9887653
No 58
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.95 E-value=2.1e-26 Score=233.90 Aligned_cols=331 Identities=12% Similarity=0.066 Sum_probs=236.8
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
+++|.+.+++.+.+......|.. ...++++++.+++++++|.+.+. ..+++|+|+++|+.+++.++.++
T Consensus 45 ~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~---~~v~~~~g~~~a~~~~~~~~~~~------ 113 (391)
T 4dq6_A 45 KAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKS---EWLIYSPGVIPAISLLINELTKA------ 113 (391)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHHHHHHHHSCT------
T ss_pred CCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcH---HHeEEcCChHHHHHHHHHHhCCC------
Confidence 45688999999888765444433 44788899999999999954322 34899999999999988877432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec---CCccccCHHHHHHHhhhCCeEEEEeeccCCcccc---cC
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE---EGYYVMNPVKAVELVDENTICVAAILGSTLTGEF---ED 220 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~---~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~---~~ 220 (498)
+++|+++.++|..+...++..|++++.+|++ ++++.+|+++|++++++ +++|++++++||||.+ ++
T Consensus 114 -------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~ 185 (391)
T 4dq6_A 114 -------NDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDE 185 (391)
T ss_dssp -------TCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHH
T ss_pred -------CCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHH
Confidence 4689999999999999999999999999987 34477999999999988 9999999999999999 77
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CC----CCeeEEEEcCCccCC-CCCCeEEEEEeCCC
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL----PLVKSINVSGHKYGL-VYAGVGWVVWRTKD 294 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~----~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~ 294 (498)
+++|.++|+++ |+++++|++|+++.. .......+ .+ ...+.+..+.||+++ ++.++|+++.++++
T Consensus 186 l~~i~~~~~~~------~~~li~De~~~~~~~---~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 256 (391)
T 4dq6_A 186 LKKLGDICLKH------NVKIISDEIHSDIIL---KKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEK 256 (391)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTTCBC---TTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHH
T ss_pred HHHHHHHHHHc------CCEEEeecccccccc---CCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHH
Confidence 89999999999 999999999988652 11111111 11 123477789999874 67789999866532
Q ss_pred CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeeCCCCc
Q 010897 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGRFEILSKDVGV 373 (498)
Q Consensus 295 ~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~ 373 (498)
.. +.+........ . ++.+.....+..+++.. +.+.+++..++..++++++.+.|++ +++++++.+ ..
T Consensus 257 ~~-~~~~~~~~~~~----~----~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~ 324 (391)
T 4dq6_A 257 DY-KLLDDAFTRID----I----KRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKP--EG 324 (391)
T ss_dssp HH-HHHHHHHHHTT----C----CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC--SB
T ss_pred HH-HHHHHHHHhhc----C----CCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCC--Cc
Confidence 21 11110000000 0 12222333344444443 3455677888888999999999988 678888754 34
Q ss_pred cEEE-EEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 374 PLVA-FSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 374 ~~v~-f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+++. +.++. .+.+..++.++|.++ |+.+....... ..+..++|++++ .+.++++++++.|++++
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 325 TYLLWVDFSA-LGLSDEELESILVQKGKVALNQGNSFG-IGGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp SSEEEEECGG-GCCCHHHHHHHHHHTTCEECEEGGGGC-TTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEhhh-cCCCHHHHHHHHHHhCCEEeeCchhhC-CCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 4444 66642 135788999999998 98875432111 123568999987 57888888888887765
No 59
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=1.3e-26 Score=235.78 Aligned_cols=338 Identities=14% Similarity=0.045 Sum_probs=238.2
Q ss_pred CCCCCcccccccC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHH
Q 010897 54 GNPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (498)
Q Consensus 54 ~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~l 132 (498)
|+..+++.+..+. ++++.+.+++.+.+......|...++..++++.+.+++.+.+|++.+. ..+++|+|+++|+.+
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~---~~v~~~~g~t~al~~ 116 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP---DQVVVTNGAKQALFN 116 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG---GGEEEESHHHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH---HHEEEecCHHHHHHH
Confidence 4444444544443 346788898888886644345444567889999999988888875322 248999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEeec
Q 010897 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG 211 (498)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~~~ 211 (498)
++.++..+ +++|++++++|.++...++..|++++.+|+++ +++.+|+++|++++++++++|+++++
T Consensus 117 ~~~~l~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 183 (389)
T 1o4s_A 117 AFMALLDP-------------GDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSP 183 (389)
T ss_dssp HHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESS
T ss_pred HHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCC
Confidence 98887332 46899999999999999999999999999874 34789999999999888999999999
Q ss_pred cCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCC-ccccC-CCCeeEEEEcCCccCC-CCCCe
Q 010897 212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EWDFR-LPLVKSINVSGHKYGL-VYAGV 285 (498)
Q Consensus 212 ~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~~~~~-~~~~dsi~~s~hK~l~-~p~g~ 285 (498)
+||||.+.| +++|.++|+++ |+++++|++|+++.. ..+.. ...+. ....|++..+.||+++ ++.++
T Consensus 184 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 255 (389)
T 1o4s_A 184 NNPTGVVYRREFLEGLVRLAKKR------NFYIISDEVYDSLVY--TDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV 255 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBC--SSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCCHhhcCCCCCcEEEEeechhhcCCcccce
Confidence 999999966 99999999999 999999999998753 11100 01111 2457899999999985 44558
Q ss_pred EEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010897 286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE 365 (498)
Q Consensus 286 g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 365 (498)
|+++.++. +.+.+....... + ++. ..+.+++++..+.. ++++..++..++++++.+.|+++ +++
T Consensus 256 G~l~~~~~--~~~~l~~~~~~~-------~--~~~---~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 319 (389)
T 1o4s_A 256 GYLISSEK--VATAVSKIQSHT-------T--SCI---NTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVK 319 (389)
T ss_dssp EEEECCHH--HHHHHHHHHHHH-------T--CSC---CHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred EEEEeCHH--HHHHHHHHhhhc-------c--cCC---CHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCe
Confidence 99986431 111111000000 0 111 22344555555543 36777888889999999999988 477
Q ss_pred EeeCCCCccEEEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+..+. ...++.+.++ .+..++.++|. ++|+.+........ .+++|+++.. +.++++++++.|++++
T Consensus 320 ~~~~~-~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~Ris~~~--~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 320 FVEPE-GAFYLFFKVR----GDDVKFCERLLEEKKVALVPGSAFLK---PGFVRLSFAT--SIERLTEALDRIEDFL 386 (389)
T ss_dssp CCCCS-BSSEEEEECS----SCHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred eecCC-cceEEEEeCC----CCHHHHHHHHHHHCCEEEeCchhcCC---CCeEEEEEeC--CHHHHHHHHHHHHHHH
Confidence 65432 3334555663 46778999997 88988754322111 2479999873 7888888877777665
No 60
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.95 E-value=7.4e-26 Score=233.34 Aligned_cols=354 Identities=16% Similarity=0.104 Sum_probs=236.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCc-CCc---chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKNYVDMD-EYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n~~~~~-~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~ 141 (498)
.++++.+.+++.+.+.....++. .++ ...+...++++++++++|.+.+ .+++|+|+++|+.+++.++.+.+
T Consensus 28 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-----~v~~~~g~t~a~~~~~~~~~~~~ 102 (432)
T 3a9z_A 28 TPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ-----DIIFTSGGTESNNLVIHSTVRCF 102 (432)
T ss_dssp CCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG-----GEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC-----eEEEeCChHHHHHHHHHHHHhhh
Confidence 35678888888887765332222 222 4556677899999999998642 39999999999999998886433
Q ss_pred HHHHHhcCCC-------C-CCcEEEEcCCchhHHHHHH----HHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEe
Q 010897 142 QQKRKEQGKP-------Y-DKPNIVTGANVQVCWEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI 209 (498)
Q Consensus 142 ~~~~~~~g~~-------~-~~~~Iv~s~~~h~~~~~~~----~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~ 209 (498)
.......|.. + ..+.|+++...|.+..... +..|++++.+|++++++.+|+++|+++++++|++|+++
T Consensus 103 ~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 182 (432)
T 3a9z_A 103 HEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIM 182 (432)
T ss_dssp HHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECC
T ss_pred hhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEE
Confidence 2110011210 0 1147888899999875544 44699999999975347899999999999889999999
Q ss_pred eccCCcccccCHHHHHHHHHHhhcccCCC----------ceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccC
Q 010897 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWD----------TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG 279 (498)
Q Consensus 210 ~~~t~tG~~~~l~~I~~la~~~~~~~~~~----------~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l 279 (498)
+++|+||.+.|+++|.++|+++ + +++|+|++|+.+..++ ++...+.|+++.|+||++
T Consensus 183 ~~~nptG~~~~~~~i~~l~~~~------~~~~~~~~~~~~~livDea~~~~~~~~-------~~~~~~~d~~~~s~~K~~ 249 (432)
T 3a9z_A 183 LANNETGVIMPISEISRRIKAL------NQIRAASGLPRVLVHTDAAQALGKRRV-------DVEDLGVDFLTIVGHKFY 249 (432)
T ss_dssp SBCTTTCBBCCHHHHHHHHHHH------HHHHHHHTCCCCEEEEECTTTTTTSCC-------CHHHHCCSEEEEEGGGTT
T ss_pred CcccCcccccCHHHHHHHHHhc------CcccccccCCceEEEEEchhhhCCccc-------ChhhcCCCEEEEehhHhc
Confidence 9999999999999999999999 7 9999999997654221 111114788899999986
Q ss_pred CCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh
Q 010897 280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (498)
Q Consensus 280 ~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 359 (498)
+|. +|+++++++... . .....+.++........++.+.....++.+++..+ .+++.++.++..+++++|.+.|+
T Consensus 250 -g~~-~G~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~ 323 (432)
T 3a9z_A 250 -GPR-IGALYVRGVGKL-T--PLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLE 323 (432)
T ss_dssp -CCS-CEEEEETTBTTT-B--CCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCc-ceEEEEcccccc-C--CcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHH
Confidence 454 999998754211 1 11222222211000112444444455555566554 34788899999999999999998
Q ss_pred cCCCeEEe--eCC---CC-ccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeec--CCC-----------CCC----CeeE
Q 010897 360 KTGRFEIL--SKD---VG-VPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYT--MPA-----------NAE----NVAV 416 (498)
Q Consensus 360 ~~~~~~~~--~~~---~~-~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~--~~~-----------~~~----~~~~ 416 (498)
+++++++. .+. .. ..+++|.+++. +.+..++.+.|. |+.+.... .+. ... ...+
T Consensus 324 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~--~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 400 (432)
T 3a9z_A 324 AEFGKRIHLNSRFPGVERLPNTCNFSIQGS-QLRGYMVLAQCQ--TLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNA 400 (432)
T ss_dssp HHHGGGEEESSCCTTCCBCTTEEEEEECST-TCCHHHHHHHCS--SEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTE
T ss_pred hccCCcEEEeCCCCcccCCCCEEEEEeCCC-CCcHHHHHHHhc--CeEEeccccccCCCCCCccHHHHhcCCCccccCce
Confidence 86444332 220 12 34788888542 235556666652 44332211 010 000 1268
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 417 LRVVVREDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 417 lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
+|++++..+|.++++++++.|+++++++++
T Consensus 401 iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 401 VRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999998888999999999999999887654
No 61
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=9.1e-27 Score=238.59 Aligned_cols=340 Identities=14% Similarity=0.031 Sum_probs=240.4
Q ss_pred CcccccccC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHH
Q 010897 58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA 136 (498)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a 136 (498)
+++.+..+. ++++.+.+++ +.+......|...++..++++++.+++.+.+|++.+. ..+++|+|+++|+.+++.+
T Consensus 46 i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~t~a~~~~~~~ 121 (409)
T 2gb3_A 46 HHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP---ENVLVTNGGSEAILFSFAV 121 (409)
T ss_dssp EECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG---GGEEEESHHHHHHHHHHHH
T ss_pred EeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH---HHEEEeCCHHHHHHHHHHH
Confidence 334443333 3456788888 8886644445555567889999999998888876432 3489999999999999888
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEeeccCCc
Q 010897 137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT 215 (498)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~~~~t~t 215 (498)
+.++ +++|++++++|.++..+++..|++++.+|+++ +++.+ +++|++++++++++|++++++|||
T Consensus 122 ~~~~-------------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~npt 187 (409)
T 2gb3_A 122 IANP-------------GDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPT 187 (409)
T ss_dssp HCCT-------------TCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTT
T ss_pred hCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCC
Confidence 7332 46899999999999999999999999999874 34556 889999998889999999999999
Q ss_pred cccc---CHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCC-CCCCeEEEEE
Q 010897 216 GEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVW 290 (498)
Q Consensus 216 G~~~---~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~ 290 (498)
|.+. ++++|.++|+++ |+++++|++|+++.. ..+.... + .....|++..+.||+++ ++.++|+++.
T Consensus 188 G~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~--~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 258 (409)
T 2gb3_A 188 GVVYGKDEMRYLVEIAERH------GLFLIVDEVYSEIVF--RGEFASA-LSIESDKVVVIDSVSKKFSACGARVGCLIT 258 (409)
T ss_dssp CCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--SSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHc------CCEEEEECccccccc--CCCCCCc-cccCCCCEEEEecchhccCCccceEEEEEE
Confidence 9984 589999999999 999999999998752 1111111 1 23356888999999985 4445899986
Q ss_pred eCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE-e
Q 010897 291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEGYKNIMENCMGNARALREGLEKTGRFEI-L 367 (498)
Q Consensus 291 ~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~-~ 367 (498)
++++.. +.+.....+. + +. ..+.++++...+ +.+.+++..++..++++++.+.|+++ ++++ .
T Consensus 259 ~~~~l~-~~l~~~~~~~-------~---~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 323 (409)
T 2gb3_A 259 RNEELI-SHAMKLAQGR-------L---AP---PLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFT 323 (409)
T ss_dssp SCHHHH-HHHHHHHHHS-------C---CC---CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBC
T ss_pred CcHHHH-HHHHHHHhcc-------C---CC---CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-Cceeee
Confidence 542221 1111000000 0 11 122233333333 56677888888999999999999988 4776 4
Q ss_pred eCCCCccEEEEEecCCCCCCHHHHHHHHHhc------CcEeeeecCCCC--CCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 368 SKDVGVPLVAFSLKDSSAHTVFEISEGLRKF------GWIVPAYTMPAN--AENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~------G~~v~~~~~~~~--~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
.+. ...++.++++ +.+..++.++|.++ |+.+........ ..+..++|+++. .+.++++++++.|++
T Consensus 324 ~~~-~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~ 397 (409)
T 2gb3_A 324 KPS-GAFYITAELP---VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLME 397 (409)
T ss_dssp CCS-BSSEEEEECS---SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CCC-eeEEEEEEeC---CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHH
Confidence 332 3344445764 35778999999887 988754321110 123568999987 689999999999999
Q ss_pred HHHHHH
Q 010897 440 VLKEIE 445 (498)
Q Consensus 440 ~l~~l~ 445 (498)
+++.++
T Consensus 398 ~l~~~~ 403 (409)
T 2gb3_A 398 GLKMFC 403 (409)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988764
No 62
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.95 E-value=2.2e-26 Score=230.76 Aligned_cols=315 Identities=14% Similarity=0.064 Sum_probs=228.6
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.+..... |+. ....++++++++++|.+. ..+++|+|+++|+.+++.++.++
T Consensus 29 ~~~~~v~~a~~~~~~~~~~----y~~--~~~~~l~~~la~~~~~~~-----~~i~~~~g~~~a~~~~~~~l~~~------ 91 (354)
T 3ly1_A 29 GMSPKAQAAARDAVVKANR----YAK--NEILMLGNKLAAHHQVEA-----PSILLTAGSSEGIRAAIEAYASL------ 91 (354)
T ss_dssp CCCHHHHHHHHHTGGGTTS----CCH--HHHHHHHHHHHHHTTSCG-----GGEEEESHHHHHHHHHHHHHCCT------
T ss_pred CCCHHHHHHHHHHHhhCcC----CCC--CchHHHHHHHHHHhCCCh-----HHEEEeCChHHHHHHHHHHHhCC------
Confidence 4678899999888875222 221 223467777999999764 24999999999999988877432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhh--hCCeEEEEeeccCCcccccCHHHH
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGEFEDVKLL 224 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~--~~t~~v~~~~~~t~tG~~~~l~~I 224 (498)
+++|+++.++|..+...++..|++++.+|++++ +.+|+++|+++++ +++++|++++++||||.+.|++++
T Consensus 92 -------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l 163 (354)
T 3ly1_A 92 -------EAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVI 163 (354)
T ss_dssp -------TCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHH
T ss_pred -------CCeEEECCCCchHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHH
Confidence 468999999999999999999999999999865 8899999999998 789999999999999999999999
Q ss_pred HHHHHH--hhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCccc
Q 010897 225 HDLLTK--KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 225 ~~la~~--~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~ 300 (498)
.++++. + |+++++|++|+++...-..+...... .....+.+..|.+|+++ ++.++|+++.+. +.. +.+
T Consensus 164 ~~l~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~-~~~ 235 (354)
T 3ly1_A 164 EPWIASKPA------NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHP-TVI-ALM 235 (354)
T ss_dssp HHHHHTCCT------TEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCH-HHH-HHH
T ss_pred HHHHHhCCC------CeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCH-HHH-HHH
Confidence 999888 7 99999999999865210000110011 12145677889999885 677889988632 211 111
Q ss_pred ccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEE
Q 010897 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFS 379 (498)
Q Consensus 301 ~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~ 379 (498)
.... .. ++.+ .+.+.++...+. .+.+.+..++..++++++.+.|++++ +++..+ ..+++.+.
T Consensus 236 ~~~~-------~~----~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~--~~~~~~~~ 298 (354)
T 3ly1_A 236 GRYV-------AG----EKIN---FSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLK-LPYLPS--EGNFVFHQ 298 (354)
T ss_dssp GGGT-------TC----SCCC---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC--CSSEEEEE
T ss_pred HHhc-------CC----CCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeECCC--CceEEEEE
Confidence 1100 01 1222 223333333333 25577888888999999999999884 776633 56777777
Q ss_pred ecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 380 LKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 380 ~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
++. +..++.+.|.++|+.+. ...+ ....++|++++ +.++++++++.|+++++
T Consensus 299 ~~~----~~~~~~~~l~~~gi~v~-g~~~---~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 299 LVV----PLKDYQTHMADAGVLIG-RAFP---PADNWCRISLG---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp CSS----CHHHHHHHHHHTTEECC-CCCT---TCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CCC----CHHHHHHHHHHCCEEEe-ecCC---CCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 743 67899999999998876 3222 24567999986 78999999999998875
No 63
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=4.8e-26 Score=233.37 Aligned_cols=332 Identities=15% Similarity=0.042 Sum_probs=231.5
Q ss_pred CChHHHHHHHHHHhccCCCCCcC--C-c-chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDE--Y-P-VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~--~-~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~ 142 (498)
++++.+.+++.+.+...+..+.. + + +......++++++++++|.+.+ .+++|+|+++++.+++.++.. +.
T Consensus 39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-----~v~~~~g~t~al~~al~~~~~-~~ 112 (416)
T 1qz9_A 39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-----EVVVTDTTSINLFKVLSAALR-VQ 112 (416)
T ss_dssp CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT-----SEEECSCHHHHHHHHHHHHHH-HH
T ss_pred CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcc-----cEEEeCChhHHHHHHHHhhcc-cc
Confidence 45567888888877653222211 1 1 2235556788999999998642 388899999999888877642 11
Q ss_pred HHHHhcCCCCCCcEEEEcCCchhHHHHH----HHHc--CCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcc
Q 010897 143 QKRKEQGKPYDKPNIVTGANVQVCWEKF----ARYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG 216 (498)
Q Consensus 143 ~~~~~~g~~~~~~~Iv~s~~~h~~~~~~----~~~~--g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG 216 (498)
.. ...| +..|+++..+|.++..+ ++.. |++++.+++ +++|+++|+++|++|++++++|+||
T Consensus 113 ~~-~~~g----d~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~~~l~~~i~~~~~~v~~~~~~nptG 179 (416)
T 1qz9_A 113 AT-RSPE----RRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--------PEELPQAIDQDTAVVMLTHVNYKTG 179 (416)
T ss_dssp HH-HSTT----CCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--------GGGHHHHCSTTEEEEEEESBCTTTC
T ss_pred cc-cCCC----CcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--------HHHHHHHhCCCceEEEEeccccCcc
Confidence 00 0011 22577777899876554 3334 888888875 6788889988899999999999999
Q ss_pred cccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCe-EEEEEeCCCC
Q 010897 217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV-GWVVWRTKDD 295 (498)
Q Consensus 217 ~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~-g~~~~~~~~~ 295 (498)
.+.|+++|.++|+++ |+++|+|+||+.+..++ ++...++|++++++||++++++|+ |+++++++ .
T Consensus 180 ~~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~~-------~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~-~ 245 (416)
T 1qz9_A 180 YMHDMQALTALSHEC------GALAIWDLAHSAGAVPV-------DLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ-L 245 (416)
T ss_dssp BBCCHHHHHHHHHHH------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT-T
T ss_pred cccCHHHHHHHHHHc------CCEEEEEccccccCcCC-------ChhhcCCCEEEecCcccCCCCCCCeEEEEECHH-H
Confidence 999999999999999 99999999998543221 111114789999999999888888 99998654 2
Q ss_pred CCcccccccCccCCCC-----C-------Ccc-ccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 010897 296 LPDELVFHINYLGSDQ-----P-------TFT-LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT- 361 (498)
Q Consensus 296 l~~~~~~~~~yl~~~~-----~-------~~~-l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~- 361 (498)
..........|.+... . ... ..++.+...+.++.+++..+..+++.++.++..++++++.+.|+++
T Consensus 246 ~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 325 (416)
T 1qz9_A 246 CDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRC 325 (416)
T ss_dssp TTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2111111111111100 0 001 1234555566667778877766678889999999999999999986
Q ss_pred C--CeEEeeCCC---CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeec-CCCCHHHHHHHHH
Q 010897 362 G--RFEILSKDV---GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVR-EDFSRSLVERLIS 435 (498)
Q Consensus 362 ~--~~~~~~~~~---~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~-~~~t~~~~~~l~~ 435 (498)
+ +++++.+.. ..++++|+++ +..++.++|.++|+.+.. .+..++|+++. ..++.++++++++
T Consensus 326 ~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~gi~~~~-------~~~~~lRis~~~~~~t~~~i~~~~~ 393 (416)
T 1qz9_A 326 AAHELTLVTPREHAKRGSHVSFEHP-----EGYAVIQALIDRGVIGDY-------REPRIMRFGFTPLYTTFTEVWDAVQ 393 (416)
T ss_dssp TTSCCEECSCSSGGGBCSEEEEECT-----THHHHHHHHHTTTEECEE-------ETTTEEEEECCTTTCCHHHHHHHHH
T ss_pred cCCCeEEeCCCCHHHcCCEEEEecC-----CHHHHHHHHHhCCcEecc-------CCCCeEEEeCcccCCCHHHHHHHHH
Confidence 5 688875531 3578888874 256899999999987532 12457999997 3789999999999
Q ss_pred HHHHHHHH
Q 010897 436 HIEEVLKE 443 (498)
Q Consensus 436 ~l~~~l~~ 443 (498)
.|+++++.
T Consensus 394 ~l~~~~~~ 401 (416)
T 1qz9_A 394 ILGEILDR 401 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998865
No 64
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.95 E-value=2.6e-26 Score=240.26 Aligned_cols=367 Identities=13% Similarity=0.041 Sum_probs=246.0
Q ss_pred HHHHHHHHhhhccCCCCCcccccccCCChHHHHHHHHHHhccCCC-------CCcCCcchHHHHHHHHHHHHHHcCCCCC
Q 010897 41 AAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYV-------DMDEYPVTTELQNRCVNMIAHLFNTPVA 113 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~n~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~ 113 (498)
++++.+.+..... ...++|.... .++++.+.+++.+.+...+. .|...+...++++.+++++++++|.+.+
T Consensus 31 ~~~~~~~~~~~~~-~~~i~L~a~e-~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~ 108 (483)
T 1rv3_A 31 EVYDIIKKESNRQ-RVGLELIASE-NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ 108 (483)
T ss_dssp HHHHHHHHHHHHH-HSSEECCTTC-CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHh-hcCeEEEcCC-CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcc
Confidence 4555554433221 1233443322 24678888888877764321 1223345678999999999999999742
Q ss_pred CCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHH--------HHHHcCCeeEEEEe--
Q 010897 114 DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK--------FARYFEVELKEVKL-- 183 (498)
Q Consensus 114 ~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~--------~~~~~g~~~~~v~~-- 183 (498)
+- ...+.+++|+ ++++.++.++.++ +++|+++++.|.++.. .++..|..++.+++
T Consensus 109 ~~-~~~V~~~sGs-~an~~~~~all~p-------------GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~ 173 (483)
T 1rv3_A 109 CW-GVNVQPYSGS-PANFAVYTALVEP-------------HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 173 (483)
T ss_dssp TE-EEECCCSSHH-HHHHHHHHHHTCT-------------TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred cC-ceEEEECCcH-HHHHHHHHHhcCC-------------CCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence 10 0125555555 8888777776432 5799999988876643 23445544566655
Q ss_pred cCCccccCHHHHHHHhh-hCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc
Q 010897 184 EEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD 262 (498)
Q Consensus 184 ~~~~~~~d~~~L~~~i~-~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~ 262 (498)
+++++.+|+++|+++++ .+|++|++ +++|++ .+.|+++|.++|+++ |+++++|+||+.+..+.. .....
T Consensus 174 ~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~------g~~livD~ah~~g~~~~~--~~~~p 243 (483)
T 1rv3_A 174 NPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADEN------GAYLMADMAHISGLVVAG--VVPSP 243 (483)
T ss_dssp CTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHT------TCEEEEECTTTHHHHHHT--SSCCG
T ss_pred ccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHc------CCEEEEEccchhcccccC--CCCCC
Confidence 64568999999999998 78999888 788887 889999999999999 999999999874432111 11111
Q ss_pred cCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccc----cCc-----cCCCCCCccccCCCchHHHHHHHHHHH
Q 010897 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH----INY-----LGSDQPTFTLNFSKGSSQIIAQYYQFI 333 (498)
Q Consensus 263 ~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~----~~y-----l~~~~~~~~l~~sr~~~~~~a~~~~l~ 333 (498)
+ +++|+++.++||++.+|.| |++++++... . +... ..| +... ......++.....+.++.+++.
T Consensus 244 ~--~~~div~~s~~K~l~Gprg-G~i~~~~~~~--~-~~~~~g~~~~y~~~~~~~~~-~~~~~~g~~~~~~iaal~~Al~ 316 (483)
T 1rv3_A 244 F--EHCHVVTTTTHKTLRGCRA-GMIFYRRGVR--S-VDPKTGKEILYNLESLINSA-VFPGLQGGPHNHAIAGVAVALK 316 (483)
T ss_dssp G--GTCSEEEEESSGGGCCCSC-EEEEEECSBC--C--------CCBCCHHHHHHHH-HTTTTCCSCCHHHHHHHHHHHH
T ss_pred C--CCCcEEEecCcccCCCCCc-eEEEEcchhh--h-hccccCcchhhHHHHHhhhh-cCCcccCCccHHHHHHHHHHHH
Confidence 1 2589999999999988887 9999886421 0 0000 000 0000 0001134555556667777887
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC--C
Q 010897 334 RLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN--A 411 (498)
Q Consensus 334 ~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~--~ 411 (498)
.+..++++++.++..+++++|.+.|+++ +++++.+.....++.+.+.. .+.+..++.+.|.+.|+.+.....|.. .
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~-~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~ 394 (483)
T 1rv3_A 317 QAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRS-KGTDGGRAEKVLEACSIACNKNTCPGDKSA 394 (483)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGG-GTCCHHHHHHHHHHTTEECEEECCSSCSCT
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccC-CCCCHHHHHHHHHhCCcEEecCCCCCCCcC
Confidence 7766788999999999999999999998 59988653223455666642 246778899999999988763332321 2
Q ss_pred CCeeEEEEeecCCCC----HHHHHHHHHHHHHHHHH
Q 010897 412 ENVAVLRVVVREDFS----RSLVERLISHIEEVLKE 443 (498)
Q Consensus 412 ~~~~~lRv~v~~~~t----~~~~~~l~~~l~~~l~~ 443 (498)
.+...+|+++...+| .++++++++.|+++++.
T Consensus 395 ~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 395 LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 345689999976556 89999999999998865
No 65
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.95 E-value=2.6e-26 Score=233.38 Aligned_cols=337 Identities=12% Similarity=0.043 Sum_probs=236.3
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcc-eeeecChhHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV-GVGTVGSSEAIMLAGLAFKRKWQQKR 145 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~-~~~t~g~sea~~la~~a~~~~~~~~~ 145 (498)
++++.+.+++.+.++.....|....+..++++.+.+++.+.+|.+.+. .. +++|+|+++|+.+++.++.++
T Consensus 39 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~~v~~~~g~~~a~~~~~~~~~~~----- 110 (389)
T 1gd9_A 39 DTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADP---KTEIMVLLGANQAFLMGLSAFLKD----- 110 (389)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT---TTSEEEESSTTHHHHHHHTTTCCT-----
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC---CCeEEEcCChHHHHHHHHHHhCCC-----
Confidence 356788888888876544344444567889999999988888965322 24 889999999999888776321
Q ss_pred HhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEeeccCCccccc---CH
Q 010897 146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFE---DV 221 (498)
Q Consensus 146 ~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~---~l 221 (498)
+++|++++++|.++...++..|++++.+|+++ +++.+|+++|++++++++++|++++++||||.+. ++
T Consensus 111 --------gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l 182 (389)
T 1gd9_A 111 --------GEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDL 182 (389)
T ss_dssp --------TCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred --------CCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHH
Confidence 46899999999999999999999999999874 3478999999999988899999999999999996 59
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCccccccccc-CCCCcccc-CCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCc
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPD 298 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~-~~~~~~~~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~ 298 (498)
++|.++|+++ |+++++|++|+++...-. .... ..+ +....|++..+.||+++ ++.++|+++.++ +.. +
T Consensus 183 ~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~-~ 253 (389)
T 1gd9_A 183 EEIADFVVEH------DLIVISDEVYEHFIYDDARHYSI-ASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS-WII-E 253 (389)
T ss_dssp HHHHHHHHHT------TCEEEEECTTTTCBCTTCCCCCG-GGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH-HHH-H
T ss_pred HHHHHHHHHc------CCEEEEehhhhhcccCCCCCCCH-hhccCCCCCEEEEecChhhcCCcccceEEEEECH-HHH-H
Confidence 9999999999 999999999998753100 0011 111 12357899999999875 445689998653 211 1
Q ss_pred ccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEE
Q 010897 299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE--GYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376 (498)
Q Consensus 299 ~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~--g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v 376 (498)
.+.....+. . ++.+.....+...++.. +.+ .+++..++..++++++.+.|+++ ++++..+. ...++
T Consensus 254 ~l~~~~~~~-----~----~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~ 321 (389)
T 1gd9_A 254 RMVKFQMYN-----A----TCPVTFIQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPK-GAFYI 321 (389)
T ss_dssp HHHHHHTTT-----T----CSCCHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCC-BTTEE
T ss_pred HHHHHHhhh-----c----cCCCHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCC-eeeEE
Confidence 111110100 0 12222222223333322 233 56778888889999999999998 47766432 33345
Q ss_pred EEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 377 AFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.++++. .+.+..++.++|. ++|+.+....... ..+..++|+++.. +.++++++++.|++++++.
T Consensus 322 ~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 322 FPRIRD-TGLTSKKFSELMLKEARVAVVPGSAFG-KAGEGYVRISYAT--AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp CCBCGG-GTCCHHHHHHHHHHHTCEECEEGGGGC-GGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred EEeccC-CCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 556642 1357789999998 8998875432211 1234579999874 8889999998888887653
No 66
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.95 E-value=2.1e-26 Score=235.92 Aligned_cols=336 Identities=12% Similarity=0.056 Sum_probs=233.5
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+.+ ..+++|+|+++|+.+++.++.++
T Consensus 38 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~--~~v~~t~g~~~al~~~~~~~~~~------ 109 (411)
T 2o0r_A 38 DGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPE--TEVLVTVGATEAIAAAVLGLVEP------ 109 (411)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTT--TSEEEEEHHHHHHHHHHHHHCCT------
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCC--ceEEEeCCHHHHHHHHHHHhcCC------
Confidence 3567888888888865333344445678899999999999889764321 13899999999999988877432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCC--ccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---H
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---V 221 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l 221 (498)
+++|+++.++|.++...++..|++++.+|++++ ++.+|+++|++++++++++|++++++||||.+.| +
T Consensus 110 -------gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l 182 (411)
T 2o0r_A 110 -------GSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATEL 182 (411)
T ss_dssp -------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred -------CCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHH
Confidence 468999999999999999999999999998753 5789999999999988999999999999999966 5
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--ccc-CCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCC
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLP 297 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~ 297 (498)
++|.++|+++ |+++++|++|+++.. ...... ..+ .....|++..+.||+++ ++.++|+++.+. +..
T Consensus 183 ~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~- 252 (411)
T 2o0r_A 183 AAIAEIAVAA------NLVVITDEVYEHLVF--DHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPA-ELI- 252 (411)
T ss_dssp HHHHHHHHHT------TCEEEEECTTTTCBC--TTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCH-HHH-
T ss_pred HHHHHHHHHc------CCEEEEEcccccccc--CCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCH-HHH-
Confidence 8999999999 999999999998752 111111 111 12357899999999875 445599998642 221
Q ss_pred cccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEE
Q 010897 298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVA 377 (498)
Q Consensus 298 ~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~ 377 (498)
+.+.....+. + ++.+.....+...+|.. +.+.+++..++..++++++.+.|++. ++++..+. ...++.
T Consensus 253 ~~l~~~~~~~-------~--~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~g~~~~ 320 (411)
T 2o0r_A 253 AGVRAAKQYL-------S--YVGGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSY-GTYFLC 320 (411)
T ss_dssp HHHHHHHHHH-------T--SCCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCC-BSSEEE
T ss_pred HHHHHHHhhc-------c--CCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCC-eeEEEE
Confidence 1111101110 0 11112233334444443 35667788888889999999999988 48876442 344677
Q ss_pred EEecCCCCCCHHHHHHHHH-hcCcEeeeecCC-CCC---------CCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 378 FSLKDSSAHTVFEISEGLR-KFGWIVPAYTMP-ANA---------ENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 378 f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~-~~~---------~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
++++.....+..++.++|. ++|+.+...... ... .+..++|+++.. +.++++++++.|++++
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~~~~l~~~~ 393 (411)
T 2o0r_A 321 ADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK--RDDTLDEAIRRLSVLA 393 (411)
T ss_dssp EECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS--CHHHHHHHHHHHGGGG
T ss_pred EecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 7875311246778999886 679887543211 110 135679999863 6777776666665544
No 67
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.95 E-value=1.6e-26 Score=233.11 Aligned_cols=318 Identities=13% Similarity=0.117 Sum_probs=225.4
Q ss_pred CChHHHHHHHHHHhcc-CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~ 145 (498)
++++.+.+++.+.+.. ....|.. ++.. ++++++++++|.+.. ..+++|+|+++|+.+++.++.++
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~~y~~-~~~~----~l~~~la~~~g~~~~----~~i~~~~g~t~a~~~~~~~~~~~----- 108 (367)
T 3euc_A 43 RLPPALRSELAARLGEVALNRYPV-PSSE----ALRAKLKEVMQVPAG----MEVLLGNGSDEIISMLALAAARP----- 108 (367)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSCC-CCHH----HHHHHHHHHHTCCTT----CEEEEEEHHHHHHHHHHHHTCCT-----
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCC-CcHH----HHHHHHHHHhCCCCc----ceEEEcCCHHHHHHHHHHHHcCC-----
Confidence 4567888888887764 2222222 3333 556668888898421 24999999999999888876332
Q ss_pred HhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccC---H
Q 010897 146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED---V 221 (498)
Q Consensus 146 ~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~---l 221 (498)
+++|+++.++|..+...++..|++++.+|++++ +.+|+++|++++++ +|++|++++++||||.+.| +
T Consensus 109 --------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l 179 (367)
T 3euc_A 109 --------GAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRAD-FTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADM 179 (367)
T ss_dssp --------TCEEEEEESCSCCSCHHHHTTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHH
T ss_pred --------CCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCC-CCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHH
Confidence 468999999999999999999999999999874 88999999999998 8999999999999999954 5
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccc
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~ 301 (498)
++|.++|++++. |+++++|++|+++.. ......+.....+.+..+.+|++.++.++|+++.+. +.. +.+.
T Consensus 180 ~~i~~~~~~~~~----~~~li~De~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~-~~~-~~~~ 249 (367)
T 3euc_A 180 EAIVRAAQGSVC----RSLVVVDEAYQPFAQ----ESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDP-QWL-EQLD 249 (367)
T ss_dssp HHHHHHTBTTSC----BCEEEEECTTCCSSS----CCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECH-HHH-HHHG
T ss_pred HHHHHhhhhcCC----CcEEEEeCcchhhcc----cchHHHHhhCCCEEEEecchhhcccccCceeeeeCH-HHH-HHHH
Confidence 566666666611 489999999997641 111112223345677788999977778899998742 221 1111
Q ss_pred cccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEec
Q 010897 302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381 (498)
Q Consensus 302 ~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (498)
. .... ++.+.....+...+++. .+.+.+..++..++++++.+.|++++++++..+ ..+++.++++
T Consensus 250 ~-------~~~~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~~~~~~~~~ 314 (367)
T 3euc_A 250 K-------VRPP----YNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS--AANFLLARVP 314 (367)
T ss_dssp G-------GCCS----SCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC--SSSEEEEECS
T ss_pred H-------hCCC----CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC--CCeEEEEECC
Confidence 0 0011 12222333333333332 455688888999999999999999977886533 5677777774
Q ss_pred CCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 382 DSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 382 ~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+..++.+.|.++|+.+....... .....++|++++ +.++++++++.|++++
T Consensus 315 -----~~~~l~~~l~~~gi~v~~~~~~~-~~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 315 -----DAAQTFDRLLARKVLIKNVSKMH-PLLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp -----CHHHHHHHHHTTTEECEECGGGC-GGGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHCCeEEEECCccC-CCCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 56789999999999876433211 123568999987 8899999999998775
No 68
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=3.5e-26 Score=232.37 Aligned_cols=332 Identities=10% Similarity=0.035 Sum_probs=225.6
Q ss_pred hHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHh
Q 010897 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE 147 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~~~~~ 147 (498)
.+++.+++.+.++.+...+...+...+ +++.+++++|.+. .+++++|++|+.+++.++ ..
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~----l~~~la~~~~~~~-------~i~~~sGt~al~~~l~~l~~~-------- 76 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNS----FEREFAAHHGAAH-------ALAVTNGTHALELALQVMGVG-------- 76 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHH----HHHHHHHHTTCSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHH----HHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence 477888888888764332333344444 4455888888762 444445599999988876 22
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHH
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL 227 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~l 227 (498)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|+++++++|++|+ ++|+||.+.|+++|.++
T Consensus 77 -----~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l 148 (388)
T 1b9h_A 77 -----PGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKI 148 (388)
T ss_dssp -----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHH
T ss_pred -----CcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHH
Confidence 1468999999999999999999999999999875688999999999988888775 89999999999999999
Q ss_pred HHHhhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCC--CCccccccc
Q 010897 228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD--LPDELVFHI 304 (498)
Q Consensus 228 a~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~--l~~~~~~~~ 304 (498)
|+++ |++||+|++|+.+..+ ... ++ .+..+++.+++.||++.++ .+|+++.+++.. + ..+....
T Consensus 149 a~~~------~~~li~D~a~~~g~~~--~~~---~~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~-~~~~~~~ 215 (388)
T 1b9h_A 149 SADT------GVPLLQDAAHAHGARW--QGK---RVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKY-ETAFLRH 215 (388)
T ss_dssp HHHH------TCCBCEECTTCTTCEE--TTE---EGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHH-HHHHHHT
T ss_pred HHHc------CCEEEEecchhcCCcc--CCe---ecccccceEEEEccCCCcccCC-CeEEEEECCHHHHHH-HHHHHHH
Confidence 9999 9999999999865321 110 11 1224788888999998765 568888765432 2 1111000
Q ss_pred CccCCCC--CCc--cccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC-----CCccE
Q 010897 305 NYLGSDQ--PTF--TLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD-----VGVPL 375 (498)
Q Consensus 305 ~yl~~~~--~~~--~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----~~~~~ 375 (498)
.+ +... ..+ ...++......+..++.+.. .+.+.+..++..++++++.+.|++++++++..+. ...++
T Consensus 216 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
T 1b9h_A 216 SC-GRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYM 292 (388)
T ss_dssp BT-TCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSE
T ss_pred hC-CCCccCccceeecccccCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEE
Confidence 10 1000 000 00011100111122222222 2345667788888999999999999778877531 23578
Q ss_pred EEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCC--------------------------CeeEEEEeecCCC-CHH
Q 010897 376 VAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAE--------------------------NVAVLRVVVREDF-SRS 428 (498)
Q Consensus 376 v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~--------------------------~~~~lRv~v~~~~-t~~ 428 (498)
+.|++++....+..++.++|.++|+.++.+..|.... ....+|++++..+ |.+
T Consensus 293 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~e 372 (388)
T 1b9h_A 293 AMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEP 372 (388)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHH
T ss_pred EEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHH
Confidence 8888853211256789999999999886543321100 0247999999988 999
Q ss_pred HHHHHHHHHHHHHHH
Q 010897 429 LVERLISHIEEVLKE 443 (498)
Q Consensus 429 ~~~~l~~~l~~~l~~ 443 (498)
+++++++.|+++++.
T Consensus 373 di~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 373 ELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988753
No 69
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.95 E-value=1.4e-25 Score=230.00 Aligned_cols=342 Identities=12% Similarity=0.044 Sum_probs=237.4
Q ss_pred CCChHHHHHHHHHHhccCC-CCCcCCcchHHHHHHHHHHHHHH------cCCCCCCCCCcceeeecChhHHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHL------FNTPVADDKTAVGVGTVGSSEAIMLAGLAFK 138 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n~-~~~~~~~~~~~le~~~~~~la~l------~g~~~~~~~~~~~~~t~g~sea~~la~~a~~ 138 (498)
.++++.+.+++.+.+.... ..|....+..++++.+.+++.+. .|++.+. ..+++|+|+++|+.+++.++.
T Consensus 49 ~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~---~~v~~~~g~~~al~~~~~~l~ 125 (416)
T 1bw0_A 49 LLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVK---DNVVLCSGGSHGILMAITAIC 125 (416)
T ss_dssp SCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG---GGEEEESHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCc---ceEEEeCChHHHHHHHHHHhC
Confidence 3556888888888876532 23444446678888877777732 2333211 248999999999998888874
Q ss_pred HHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCC-ccccCHHHHHHHhhhCCeEEEEeeccCCccc
Q 010897 139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGE 217 (498)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~ 217 (498)
++ +++|+++.++|..+..+++..|++++.++++++ ++.+|+++|++++++++++|++++|+||||.
T Consensus 126 ~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~ 192 (416)
T 1bw0_A 126 DA-------------GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 192 (416)
T ss_dssp CT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred CC-------------CCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCc
Confidence 32 468999999999999999999999999998743 4789999999999988999999999999999
Q ss_pred ccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCC----CCcc--ccCCCCeeEEEEcCCccC-CCCCCeEE
Q 010897 218 FED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP----DLEW--DFRLPLVKSINVSGHKYG-LVYAGVGW 287 (498)
Q Consensus 218 ~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~----~~~~--~~~~~~~dsi~~s~hK~l-~~p~g~g~ 287 (498)
+.| +++|.++|+++ |++|++|++|+++.. ... .... .+.....+.+..+.+|++ .++.++||
T Consensus 193 ~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~ 264 (416)
T 1bw0_A 193 NFSRKHVEDIVRLAEEL------RLPLFSDEIYAGMVF--KGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGW 264 (416)
T ss_dssp CCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBC--CSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEE
T ss_pred ccCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEE
Confidence 988 99999999999 999999999998642 111 1110 111112245667899985 44567999
Q ss_pred EEEeCC-CCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 010897 288 VVWRTK-DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366 (498)
Q Consensus 288 ~~~~~~-~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 366 (498)
++.+++ +.+ +.+........ ...++.+.....++..+|.....+.+.+..++..++++++.+.|++++++++
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 337 (416)
T 1bw0_A 265 LLYVDPHGNG-PSFLEGLKRVG------MLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP 337 (416)
T ss_dssp EEEECTTCSC-HHHHHHHHHHH------HHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred EEeeCchhhH-HHHHHHHHHHh------ccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 998775 332 21110000000 0012222233334444454445677888899999999999999999877887
Q ss_pred eeCCCCccEEEEEecCC---CCCCHHHHHHHH-HhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 367 LSKDVGVPLVAFSLKDS---SAHTVFEISEGL-RKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 367 ~~~~~~~~~v~f~~~~~---~~~~~~~l~~~L-~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
..+. ..+++.++++.. ...+..++.++| .++|+.+....... ...++|++++ .+.+++++.++.|+++++
T Consensus 338 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~---~~~~iRis~~--~~~e~l~~~l~~l~~~l~ 411 (416)
T 1bw0_A 338 TMPR-GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFH---APGFTRLTTT--RPVEVYREAVERIKAFCQ 411 (416)
T ss_dssp CCCC-BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGT---CTTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred cCCC-eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccC---CCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 6443 466777777421 124677898988 48898875432211 1357999985 578888888888888876
Q ss_pred HH
Q 010897 443 EI 444 (498)
Q Consensus 443 ~l 444 (498)
+.
T Consensus 412 ~~ 413 (416)
T 1bw0_A 412 RH 413 (416)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 70
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.95 E-value=1.3e-27 Score=241.74 Aligned_cols=332 Identities=13% Similarity=-0.010 Sum_probs=225.3
Q ss_pred ccCCChHHHHHHHHHHhcc---CCCC----CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceee-ecChhHHHHHHHH
Q 010897 64 VTTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGL 135 (498)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~~---n~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~g~sea~~la~~ 135 (498)
.|++.++++.++|.+.+.. |+.. ...++...++-+++++.+++++|.+.+ ..+++ |.|+|+++.+++.
T Consensus 34 gpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~ai~ 109 (386)
T 3qm2_A 34 GPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSN----YKVLFCHGGGRGQFAGVPL 109 (386)
T ss_dssp SSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTT----EEEEEEESCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHHHHHH
Confidence 3667788888888766543 2211 011234455566889999999999642 23777 6899999998887
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCchh--HHHHHHHHcCCeeEEEEec--CCccccCHHHHHHHhhhCCeEEEEeec
Q 010897 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQV--CWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAILG 211 (498)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~--~~~~~~~~~g~~~~~v~~~--~~~~~~d~~~L~~~i~~~t~~v~~~~~ 211 (498)
.+..+ ++++++...+|+ .|...++..| +++.++++ +++..+|+++++.+++++|++|.+++.
T Consensus 110 ~l~~~-------------gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~ 175 (386)
T 3qm2_A 110 NLLGD-------------KTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPN 175 (386)
T ss_dssp HHCTT-------------CCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSE
T ss_pred hccCC-------------CCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECC
Confidence 76321 245543333333 3445567778 89999988 442348888888899999999999999
Q ss_pred cCCcccc-cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEE
Q 010897 212 STLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW 290 (498)
Q Consensus 212 ~t~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~ 290 (498)
+|.||.+ .|+++|. + ++++|||++++.+..|+ |+. ..+.+.+++|||+ +|.|+|++++
T Consensus 176 et~tG~~i~pi~~i~-----~------g~~~~vDa~qs~g~~pi-------dv~--~~~~~~~s~hK~l-GP~G~g~l~v 234 (386)
T 3qm2_A 176 ETIDGIAIDETPDFG-----P------EVVVTADFSSTILSAPL-------DVS--RYGVIYAGAQKNI-GPAGLTLVIV 234 (386)
T ss_dssp ETTTTEECCCCCCCC-----T------TCCEEEECTTTTTSSCC-------CGG--GCSEEEEETTTTT-CCTTEEEEEE
T ss_pred cCCcCEecCchhhhc-----C------CCEEEEEcccccCCCCC-------Ccc--ccCEEEEeccccc-CCCccEEEEE
Confidence 9999995 9999985 6 99999999998776554 221 2235679999999 5999999999
Q ss_pred eCCCCCCcccccccCccC--CCCCCccccCCCchHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EE
Q 010897 291 RTKDDLPDELVFHINYLG--SDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRF-EI 366 (498)
Q Consensus 291 ~~~~~l~~~~~~~~~yl~--~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~ 366 (498)
|+.. +....+..+.++. ..+......+|.+...++++..+++.+..+ |+.++.++..+++++|.+.|++++ + ..
T Consensus 235 ~~~~-~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~-~~~~ 312 (386)
T 3qm2_A 235 REDL-LGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRN 312 (386)
T ss_dssp EGGG-CSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS-SEEC
T ss_pred CHHH-HhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-Cccc
Confidence 8752 2111111122221 001111122566667888899999988888 899999999999999999999986 5 33
Q ss_pred eeCC-CC-ccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 367 LSKD-VG-VPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 367 ~~~~-~~-~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
..++ .+ .++++|.+++ .+.+ ..+...|.++|+.+...... ...+|+|+...+|.+|+|+|++.|+++.++
T Consensus 313 ~~~~~~rs~~iv~f~~~~-~~~~-~~~~~~L~~~gI~~~~g~~~-----~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 313 DVAQANRSRMNVPFQLAD-NTLD-KVFLEESFAAGLHALKGHRV-----VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CBCGGGBCSSEEEEEESS-GGGH-HHHHHHHHHTTEECCBCCTT-----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHcCceEEEEECCC-cccc-HHHHHHHHHCCCEEeCCCCC-----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 2222 23 3589999964 2345 57888899999886432111 123999999999999999999999988754
No 71
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.95 E-value=6.4e-26 Score=229.64 Aligned_cols=342 Identities=10% Similarity=-0.008 Sum_probs=236.0
Q ss_pred CcccccccC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHH
Q 010897 58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA 136 (498)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a 136 (498)
+++....+. +++|.+.+++.+.+......|... ..++++++.+++++.+|.+.+. ..+++|+|+++|+.+++.+
T Consensus 27 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~---~~v~~~~g~~~a~~~~~~~ 101 (383)
T 3kax_A 27 IHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLP--PENIGDIICNWTKKQYNWDIQK---EWIVFSAGIVPALSTSIQA 101 (383)
T ss_dssp EECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCCC--CTTHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHHHHHHH
T ss_pred eecccccCCCCCCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCCh---hhEEEcCCHHHHHHHHHHH
Confidence 444444333 356889999988887644444332 5678889999999999954322 3489999999999998888
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC--CccccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~--~~~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
+.++ +++|+++.++|..+...++..|++++.+++++ ++|.+|+++|++++++++++|++++++||
T Consensus 102 l~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~np 168 (383)
T 3kax_A 102 FTKE-------------NESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNP 168 (383)
T ss_dssp HCCT-------------TCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSBTT
T ss_pred hCCC-------------CCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCCCCC
Confidence 7432 46899999999999999999999999999863 34779999999999888999999999999
Q ss_pred cccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCC----CCeeEEEEcCCccCC-CCCCeE
Q 010897 215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL----PLVKSINVSGHKYGL-VYAGVG 286 (498)
Q Consensus 215 tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~----~~~dsi~~s~hK~l~-~p~g~g 286 (498)
||.+.| +++|.++|+++ |+++++|++|+++.. ..........+ ...+.+..+.+|.+. ++.++|
T Consensus 169 tG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 240 (383)
T 3kax_A 169 IGRVWKKEELTKLGSLCTKY------NVIVVADEIHSDIIY--ADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQAS 240 (383)
T ss_dssp TTBCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCE
T ss_pred CCcCcCHHHHHHHHHHHHHC------CCEEEEEcccccccc--CCCCceeHhhcCccccCcEEEEEEChhhccCcchhhe
Confidence 999976 55566669999 999999999988652 11111000111 135577889999876 677889
Q ss_pred EEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeE
Q 010897 287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGRFE 365 (498)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~ 365 (498)
+++..+++.. +.+........ . ++.+.....+..+++.. ..+.+.+..++..++++++.+.|++ +++++
T Consensus 241 ~~~~~~~~~~-~~~~~~~~~~~----~----~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 310 (383)
T 3kax_A 241 IIIIPNEKLR-QAFTSIQYRQG----F----HGLNIFAYTAMQSAYTE-CNDWLNEIRFYIEDNAKFACEYIKDHIPTLS 310 (383)
T ss_dssp EEECCCHHHH-HHHHHHHHHTT----C----CCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred EEEeCCHHHH-HHHHHHHhhcc----c----CCCCHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 9986443221 11110000000 0 12222222223333322 3455778888888999999999998 77788
Q ss_pred EeeCCCCccEEE-EEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 366 ILSKDVGVPLVA-FSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 366 ~~~~~~~~~~v~-f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
++.+ ..+++. +.++. .+.+..++.++|. ++|+.+....... ..+..++|++++ .+.++++++++.|++++
T Consensus 311 ~~~~--~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 311 VMKP--EGSFLLWIDCSA-LNLSQDERTKLLEEKGKIIVEPGEKYG-LGGEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp ECCC--SBSSEEEEECGG-GCCCHHHHHHHHHHTSCEECEESGGGC-TTCTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred EecC--CceEEEEEEccc-cCCCHHHHHHHHHhhCCEEeECchhhc-CCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 8754 344444 56643 2357889999997 6898876432111 123578999987 37888888888777665
No 72
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.95 E-value=2.2e-26 Score=234.82 Aligned_cols=342 Identities=15% Similarity=0.116 Sum_probs=235.5
Q ss_pred CCCCCcccccccCC--ChHHHHHHHHHHhccCCCCCc--CCc-chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 54 GNPRLNLASFVTTW--MEPECDKLVMASINKNYVDMD--EYP-VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 54 ~~p~~~~~~~~~~~--~~~~~~~~l~~~~~~n~~~~~--~~~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
++..+++.+..+.+ ++|.+.+++.+.++.....+. .++ +......++++.+++++|.+. .+++++|++
T Consensus 44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~ 116 (401)
T 1fc4_A 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED-------AILYSSCFD 116 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHH
T ss_pred CccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCc-------EEEeCChHH
Confidence 44444555544433 468888888887765222111 111 113455677788999998862 556667788
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh------C
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------N 202 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~------~ 202 (498)
|+..++.++..+ ++.|+++.++|.++...++..|++++.++. +|+++|++++++ +
T Consensus 117 a~~~~~~~~~~~-------------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 117 ANGGLFETLLGA-------------EDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp HHHTTHHHHCCT-------------TCEEEEETTCCHHHHHHHHTSCSEEEEECT------TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCC-------------CCEEEEcchhHHHHHHHHHHcCCceEEECC------CCHHHHHHHHHHhhccCCC
Confidence 998887776332 468999999999998899999999888762 578999998875 7
Q ss_pred CeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcc-cccccccCCCCccccCC-CCeeEEEEcCCccCC
Q 010897 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG-GFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGL 280 (498)
Q Consensus 203 t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~-g~~~~~~~~~~~~~~~~-~~~dsi~~s~hK~l~ 280 (498)
+++|++++++||||.+.|+++|.++|+++ |+++++|++|+ ++..+ ........+++ ++.|++..+.||++.
T Consensus 178 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~li~De~~~~g~~~~-~g~~~~~~~~~~~~~di~~~s~sK~~~ 250 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIANLKGVCDLADKY------DALVMVDDSHAVGFVGE-NGRGSHEYCDVMGRVDIITGTLGKALG 250 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHT------TEEEEEECTTTTTTSST-TSCCHHHHTTCTTCCSEEEEESSSTTC
T ss_pred ceEEEEeCCcCCCCCCCCHHHHHHHHHHc------CCEEEEECcccccccCC-CCCccHHHcCCCcCCcEEEecchhhcc
Confidence 89999999999999999999999999999 99999999996 65311 00000100121 357899999999996
Q ss_pred CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q 010897 281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360 (498)
Q Consensus 281 ~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 360 (498)
++.| |+++.+ ++.+ +.+.... ..+...++.+.....+..++++.+.. ..+..++..++++++.+.|++
T Consensus 251 ~~~g-G~~~~~-~~~~-~~l~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~ 318 (401)
T 1fc4_A 251 GASG-GYTAAR-KEVV-EWLRQRS-------RPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSA 318 (401)
T ss_dssp SSSC-EEEEEC-HHHH-HHHHHHC-------HHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-EEEEcC-HHHH-HHHHHhC-------cCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 6676 888864 3222 2111100 00111123333344444455544321 357788888999999999998
Q ss_pred CCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
++ ++++. ...+++.+++++ ..+..++.++|.++|+.+.....+....+..++|++++...+.++++++++.|+++
T Consensus 319 ~g-~~~~~--~~~~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 319 AG-FTLAG--ADHAIIPVMLGD--AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp TT-CCBCC--SSSSEEEEEEEC--HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cC-CcccC--CCCCEEEEEcCC--hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 84 77663 367888888853 24567899999999998865543322234578999998888999999999999999
Q ss_pred HHHHH
Q 010897 441 LKEIE 445 (498)
Q Consensus 441 l~~l~ 445 (498)
++++.
T Consensus 394 ~~~~~ 398 (401)
T 1fc4_A 394 GKQLG 398 (401)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 87653
No 73
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.95 E-value=4.7e-26 Score=234.23 Aligned_cols=348 Identities=13% Similarity=0.067 Sum_probs=242.9
Q ss_pred CCCCcccccccC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHH
Q 010897 55 NPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (498)
Q Consensus 55 ~p~~~~~~~~~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la 133 (498)
+..++++...+. +++|.+.+++.+.+......|...+ .++++++++++++.+|++.+. ..+++|+|+++|+.++
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~--~~l~~~l~~~l~~~~g~~~~~---~~v~~~~g~~ea~~~a 135 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYFN--DDLYQAVIDWERKEHDYAVVK---EDILFIDGVVPAISIA 135 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCC--HHHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHHHH
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCC--HHHHHHHHHHHHHHhCCCCCH---HHEEEcCCHHHHHHHH
Confidence 333444443333 3468899999888876444443333 788889999999999965432 3599999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec--CCccccCHHHHHHHhh-hCCeEEEEee
Q 010897 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD-ENTICVAAIL 210 (498)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~--~~~~~~d~~~L~~~i~-~~t~~v~~~~ 210 (498)
+.++.++ +++|+++.++|..+..+++..|.+++.+|++ +++|.+|+++|+++++ +++++|+++.
T Consensus 136 ~~~~~~~-------------gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~ 202 (421)
T 3l8a_A 136 LQAFSEK-------------GDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCS 202 (421)
T ss_dssp HHHHSCT-------------EEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEES
T ss_pred HHHhcCC-------------CCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECC
Confidence 9887432 4689999999999999999999999999985 5557899999999998 6899999999
Q ss_pred ccCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc--CCCCeeEEEEcCCccCC-CCCC
Q 010897 211 GSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF--RLPLVKSINVSGHKYGL-VYAG 284 (498)
Q Consensus 211 ~~t~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~--~~~~~dsi~~s~hK~l~-~p~g 284 (498)
++|++|.+ +++++|.++|+++ |+++++|++|+++...-.....-..+ .....+.+..+.+|++. ++.+
T Consensus 203 p~nptG~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~ 276 (421)
T 3l8a_A 203 PHNPGGRVWDNDDLIKIAELCKKH------GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTK 276 (421)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhh
Confidence 99999999 7899999999999 99999999998875210000000011 11245677889999885 6778
Q ss_pred eEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 010897 285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRF 364 (498)
Q Consensus 285 ~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~ 364 (498)
+|+++.++++.. +.+........ . ++.+.....+..+++.. +.+.+++..++..+++++|.+.|++++++
T Consensus 277 ~G~~~~~~~~l~-~~~~~~~~~~~----~----~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i 346 (421)
T 3l8a_A 277 NSFAIIQNESLR-RKFQYRQLANN----Q----HEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKI 346 (421)
T ss_dssp CEEEECCSHHHH-HHHHHHHHHTT----C----SCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred eEeEEcCCHHHH-HHHHHHHHhcc----c----CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 899987644321 11111000000 0 12223344444555543 45667888888899999999999987778
Q ss_pred EEeeCCCCccEEE-EEecCCCCCCHHHHHHHHHh-cCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 365 EILSKDVGVPLVA-FSLKDSSAHTVFEISEGLRK-FGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 365 ~~~~~~~~~~~v~-f~~~~~~~~~~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.++.+. .+++. +.++.. +.+..++.++|.+ .|+.+...... ...+..++|+++. .++++++++++.|+++++
T Consensus 347 ~~~~~~--~~~~~~v~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~f-~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 347 KVMEPE--GTYLVWLDFSAY-AIAQPQLSEKLQNEAKVVLNDGAHF-GKEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp EEECCS--BSSEEEEECGGG-TCCTTHHHHHHHHTTCEECEEGGGG-CGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred eEeCCC--eeEEEEEecccc-CCCHHHHHHHHHHhCCEEEECchhh-CCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 877543 34444 666431 3456689999974 59887543211 1134578999987 588889888888877653
No 74
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.95 E-value=5.8e-26 Score=232.15 Aligned_cols=347 Identities=13% Similarity=0.049 Sum_probs=237.1
Q ss_pred CCCcccccccC---CChHHHHHHHHHHhccC---CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHH
Q 010897 56 PRLNLASFVTT---WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129 (498)
Q Consensus 56 p~~~~~~~~~~---~~~~~~~~~l~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea 129 (498)
..+++.++.+. .+++.+.+++.+.++.. .. |....+..++++++.+++.+.+|++.+. ..+++|+|+++|
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~---~~v~~t~g~t~a 110 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSP---ENIVITIGGTGA 110 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCG---GGEEEESHHHHH
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCc---ceEEEecCHHHH
Confidence 34445444432 25677888888877653 23 4444467888888888888877865322 248999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhh----h--CC
Q 010897 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----E--NT 203 (498)
Q Consensus 130 ~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~----~--~t 203 (498)
+.+++.++.++ +++|+++.++|..+...++..|++++.+|++++ + +|+++|+++++ + ++
T Consensus 111 ~~~~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~~~ 175 (407)
T 2zc0_A 111 LDLLGRVLIDP-------------GDVVITENPSYINTLLAFEQLGAKIEGVPVDND-G-MRVDLLEEKIKELKAKGQKV 175 (407)
T ss_dssp HHHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHhcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC-C-CCHHHHHHHHHhhhcccCCc
Confidence 99998887432 468999999999999999999999999999865 3 99999999998 6 67
Q ss_pred eEE-EEeeccCCcccccCHH---HHHHHHHHhhcccCCCceEEEecCcccccccccCCCC--ccccCCCCeeEEEEcCCc
Q 010897 204 ICV-AAILGSTLTGEFEDVK---LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSGHK 277 (498)
Q Consensus 204 ~~v-~~~~~~t~tG~~~~l~---~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~--~~~~~~~~~dsi~~s~hK 277 (498)
++| ++++++||||.+.|++ +|.++|+++ |+++|+|++|+++.. ..... -..+.....+.+..+.+|
T Consensus 176 ~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK 247 (407)
T 2zc0_A 176 KLIYTIPTGQNPMGVTMSMERRKALLEIASKY------DLLIIEDTAYNFMRY--EGGDIVPLKALDNEGRVIVAGTLSK 247 (407)
T ss_dssp EEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBS--SCSSCCCGGGGCSSCCEEEEEESTT
T ss_pred eEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEECCCccccc--CCCCCCChhhcCCCCCEEEEccccc
Confidence 776 4678999999998887 899999999 999999999998752 11111 011211234466778899
Q ss_pred cCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc-H-HHHHHHHHHHHHHHHHHH
Q 010897 278 YGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-F-EGYKNIMENCMGNARALR 355 (498)
Q Consensus 278 ~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-~-~g~~~~~~~~~~~a~~l~ 355 (498)
+++++.++|+++.+ ++.. ..+..... .++ ++.+.....+....++... . +.+++..++..++++++.
T Consensus 248 ~~~~G~r~G~~~~~-~~~~-~~~~~~~~-------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (407)
T 2zc0_A 248 VLGTGFRIGWIIAE-GEIL-KKVLMQKQ-------PID--FCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIML 316 (407)
T ss_dssp TTCTTSCCEEEECC-HHHH-HHHHHHHT-------TTT--SSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHH
T ss_pred ccCCCcceEEEecC-HHHH-HHHHHHHH-------hhc--CCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 99855578999864 2221 11111000 001 1112222222333333211 2 345566777788999999
Q ss_pred HHHhc-CCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCC-CCCCCeeEEEEeecCCCCHHHHHH
Q 010897 356 EGLEK-TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMP-ANAENVAVLRVVVREDFSRSLVER 432 (498)
Q Consensus 356 ~~L~~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~-~~~~~~~~lRv~v~~~~t~~~~~~ 432 (498)
+.|++ .+++++..+. ...++.++++. +.+..++.+.|.++ |+.+...... ....+..++|++++.. +.+++++
T Consensus 317 ~~L~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~ 392 (407)
T 2zc0_A 317 KALENHLPNAEFTKPI-AGMFVMFFLPE--GADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPI 392 (407)
T ss_dssp HHHHHHCTTSCBCCCS-BSSEEEEECST--TCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHH
T ss_pred HHHHHhCCCCEEecCC-CcEEEEEEcCC--CCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHH
Confidence 99987 4667665432 45677788843 46788999999998 9887543211 1112346899999765 8899999
Q ss_pred HHHHHHHHHHHH
Q 010897 433 LISHIEEVLKEI 444 (498)
Q Consensus 433 l~~~l~~~l~~l 444 (498)
+++.|+++++++
T Consensus 393 ~~~~l~~~l~~~ 404 (407)
T 2zc0_A 393 GIKKLAKLYKEK 404 (407)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 75
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.95 E-value=1.4e-25 Score=225.32 Aligned_cols=315 Identities=14% Similarity=0.048 Sum_probs=224.4
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.+.....++ .+... ++++++++++|.+.+ .+++|+|+++|+.+++.++
T Consensus 39 ~~~~~v~~a~~~~~~~~~~y~--~~~~~----~l~~~la~~~~~~~~-----~i~~~~g~t~al~~~~~~~--------- 98 (361)
T 3ftb_A 39 GIPKSFLNNIDEGIKNLGVYP--DVNYR----RLNKSIENYLKLKDI-----GIVLGNGASEIIELSISLF--------- 98 (361)
T ss_dssp CSCHHHHTTHHHHHHGGGSCC--CTTCH----HHHHHHHHHHTCCSC-----EEEEESSHHHHHHHHHTTC---------
T ss_pred CCCHHHHHHHHHHHHHhcCCC--CccHH----HHHHHHHHHhCCCcc-----eEEEcCCHHHHHHHHHHHc---------
Confidence 456788888887776532222 12333 555668888887642 4899999999999888765
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---HHH
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKL 223 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l~~ 223 (498)
++|+++.++|..+...++..|++++.+|++++ ..+|+++|++++++ +++|++++|+||||.+.| +++
T Consensus 99 --------d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~ 168 (361)
T 3ftb_A 99 --------EKILIIVPSYAEYEINAKKHGVSVVFSYLDEN-MCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIH 168 (361)
T ss_dssp --------SEEEEEESCCTHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHH
T ss_pred --------CcEEEecCChHHHHHHHHHcCCeEEEeecCcc-cCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHH
Confidence 27999999999999999999999999999865 56889999999998 999999999999999975 566
Q ss_pred HHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCccccc
Q 010897 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVF 302 (498)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~ 302 (498)
|.++|+++ |+++++|++|+++... ..............+.+..+.+|.++ ++.++|++++.+++.. +.+.
T Consensus 169 i~~~~~~~------~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~-~~~~- 239 (361)
T 3ftb_A 169 VLKLAEEK------KKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIA-AKIK- 239 (361)
T ss_dssp HHHHHHHH------TCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHH-HHHH-
T ss_pred HHHHhhhc------CCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHH-HHHH-
Confidence 77778899 9999999999987632 00111111122233466778899875 6678899885554322 1111
Q ss_pred ccCccCCCCCCccccCCCchHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EeeCCCCccEEEEEe
Q 010897 303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTGRFE-ILSKDVGVPLVAFSL 380 (498)
Q Consensus 303 ~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~~~~~~v~f~~ 380 (498)
..... ++. ..+.+.++...+. .+.+.+..++..++++++.+.|++++++. +..+ ..+++.+++
T Consensus 240 ------~~~~~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~ 304 (361)
T 3ftb_A 240 ------AKQNP----WNI---NCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP--HANFVLCRL 304 (361)
T ss_dssp ------TTSCT----TCS---CHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC--SSSEEEEEE
T ss_pred ------hhCCC----CCC---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC--CCeEEEEEc
Confidence 10111 122 2233444444443 45677888888999999999999998888 6543 567888888
Q ss_pred cCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 381 KDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
++ .+..++.++|.++|+.+....... ..+..++|++++ +.++++++++.|+++.+
T Consensus 305 ~~---~~~~~l~~~l~~~gi~v~~g~~~~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 305 EN---ISGEKLYDSLLKEDIVIRRCCNFI-GLDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp SS---SCHHHHHHHHHTTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHCCeEEeeCccCC-CCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 54 578899999999998876433211 234568999987 77888888888887764
No 76
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.95 E-value=1.3e-26 Score=232.27 Aligned_cols=325 Identities=16% Similarity=0.140 Sum_probs=226.9
Q ss_pred ccccccCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHH
Q 010897 60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR 139 (498)
Q Consensus 60 ~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~ 139 (498)
+.+..+.+++|.+.+++.+.+.. . ...+ +...+..++++++++++| +. ..+++|+||++|+.+++.++.+
T Consensus 12 ~~~~~~~~~~~~v~~a~~~~~~~-~--~~~~-~~~~~~~~l~~~la~~~g-~~-----~~v~~~~~gt~a~~~al~~~~~ 81 (356)
T 1v72_A 12 FSSDNIAGASPEVAQALVKHSSG-Q--AGPY-GTDELTAQVKRKFCEIFE-RD-----VEVFLVPTGTAANALCLSAMTP 81 (356)
T ss_dssp CSCGGGCCCCHHHHHHHHHTTSS-C--CCST-TCSHHHHHHHHHHHHHHT-SC-----CEEEEESCHHHHHHHHHHTSCC
T ss_pred eccCCccCCCHHHHHHHHhhccC-c--cccc-ccchHHHHHHHHHHHHhC-CC-----CcEEEeCCccHHHHHHHHHhcC
Confidence 34444556778888888877532 1 1122 234566788899999999 32 2379999999999998887643
Q ss_pred HHHHHHHhcCCCCCCcEEEEcCCchhHHHHH--HHHc--CCeeEEEEecCCccccCHHHHHH-Hhhh-------CCeEEE
Q 010897 140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEKF--ARYF--EVELKEVKLEEGYYVMNPVKAVE-LVDE-------NTICVA 207 (498)
Q Consensus 140 ~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~--~~~~--g~~~~~v~~~~~~~~~d~~~L~~-~i~~-------~t~~v~ 207 (498)
+ +++|+++.++|++.... +... |++++.+|++ ++.+|+++|++ ++++ +|++|+
T Consensus 82 ~-------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~~v~ 146 (356)
T 1v72_A 82 P-------------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVS 146 (356)
T ss_dssp T-------------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEE
T ss_pred C-------------CCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCeEcHHHHHHHhhhcchhhccCCceEEE
Confidence 2 46899999999987766 7777 9999998875 37899999999 9975 578899
Q ss_pred EeeccCCccc---ccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCC-CCeeEEEEcCCccCCCCC
Q 010897 208 AILGSTLTGE---FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYA 283 (498)
Q Consensus 208 ~~~~~t~tG~---~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~-~~~dsi~~s~hK~l~~p~ 283 (498)
++++++ ||. .+++++|.++|+++ |+++|+|++|+.+........ ...+.+ ..+|+++++.||+ +.|.
T Consensus 147 ~~~~~~-tG~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~s~sK~-g~~~ 217 (356)
T 1v72_A 147 ITQATE-VGSIYTLDEIEAIGDVCKSS------SLGLHMDGSRFANALVSLGCS-PAEMTWKAGVDALSFGATKN-GVLA 217 (356)
T ss_dssp EESSCT-TSCCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHHHHHHTCC-TTTTTGGGTCCEEEECCGGG-TCSS
T ss_pred EEcCCC-CCccCCHHHHHHHHHHHHHc------CCeEEEEchhhHhHhccCCCC-HHHhhhhhcCCEEEEecccC-CCcC
Confidence 998765 999 67789999999999 999999999976532111111 111111 2578899999999 5688
Q ss_pred CeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010897 284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR 363 (498)
Q Consensus 284 g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~ 363 (498)
|+|+++. +++.. +.+.....+.+. + .+ ....++...+..+..+.+.++.++..++++++.+.|+++++
T Consensus 218 G~g~~~~-~~~~~-~~~~~~~~~~~~------~-~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g 285 (356)
T 1v72_A 218 AEAIVLF-NTSLA-TEMSYRRKRAGH------L-SS---KMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGG 285 (356)
T ss_dssp CEEEEES-SGGGH-HHHHHHHHHTTC------C-CS---STHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccEEEEE-CHHHH-hhHHHHhhccCc------h-hh---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 8888875 33322 211110011110 0 01 11223334455565555777788889999999999999877
Q ss_pred eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 364 FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+++..++ ..+++.++++ .++.++|.++|+.+....+ +..++|++++...++++++++++.|+++++.
T Consensus 286 ~~~~~~~-~~~~~~~~~~-------~~~~~~l~~~gi~v~~g~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 286 VEVLGGT-EANILFCRLD-------SAMIDALLKAGFGFYHDRW-----GPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp EEEESCC-CSSEEEEEEC-------HHHHHHHHHTTCBCBCSSS-----STTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred cEEccCC-CccEEEEEcC-------HHHHHHHHhcCeEEecccc-----CCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 9886543 5777877773 2799999999988753221 1467999988788999999999998887654
No 77
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.95 E-value=5.8e-26 Score=230.61 Aligned_cols=333 Identities=14% Similarity=0.041 Sum_probs=232.5
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+.+ ..+++|+|+++|+.+++.++.++
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~--~~v~~~~g~~~a~~~~~~~~~~~------ 114 (386)
T 1u08_A 43 DGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDAD--SDITVTAGATEALYAAITALVRN------ 114 (386)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTT--TTEEEESSHHHHHHHHHHHHCCT------
T ss_pred CCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CCEEEcCChHHHHHHHHHHhCCC------
Confidence 3567888888888765333344445678899999999999889764321 13999999999999988886332
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---HHH
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKL 223 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l~~ 223 (498)
+++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++++||||.+.| +++
T Consensus 115 -------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 187 (386)
T 1u08_A 115 -------GDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAA 187 (386)
T ss_dssp -------TCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred -------CCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHH
Confidence 4689999999999999999999999999997645789999999999888999999999999999975 688
Q ss_pred HHHHHHHhhcccCCCceEEEecCcccccccccCCCC-c-cccC-CCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcc
Q 010897 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFR-LPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDE 299 (498)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~-~~~~-~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~ 299 (498)
|.++|+++ |+++++|++|+++.. ..... . ..+. ....|++..+.||+++ ++.++|+++.++ + +.+.
T Consensus 188 i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~-~~~~ 257 (386)
T 1u08_A 188 LWQAIAGH------EIFVISDEVYEHINF--SQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA-P-ISAE 257 (386)
T ss_dssp HHHHHTTS------CCEEEEECTTTTCBC--CSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH-H-HHHH
T ss_pred HHHHHHHc------CcEEEEEcccccccc--CCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH-H-HHHH
Confidence 99999999 999999999998642 11111 1 0110 1347888999999886 445689998643 2 1111
Q ss_pred cccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEE
Q 010897 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFS 379 (498)
Q Consensus 300 ~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~ 379 (498)
+.....+. .++.+.....+...++... .+.+++..++..++++++.+.|++.+ +++..+. ...++.++
T Consensus 258 l~~~~~~~---------~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~ 325 (386)
T 1u08_A 258 IRKVHQYL---------TFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESR-LEILPCE-GTYFLLVD 325 (386)
T ss_dssp HHHHHHHH---------TSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSS-CEECCCC-BSSEEEEE
T ss_pred HHHHHHhh---------ccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCC-ceEEEEEe
Confidence 11100000 1222223333333444332 45677888888899999999999884 8876543 45677778
Q ss_pred ecCCCCCCHHHHHHHHH-hcCcEeeeec-CCCCCCCeeEEEEeecCCCCHHHHHHHHHHHH
Q 010897 380 LKDSSAHTVFEISEGLR-KFGWIVPAYT-MPANAENVAVLRVVVREDFSRSLVERLISHIE 438 (498)
Q Consensus 380 ~~~~~~~~~~~l~~~L~-~~G~~v~~~~-~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~ 438 (498)
+++....+..+++++|. ++|+.+.... +.....+..++|+++. .+.++++++++.|+
T Consensus 326 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~ 384 (386)
T 1u08_A 326 YSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLR 384 (386)
T ss_dssp CTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHh
Confidence 75321146788999886 6898875432 2211124568999986 36777776665553
No 78
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.95 E-value=6.9e-26 Score=230.16 Aligned_cols=336 Identities=15% Similarity=0.059 Sum_probs=229.5
Q ss_pred CcccccccC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHH
Q 010897 58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA 136 (498)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a 136 (498)
+++....+. ++++.+.+++.+.+......|....+..++++++.+++.+.+|.+.+. ..+++|+|+++|+.+++.+
T Consensus 34 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~g~~~al~~~~~~ 110 (385)
T 1b5p_A 34 VALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP---EETIVTVGGSQALFNLFQA 110 (385)
T ss_dssp EECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG---GGEEEESHHHHHHHHHHHH
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---HHEEEcCChHHHHHHHHHH
Confidence 444444443 345678888877775543344444567889999999998888875432 2489999999999999888
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEeeccCCc
Q 010897 137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLT 215 (498)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~~~~t~t 215 (498)
+.++ +++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++++++|++++|+|||
T Consensus 111 l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPt 177 (385)
T 1b5p_A 111 ILDP-------------GDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPT 177 (385)
T ss_dssp HCCT-------------TCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred hcCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCC
Confidence 7432 46899999999999999999999999999974 457899999999998889999999999999
Q ss_pred ccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc-cccCCCCeeEEEEcCCccCC-CCCCeEEEEE
Q 010897 216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKYGL-VYAGVGWVVW 290 (498)
Q Consensus 216 G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~-~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~ 290 (498)
|.+.+ +++|.++|+++ |++|++|++|+.+.. ..+... ..+. +..+++..+.+|+++ ++.++||++.
T Consensus 178 G~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~-~~~~i~~~s~SK~~~~~G~RiG~~~~ 248 (385)
T 1b5p_A 178 GAVYPKEVLEALARLAVEH------DFYLVSDEIYEHLLY--EGEHFSPGRVA-PEHTLTVNGAAKAFAMTGWRIGYACG 248 (385)
T ss_dssp CCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBS--SSCCCCGGGTC-TTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCCHHHcC-CCCEEEEEechhhcCCcccceEEEEe
Confidence 99855 89999999999 999999999998752 111000 1111 134667778889874 5566999986
Q ss_pred eCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010897 291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-----GFEGYKNIMENCMGNARALREGLEKTGRFE 365 (498)
Q Consensus 291 ~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 365 (498)
++ +.+ +.+.....+. . .+ ...+.++++...+ +.+.+++..++..++++++.+.|+++ +++
T Consensus 249 ~~-~~~-~~l~~~~~~~-----~----~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 313 (385)
T 1b5p_A 249 PK-EVI-KAMASVSRQS-----T----TS---PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLK 313 (385)
T ss_dssp CH-HHH-HHHHHHHHTT-----T----CS---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred CH-HHH-HHHHHHHhhc-----c----CC---CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence 42 111 1111000000 0 11 1223344443333 34446677788888999999999988 577
Q ss_pred EeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
+..+. ...++...++. .+.+..++.++|.++|+.+....... . .+++|++++ .+.+++++.++.|+++
T Consensus 314 ~~~~~-~~~~~~~~~~~-~~~~~~~l~~~l~~~gv~v~~g~~f~--~-~~~iRis~~--~~~~~i~~~l~~l~~~ 381 (385)
T 1b5p_A 314 AVRPS-GAFYVLMDTSP-IAPDEVRAAERLLEAGVAVVPGTDFA--A-FGHVRLSYA--TSEENLRKALERFARV 381 (385)
T ss_dssp BCCCS-BTTEEEEECTT-TCSSHHHHHHHHHHTTEECEESGGGT--C-TTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred ecCCC-eeEEEEEecCC-CCCCHHHHHHHHHHCCeEEecccccC--C-CCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 65442 33344446642 23578899999999998875432211 1 357999986 5667666555555444
No 79
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=1.1e-26 Score=232.89 Aligned_cols=319 Identities=11% Similarity=0.019 Sum_probs=227.4
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.+.. |....+..++++++++++++++|.+. ..+++|+|+++|+.+++.++.++
T Consensus 25 ~~~~~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~------ 89 (359)
T 1svv_A 25 GMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPD-----ADVHFISGGTQTNLIACSLALRP------ 89 (359)
T ss_dssp CCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTT-----SEEEEESCHHHHHHHHHHHHCCT------
T ss_pred CCCHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCC-----ccEEEeCCchHHHHHHHHHHhCC------
Confidence 5678899998888763 22234556788899999999999764 24899999999999999887432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHH--HHHHcCCeeEEEEecCCccccCHHHHHHHhhhC-------CeEEEEeeccCCccc
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEK--FARYFEVELKEVKLEEGYYVMNPVKAVELVDEN-------TICVAAILGSTLTGE 217 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~-------t~~v~~~~~~t~tG~ 217 (498)
+++|++++++|.++.. .++..|++++.+|.+ ++.+|+++|+++++++ +++|+++++ |+||.
T Consensus 90 -------gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~ 159 (359)
T 1svv_A 90 -------WEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGT 159 (359)
T ss_dssp -------TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSC
T ss_pred -------CCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCce
Confidence 4689999999999988 478899999999985 3789999999999876 788999988 68999
Q ss_pred ccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCC-CCeeEEEEcCCccCCCCCCeEEEEEeCC
Q 010897 218 FED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYAGVGWVVWRTK 293 (498)
Q Consensus 218 ~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~-~~~dsi~~s~hK~l~~p~g~g~~~~~~~ 293 (498)
+.| +++|.++|+++ |+++|+|++|+++..+....... .+.+ ...|++++++||++ .+.|+|+++++.
T Consensus 160 ~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~~~~~~-~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~- 230 (359)
T 1svv_A 160 QYTKQELEDISASCKEH------GLYLFLDGARLASALSSPVNDLT-LADIARLTDMFYIGATKAG-GMFGEALIILND- 230 (359)
T ss_dssp CCCHHHHHHHHHHHHHH------TCEEEEECTTHHHHHTSTTCCCC-HHHHHHHCSEEEEECTTTT-CSSCEEEEECSG-
T ss_pred ecCHHHHHHHHHHHHHh------CCEEEEEccchhhhhcCCCcchh-hhhhhhcCCEEEEecccCC-CCCceEEEEEcc-
Confidence 988 89999999999 99999999996653211110000 0010 24789999999985 578889888643
Q ss_pred CCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCc
Q 010897 294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGV 373 (498)
Q Consensus 294 ~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 373 (498)
+.+ +.+.... ...+. . .+.. .....+.. ..+..+++.+..++..++++++.+.| +.++++++.+. ..
T Consensus 231 ~~~-~~~~~~~-~~~~~--~----~~~~-~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~-~~ 297 (359)
T 1svv_A 231 ALK-PNARHLI-KQRGA--L----MAKG-WLLGIQFE--VLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPS-AS 297 (359)
T ss_dssp GGC-TTHHHHH-HHTTC--C----CTTT-HHHHHHHH--HHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCC-SS
T ss_pred cHH-HHHHHHH-hcCCc--c----cccc-hhhHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCC-cc
Confidence 222 2111100 00110 0 0111 12222222 23555667888899999999999999 55668776543 56
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 374 PLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 374 ~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+++.+.++ .++.++|.++ |+.+.... ..+..++|++++...+.++++++++.|++++++
T Consensus 298 ~~~~~~~~-------~~~~~~l~~~~gi~v~~~~----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 298 NQLFPILE-------NTMIAELNNDFDMYTVEPL----KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp SEECBEEE-------HHHHHHHTTTEECEEEEEE----TTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred ceEEEEcC-------HHHHHHHHHhcCEEEEecc----cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 77766663 3789999998 98872211 134678999988778999999999999887754
No 80
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.95 E-value=3.2e-26 Score=231.17 Aligned_cols=335 Identities=11% Similarity=0.020 Sum_probs=231.0
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
..++++.+.+++.+.+......+ .+ ...++++.+++++|.+. +++|+|+++|+.+++.+++..+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~--~~----~~~~l~~~la~~~~~~~-------v~~~~ggt~al~~~~~~~~~~~--- 71 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ--GK----RSLLFEEALCEFLGVKH-------ALVFNSATSALLTLYRNFSEFS--- 71 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS--SH----HHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHSSCCC---
T ss_pred CCCCCHHHHHHHHHHHHcCcccC--Ch----HHHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHhcccC---
Confidence 44567889999998887643322 23 23456667899998862 9999999999999988872100
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL 224 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I 224 (498)
..+++|++++++|.++..+++..|++++.++++++ +.+|+++|+++++++|++|+++++ ||.+.|+++|
T Consensus 72 -------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i 140 (375)
T 2fnu_A 72 -------ADRNEIITTPISFVATANMLLESGYTPVFAGIKND-GNIDELALEKLINERTKAIVSVDY---AGKSVEVESV 140 (375)
T ss_dssp -------TTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT-SSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHH
T ss_pred -------CCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCC-CCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHH
Confidence 01468999999999999999999999999999875 479999999999888888877766 8999999999
Q ss_pred HHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeC-CCCCCccccc
Q 010897 225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRT-KDDLPDELVF 302 (498)
Q Consensus 225 ~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~-~~~l~~~~~~ 302 (498)
.++|+++ |+++|+|++|+.+..+. . . .+ ....+++.++++||++ ++ |+|++++++ ++.. +.+..
T Consensus 141 ~~l~~~~------~~~li~D~a~~~~~~~~--~--~-~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~-~~~~~ 206 (375)
T 2fnu_A 141 QKLCKKH------SLSFLSDSSHALGSEYQ--N--K-KVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELH-EKMKL 206 (375)
T ss_dssp HHHHHHH------TCEEEEECTTCTTCEET--T--E-ETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHH-HHHHH
T ss_pred HHHHHHc------CCEEEEECccccCCeEC--C--e-eccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHH-HHHHH
Confidence 9999999 99999999998765321 1 0 11 1224788888899998 45 889888854 3221 11111
Q ss_pred ccCccCC-C--CCCcc--ccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC---C-Cc
Q 010897 303 HINYLGS-D--QPTFT--LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD---V-GV 373 (498)
Q Consensus 303 ~~~yl~~-~--~~~~~--l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---~-~~ 373 (498)
... .+. . ...+. ..+.......+...+++ ...+++.++.++..++++++.+.|++++++++..++ . ..
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 283 (375)
T 2fnu_A 207 FRS-HGMLKKDFFEGEVKSIGHNFRLNEIQSALGL--SQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSN 283 (375)
T ss_dssp HTB-TTEEESSSSCEEESSCCCBCCCCHHHHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCC
T ss_pred HHh-cCCccccccccccccccccCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcce
Confidence 000 000 0 00000 00111011112222222 224567788899999999999999999778887542 1 12
Q ss_pred cEEEEEecCCCCC-CHHHHHHHHHhcCcEeeeecCCCCC------------------CCeeEEEEeecCCCCHHHHHHHH
Q 010897 374 PLVAFSLKDSSAH-TVFEISEGLRKFGWIVPAYTMPANA------------------ENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 374 ~~v~f~~~~~~~~-~~~~l~~~L~~~G~~v~~~~~~~~~------------------~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
.++.+.++. .+. +..++.++|.++|+.+...+.|... ....++|++++...|.+++++++
T Consensus 284 ~~~~~~~~~-~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~ 362 (375)
T 2fnu_A 284 HLYPILMHQ-KFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIA 362 (375)
T ss_dssp SCEEEEECG-GGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred EEEEEEeCc-cccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHH
Confidence 344556642 123 6779999999999988643322110 01268999999888999999999
Q ss_pred HHHHHHHHHH
Q 010897 435 SHIEEVLKEI 444 (498)
Q Consensus 435 ~~l~~~l~~l 444 (498)
+.|+++++.+
T Consensus 363 ~~l~~~~~~~ 372 (375)
T 2fnu_A 363 HSVLKTFESF 372 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 81
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.95 E-value=7.8e-26 Score=229.21 Aligned_cols=328 Identities=13% Similarity=0.035 Sum_probs=226.6
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.+.. ...|....+..+++ +.+++++|.+.+ .+++|+|+++|+.+++.++..+
T Consensus 38 ~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~----~~la~~~~~~~~-----~v~~~~g~~~a~~~~~~~~~~~------ 101 (381)
T 1v2d_A 38 PPPPFLLEAVRRALGR-QDQYAPPAGLPALR----EALAEEFAVEPE-----SVVVTSGATEALYVLLQSLVGP------ 101 (381)
T ss_dssp CCCHHHHHHHHHHTTT-SCSCCCTTCCHHHH----HHHHHHHTSCGG-----GEEEESSHHHHHHHHHHHHCCT------
T ss_pred CCCHHHHHHHHHHHHH-hcCCCCCCCCHHHH----HHHHHhcCCChh-----hEEEcCChHHHHHHHHHHhCCC------
Confidence 3567888888888875 22233333444444 457777887642 3999999999999998887432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec--CCccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---H
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---V 221 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~--~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l 221 (498)
+++|++++++|.++...++..|++++.+|++ ++++.+|+++|++++++++++|++++++||||.+.| +
T Consensus 102 -------gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l 174 (381)
T 1v2d_A 102 -------GDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGEREL 174 (381)
T ss_dssp -------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred -------CCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHH
Confidence 4689999999999999999999999999997 345889999999999888999999999999999965 8
Q ss_pred HHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCccc
Q 010897 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~ 300 (498)
++|.++|+++ |+++|+|++|+++...-..... ..+ ....|.+..+.||+++ .+.++|+++.+. +.+ +.+
T Consensus 175 ~~i~~~~~~~------~~~li~De~~~~~~~g~~~~~~-~~~-~~~~~~~~~s~sK~~~~~G~r~G~~~~~~-~~~-~~~ 244 (381)
T 1v2d_A 175 EAIARLARAH------DLFLISDEVYDELYYGERPRRL-REF-APERTFTVGSAGKRLEATGYRVGWIVGPK-EFM-PRL 244 (381)
T ss_dssp HHHHHHHHHT------TCEEEEECTTTTCBSSSCCCCH-HHH-CTTTEEEEEEHHHHTTCGGGCCEEEECCT-TTH-HHH
T ss_pred HHHHHHHHHc------CCEEEEEcCccccccCCCCCCH-HHh-cCCCEEEEeechhhcCCcccceEEEEeCH-HHH-HHH
Confidence 9999999999 9999999999987520000011 111 3458899999999874 445589998643 222 221
Q ss_pred ccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEE
Q 010897 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFS 379 (498)
Q Consensus 301 ~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~ 379 (498)
.....+. .++.+.....+..+++.... .+.+++..++..+++++|.+.|++.+ +++..+. ...++.++
T Consensus 245 ~~~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~ 313 (381)
T 1v2d_A 245 AGMRQWT---------SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPE-GTYFLMAE 313 (381)
T ss_dssp HHHHHHH---------TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCS-BSSEEEEE
T ss_pred HHHHhhc---------ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCC-cceEEEEe
Confidence 1100000 12222233333334444321 34567888888999999999999964 8776543 34577777
Q ss_pred ecCCCCCCHHHHHHHHHhcCcEeeeecCCC-CCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 380 LKDSSAHTVFEISEGLRKFGWIVPAYTMPA-NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 380 ~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~-~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
+++. + +.+.|.++|+.+....... ...+..++|+++.. +.++++++++.|+++++..++
T Consensus 314 ~~~~---~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 314 LPGW---D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp CTTC---C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC-----
T ss_pred cChH---h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccc
Confidence 7532 2 7777889999875432211 11235689999875 888999999998888766544
No 82
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.95 E-value=6.7e-26 Score=228.09 Aligned_cols=329 Identities=14% Similarity=0.063 Sum_probs=229.5
Q ss_pred cCCChHHHHHHHHHHhccCCC-------CCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYV-------DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF 137 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~ 137 (498)
+.++++.+.+++.+.+..... ....++...++.+++++++++++|.+.+. ...++|+|+++++.+++.++
T Consensus 12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~---~~i~~t~g~t~a~~~~~~~l 88 (362)
T 2c0r_A 12 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGY---KVLFIQGGASTQFAMIPMNF 88 (362)
T ss_dssp SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSE---EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCc---EEEEECCCchHHHHHHHHhc
Confidence 556778899999888754210 11235666777889999999999996420 12467799999999888877
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcCCchhH--HHHHHHHcCCeeEEEEecC---CccccCHHHHHHHhhhCCeEEEEeecc
Q 010897 138 KRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEE---GYYVMNPVKAVELVDENTICVAAILGS 212 (498)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~--~~~~~~~~g~~~~~v~~~~---~~~~~d~~~L~~~i~~~t~~v~~~~~~ 212 (498)
.++ +++|+++.+.|++ +...++..| +++.++++. .+..+|+++++ ++++|++|++++++
T Consensus 89 ~~~-------------gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~ 152 (362)
T 2c0r_A 89 LKE-------------GQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNE 152 (362)
T ss_dssp CCT-------------TCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEE
T ss_pred CCC-------------CCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCc
Confidence 432 4678777666555 456778889 999999862 11235666554 67789999999999
Q ss_pred CCcccc-cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEe
Q 010897 213 TLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291 (498)
Q Consensus 213 t~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~ 291 (498)
|+||.. .|+++| + |+++|+|+||+.+..++ ++ ...|++..++||+++ |.|+|+++.+
T Consensus 153 n~tG~~~~~l~~i------~------~~~vivD~a~~~~~~~~-------~~--~~~d~~~~s~~K~~g-~~G~G~l~~~ 210 (362)
T 2c0r_A 153 TIEGAQFKAFPDT------G------SVPLIGDMSSDILSRPF-------DL--NQFGLVYAGAQKNLG-PSGVTVVIVR 210 (362)
T ss_dssp TTTTEECSSCCCC------T------TSCEEEECTTTTTSSCC-------CG--GGCSEEEEETTTTTC-CSSCEEEEEE
T ss_pred Cccceeccccccc------C------CCEEEEEChhhccCCcc-------ch--hHCcEEEEecccccc-CcCcEEEEEc
Confidence 999995 888887 7 99999999998764321 12 124889999999994 8899999987
Q ss_pred CCCCCCccccc-ccCccCC--CCCCccccCCCchHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EE
Q 010897 292 TKDDLPDELVF-HINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRF-EI 366 (498)
Q Consensus 292 ~~~~l~~~~~~-~~~yl~~--~~~~~~l~~sr~~~~~~a~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~ 366 (498)
++ .+ +.+.. .+.|+.. ........++.+.....++.++++.+... ++.++.++..++++++.+.|++++++ ++
T Consensus 211 ~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 288 (362)
T 2c0r_A 211 ED-LV-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRG 288 (362)
T ss_dssp GG-GS-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEE
T ss_pred HH-HH-hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 53 22 11111 1111100 00000112455555666777777766555 78899999999999999999998755 77
Q ss_pred eeCC--CCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 367 LSKD--VGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 367 ~~~~--~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
..++ ...++++|++++ +.+..++++.|.++|+.+.... + . ...+|++++..++.++++++++.|+++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gi~~~~g~-~---~-~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 289 CVDVDSRSDMNITFRLAS--EELEKEFVKASEQEGFVGLKGH-R---S-VGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp SSCGGGBCSSEEEEECSC--HHHHHHHHHHHHHTTEESCBCC-T---T-TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCChHHcCCcEEEEEcCC--cchHHHHHHHHHHCCCeeccCC-C---C-CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5422 134677888743 3456789999999998653221 1 1 235999999888999999999999988754
No 83
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.95 E-value=2.1e-25 Score=231.25 Aligned_cols=342 Identities=14% Similarity=0.074 Sum_probs=237.0
Q ss_pred CcccccccC---CChHHHHHHHHHHhccCC---CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHH
Q 010897 58 LNLASFVTT---WMEPECDKLVMASINKNY---VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (498)
Q Consensus 58 ~~~~~~~~~---~~~~~~~~~l~~~~~~n~---~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~ 131 (498)
++|.++.|. .+++.+.+++.+.++... ..|....+..++++.+.+++.+.+|.+ +. ..+++|+|+++|+.
T Consensus 79 i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~---~~v~~t~G~~~al~ 154 (448)
T 3aow_A 79 ISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QD---NDIMITSGSQQALD 154 (448)
T ss_dssp EECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TT---SEEEEESSHHHHHH
T ss_pred EeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Ch---hhEEEeCcHHHHHH
Confidence 345554443 356778888887776531 334444567888888888887777985 22 24999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhh----h--CCeE
Q 010897 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----E--NTIC 205 (498)
Q Consensus 132 la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~----~--~t~~ 205 (498)
+++.++.++ +++|+++.++|..+...++..|++++.+|++++ + +|+++|+++++ + ++++
T Consensus 155 ~~~~~l~~~-------------Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~L~~~l~~~~~~~~~~k~ 219 (448)
T 3aow_A 155 LIGRVFLNP-------------GDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE-G-MKVEILEEKLKELKSQGKKVKV 219 (448)
T ss_dssp HHHHHHCCT-------------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHcCC-------------CCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHhhhhccCCCCeE
Confidence 998887432 478999999999999999999999999999875 3 99999999998 5 6888
Q ss_pred E-EEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCC--ccccCCCCeeEEEEcCCccC
Q 010897 206 V-AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSGHKYG 279 (498)
Q Consensus 206 v-~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~--~~~~~~~~~dsi~~s~hK~l 279 (498)
| ++++++||||.+.+ +++|.++|+++ |++|++|++|+++.. ..... -..+.....+.+..+.+|++
T Consensus 220 v~~~~~~~NPtG~~~~~~~l~~i~~la~~~------~~~lI~De~y~~~~~--~g~~~~~~~~~~~~~~vi~~~S~SK~~ 291 (448)
T 3aow_A 220 VYTVPTFQNPAGVTMNEDRRKYLLELASEY------DFIVVEDDPYGELRY--SGNPEKKIKALDNEGRVIYLGTFSKIL 291 (448)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECSCTTCBC--SSCCCCCTGGGCTTSCEEEEEESTTTT
T ss_pred EEECCCCCCCcCCCCCHHHHHHHHHHHHHc------CCEEEEECCCccccC--CCCCCcCHHhcCCCCCEEEEccchhhc
Confidence 7 46789999999976 56899999999 999999999998752 11111 01122223567777889998
Q ss_pred CCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHHHHH
Q 010897 280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG----FEGYKNIMENCMGNARALR 355 (498)
Q Consensus 280 ~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg----~~g~~~~~~~~~~~a~~l~ 355 (498)
.++.++||++.+. +.+ +.+...... .+ ++.+ .+.|.++...+. .+.++++.+...++++++.
T Consensus 292 ~~GlriG~v~~~~-~l~-~~l~~~~~~-------~~--~~~~---~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~ 357 (448)
T 3aow_A 292 APGFRIGWMVGDP-GII-RKMEIAKQS-------TD--LCTN---VFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAML 357 (448)
T ss_dssp CGGGCCEEEEECH-HHH-HHHHHHHHH-------HH--SSCC---HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccEEEEEeCH-HHH-HHHHHHHHH-------hc--CCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 7555689998753 221 211110000 01 1111 223333333332 2335566666778899999
Q ss_pred HHHhc-CC-CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeec-CCCCCCCeeEEEEeecCCCCHHHHHH
Q 010897 356 EGLEK-TG-RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYT-MPANAENVAVLRVVVREDFSRSLVER 432 (498)
Q Consensus 356 ~~L~~-~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~-~~~~~~~~~~lRv~v~~~~t~~~~~~ 432 (498)
+.|++ +| ++++..+. ...++.++++. +.+..++.++|.++|+.+.... +.....+..++|+++.. .+.+++++
T Consensus 358 ~~L~~~~~~g~~~~~p~-~g~~~~v~~~~--~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~ 433 (448)
T 3aow_A 358 EALEEFMPEGVKWTKPE-GGMFIWVTLPD--GIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIME 433 (448)
T ss_dssp HHHHHHCCTTCEECCCS-BSSEEEEECST--TCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHH
T ss_pred HHHHHhCCCCeEEeCCC-ccEEEEEEcCC--CCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHH
Confidence 99987 56 58776443 46677778853 4678899999999998875432 22211245689999875 47899999
Q ss_pred HHHHHHHHHHHH
Q 010897 433 LISHIEEVLKEI 444 (498)
Q Consensus 433 l~~~l~~~l~~l 444 (498)
+++.|++++++.
T Consensus 434 ~~~~L~~~l~~~ 445 (448)
T 3aow_A 434 GIKRLAETIKEE 445 (448)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 84
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.95 E-value=7.2e-26 Score=231.87 Aligned_cols=326 Identities=12% Similarity=0.025 Sum_probs=230.9
Q ss_pred CChHHHHHHHHHHhccCCCC---CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVD---MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~ 143 (498)
+++|.+.+++.+.+...... +....+..+...++++++++++|.+. .+++++|++|+..++.++..+
T Consensus 73 ~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~~~~l~~~~~~--- 142 (409)
T 3kki_A 73 ANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE-------CLLSQSGWNANVGLLQTICQP--- 142 (409)
T ss_dssp TTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT---
T ss_pred cCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCe-------EEEecchHHHHHHHHHHhcCC---
Confidence 34688888888888763211 11122333444567778999999864 566677789998888876432
Q ss_pred HHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCHH
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK 222 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l~ 222 (498)
++.|+++.++|.++..+++..|++++.++. +|+++|++++++ ++++|+++.++|+||.+.|++
T Consensus 143 ----------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~ 206 (409)
T 3kki_A 143 ----------NTNVYIDFFAHMSLWEGARYANAQAHPFMH------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLA 206 (409)
T ss_dssp ----------TCEEEEETTSCHHHHHHHHHTTCEEEEECT------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHH
T ss_pred ----------CCEEEECCCcCHHHHHHHHHcCCeEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHH
Confidence 578999999999999999999999877653 689999999986 589999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCC-CCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccc
Q 010897 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (498)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~-~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~ 301 (498)
+|.++|+++ |++|++|++|+++............+.. +.+|++..+.+|++.++ .|+++.+. +.. +.+.
T Consensus 207 ~l~~la~~~------~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~-~~~-~~~~ 276 (409)
T 3kki_A 207 ELVNISKEF------GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR--AGAIWCNN-EVN-RCVP 276 (409)
T ss_dssp HHHHHHHHH------TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS--CEEEEESS-SGG-GTHH
T ss_pred HHHHHHHHc------CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC--ceEEEECH-HHH-HHHH
Confidence 999999999 9999999999875421111111111122 35789999999998765 47776543 322 2111
Q ss_pred cccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEec
Q 010897 302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381 (498)
Q Consensus 302 ~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (498)
.. ...+...++.+...+.+..+++..+... .+..++..+++++|.+.|++++ +++. + ..+++.+.++
T Consensus 277 ~~-------~~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~g-~~~~--~-~~~~~~~~~~ 343 (409)
T 3kki_A 277 FI-------SYPAIFSSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMARKLRIGLSQLG-LTIR--S-ESQIIGLETG 343 (409)
T ss_dssp HH-------CHHHHHSBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTT-CCCC--C-SSSEEEEEEE
T ss_pred Hh-------CcCccccCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcC-CccC--C-CCCEEEEEeC
Confidence 10 0011111222233444555555544322 5677788889999999999985 7655 2 4677888775
Q ss_pred CCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 382 DSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 382 ~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
. ..+..++.++|.++|+.+.....+....+..++|+++...++.++++++++.|+++++.
T Consensus 344 ~--~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 344 D--ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp S--HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 3 23456899999999998876665544456789999998888999999999999998864
No 85
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.95 E-value=1.2e-25 Score=229.09 Aligned_cols=336 Identities=11% Similarity=0.043 Sum_probs=234.7
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.++.....|... ..++++.+.+++++.+|.+.+. ..+++|+|+++|+.+++.++.++
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~v~~t~g~~~a~~~~~~~l~~~------ 112 (399)
T 1c7n_A 44 KNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQT---DWIINTAGVVPAVFNAVREFTKP------ 112 (399)
T ss_dssp CCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCG---GGEEEESSHHHHHHHHHHHHCCT------
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCCh---hhEEEcCCHHHHHHHHHHHhcCC------
Confidence 456788888888876533333332 6788888888888888854322 24899999999999988877432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec-CC-ccccCHHHHHHHhh-hCCeEEEEeeccCCcccccC---
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EG-YYVMNPVKAVELVD-ENTICVAAILGSTLTGEFED--- 220 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~-~~-~~~~d~~~L~~~i~-~~t~~v~~~~~~t~tG~~~~--- 220 (498)
+++|+++.++|..+..+++..|++++.+|++ ++ +|.+|+++|+++++ .++++|++++++||||.+.|
T Consensus 113 -------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 185 (399)
T 1c7n_A 113 -------GDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDE 185 (399)
T ss_dssp -------TCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHH
T ss_pred -------CCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHH
Confidence 4689999999999999999999999999985 32 46799999999998 67899999999999999988
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CC----CCeeEEEEcCCccCC-CCCCeEEEEEeCCC
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL----PLVKSINVSGHKYGL-VYAGVGWVVWRTKD 294 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~----~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~ 294 (498)
+++|.++|+++ |+++++|++|+++.. ..... ..+ .+ ...+.+..+.+|+++ ++.++|+++.++++
T Consensus 186 l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~ 256 (399)
T 1c7n_A 186 LQKIKDIVLKS------DLMLWSDEIHFDLIM--PGYEH-TVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPD 256 (399)
T ss_dssp HHHHHHHHHHS------SCEEEEECTTTTCBC--TTCCC-CCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHH
T ss_pred HHHHHHHHHHc------CCEEEEEcccccccc--CCCCc-ccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHH
Confidence 99999999999 999999999998752 11111 111 11 134577789999875 55678999876432
Q ss_pred CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeeCCCCc
Q 010897 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGRFEILSKDVGV 373 (498)
Q Consensus 295 ~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~ 373 (498)
.. +.+....... +. ++.+.....+..+++.. +.+.+++..++..++++++.+.|++ ++++++..+ ..
T Consensus 257 ~~-~~l~~~~~~~-------~~-~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~ 324 (399)
T 1c7n_A 257 IR-ERFTKSRDAT-------SG-MPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI--EG 324 (399)
T ss_dssp HH-HHHHHHHHHT-------TC-CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC--SB
T ss_pred HH-HHHHHHHhhc-------cc-CCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecC--Cc
Confidence 22 1111100000 00 12222223333333332 3456778888888999999999998 777876543 34
Q ss_pred cEE-EEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 374 PLV-AFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 374 ~~v-~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
+++ .++++.. +.+..++.++|. ++|+.+....... .....++|++++. +.++++++++.|++++++++
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 325 TYLQWIDFRAL-KMDHKAMEEFMIHKAQIFFDEGYIFG-DGGIGFERINLAA--PSSVIQESLERLNKALKDLK 394 (399)
T ss_dssp SSEEEEECGGG-CCCHHHHHHHHHHTTCCCCEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEcccC-CCCHHHHHHHHHHhCCEEEeCccccC-CCCCCeEEEEecc--CHHHHHHHHHHHHHHHHHHH
Confidence 555 4677531 256788999997 7898875432111 1234679999875 36888888888888887653
No 86
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.95 E-value=3e-25 Score=227.48 Aligned_cols=352 Identities=12% Similarity=0.041 Sum_probs=238.9
Q ss_pred cCCCCCcccccccC-CChHHHHHHHHHHhccC-CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHH
Q 010897 53 DGNPRLNLASFVTT-WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (498)
Q Consensus 53 ~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~ 130 (498)
+|+..+++.+..+. ++++.+.+++.+.+... ...|...++..++++.+.+++.+.+|.+.+.+ ..+++|+|+++|+
T Consensus 35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~--~~v~~t~g~~~a~ 112 (412)
T 2x5d_A 35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPE--SEAIVTIGSKEGL 112 (412)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTT--TSEEEESCHHHHH
T ss_pred cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCC--cCEEEcCChHHHH
Confidence 45555555555444 35678889888887653 22344445678888888888888779753210 1399999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCC-ccccCHHHHHHHhhhCCeEEEEe
Q 010897 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAI 209 (498)
Q Consensus 131 ~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~L~~~i~~~t~~v~~~ 209 (498)
.+++.++.++ +++|+++.++|..+...++..|++++.+|++++ ++.+|+++|++++++++++|+++
T Consensus 113 ~~~~~~~~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~ 179 (412)
T 2x5d_A 113 AHLMLATLDH-------------GDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG 179 (412)
T ss_dssp HHHHHHHCCT-------------TCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred HHHHHHhCCC-------------CCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence 9998876332 468999999999999999999999999999764 46789999999998889999999
Q ss_pred eccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--ccc-CCCCeeEEEEcCCccCC-CC
Q 010897 210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDF-RLPLVKSINVSGHKYGL-VY 282 (498)
Q Consensus 210 ~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~-~~~~~dsi~~s~hK~l~-~p 282 (498)
+++||||.+.| +++|.++|+++ |+++++|++|+++.. ...... ..+ .....+.+..+.||+++ ++
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 180 FPSNPTAQCVELDFFERVVALAKQY------DVMVVHDLAYADIVY--DGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEecccccccc--CCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 99999999965 68899999999 999999999998752 111110 111 11356888999999985 56
Q ss_pred CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010897 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG 362 (498)
Q Consensus 283 ~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~ 362 (498)
.++|+++.+. +.. +.+.....+. .++.+.....+...++.. +.+.+++..++..++++++.+.|++++
T Consensus 252 ~r~G~~~~~~-~~~-~~l~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g 319 (412)
T 2x5d_A 252 WRIGFMVGNP-ELV-SALARIKSYH---------DYGTFTPLQVAAIAALEG-DQQCVRDIARQYQQRRDVLVKGLREAG 319 (412)
T ss_dssp SCCEEEEECH-HHH-HHHHHHHHHH---------CCCCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEcCH-HHH-HHHHHHHhhh---------ccCCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6789998743 221 1111100000 012222222223333332 235577888888899999999999874
Q ss_pred CeEEeeCCCCccEEEEEecCCCCC---CHHHHHHHHHh-cCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHH
Q 010897 363 RFEILSKDVGVPLVAFSLKDSSAH---TVFEISEGLRK-FGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIE 438 (498)
Q Consensus 363 ~~~~~~~~~~~~~v~f~~~~~~~~---~~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~ 438 (498)
+++..+. ...++.++++. +. +..+++++|.+ +|+.+....... ..+..++|+++.. +.++++++++.|+
T Consensus 320 -~~~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~iRis~~~--~~~~l~~~l~~l~ 392 (412)
T 2x5d_A 320 -WMVENPK-ASMYVWAKIPE--PYAHLGSLEFAKKLLQDAKVSVSPGIGFG-DYGDDHVRFALIE--NRDRLRQAVRGIK 392 (412)
T ss_dssp -CCCCCCS-BSSEEEEECCT--TTGGGCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHH
T ss_pred -CEecCCC-eeeEEEEEcCC--ccCCCCHHHHHHHHHHHCCEEEeCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHH
Confidence 7765432 23356667742 34 67789999865 698875432211 1234679999875 7889998888888
Q ss_pred HHHHHHHc
Q 010897 439 EVLKEIES 446 (498)
Q Consensus 439 ~~l~~l~~ 446 (498)
++++.+..
T Consensus 393 ~~l~~~~~ 400 (412)
T 2x5d_A 393 AMFRADGL 400 (412)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 88876433
No 87
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.95 E-value=7.9e-26 Score=228.28 Aligned_cols=334 Identities=13% Similarity=0.072 Sum_probs=233.8
Q ss_pred CCCCCcccccccCC-ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHH
Q 010897 54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (498)
Q Consensus 54 ~~p~~~~~~~~~~~-~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~l 132 (498)
++..+++.+..+.. +++.+.+++.+.+......|....+..++++.+.+++.+.+|.+.+. ..+++|+|+++|+.+
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~~~a~~~ 104 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIP---DNIIITGGSSLGLFF 104 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCG---GGEEEESSHHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---hhEEECCChHHHHHH
Confidence 44444455544432 46788888888876544344444567889999999998888866432 249999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeecc
Q 010897 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS 212 (498)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~ 212 (498)
++.++.++ +++|++++++|.++...++..|++++.+| +|+++|++++++++++|++++++
T Consensus 105 ~~~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~~~~~~v~~~~p~ 164 (370)
T 2z61_A 105 ALSSIIDD-------------GDEVLIQNPCYPCYKNFIRFLGAKPVFCD-------FTVESLEEALSDKTKAIIINSPS 164 (370)
T ss_dssp HHHHHCCT-------------TCEEEEESSCCTHHHHHHHHTTCEEEEEC-------SSHHHHHHHCCSSEEEEEEESSC
T ss_pred HHHHhcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEeC-------CCHHHHHHhcccCceEEEEcCCC
Confidence 98887432 46899999999999999999999988887 78999999998889999999999
Q ss_pred CCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCC-CCCCeEEEEE
Q 010897 213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVW 290 (498)
Q Consensus 213 t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~ 290 (498)
||||.+.|++ |.++|+++ |+++++|++|+++...- .+..-..+ .....|.+..+.||+++ ++.++|+++.
T Consensus 165 nptG~~~~~~-l~~~~~~~------~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 236 (370)
T 2z61_A 165 NPLGEVIDRE-IYEFAYEN------IPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVIS 236 (370)
T ss_dssp TTTCCCCCHH-HHHHHHHH------CSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEEC
T ss_pred CCcCcccCHH-HHHHHHHc------CCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCccceEEEEEE
Confidence 9999999999 99999999 99999999999875310 01000112 13457889999999985 4445899886
Q ss_pred eCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 010897 291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL---GFEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (498)
Q Consensus 291 ~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l---g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (498)
++ + +.+.+....... .++. ..+.++++...+ +.+.+++..++..++++++.+.|+++ ++++.
T Consensus 237 ~~-~-~~~~~~~~~~~~---------~~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 301 (370)
T 2z61_A 237 ND-E-IIEAILKLQQNL---------FISA---PTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVN 301 (370)
T ss_dssp CH-H-HHHHHHHHHHHH---------TSSS---CHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCC
T ss_pred CH-H-HHHHHHHHHhhc---------ccCC---CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 54 2 111111000000 0122 223344444444 34556778888889999999999988 47765
Q ss_pred eCCCCccEEEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 368 SKDVGVPLVAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
.+. ...++.+.++. +..++.++|. ++|+.+....... ..+..++|+++. .+.++++++++.|++++
T Consensus 302 ~~~-~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~f~-~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l 368 (370)
T 2z61_A 302 NPI-GAYYVFPNIGE----DGREFAYKLLKEKFVALTPGIGFG-SKGKNYIRISYA--NSYENIKEGLERIKEFL 368 (370)
T ss_dssp CCC-BTTEECCBCSS----CHHHHHHHHHHHHCEECEEGGGGC-GGGSSBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CCC-cceEEEEecCC----CHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEEe--CCHHHHHHHHHHHHHHH
Confidence 432 33334445532 6778999997 7898875432111 113467999987 58888888888887765
No 88
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.94 E-value=1.7e-25 Score=226.26 Aligned_cols=346 Identities=12% Similarity=-0.015 Sum_probs=233.9
Q ss_pred cCCCCCcccccccC-CChHHHHHHHHHHhccC-CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHH
Q 010897 53 DGNPRLNLASFVTT-WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (498)
Q Consensus 53 ~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~ 130 (498)
+|+..+++.+..+. +++|.+.+++.+.+... ...|...++..++++.+.+++.+.+|.+.+.. ..+++|+|+++++
T Consensus 23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~--~~v~~~~g~~~a~ 100 (376)
T 2dou_A 23 RGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPR--REALALIGSQEGL 100 (376)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTT--TSEEEESSHHHHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccEEEcCCcHHHH
Confidence 34444555554443 34678899998888653 22333334567788888888877779863211 1389999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEee
Q 010897 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL 210 (498)
Q Consensus 131 ~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~ 210 (498)
.+++.++.++ +++|+++.++|..+...++..|++++.+|+ ++++.+|+++|++++++++++|++++
T Consensus 101 ~~~~~~l~~~-------------gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~v~l~~ 166 (376)
T 2dou_A 101 AHLLLALTEP-------------EDLLLLPEVAYPSYFGAARVASLRTFLIPL-REDGLADLKAVPEGVWREAKVLLLNY 166 (376)
T ss_dssp HHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHTTCEEEEECB-CTTSSBCGGGSCHHHHHHEEEEEECS
T ss_pred HHHHHHhcCC-------------CCEEEECCCCcHhHHHHHHHcCCEEEEeeC-CCCCCCCHHHHHHhhccCceEEEECC
Confidence 9888876432 468999999999999999999999999998 44578999999999988899999999
Q ss_pred ccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCC-CCCCe
Q 010897 211 GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGV 285 (498)
Q Consensus 211 ~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~-~p~g~ 285 (498)
++||||.+.| +++|.++|+++ |+++++|++|+++...- .+.....+ .....+.+..+.+|+++ ++.++
T Consensus 167 p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 239 (376)
T 2dou_A 167 PNNPTGAVADWGYFEEALGLARKH------GLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFRL 239 (376)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCC
T ss_pred CCCCcCccCCHHHHHHHHHHHHHc------CCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhhee
Confidence 9999999976 67888999999 99999999999875210 00000111 11235677788999875 55678
Q ss_pred EEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 010897 286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE 365 (498)
Q Consensus 286 g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 365 (498)
|+++.+. +.. +.+...... ..++.+.....+...++.. +.+.+++..++..++++++.+.|+++ ++
T Consensus 240 G~~~~~~-~~~-~~l~~~~~~---------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~ 305 (376)
T 2dou_A 240 GFALGSE-EAL-ARLERVKGV---------IDFNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LS 305 (376)
T ss_dssp EEEEECH-HHH-HHHHHHHHH---------HCCCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SE
T ss_pred EEEecCH-HHH-HHHHHHHHh---------cccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 9987542 221 111100000 0011122222223333322 24567778888889999999999887 66
Q ss_pred EeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+..+. ...++.++++. +.+..++.++|.++|+.+....... ..+..++|++++. +.++++++++.|++++
T Consensus 306 ~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~f~-~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 306 LLPPR-ATMYLWGRLPE--GVDDLEFGLRLVERGVALAPGRGFG-PGGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp ECCCC-BSSEEEEECCT--TCCHHHHHHHHHHTTEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred ccCCC-eeEEEEEECCC--CCCHHHHHHHHHHCCEEEcCchhhC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 65432 33456677743 4577889999999998875432211 1234679999864 6777877777766543
No 89
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.94 E-value=5.4e-25 Score=222.22 Aligned_cols=316 Identities=13% Similarity=0.071 Sum_probs=228.9
Q ss_pred CChHHHHHHHHHHhccC---CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~ 143 (498)
++++.+.+++.+.++.. ...|..... .++++.+.+++.+.+|++.+. ..+++|+|+++++.+++.++.++
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~---~~v~~~~G~~~al~~~~~~l~~~--- 115 (369)
T 3cq5_A 43 PPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTR---DNLWAANGSNEILQQLLQAFGGP--- 115 (369)
T ss_dssp CCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHHHHHHHHCST---
T ss_pred CCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCCh---HhEEECCChHHHHHHHHHHhcCC---
Confidence 45678888888777552 223332223 688888888888887765322 24899999999998888776432
Q ss_pred HHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCHH
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK 222 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l~ 222 (498)
+++|++++++|.++...++..|++++.+|.+++ +.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus 116 ----------gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~ 184 (369)
T 3cq5_A 116 ----------GRTALGFQPSYSMHPILAKGTHTEFIAVSRGAD-FRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLD 184 (369)
T ss_dssp ----------TCEEEEEESSCTHHHHHHHHTTCEEEEEECCTT-SSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHH
T ss_pred ----------CCEEEEcCCChHHHHHHHHHcCCEEEEecCCcC-CCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence 468999999999999999999999999998754 78999999999987 899999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCC-eeEEEEcCCccCC-CCCCeEEEEEeCCCCCCccc
Q 010897 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL-VKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~-~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~ 300 (498)
++.++++.+ ++++++|++|+++..+ +.......... .+.+..+.||+++ ++.++|+++.++ +.. +.+
T Consensus 185 ~l~~l~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~-~~l 253 (369)
T 3cq5_A 185 DVERIINVA------PGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP-AFI-DAV 253 (369)
T ss_dssp HHHHHHHHC------SSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT-HHH-HHH
T ss_pred HHHHHHHhC------CCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCH-HHH-HHH
Confidence 999999999 8999999999987521 11110111112 4678889999985 556689998753 221 111
Q ss_pred ccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEE
Q 010897 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFS 379 (498)
Q Consensus 301 ~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~ 379 (498)
.. .... ++.+ .+.++++...+. .+.+++..++..++++++.+.|++.+ +++..+ ..+++.+.
T Consensus 254 ~~-------~~~~----~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~ 316 (369)
T 3cq5_A 254 ML-------VRLP----YHLS---ALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELG-YAVVPS--ESNFVFFG 316 (369)
T ss_dssp HT-------TSCT----TCSC---HHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHT-CEEECC--SSSEEEEE
T ss_pred HH-------cCCC----CCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCC--CCeEEEEE
Confidence 10 0011 1122 223333333332 24467778888889999999998864 887632 56788887
Q ss_pred ecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 380 LKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 380 ~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
++ .+..++.++|.++|+.+... ....++|+++. +.++++++++.|++++
T Consensus 317 ~~----~~~~~l~~~l~~~gi~v~~~------~~~~~iRis~~---~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 317 DF----SDQHAAWQAFLDRGVLIRDV------GIAGHLRTTIG---VPEENDAFLDAAAEII 365 (369)
T ss_dssp CC----SSHHHHHHHHHHTTEECBCC------SCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CC----CCHHHHHHHHHHCCEEEEEC------CCCCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence 74 36778999999999887543 11357999987 7889999998888775
No 90
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.94 E-value=2.6e-26 Score=230.01 Aligned_cols=330 Identities=15% Similarity=0.065 Sum_probs=233.6
Q ss_pred cCCChHHHHHHHHHHhcc---CCCC----CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceee-ecChhHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLA 136 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~---n~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~g~sea~~la~~a 136 (498)
|++.++++.++|.+.+.. |+.. ...++...++-+++++.+++++|.+.+ ..++| |.|+|+++.+++..
T Consensus 13 pt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~----~~v~f~t~~~T~a~n~~~~~ 88 (361)
T 3m5u_A 13 PSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD----YEVLFLQGGASLQFAMIPMN 88 (361)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCcHHHHHHHHHHh
Confidence 667788999999887653 2221 112345567777899999999999742 23777 99999999988876
Q ss_pred HHHHHHHHHHhcCCCCCC-cEEEEcCCchhHHHHHHHHcCCeeEEEEecCCc-cccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 137 FKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVELKEVKLEEGY-YVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~-~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
+. + | ++ ..|+.+..+|. |...++..|++++.+++++++ +.++++. + |+++|++|.+++.+|.
T Consensus 89 ~~-~--------~---~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~ 152 (361)
T 3m5u_A 89 LA-L--------N---GVCEYANTGVWTKK-AIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTI 152 (361)
T ss_dssp HC-C--------S---SCEEEEECSHHHHH-HHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETT
T ss_pred cC-C--------C---CeEEEEeCCHHHHH-HHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCC
Confidence 63 1 1 11 13444555564 445567789999999998753 2256666 3 8889999999999999
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCC
Q 010897 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (498)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~ 294 (498)
||.+.|. +++ + ++++|||++++.+..|+ |+ ..+|++.+++|||+ +|.|+|+++++++.
T Consensus 153 tG~~~~~-----i~~-~------~~~~~vD~~q~~g~~~i-------d~--~~~d~~~~s~~K~~-gp~G~g~l~~~~~~ 210 (361)
T 3m5u_A 153 YGTQYQN-----YPK-T------KTPLIVDASSDFFSRKV-------DF--SNIALFYGGVQKNA-GISGLSCIFIRKDM 210 (361)
T ss_dssp TTEECSS-----CCC-C------SSCEEEECGGGTTSSCC-------CC--TTEEEEEEETTTTS-SCTTCEEEEEEHHH
T ss_pred cceeCCc-----ccc-c------CCEEEEEcccccCCCCC-------Cc--ccCCEEEEechhcc-CCCccEEEEEcHHH
Confidence 9998652 332 5 89999999998776544 22 25899999999999 59999999998642
Q ss_pred CCCcccc-cccCccCCC--CCCccccCCCchHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EEeeC
Q 010897 295 DLPDELV-FHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRF-EILSK 369 (498)
Q Consensus 295 ~l~~~~~-~~~~yl~~~--~~~~~l~~sr~~~~~~a~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~ 369 (498)
+....+ ..+.|+... .......+|.+...++++.++++.+... |+.++.++..+++++|.+.|++++++ +++.+
T Consensus 211 -~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~ 289 (361)
T 3m5u_A 211 -LERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD 289 (361)
T ss_dssp -HHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC
T ss_pred -HhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC
Confidence 111000 111222100 0011122677778888999999988877 89999999999999999999999876 65433
Q ss_pred CC-C-ccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 370 DV-G-VPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 370 ~~-~-~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+. . ..+++|.+++..+.+ .++...|.++|+.++.... ....+|+|++..+|.+|+++|++.|+++.++
T Consensus 290 ~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~-----~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 290 KKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHR-----ILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp GGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCT-----TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCC-----ccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 21 2 458999996422344 4788999999988643211 1134999999999999999999999988764
No 91
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=1.3e-25 Score=231.31 Aligned_cols=334 Identities=15% Similarity=0.105 Sum_probs=232.8
Q ss_pred ChHHHHHHHHHHhccCC---CCCcCCcchHHHHHHHHHHHHHHcCCC-CCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNY---VDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~---~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~ 143 (498)
+++.+.+++.+.++.+. ..|....+..++++++.+++.+.+|++ .+. ..+++|+|+++++.+++.++.++
T Consensus 59 ~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~---~~v~~t~G~~~al~~~~~~l~~~--- 132 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDE---DNLIFTVGSQQALDLIGKLFLDD--- 132 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCG---GGEEEEEHHHHHHHHHHHHHCCT---
T ss_pred CHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCc---ccEEEeccHHHHHHHHHHHhCCC---
Confidence 56778888888876531 334444567788888888887777864 321 24899999999999888876432
Q ss_pred HHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh--------CCeEE-EEeeccCC
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--------NTICV-AAILGSTL 214 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~--------~t~~v-~~~~~~t~ 214 (498)
+++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++ ++++| ++++++||
T Consensus 133 ----------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 133 ----------ESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-G-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp ----------TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred ----------CCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 468999999999999999999999999999875 3 999999999976 68887 47899999
Q ss_pred cccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCC-c-cccCCCCeeEEEEcCCccCCCCCCeEEEE
Q 010897 215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFRLPLVKSINVSGHKYGLVYAGVGWVV 289 (498)
Q Consensus 215 tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~-~~~~~~~~dsi~~s~hK~l~~p~g~g~~~ 289 (498)
||.+.| +++|.++|+++ |+++++|++|+++.. ..... . ..+.....+.+..+.+|+++++.++|+++
T Consensus 201 tG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~ 272 (425)
T 1vp4_A 201 AGVTTSLEKRKALVEIAEKY------DLFIVEDDPYGALRY--EGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVA 272 (425)
T ss_dssp TCCCCCHHHHHHHHHHHHHT------TCEEEEECSSTTCBC--SSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHc------CCEEEEECCCccccC--CCCCCcCHHHhCCCCCEEEEeccccccccccceEEEe
Confidence 999976 56888999999 999999999998752 11110 0 01112235677889999987556689998
Q ss_pred EeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHHHHHHHHhcC-C--
Q 010897 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG----FEGYKNIMENCMGNARALREGLEKT-G-- 362 (498)
Q Consensus 290 ~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg----~~g~~~~~~~~~~~a~~l~~~L~~~-~-- 362 (498)
.+. +.+ +.+..... .++ ++.+ .+.++++...+. .+.+++..++..++++++.+.|++. +
T Consensus 273 ~~~-~~~-~~l~~~~~-------~~~--~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 338 (425)
T 1vp4_A 273 GSK-EFI-RKIVQAKQ-------SAD--LCSP---AITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDI 338 (425)
T ss_dssp CCH-HHH-HHHHHHHH-------HHH--SSCC---HHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred eCH-HHH-HHHHHHhh-------hhc--CCCC---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 652 221 11110000 001 1112 223333333332 2345667777788999999999874 4
Q ss_pred -CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeec-CCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 363 -RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYT-MPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 363 -~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~-~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
++++..+. ..+++.++++. +.+..++.++|.++|+.+.... +.....+..++|+++... +.++++++++.|+++
T Consensus 339 ~g~~~~~~~-~g~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~ 414 (425)
T 1vp4_A 339 PGVKWVKSE-GGLFIWLTLPE--GFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREV 414 (425)
T ss_dssp TTCEECCCS-BSSEEEEECCT--TCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred CceEEecCC-ccEEEEEEcCC--CCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHH
Confidence 48776443 46678888853 3455689999999998875432 211112356899999753 889999999999999
Q ss_pred HHHHH
Q 010897 441 LKEIE 445 (498)
Q Consensus 441 l~~l~ 445 (498)
++.+.
T Consensus 415 l~~~~ 419 (425)
T 1vp4_A 415 VLEYG 419 (425)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 92
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=1.8e-25 Score=226.72 Aligned_cols=315 Identities=10% Similarity=0.040 Sum_probs=226.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHH--
Q 010897 90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW-- 167 (498)
Q Consensus 90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~-- 167 (498)
++...++.+++++++++++|.+. ..++|+|||+|+..++..+ . .+++|+++++.|++.
T Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~sgt~a~~~~~~~~-~-------------~gd~vi~~~~~~~~~~~ 89 (379)
T 3ke3_A 30 SKAFQEVMNDLLSNLKTVYNAEA------AVIIPGSGTYGMEAVARQL-T-------------IDEDCLIIRNGWFSYRW 89 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSE------EEEEESCHHHHHHHHHHHH-C-------------TTCEEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC------EEEEcCChhHHHHHHHHhC-C-------------CCCeEEEEeCCchhHHH
Confidence 45666788899999999999862 3888899999998766432 1 146898888888753
Q ss_pred HHHHHHcCC--eeEEEEecCC-------c-cccCHHHHHHHhh-hCCeEEEEeeccCCcccccC---HHHHHHHHHHhhc
Q 010897 168 EKFARYFEV--ELKEVKLEEG-------Y-YVMNPVKAVELVD-ENTICVAAILGSTLTGEFED---VKLLHDLLTKKNE 233 (498)
Q Consensus 168 ~~~~~~~g~--~~~~v~~~~~-------~-~~~d~~~L~~~i~-~~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~ 233 (498)
...++..|+ +++.++.+.+ . ..+|++++++++. .+|++|++++++|++|.+.| +++|.++|+++
T Consensus 90 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~-- 167 (379)
T 3ke3_A 90 TQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-- 167 (379)
T ss_dssp HHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT--
T ss_pred HHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc--
Confidence 355666674 6777876431 1 2589999999996 47999999999999999999 99999999999
Q ss_pred ccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccccc--ccCccCC--
Q 010897 234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF--HINYLGS-- 309 (498)
Q Consensus 234 ~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~--~~~yl~~-- 309 (498)
|+++|+|++++ +..++ ++...++|++++++||++++|.|+|+++.++. .+ +.+.. ...|...
T Consensus 168 ----~~~li~D~~~~-g~~~~-------~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~-~~l~~~~~~~~~~~~~ 233 (379)
T 3ke3_A 168 ----GGLLVIDCIAS-GCVWL-------DMKELGIDVLISAPQKGWSSTPCAGLVMLSAA-AI-KKVESTESNCFSLDLK 233 (379)
T ss_dssp ----TCEEEEECTTC-TTCCC-------CHHHHTCSEEEECTTTTTCSCCCEEEEEECHH-HH-HHHHTCCCSCSTTCHH
T ss_pred ----CCEEEEEeccc-CCccc-------cccccCCCEEEecchhhcCCCCceEEEEECHH-HH-HhhhcCCCCceeecHH
Confidence 99999999998 43322 12112589999999999999999999987653 11 11100 0111100
Q ss_pred ---------CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC-CccE-EEE
Q 010897 310 ---------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-GVPL-VAF 378 (498)
Q Consensus 310 ---------~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~-~~~~-v~f 378 (498)
........++.+...+.++.+++..+..+|+.++.++..+++++|.+.|++++ ++++.++. ..+. +.+
T Consensus 234 ~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~~~~i~~~ 312 (379)
T 3ke3_A 234 QWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKG-IESVAAEGFEAPGVVVS 312 (379)
T ss_dssp HHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCBCSSEEEE
T ss_pred HHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CEecCCccccCceEEEE
Confidence 00001112466666777788888888888899999999999999999999985 88765532 3443 444
Q ss_pred EecCCCCCCHHHHHHHHHhcCcEeeeecCCCC--CCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 379 SLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN--AENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 379 ~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~--~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
..++ ....+.+.|.++|+.+.....+.. .....++|++++..+|.++++++++.|+++++++.
T Consensus 313 ~~~~----~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 313 YTER----DDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp ECSC----HHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccCC----cchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 4321 122336789999998765432211 12356899999888899999999999999998764
No 93
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.94 E-value=1.8e-25 Score=226.76 Aligned_cols=324 Identities=13% Similarity=0.051 Sum_probs=223.8
Q ss_pred CChHHHHHHHHHHhccCCCC--CcCCc-chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVD--MDEYP-VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~--~~~~~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~ 143 (498)
++++.+.+++.+.+...... ...++ +......++++.+++++|.+. .+++++|++++.+++.++.++
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~~~~~~~~~~~--- 122 (384)
T 1bs0_A 53 SHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR-------ALLFISGFAANQAVIAAMMAK--- 122 (384)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT---
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc-------EEEeCCcHHHHHHHHHHhCCC---
Confidence 35678888888877652111 11121 233455577778999999852 666666699999888776322
Q ss_pred HHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhC---CeEEEEeeccCCcccccC
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN---TICVAAILGSTLTGEFED 220 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~---t~~v~~~~~~t~tG~~~~ 220 (498)
++.|+++.+.|.++..+++..|++++.+|. +|+++|+++++++ +++|++++++||||.+.|
T Consensus 123 ----------gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~ 186 (384)
T 1bs0_A 123 ----------EDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP 186 (384)
T ss_dssp ----------TCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC
T ss_pred ----------CcEEEEcccccHHHHHHHHHcCCCEEEeCC------CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC
Confidence 468999999999999999999999988873 5799999999763 788888999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~ 300 (498)
+++|.++|+++ |+++++|++|+.+..+.........++ ...|++..+.||+++ +.| |+++.++ +.+ +.+
T Consensus 187 l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~-~~G-G~~~~~~-~~~-~~l 255 (384)
T 1bs0_A 187 LAEIQQVTQQH------NGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFG-VSG-AAVLCSS-TVA-DYL 255 (384)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTS-SCC-EEEEECH-HHH-HHH
T ss_pred HHHHHHHHHHc------CcEEEEECCcccceecCCCCchHHhcC-CCCcEEEeeccchhh-ccC-cEEEeCH-HHH-HHH
Confidence 99999999999 999999999976542100011111122 246888899999986 666 8888643 221 111
Q ss_pred ccc-cCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEE
Q 010897 301 VFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFS 379 (498)
Q Consensus 301 ~~~-~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~ 379 (498)
... ..|.. .++.+.....+..++++.+.....++..++..++++++.+.|++++ +++.. ...+++.+.
T Consensus 256 ~~~~~~~~~--------~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~--~~~~~~~~~ 324 (384)
T 1bs0_A 256 LQFARHLIY--------STSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-FTLAD--SCSAIQPLI 324 (384)
T ss_dssp HHHCHHHHS--------SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-CEECS--CCSSBCCEE
T ss_pred HHhchhhhc--------CCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-CcccC--CCCCEEEEE
Confidence 110 11111 1122233444444555544321456788888999999999999985 88763 256777777
Q ss_pred ecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 380 LKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 380 ~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
++. ..+..++.++|.++|+.+.....+....+..++|++++..++.++++++++.|+++
T Consensus 325 ~~~--~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 325 VGD--NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EES--HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred eCC--HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 742 24567899999999998765443322234578999998878999999888888754
No 94
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=8.6e-25 Score=222.24 Aligned_cols=335 Identities=9% Similarity=-0.012 Sum_probs=231.1
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHH-HHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTE-LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~-le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~ 145 (498)
++++.+.+++.+.++.....|... ..+ +++++.+++.+.+|++.+. ..+++|+|+++|+.+++.++.++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~---~~v~~t~g~~~al~~~~~~l~~~----- 110 (390)
T 1d2f_A 41 ATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDS---QTVVYGPSVIYMVSELIRQWSET----- 110 (390)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCG---GGEEEESCHHHHHHHHHHHSSCT-----
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCH---HHEEEcCCHHHHHHHHHHHhcCC-----
Confidence 456889999988886543333332 556 8888888888888854322 24899999999999888876432
Q ss_pred HhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCC--ccccCHHHHHHHhhh-CCeEEEEeeccCCcccccC--
Q 010897 146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDE-NTICVAAILGSTLTGEFED-- 220 (498)
Q Consensus 146 ~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~-- 220 (498)
+++|+++.++|..+...++..|++++.+|++++ +|.+|+++|++++++ ++++|++++++||||.+.|
T Consensus 111 --------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~ 182 (390)
T 1d2f_A 111 --------GEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCD 182 (390)
T ss_dssp --------TCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTT
T ss_pred --------CCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHH
Confidence 468999999999999999999999999998642 467999999999986 7899999999999999976
Q ss_pred -HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCC-CC-eeEEEEcCCccCC-CCCCeEEEEEeCCCCC
Q 010897 221 -VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PL-VKSINVSGHKYGL-VYAGVGWVVWRTKDDL 296 (498)
Q Consensus 221 -l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~-~~-~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l 296 (498)
+++|.++|+++ |+++++|++|+++.. ..........+ +. .|. ..+.+|++. ++.++|++++++++..
T Consensus 183 ~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~ 253 (390)
T 1d2f_A 183 ELEIMADLCERH------GVRVISDEIHMDMVW--GEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSR 253 (390)
T ss_dssp HHHHHHHHHHHT------TCEEEEECTTTTCBC--SSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHH
T ss_pred HHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHH
Confidence 88999999999 999999999998752 11111101112 12 255 889999885 5667899997653322
Q ss_pred CcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeeCCCCccE
Q 010897 297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGRFEILSKDVGVPL 375 (498)
Q Consensus 297 ~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~ 375 (498)
..+..... +. ..+ ++.+.....+..+++.. +.+.+++..++..++++++.+.|++ ++++++..+ ..++
T Consensus 254 -~~~~~~~~--~~--~~~---~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~ 322 (390)
T 1d2f_A 254 -DAYLSALK--GR--DGL---SSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIP--QSTY 322 (390)
T ss_dssp -HHHHHHHH--TT--SCC---CSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC--SBCS
T ss_pred -HHHHHHHh--hh--ccc---CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC--CccE
Confidence 11111000 00 000 12222233333334432 3455777888888899999999998 777776543 3444
Q ss_pred E-EEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 376 V-AFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 376 v-~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+ .++++.. +.+..++.+.|. ++|+.+....... .....++|++++. +.+++++.++.|++++++
T Consensus 323 ~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 323 LAWLDLRPL-NIDDNALQKALIEQEKVAIMPGYTYG-EEGRGFVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp EEEEECGGG-CCCHHHHHHHHHHTTCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcccc-CCCHHHHHHHHHHHcCEEeeCccccC-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 4 4677431 256788999999 6898875432211 1234679999875 567888888888777754
No 95
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.94 E-value=3e-25 Score=225.93 Aligned_cols=348 Identities=14% Similarity=0.020 Sum_probs=235.2
Q ss_pred CCCCCcccccccCC-ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCC-CCCCCCcceeeecChhHHHH
Q 010897 54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAIM 131 (498)
Q Consensus 54 ~~p~~~~~~~~~~~-~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~g~sea~~ 131 (498)
++..+++.+..+.. ++|.+.+++.+.+.. ...|....+..++++++.+++++.+|.+ .+.+ ..+++|+|+++++.
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~--~~i~~t~g~~~al~ 105 (396)
T 3jtx_A 29 GMEAVPLHIGEPKHPTPKVITDALTASLHE-LEKYPLTAGLPELRQACANWLKRRYDGLTVDAD--NEILPVLGSREALF 105 (396)
T ss_dssp TCCCEECSCCSCCSCCCHHHHHHHHHTGGG-GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTT--TSEEEESSHHHHHH
T ss_pred CCCeEEeCCcCCCCCCCHHHHHHHHHHhhh-ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCC--CeEEEcCCcHHHHH
Confidence 44555566555443 467888988888753 3334444566889999999999999975 2211 14999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeec
Q 010897 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG 211 (498)
Q Consensus 132 la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~ 211 (498)
+++.++..+ |...++++|+++.++|..+...++..|++++.++++++++.+|+++|++++++++++|++++|
T Consensus 106 ~~~~~~~~~--------g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p 177 (396)
T 3jtx_A 106 SFVQTVLNP--------VSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSP 177 (396)
T ss_dssp HHHHHHCCC-----------CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESS
T ss_pred HHHHHHhCC--------CCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECC
Confidence 988887432 100012689999999999999999999999999997666789999999999989999999999
Q ss_pred cCCcccccCHHH---HHHHHHHhhcccCCCceEEEecCcccccccccC-CCCcc-c----cC-CCCeeEEEEcCCc-cCC
Q 010897 212 STLTGEFEDVKL---LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLEW-D----FR-LPLVKSINVSGHK-YGL 280 (498)
Q Consensus 212 ~t~tG~~~~l~~---I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~-~~~~~-~----~~-~~~~dsi~~s~hK-~l~ 280 (498)
+||||.+.|.++ |.++|+++ |+++++|++|+++.. .. ..... . +. ....+.+..+.+| ++.
T Consensus 178 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 249 (396)
T 3jtx_A 178 NNPSGSVLDLDGWKEVFDLQDKY------GFIIASDECYSEIYF--DGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV 249 (396)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH------CCEEEEECTTTTCCS--TTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCchHHhhhhhcccccCcEEEEeccccccCC
Confidence 999999976555 88999999 999999999998652 11 01000 0 00 1345677889999 567
Q ss_pred CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q 010897 281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360 (498)
Q Consensus 281 ~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 360 (498)
++.++||++.+ ++.. ..+.....+. .++.+.....+...++.. .+.+.+..++..++++++.+.|++
T Consensus 250 ~G~r~G~~~~~-~~~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~ 316 (396)
T 3jtx_A 250 PGLRSGFVAGD-AELL-KNFLLYRTYH---------GSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQ 316 (396)
T ss_dssp GGGCCEEEEEC-HHHH-HHHHHHHHHH---------TCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceEEEEeC-HHHH-HHHHHHHhhc---------ccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77889998753 2221 1111000000 012222233333333332 345677788888899999999987
Q ss_pred CCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCC-----CCCeeEEEEeecCCCCHHHHHHHH
Q 010897 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPAN-----AENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~-----~~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
. +.+..+ ....++.+.++. .+..+++++|. ++|+.+........ ..+..++|+++.. +.+++++++
T Consensus 317 ~--~~~~~~-~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l 388 (396)
T 3jtx_A 317 V--FDVKLP-DASFYIWLKVPD---GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAA 388 (396)
T ss_dssp T--SCCCCC-SSSSEEEEECTT---SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHH
T ss_pred c--CCccCC-CeeEEEEEECCC---CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHH
Confidence 6 233332 245566677743 46778999985 56988754332111 1345789999864 888888887
Q ss_pred HHHHHHH
Q 010897 435 SHIEEVL 441 (498)
Q Consensus 435 ~~l~~~l 441 (498)
+.|++++
T Consensus 389 ~~l~~~l 395 (396)
T 3jtx_A 389 EDIVSLY 395 (396)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 7776653
No 96
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=2.4e-25 Score=228.68 Aligned_cols=339 Identities=11% Similarity=0.040 Sum_probs=232.2
Q ss_pred ChHHHHHHHHHHhccCCCC-CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHH
Q 010897 68 MEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKR 145 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~~~ 145 (498)
.++.+.+++.+.+...... +....+..++.+++++.+++++|.+. .+++++|++|+.+++.++ ..+
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-------~i~~~~gt~al~~~~~~~~~~~----- 81 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPY-------CVPTTSGSTALMLALEALGIGE----- 81 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCCT-----
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCCC-----
Confidence 3578888888887664332 33334445566778888999999863 778888999999988876 221
Q ss_pred HhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHH
Q 010897 146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 225 (498)
Q Consensus 146 ~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~ 225 (498)
+++|+++.++|.++..+++..|++++.++++++++.+|+++|+++++++|++|++ +++||...|+++|.
T Consensus 82 --------gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~~~~G~~~~~~~i~ 150 (418)
T 2c81_A 82 --------GDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIP---VHLFGSMANMDEIN 150 (418)
T ss_dssp --------TCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECC---BCCTTCCCCHHHHH
T ss_pred --------cCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEE---eCCcCCcccHHHHH
Confidence 4689999999999999999999999999998655889999999999888888765 45899999999999
Q ss_pred HHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccC
Q 010897 226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305 (498)
Q Consensus 226 ~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~ 305 (498)
++|+++ |++||+|++|+.+.. +..... .....++++++++||++.++ ++|+++.++++.. +.+.....
T Consensus 151 ~~~~~~------~~~li~D~a~~~~~~-~~~~~~---~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~-~~~~~~~~ 218 (418)
T 2c81_A 151 EIAQEH------NLFVIEDCAQSHGSV-WNNQRA---GTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLF-ELIQQLRA 218 (418)
T ss_dssp HHHHHT------TCEEEEECTTCTTCE-ETTEET---TSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHH-HHHHHHHB
T ss_pred HHHHHC------CCEEEEECcccccCc-cCCEec---ccccceEEEeccCCcccCCC-CeEEEEECCHHHH-HHHHHHHH
Confidence 999999 999999999988752 111111 01224777888889998774 7788876544321 11110000
Q ss_pred ccCC-------CCCCcc-------ccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC
Q 010897 306 YLGS-------DQPTFT-------LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV 371 (498)
Q Consensus 306 yl~~-------~~~~~~-------l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 371 (498)
+... ....+. +-+.......+. +++.....+.++++.++..++++++.+.|++++++++..++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 296 (418)
T 2c81_A 219 DSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQ--SAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPP 296 (418)
T ss_dssp TTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCT
T ss_pred hCccccccccccccchhhccccccccCcCCCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCC
Confidence 0000 000010 001110011111 122212234567788888889999999999998898874332
Q ss_pred C----c-cEEEEEecCC--CCCCHHHHHHHHHhc-CcE---eeeecCCCCCC------------------------C---
Q 010897 372 G----V-PLVAFSLKDS--SAHTVFEISEGLRKF-GWI---VPAYTMPANAE------------------------N--- 413 (498)
Q Consensus 372 ~----~-~~v~f~~~~~--~~~~~~~l~~~L~~~-G~~---v~~~~~~~~~~------------------------~--- 413 (498)
. . .++.+++++. .+.+..++.+.|.++ |+. +..+..|.... +
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (418)
T 2c81_A 297 QVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYP 376 (418)
T ss_dssp TEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCH
T ss_pred CCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCCh
Confidence 2 2 3566777420 145788999999999 998 76543221100 0
Q ss_pred ------eeEEEEeecCCC-CHHHHHHHHHHHHHHHHH
Q 010897 414 ------VAVLRVVVREDF-SRSLVERLISHIEEVLKE 443 (498)
Q Consensus 414 ------~~~lRv~v~~~~-t~~~~~~l~~~l~~~l~~ 443 (498)
...+|++++..+ |.++++++++.|+++++.
T Consensus 377 ~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 377 VSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 258999999999 999999999999988764
No 97
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.94 E-value=4.7e-25 Score=227.16 Aligned_cols=337 Identities=11% Similarity=0.019 Sum_probs=235.3
Q ss_pred CChHHHHHHHHHHhcc---CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~---n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~ 143 (498)
++++.+.+++.+.++. ....|....+..++++++.+++.+.+|.+.+.+ ..+++|+|+++|+.+++.++.++
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~--~~v~~~~g~~~a~~~~~~~~~~~--- 124 (429)
T 1yiz_A 50 HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPM--TEVLVTVGAYEALYATIQGHVDE--- 124 (429)
T ss_dssp CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTT--TSEEEESHHHHHHHHHHHHHCCT---
T ss_pred CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCc--CCEEEecChHHHHHHHHHHhcCC---
Confidence 3567888999888875 223344444678899999999988888653221 03899999999999998887432
Q ss_pred HHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCC---------ccccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~---------~~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
+++|+++.++|..+...++..|++++.+|++++ +|.+|+++|++++++++++|++++++||
T Consensus 125 ----------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~np 194 (429)
T 1yiz_A 125 ----------GDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNP 194 (429)
T ss_dssp ----------TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred ----------CCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCC
Confidence 468999999999999999999999999999764 4789999999999888999999999999
Q ss_pred cccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCC-cc-cc-CCCCeeEEEEcCCccCC-CCCCeEE
Q 010897 215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW-DF-RLPLVKSINVSGHKYGL-VYAGVGW 287 (498)
Q Consensus 215 tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~~-~~-~~~~~dsi~~s~hK~l~-~p~g~g~ 287 (498)
||.+.| +++|.++|+++ |+++++|++|+++.. ..... .. .+ .....|.+..+.||+++ ++.++|+
T Consensus 195 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~ 266 (429)
T 1yiz_A 195 LGKVMDRAELEVVANLCKKW------NVLCVSDEVYEHMVF--EPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGW 266 (429)
T ss_dssp TCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEE
T ss_pred CCccCCHHHHHHHHHHHHHc------CcEEEEecccccccc--CCCCCcChhhccCCcCceEEEecchhccCCCCcceEE
Confidence 999975 89999999999 999999999998652 11111 11 11 12357889999999875 4455899
Q ss_pred EEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh----c--HHHHHHHHHHHHHHHHHHHHHHhcC
Q 010897 288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL----G--FEGYKNIMENCMGNARALREGLEKT 361 (498)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l----g--~~g~~~~~~~~~~~a~~l~~~L~~~ 361 (498)
++.++ +.+ +.+.....+. . ++.+.....+..++|... + .+.+++..++..++++++.+.|+++
T Consensus 267 ~~~~~-~~~-~~l~~~~~~~-----~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 267 AYGPE-ALL-KNLQMVHQNC-----V----YTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp EESCH-HHH-HHHHHHHHTT-----T----CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCH-HHH-HHHHHHHhhc-----c----cCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98643 221 2111100000 1 222223333344445441 2 3446777888888999999999988
Q ss_pred CCeEEeeCCCCccEEEEEecCCC----------CCCHHHHHHHHH-hcCcEeeeec-CCCCC---CCeeEEEEeecCCCC
Q 010897 362 GRFEILSKDVGVPLVAFSLKDSS----------AHTVFEISEGLR-KFGWIVPAYT-MPANA---ENVAVLRVVVREDFS 426 (498)
Q Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~----------~~~~~~l~~~L~-~~G~~v~~~~-~~~~~---~~~~~lRv~v~~~~t 426 (498)
+ +++..+. ...++.+++++.. ..+..+++++|. ++|+.+.... +.... .+..++|+++. .+
T Consensus 336 g-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~ 411 (429)
T 1yiz_A 336 G-MNPTVPQ-GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KK 411 (429)
T ss_dssp T-CEEEECS-BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SC
T ss_pred C-CcccCCC-cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CC
Confidence 4 8776543 4557778875320 135678899886 7898875432 11110 12468999986 37
Q ss_pred HHHHHHHHHHHHHHH
Q 010897 427 RSLVERLISHIEEVL 441 (498)
Q Consensus 427 ~~~~~~l~~~l~~~l 441 (498)
.++++++++.|++++
T Consensus 412 ~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 412 DENLQKAAEILRKWK 426 (429)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888877664
No 98
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.94 E-value=6e-26 Score=230.99 Aligned_cols=329 Identities=11% Similarity=0.059 Sum_probs=222.8
Q ss_pred HHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHhc
Q 010897 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ 148 (498)
Q Consensus 70 ~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~~~~~~ 148 (498)
+.+.+++.+.+..+.+. ...+... ++++.+++++|.+. +++++||++|+.+++.++ ..
T Consensus 36 ~~~~~a~~~~~~~~~~~-~~~~~~~----~l~~~la~~~~~~~-------~i~~~~gt~al~~~l~~~~~~--------- 94 (391)
T 3dr4_A 36 GNERDYVLECMDTTWIS-SVGRFIV----EFEKAFADYCGVKH-------AIACNNGTTALHLALVAMGIG--------- 94 (391)
T ss_dssp SSHHHHHHHHHHHTCCS-SCSHHHH----HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHHHHHHcCCcc-CCChHHH----HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC---------
Confidence 55667777776654432 1334444 44555888888763 899999999999988877 22
Q ss_pred CCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHH
Q 010897 149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 228 (498)
Q Consensus 149 g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la 228 (498)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|+||.+.|+++|.++|
T Consensus 95 ----~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~ 167 (391)
T 3dr4_A 95 ----PGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVA 167 (391)
T ss_dssp ----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred ----CcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHH
Confidence 1468999999999999999999999999999865689999999999998888775 578999999999999999
Q ss_pred HHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccC
Q 010897 229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLG 308 (498)
Q Consensus 229 ~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~ 308 (498)
+++ |+++++|+||+.+.. ..+.... ....++++++++||++.+ ...|+++.+++... +.+.....+-.
T Consensus 168 ~~~------~~~li~D~a~~~g~~--~~~~~~~--~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~-~~~~~~~~~g~ 235 (391)
T 3dr4_A 168 RRH------NLLVIEDAAEAVGAT--YRGKKSG--SLGDCATFSFFGNAIITT-GEGGMITTNDDDLA-AKMRLLRGQGM 235 (391)
T ss_dssp HHT------TCEEEEECTTCTTCE--ETTEETT--SSSSEEEEECBTTSSSCC-BSCEEEEESCHHHH-HHHHHHHBTTC
T ss_pred HHc------CCEEEEECcccccce--ECCeeec--ccCCEEEEECCCCCcCCc-CCeEEEEECCHHHH-HHHHHHHhcCC
Confidence 999 999999999986542 1111000 122477777789999966 44677766543221 11110000000
Q ss_pred C--CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeC--CC----CccEEEEEe
Q 010897 309 S--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK--DV----GVPLVAFSL 380 (498)
Q Consensus 309 ~--~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~----~~~~v~f~~ 380 (498)
. ....+...+... .+..+.+++.....+++.++.++..++++++.+.|+++ ++++... +. ...++.+.+
T Consensus 236 ~~~~~~~~~~~g~~~--~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~ 312 (391)
T 3dr4_A 236 DPNRRYWFPIVGFNY--RMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRL 312 (391)
T ss_dssp CTTSTTCCSSCCCBC--BCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEE
T ss_pred CCCCccccccccccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEE
Confidence 0 000000001111 11222333333334667788899999999999999998 5776654 21 223456676
Q ss_pred cCCCCCCHHHHHHHHHhcCcEeeeecCCCCC-----------------CCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 381 KDSSAHTVFEISEGLRKFGWIVPAYTMPANA-----------------ENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~-----------------~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
++..+.+..++.++|.++|+.++.+..|... .....+|++++..+|.++++++++.|++++
T Consensus 313 ~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 313 GEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 5433567889999999999988654321100 124689999999999999999998887653
No 99
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.94 E-value=5.4e-25 Score=222.42 Aligned_cols=344 Identities=11% Similarity=0.008 Sum_probs=236.8
Q ss_pred cCCCCCcccccccC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHH
Q 010897 53 DGNPRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (498)
Q Consensus 53 ~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~ 131 (498)
+|+..+++.+..+. +++|.+.+++.+.+......|.. .+ .++++.+.+++.+.+|.+.+. ..+++|+|+++|+.
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~---~~i~~t~g~~~a~~ 95 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP---EWIFPIPDVVRGLY 95 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHH
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH---HHEEEeCChHHHHH
Confidence 45555555555443 45688999998888764444444 34 778888888888888876432 34899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeec
Q 010897 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG 211 (498)
Q Consensus 132 la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~ 211 (498)
+++.++.++ +++|+++.++|..+...++..|++++.+|++++ +|+++|++++++++++|+++++
T Consensus 96 ~~~~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~d~~~l~~~l~~~~~~v~i~~p 159 (377)
T 3fdb_A 96 IAIDHFTPA-------------QSKVIVPTPAYPPFFHLLSATQREGIFIDATGG---INLHDVEKGFQAGARSILLCNP 159 (377)
T ss_dssp HHHHHHSCT-------------TCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS---CCHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhcCC-------------CCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC---CCHHHHHHHhccCCCEEEEeCC
Confidence 988876432 468999999999999999999999999999874 9999999999999999999999
Q ss_pred cCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CC--CCeeEEEEcCCccC-CCCCC
Q 010897 212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL--PLVKSINVSGHKYG-LVYAG 284 (498)
Q Consensus 212 ~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~--~~~dsi~~s~hK~l-~~p~g 284 (498)
+||||.+.| +++|.++|+++ |+++++|++|+++.. ........+ .+ ...+.+..+.+|++ .++.+
T Consensus 160 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 231 (377)
T 3fdb_A 160 YNPLGMVFAPEWLNELCDLAHRY------DARVLVDEIHAPLVF--DGQHTVAAGVSDTAASVCITITAPSKAWNIAGLK 231 (377)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBS--SSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccchhhc--CCCCCcccHHHccCCCcEEEEEeChHhccCcchh
Confidence 999999965 66677779999 999999999998652 110111111 11 23457788999988 46678
Q ss_pred eEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Q 010897 285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGR 363 (498)
Q Consensus 285 ~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~ 363 (498)
+|++++.+++.. +.+..... ...++.+.....+..+++.. +.+.++++.++..++++++.+.|++ +++
T Consensus 232 ~G~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 300 (377)
T 3fdb_A 232 CAQIIFSNPSDA-EHWQQLSP---------VIKDGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPG 300 (377)
T ss_dssp CEEEECCSHHHH-HHHHHSCH---------HHHCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred heEEEeCCHHHH-HHHHHHHH---------hhcCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 898876543321 11110000 00122222333333333432 3455778888899999999999998 777
Q ss_pred eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 364 FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
+++..+. ...++.+.++.. +.+ .++.+.|.++ |+.+....... ..+..++|++++. +.++++++++.|+++++
T Consensus 301 ~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~l~~~~gi~v~~g~~~~-~~~~~~~Ris~~~--~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 301 AKITPMQ-ATYLMWIDFRDT-TIE-GSPSEFFIEKAKVAMNDGAWFG-EDGTGFCRLNFAT--SREVLEEAIDRMAKAVS 374 (377)
T ss_dssp CEECCCS-BCSEEEEECTTS-CCC-SCHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred ceEecCC-eeEEEEEECccc-CCC-HHHHHHHHHhCCEEecCChhcc-CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHh
Confidence 8887543 333334666532 223 4677777665 98875432111 1235689999873 78888888888877764
No 100
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.94 E-value=8.4e-25 Score=220.29 Aligned_cols=319 Identities=12% Similarity=0.077 Sum_probs=220.3
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+.+.... .|.. ++.. ++++.+++++|.+. ..+++|+|+++++.+++.++ +
T Consensus 37 ~~~~~v~~a~~~~~~~~~-~y~~-~~~~----~l~~~la~~~~~~~-----~~v~~~~g~~~al~~~~~~~--~------ 97 (364)
T 1lc5_A 37 GMPVSVKRALIDNLDCIE-RYPD-ADYF----HLHQALARHHQVPA-----SWILAGNGETESIFTVASGL--K------ 97 (364)
T ss_dssp CCCHHHHHHHHHTGGGGG-SCCC-TTCH----HHHHHHHHHHTSCG-----GGEEEESSHHHHHHHHHHHH--C------
T ss_pred CCCHHHHHHHHHHHHHhh-cCCC-CCHH----HHHHHHHHHHCcCH-----HHEEECCCHHHHHHHHHHHc--C------
Confidence 356788888888876422 2221 2333 44555777788764 24899999999999888876 2
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---HH
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VK 222 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l~ 222 (498)
+++|+++.++|..+...++..|++++.+|+++ +++.+ ++++.+.+++++++|++++|+||||.+.| ++
T Consensus 98 -------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~ 169 (364)
T 1lc5_A 98 -------PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQ 169 (364)
T ss_dssp -------CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHH
T ss_pred -------CCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 36899999999999999999999999999874 23433 46666667677899999999999999988 89
Q ss_pred HHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccc
Q 010897 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELV 301 (498)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~ 301 (498)
+|.++|+++ |+++++|++|+++... .......+.....+.+..+.||+++ ++.++|++++.+++.. +.+.
T Consensus 170 ~i~~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~-~~l~ 240 (364)
T 1lc5_A 170 AIADRCKSL------NINLILDEAFIDFIPH--ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAM-ARMR 240 (364)
T ss_dssp HHHHHHHHH------TCEEEEECTTGGGSTT--CCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHH-HHHH
T ss_pred HHHHHhhhc------CcEEEEECcChhhccC--ccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHH-HHHH
Confidence 999999999 9999999999987521 1111101122346788889999986 5567899883333221 1111
Q ss_pred cccCccCCCCCCccccCCCchHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEe
Q 010897 302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSL 380 (498)
Q Consensus 302 ~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (498)
... .. ++. ..+.++++...+.. +.+++..++..++++++.+.|++++++++..+ ..+++.+.+
T Consensus 241 ~~~-------~~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~g~~~~~~~ 304 (364)
T 1lc5_A 241 RQQ-------MP----WSV---NALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPG--RANYLLLRC 304 (364)
T ss_dssp HHS-------CT----TCS---CHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC--SSSEEEEEE
T ss_pred HhC-------CC----CCC---CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC--CCeEEEEEC
Confidence 100 01 112 23345555555543 45677778888899999999999877887632 567888887
Q ss_pred cCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 381 KDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
+. +..++.+.|.++|+.+....... ..+..++|+++. +.++++++++.|+++++.+.
T Consensus 305 ~~----~~~~l~~~l~~~gi~v~~g~~~~-~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 305 ER----EDIDLQRRLLTQRILIRSCANYP-GLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp SC----TTCCHHHHHHTTTEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred CC----cHHHHHHHHHHCCcEEeeCcccC-CCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 53 23478899999998875432211 123468999986 67889999999998876653
No 101
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.94 E-value=3e-25 Score=226.31 Aligned_cols=328 Identities=13% Similarity=0.023 Sum_probs=225.4
Q ss_pred ChHHHHHHHHHHhccCC---CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNY---VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~---~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+++.+.+++.+.+.... ..|...++..++++. +++++|.+. ..+++|+|+++++.+++.++.++
T Consensus 48 ~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~----la~~~g~~~-----~~v~~~~g~~~al~~~~~~~~~~---- 114 (397)
T 2zyj_A 48 PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAF----VAEWIGVRP-----EEVLITTGSQQALDLVGKVFLDE---- 114 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHH----HHHHHTSCG-----GGEEEESHHHHHHHHHHHHHCCT----
T ss_pred CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHH----HHHHhCCCh-----hhEEEeccHHHHHHHHHHHhCCC----
Confidence 56778888887776421 233333345555555 666667543 24899999999999888877432
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-CCeEE-EEeeccCCcccccCHH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICV-AAILGSTLTGEFEDVK 222 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v-~~~~~~t~tG~~~~l~ 222 (498)
+++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++ ++++| ++++++||||.+.|.+
T Consensus 115 ---------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~ 183 (397)
T 2zyj_A 115 ---------GSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE-G-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLP 183 (397)
T ss_dssp ---------TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHH
T ss_pred ---------CCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC-C-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHH
Confidence 468999999999999999999999999999865 3 999999999987 78887 4689999999997755
Q ss_pred ---HHHHHHHHhhcccCCCceEEEecCcccccccccCCCC-c-cccCCC---CeeEEEEcCCccCCCCCCeEEEEEeCCC
Q 010897 223 ---LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFRLP---LVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (498)
Q Consensus 223 ---~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~-~~~~~~---~~dsi~~s~hK~l~~p~g~g~~~~~~~~ 294 (498)
+|.++|+++ |+++++|++|+++.. ..... . ..+... ..+.+..+.||+++++.++|+++.+. +
T Consensus 184 ~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~-~ 254 (397)
T 2zyj_A 184 ARKRLLQMVMER------GLVVVEDDAYRELYF--GEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP-E 254 (397)
T ss_dssp HHHHHHHHHHHH------TCCEEEECTTTTCBC--SSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCH-H
T ss_pred HHHHHHHHHHHc------CCEEEEeCCcccccC--CCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCH-H
Confidence 899999999 999999999998752 11110 0 011111 23467789999998557789998652 2
Q ss_pred CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHHHHHHHHhc-CC-CeEEeeC
Q 010897 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF---EGYKNIMENCMGNARALREGLEK-TG-RFEILSK 369 (498)
Q Consensus 295 ~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~---~g~~~~~~~~~~~a~~l~~~L~~-~~-~~~~~~~ 369 (498)
.. +.+...... ++ ++-+ .+.+.++...+.. +.+++..++..++++++.+.|++ ++ ++++..+
T Consensus 255 ~~-~~l~~~~~~-------~~--~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~ 321 (397)
T 2zyj_A 255 AL-QKLVQAKQG-------AD--LHTP---MLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRP 321 (397)
T ss_dssp HH-HHHHHHHHH-------HH--SSCC---HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCC
T ss_pred HH-HHHHHHHHh-------hc--CCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccC
Confidence 11 111100000 01 1111 2233333333322 34667777788899999999987 56 4887644
Q ss_pred CCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeec-CCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 370 DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYT-MPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 370 ~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~-~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
. ..+++.++++. +.+..++.++|.++|+.+.... +.....+..++|++++.. +.++++++++.|+++++++.
T Consensus 322 ~-~g~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 322 K-GGMFVWMELPK--GLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp S-BSSEEEEECST--TCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccEEEEEEcCC--CCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 3 45677788753 4678899999999999875432 111112356899999764 88999999999999887653
No 102
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.94 E-value=2.9e-25 Score=227.05 Aligned_cols=342 Identities=11% Similarity=-0.031 Sum_probs=233.0
Q ss_pred CcccccccC-CChHHHHHHHHHHhccC-CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHH
Q 010897 58 LNLASFVTT-WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (498)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~l~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~ 135 (498)
+++.+..+. +++|.+.+++.+.+... ...|...++..++++.+.+++.+.+|.+.+.. ..+++|+|+++|+.+++.
T Consensus 50 idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~~v~~t~G~~~al~~~~~ 127 (404)
T 2o1b_A 50 INMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKE--DEVCILYGTKNGLVAVPT 127 (404)
T ss_dssp EECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTT--TSEEEESSHHHHHHHHHH
T ss_pred EecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCc--ccEEEcCCcHHHHHHHHH
Confidence 444444433 34678888888887542 22233335678888898888888889863210 138999999999999888
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCc
Q 010897 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT 215 (498)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~t 215 (498)
++.++ +++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|++++++|||
T Consensus 128 ~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt 194 (404)
T 2o1b_A 128 CVINP-------------GDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPT 194 (404)
T ss_dssp HHCCT-------------TCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTT
T ss_pred HhcCC-------------CCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCC
Confidence 87432 46899999999999999999999999999986557799999999998889999999999999
Q ss_pred ccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCC---CCeeEEEEcCCccCC-CCCCeEEE
Q 010897 216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL---PLVKSINVSGHKYGL-VYAGVGWV 288 (498)
Q Consensus 216 G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~---~~~dsi~~s~hK~l~-~p~g~g~~ 288 (498)
|.+.| +++|.++|+++ |+++++|++|+++.. .. .....+.. ...+.+..+.+|+++ ++.++|++
T Consensus 195 G~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 265 (404)
T 2o1b_A 195 GSTATKEVFDEAIAKFKGT------DTKIVHDFAYGAFGF--DA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFA 265 (404)
T ss_dssp CCCCCHHHHHHHHHHHTTS------SCEEEEECTTTTCBS--SS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEE
T ss_pred CccCCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeE
Confidence 99975 77899999999 999999999998752 11 11001112 235788889999985 55678998
Q ss_pred EEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEee
Q 010897 289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILS 368 (498)
Q Consensus 289 ~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 368 (498)
+.+. +.+ +.+.....+. .++.+.....+...+|.. +.+.+++..++..++++++.+.|++++ +++..
T Consensus 266 ~~~~-~~~-~~l~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 332 (404)
T 2o1b_A 266 VGNK-DMI-QALKKYQTHT---------NAGMFGALQDAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVH 332 (404)
T ss_dssp EECH-HHH-HHHHHHHHHH---------CCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEC
T ss_pred ecCH-HHH-HHHHHHHhhc---------cCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhcC-CeecC
Confidence 7642 221 1111100000 012222222223333332 245567778888889999999999884 77764
Q ss_pred CCCCccEEEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 369 KDVGVPLVAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 369 ~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
+. ...++.++++. +.+..++.++|. ++|+.+....... ..+..++|+++.. +.++++++++.|+++++
T Consensus 333 ~~-~g~~~~~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 333 AK-GGIYVWLETPP--GYDSEQFEQFLVQEKSILVAPGKPFG-ENGNRYVRISLAL--DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp CC-BSSEEEEECCT--TCCHHHHHHHHHHHHCEECEESGGGC-GGGTTEEEEECCS--CTTHHHHHHHHHHGGGG
T ss_pred CC-cceEEEEeCCC--CCCHHHHHHHHHHHCCEEEeCchhhC-cCCCCeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence 32 23346667742 457788999987 5798875432111 1234679999974 66777777766665543
No 103
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.94 E-value=7e-25 Score=230.41 Aligned_cols=334 Identities=11% Similarity=-0.008 Sum_probs=224.8
Q ss_pred HHHHHHHHHHhcc----CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHH-HHHHHH
Q 010897 70 PECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKWQQK 144 (498)
Q Consensus 70 ~~~~~~l~~~~~~----n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~-~~~~~~ 144 (498)
+.+.+.+.+.+.. ....|...++..++++++.+++.+..|.+.+. ..+++|+|+++++.+++.++. .+
T Consensus 109 ~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~l~~~~---- 181 (500)
T 3tcm_A 109 ADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANA---DDIFLTDGASPGVHLMMQLLIRNE---- 181 (500)
T ss_dssp HHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG---GGEEEESSSHHHHHHHHHHHCCST----
T ss_pred HHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCc---ccEEEcCCHHHHHHHHHHHHcCCC----
Confidence 3344444555554 23345566678899999999999888876532 348999999999999888874 22
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCC-ccccCHHHHHHHhhh------CCeEEEEeeccCCccc
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE------NTICVAAILGSTLTGE 217 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~L~~~i~~------~t~~v~~~~~~t~tG~ 217 (498)
++.|+++.++|..+..+++..|++++.++++++ +|.+|+++|++++++ ++++|++++|+||||.
T Consensus 182 ---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~ 252 (500)
T 3tcm_A 182 ---------KDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ 252 (500)
T ss_dssp ---------TEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC
T ss_pred ---------CCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcc
Confidence 479999999999999999999999999999853 578999999999987 7889999999999999
Q ss_pred ccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcc-------ccC--CCCee-EEEEcCCccC--CCC
Q 010897 218 FED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-------DFR--LPLVK-SINVSGHKYG--LVY 282 (498)
Q Consensus 218 ~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~-------~~~--~~~~d-si~~s~hK~l--~~p 282 (498)
+.+ +++|.++|+++ ++++++|++|+.++. ....... +++ ...+. ++..|.+|.+ .++
T Consensus 253 ~~s~~~l~~i~~la~~~------~~~li~Deay~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 324 (500)
T 3tcm_A 253 VLAEENQYDIVKFCKNE------GLVLLADEVYQENIY--VDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG 324 (500)
T ss_dssp CCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--CTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG
T ss_pred cCCHHHHHHHHHHHHHc------CCEEEEecCcccccc--CCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc
Confidence 954 66777779999 999999999998652 1110101 111 12233 3445889976 356
Q ss_pred CCeEEEEEe--CCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc------------HHHHHHHHHHHH
Q 010897 283 AGVGWVVWR--TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG------------FEGYKNIMENCM 348 (498)
Q Consensus 283 ~g~g~~~~~--~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg------------~~g~~~~~~~~~ 348 (498)
.++||++.. +++.. +.+..... ...+. ....|.++...+. .+...++.+++.
T Consensus 325 ~R~G~~~~~~~~~~~~-~~l~~~~~----------~~~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 390 (500)
T 3tcm_A 325 KRGGYFEITGFSAPVR-EQIYKIAS----------VNLCS---NITGQILASLVMNPPKASDESYASYKAEKDGILASLA 390 (500)
T ss_dssp GCCEEEEEESCCTTHH-HHHHHHHH----------TTCCC---CHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCHHHH-HHHHHHHh----------cccCC---CHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHH
Confidence 778999874 33221 21111000 00111 1222332222221 123456667778
Q ss_pred HHHHHHHHHHhcCCCeEEeeCCCCccEEEE-EecCCC---------CCC-HHH-HHHHHHhcCcEeeeecCCCCCCCeeE
Q 010897 349 GNARALREGLEKTGRFEILSKDVGVPLVAF-SLKDSS---------AHT-VFE-ISEGLRKFGWIVPAYTMPANAENVAV 416 (498)
Q Consensus 349 ~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f-~~~~~~---------~~~-~~~-l~~~L~~~G~~v~~~~~~~~~~~~~~ 416 (498)
++++++.+.|++++++++..+ ..++++| ++..+. +.. ... +.+.|.++|+.+..........+..+
T Consensus 391 ~~~~~l~~~L~~~~g~~~~~~--~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~ 468 (500)
T 3tcm_A 391 RRAKALEHAFNKLEGITCNEA--EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWH 468 (500)
T ss_dssp HHHHHHHHHHHTSTTEECCCC--CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCB
T ss_pred HHHHHHHHHHhcCCCcEEecC--CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCE
Confidence 899999999999978887644 3455444 342111 111 122 33566778998765433322345667
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 417 LRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 417 lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
+|+++. .+.++++++++.|+++++.+.
T Consensus 469 iRis~~--~~~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 469 FRCTIL--PQEDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp EEEESC--SCTTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEC--CCHHHHHHHHHHHHHHHHHHH
Confidence 999997 688899999999999887654
No 104
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4e-25 Score=229.16 Aligned_cols=348 Identities=12% Similarity=0.082 Sum_probs=236.2
Q ss_pred CCCCCcccccccCC-ChHHHHHHHHHHhcc-CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHH
Q 010897 54 GNPRLNLASFVTTW-MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (498)
Q Consensus 54 ~~p~~~~~~~~~~~-~~~~~~~~l~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~ 131 (498)
+++.+++..+.+.. +++.+.+++.++++. ....|....+..++++++.+++.+.+|.+.+. ..+++|+|+++|+.
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~---~~v~~t~G~~~al~ 132 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA---ENVTVTTGANEGIL 132 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG---GGEEEESHHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEeCCHHHHHH
Confidence 34445666655443 457888999888875 22334444567889999888888888875432 24899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCC-----------ccccCHHHHHHHhh
Q 010897 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-----------YYVMNPVKAVELVD 200 (498)
Q Consensus 132 la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~-----------~~~~d~~~L~~~i~ 200 (498)
+++.++.++ +++|++++++|..+...++..|++++.+|++++ ++.+|+++|+++++
T Consensus 133 ~~~~~l~~~-------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 199 (447)
T 3b46_A 133 SCLMGLLNA-------------GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT 199 (447)
T ss_dssp HHHHHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred HHHHHHcCC-------------CCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence 998887432 468999999999999999999999999999754 47899999999998
Q ss_pred hCCeEEEEeeccCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc-ccc--CCCCeeEEEEc
Q 010897 201 ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF--RLPLVKSINVS 274 (498)
Q Consensus 201 ~~t~~v~~~~~~t~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~-~~~--~~~~~dsi~~s 274 (498)
+++++|++++++||||.+ +++++|.++|+++ |+++++|++|+++.. ..+... ..+ +....+.+..+
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~i~S 271 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKH------NVVIISDEVYEHLYF--TDSFTRIATLSPEIGQLTLTVGS 271 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--SSCCCCGGGSCHHHHTTEEEEEE
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CcEEEEeccchhccc--CCCCcCHHHcCCCCCCcEEEEec
Confidence 889999999999999998 4689999999999 999999999998652 111000 011 11246888899
Q ss_pred CCccCC-CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHH
Q 010897 275 GHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNAR 352 (498)
Q Consensus 275 ~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-~~g~~~~~~~~~~~a~ 352 (498)
.+|++. ++.++||++.++++.+ +.+.....+ ..++.+.....+..++|.... .+.+++..++..++++
T Consensus 272 ~sK~~~~~G~riG~~~~~~~~l~-~~l~~~~~~---------~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~ 341 (447)
T 3b46_A 272 AGKSFAATGWRIGWVLSLNAELL-SYAAKAHTR---------ICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFK 341 (447)
T ss_dssp HHHHTTCTTSCCEEEECSCHHHH-HHHHHHHHH---------HTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CchhcCCcchhhEEEEeCCHHHH-HHHHHHHhh---------ccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Confidence 999885 5667999986333221 111100000 012222223333334444322 2346677888888999
Q ss_pred HHHHHHhcCCCeEEeeCCCCccEEEEEecCCC-------------CCCHHHHHHHHH-hcCcEeeeec-CCCC---CCCe
Q 010897 353 ALREGLEKTGRFEILSKDVGVPLVAFSLKDSS-------------AHTVFEISEGLR-KFGWIVPAYT-MPAN---AENV 414 (498)
Q Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~-------------~~~~~~l~~~L~-~~G~~v~~~~-~~~~---~~~~ 414 (498)
++.+.|++++ +++..+. ...++.++++... ..+..+++++|. ++|+.+.... +... ..+.
T Consensus 342 ~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~ 419 (447)
T 3b46_A 342 IFTSIFDELG-LPYTAPE-GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAE 419 (447)
T ss_dssp HHHHHHHHHT-CCEECCS-BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGT
T ss_pred HHHHHHHHCC-CeecCCC-eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCC
Confidence 9999999885 7766432 4556677775310 135668998886 5798774322 1111 0124
Q ss_pred eEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 415 AVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 415 ~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
.++|+++.. +.+++++.++.|++
T Consensus 420 ~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 420 NLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp TEEEEECCS--CHHHHHHHHHHGGG
T ss_pred CEEEEEEeC--CHHHHHHHHHHHHH
Confidence 689999863 66666655555443
No 105
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.93 E-value=5.8e-25 Score=224.33 Aligned_cols=328 Identities=13% Similarity=0.034 Sum_probs=226.5
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceee-ecChhHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~g~sea~~la~~a~~~~~~~ 143 (498)
+.++++.+.+++.+..+........++...++.+++++++++++|++.+ ..+++ |+|+++|+.+++.++.++
T Consensus 48 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~i~~~t~g~t~al~~~~~~l~~~--- 120 (398)
T 2fyf_A 48 PSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDG----YEVILGNGGATAFWDAAAFGLIDK--- 120 (398)
T ss_dssp SCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----CEEEEEETCHHHHHHHHHHHTCSS---
T ss_pred CCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEeCCchhHHHHHHHHHhcCC---
Confidence 4456677877776532111111123566667778899999999999732 13777 999999999998887321
Q ss_pred HHHhcCCCCCCcEEEEcCCchhH-HHHHHHHc--CCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccC
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVC-WEKFARYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED 220 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~-~~~~~~~~--g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~ 220 (498)
..++++...|.. +...+... |++++.|++++ ++..+. .++++|++|++++++|+||.+.|
T Consensus 121 -----------gv~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~ 183 (398)
T 2fyf_A 121 -----------RSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP-GSAPEP-----QTDPSVDVIAWAHNETSTGVAVA 183 (398)
T ss_dssp -----------CEEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT-TCCCCC-----CCCTTCSEEEEESEETTTTEECC
T ss_pred -----------CeEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC-CCCCCc-----cccCCCCEEEEeCcCCCcceecc
Confidence 124455555642 23345666 88899999874 244443 25678999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~ 300 (498)
+++|.++ + |+++|+|+||+.+..++ ++ ..+|+++.++||+++++.|+|+++.+++ .+ +.+
T Consensus 184 ~~~i~~~---~------~~~vivD~a~~~~~~~~-------~~--~~~di~~~s~sK~~~~~gg~g~l~~~~~-~~-~~l 243 (398)
T 2fyf_A 184 VRRPEGS---D------DALVVIDATSGAGGLPV-------DI--AETDAYYFAPQKNFASDGGLWLAIMSPA-AL-SRI 243 (398)
T ss_dssp CCCCTTC---C-------CEEEEECTTTTTTSCC-------CG--GGCSEEEECTTSTTCSCSSEEEEEECHH-HH-HHH
T ss_pred hHHhhhh---c------CCeEEEEeccccCCccc-------Cc--ccCcEEEEecCcccCCCCceEEEEECHH-HH-HHh
Confidence 9999887 7 99999999998765322 11 1378999999999988778999887642 21 111
Q ss_pred cc-------ccCccCCCC------CCccccCCCchHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 010897 301 VF-------HINYLGSDQ------PTFTLNFSKGSSQIIAQYYQFIRLGFEG-YKNIMENCMGNARALREGLEKTGRFEI 366 (498)
Q Consensus 301 ~~-------~~~yl~~~~------~~~~l~~sr~~~~~~a~~~~l~~lg~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~ 366 (498)
.. ...|+.... .... .++.+...+.++.++++.+..+| ++++.++..++++++.+.|++++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 322 (398)
T 2fyf_A 244 EAIAATGRWVPDFLSLPIAVENSLKNQT-YNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTP 322 (398)
T ss_dssp HHHHHTTCCCCGGGCHHHHHHHHTTTCC-SSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred hcccccCCCCCcEEehHHHhhhcccCCC-CCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCcee
Confidence 00 012221100 0011 13444445566777777766666 889999999999999999999977988
Q ss_pred ee-CC-CCcc-EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 367 LS-KD-VGVP-LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 367 ~~-~~-~~~~-~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
+. .+ ...+ +++|++++ +.+..++.++|.++|+.+... . ...+..++|++++..++.++++++++.|+++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gI~v~~g-~--~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 323 FVTDPGLRSQVVGTIDFVD--DVDAGTVAKILRANGIVDTEP-Y--RKLGRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp SCCSGGGBCSSEEEEEECT--TSCHHHHHHHHHHTTCBCCSC-C--TTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCChhhcCCcEEEEECCC--CCCHHHHHHHHHHCCcEEecC-c--ccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 74 12 1355 88888853 467889999999999887532 1 112346899999988899999999999998865
No 106
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.93 E-value=2e-24 Score=222.27 Aligned_cols=342 Identities=13% Similarity=0.080 Sum_probs=227.3
Q ss_pred ChHHHHHHHHHHhccCCCCCcC-CcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNYVDMDE-YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
+++.+.+++.++++.+. |.. .+... ++++.+++++|.+. +++|+|+++|+.+++.++. .
T Consensus 30 ~p~~~~~a~~~~~~~~~--y~~~~~~~~----~l~~~la~~~~~~~-------v~~~~ggt~al~~~l~~l~-~------ 89 (424)
T 2po3_A 30 DRARLYERLDRALDSQW--LSNGGPLVR----EFEERVAGLAGVRH-------AVATCNATAGLQLLAHAAG-L------ 89 (424)
T ss_dssp CHHHHHHHHHHHHHHTC--CSSSCHHHH----HHHHHHHHHHTSSE-------EEEESCHHHHHHHHHHHHT-C------
T ss_pred ChHHHHHHHHHHHhcCC--cccCCHHHH----HHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcC-C------
Confidence 34678888888776543 222 34444 45555788888752 8999999999999988863 1
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHH
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 226 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~ 226 (498)
+++|++++++|.++..+++..|++++.++++++++.+|+++|++++++++++|+++ +++|...++++|.+
T Consensus 90 -------gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~~l~~i~~ 159 (424)
T 2po3_A 90 -------TGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPCAADQLRK 159 (424)
T ss_dssp -------CSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCCCHHHHHH
T ss_pred -------CCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcCCHHHHHH
Confidence 36899999999999999999999999999986558899999999998888888775 37999999999999
Q ss_pred HHHHhhcccCCCceEEEecCcc-cccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccC
Q 010897 227 LLTKKNEETGWDTPIHVDAASG-GFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305 (498)
Q Consensus 227 la~~~~~~~~~~~~l~vD~A~~-g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~ 305 (498)
+|+++ |+++++|++|+ ++. +..... . ....+.+.+++.+|++.+ .++|+++.++++.. +.+.....
T Consensus 160 la~~~------~~~li~Dea~~~g~~--~~~~~~--~-~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~-~~l~~~~~ 226 (424)
T 2po3_A 160 VADEH------GLRLYFDAAHALGCA--VDGRPA--G-SLGDAEVFSFHATKAVNA-FEGGAVVTDDADLA-ARIRALHN 226 (424)
T ss_dssp HHHHT------TCEEEEECTTCTTCE--ETTEET--T-SSSSEEEEECCTTSSSCC-SSCEEEEESCHHHH-HHHHHHHB
T ss_pred HHHHc------CCEEEEECccccCCe--ECCeec--c-cccCEEEEeCCCCCCccC-CCCeEEEeCCHHHH-HHHHHHHh
Confidence 99999 99999999998 443 211100 0 112233344444597755 67888886643322 11111001
Q ss_pred ccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCC----ccEEEEEec
Q 010897 306 YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG----VPLVAFSLK 381 (498)
Q Consensus 306 yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~----~~~v~f~~~ 381 (498)
+...........+.......++..+++. ..+++++..++..++++++.+.|++++++++..++.+ ..++.+.++
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~ 304 (424)
T 2po3_A 227 FGFDLPGGSPAGGTNAKMSEAAAAMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEID 304 (424)
T ss_dssp TTTTCTTCCTTCCCBCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEEC
T ss_pred cCccccccccccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEEC
Confidence 1000000000001110011222223332 2345677888888899999999999877988753211 245556664
Q ss_pred CC-CCCCHHHHHHHHHhcCcEeeeecCCCCC-------C------C-----eeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 382 DS-SAHTVFEISEGLRKFGWIVPAYTMPANA-------E------N-----VAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 382 ~~-~~~~~~~l~~~L~~~G~~v~~~~~~~~~-------~------~-----~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
+. .+.+..++.+.|.++|+.+...+.++.. . + ...+|+++...++.++++++++.|+++++
T Consensus 305 ~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 305 EATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp HHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 20 0356789999999999988653321100 0 0 12378877788899999999999999999
Q ss_pred HHHcCccccccc
Q 010897 443 EIESLPSRVSTK 454 (498)
Q Consensus 443 ~l~~~~~~~~~~ 454 (498)
...+...++.+.
T Consensus 385 ~~~~~~~~~~~~ 396 (424)
T 2po3_A 385 RGRELTARHRDT 396 (424)
T ss_dssp HHHHHHHHHHC-
T ss_pred hhHHHhhhhccC
Confidence 888777666554
No 107
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.93 E-value=6.5e-25 Score=224.19 Aligned_cols=331 Identities=15% Similarity=0.093 Sum_probs=228.0
Q ss_pred hHHHHHHHHHHhccC-CCCCc------CCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 010897 69 EPECDKLVMASINKN-YVDMD------EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n-~~~~~------~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~ 141 (498)
+|.+.+++.+.+... ...+. ..+....+++.+++++++++|.+. ..+++++|++|+.+++.++..+
T Consensus 36 ~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~------~~i~~~sGt~a~~~~~~~~~~~- 108 (407)
T 2dkj_A 36 SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW------ANVQPHSGSQANMAVYMALMEP- 108 (407)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCCT-
T ss_pred CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc------ceEEecchHHHHHHHHHHhcCC-
Confidence 688888888887542 11111 112223566667789999999864 1344455677998888877322
Q ss_pred HHHHHhcCCCCCCcEEEEcCCchhHH---HHHHHHcCCeeEEEEe--cCCccccCHHHHHHHhhh-CCeEEEEeeccCCc
Q 010897 142 QQKRKEQGKPYDKPNIVTGANVQVCW---EKFARYFEVELKEVKL--EEGYYVMNPVKAVELVDE-NTICVAAILGSTLT 215 (498)
Q Consensus 142 ~~~~~~~g~~~~~~~Iv~s~~~h~~~---~~~~~~~g~~~~~v~~--~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~t 215 (498)
+++|++++++|.++ ..+++..|..++.+++ +++++.+|+++|++++++ ++++|+++.++|+
T Consensus 109 ------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~- 175 (407)
T 2dkj_A 109 ------------GDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP- 175 (407)
T ss_dssp ------------TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred ------------CCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC-
Confidence 46899999999877 4555666775556665 433578999999999985 8898888778775
Q ss_pred ccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCC
Q 010897 216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD 295 (498)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~ 295 (498)
...|+++|.++|+++ |+++++|++|+.+..+. ...... ....|++..+.||++.++.+ |+++.++++.
T Consensus 176 -~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~~--~~~~~~--~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~ 243 (407)
T 2dkj_A 176 -RFWDFKAFREIADEV------GAYLVVDMAHFAGLVAA--GLHPNP--LPYAHVVTSTTHKTLRGPRG-GLILSNDPEL 243 (407)
T ss_dssp -SCCCHHHHHHHHHHH------TCEEEEECTTTHHHHHT--TCSCCC--TTTCSEEEEESSGGGCCCSC-EEEEESCHHH
T ss_pred -CCCCHHHHHHHHHHc------CCEEEEEcccccccccc--CccCCc--cccccEEEEeccccCCCCCc-eEEEECCHHH
Confidence 778999999999999 99999999998743211 111101 12478999999998876665 9998764332
Q ss_pred CCccccc-ccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCcc
Q 010897 296 LPDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (498)
Q Consensus 296 l~~~~~~-~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 374 (498)
. +.+.. ...+. .++.+...+.+..+++..+..+++.+..++..++++++.+.|+++ +++++.++...+
T Consensus 244 ~-~~l~~~~~~~~---------~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 312 (407)
T 2dkj_A 244 G-KRIDKLIFPGI---------QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNH 312 (407)
T ss_dssp H-HHHHHHHTTTT---------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred H-HHHHhhhcccc---------cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCce
Confidence 2 11111 10110 022322334455666666545678889999999999999999998 588876433578
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCC---CCCCeeEEEEeecC----CCCHHHHHHHHHHHHHHHHH
Q 010897 375 LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA---NAENVAVLRVVVRE----DFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~---~~~~~~~lRv~v~~----~~t~~~~~~l~~~l~~~l~~ 443 (498)
++++.++. .+.+..++.+.|.++|+.+.....+. ......++|+++.. ..+.++++++++.|+++++.
T Consensus 313 ~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 313 LFLVDLRP-KGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp EEEEECGG-GTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred EEEEECcc-cCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 88888853 13567889999999999876543220 01124579999864 26899999999999999876
No 108
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.93 E-value=1.1e-25 Score=227.44 Aligned_cols=323 Identities=15% Similarity=0.067 Sum_probs=216.0
Q ss_pred hHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHh
Q 010897 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE 147 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~~~~~ 147 (498)
++.+.+++.+.+....+ ...+...+ +++.+++++|.+. +++++||++|+.+++.++ ..
T Consensus 16 ~~~~~~a~~~~~~~~~~--~~~~~~~~----l~~~la~~~~~~~-------~i~~~sgt~al~~~l~~l~~~-------- 74 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNWF--ILGDEDKK----FEQEFADYCNVNY-------CIGCGNGLDALHLILKGYDIG-------- 74 (373)
T ss_dssp HHHHHHHHHHHHHHTCC--SSSHHHHH----HHHHHHHHHTSSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHHHCCCc--cCCchHHH----HHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence 45677777777766442 33344444 4455888888863 899999999999988876 22
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHH
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL 227 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~l 227 (498)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|++|...|+++|.++
T Consensus 75 -----~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l 146 (373)
T 3frk_A 75 -----FGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRI 146 (373)
T ss_dssp -----TTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHH
T ss_pred -----CcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHH
Confidence 1468999999999999999999999999999865689999999999998888776 67899999999999999
Q ss_pred HHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEc--CCccCCCCCCeEEEEEeCCCCCCcccccccC
Q 010897 228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305 (498)
Q Consensus 228 a~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s--~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~ 305 (498)
|+++ |+++|+|+||+.+.. +.... .+ ...|.+++| +||++.++...|+++.++++.. +.+.....
T Consensus 147 ~~~~------~~~li~D~a~~~g~~-~~~~~----~~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~-~~~~~~~~ 213 (373)
T 3frk_A 147 AKKY------NLKLIEDAAQAHGSL-YKGMK----VG-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLA-EKIKALSN 213 (373)
T ss_dssp HHHH------TCEEEEECTTCTTCE-ETTEE----TT-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHH-HHHHHHHB
T ss_pred HHHc------CCEEEEECCcccCCE-ECCEe----cc-ccccEEEEeCcCCCccCccceeEEEEeCCHHHH-HHHHHHHh
Confidence 9999 999999999986542 21111 11 113555555 7899866344677665543221 11111000
Q ss_pred ccCC---CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--CccEEEEEe
Q 010897 306 YLGS---DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVPLVAFSL 380 (498)
Q Consensus 306 yl~~---~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~~~v~f~~ 380 (498)
+-.. .....+.++. +..+.+++.....+++.+..++..++++++.+.|++++ +.+...+. ..+++.|.+
T Consensus 214 ~g~~~~~~~~~~g~~~~-----~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 287 (373)
T 3frk_A 214 YGSEKKYHHIYKGFNSR-----LDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVI 287 (373)
T ss_dssp TTCSBTTBCCSCCCBCC-----CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEE
T ss_pred cCcccCCccccccccCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEE
Confidence 0000 0001111111 11222333333345677888889999999999999988 77653321 223333433
Q ss_pred cCCCCCCHHHHHHHHHhcCcEeeeec-CCCCC-------------------CCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 381 KDSSAHTVFEISEGLRKFGWIVPAYT-MPANA-------------------ENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~G~~v~~~~-~~~~~-------------------~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
.. .+..++.+.|.++|+.++.+. .|... .....+|++++..+|.+|++++++.|+++
T Consensus 288 ~~---~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~ 364 (373)
T 3frk_A 288 RS---EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAW 364 (373)
T ss_dssp EE---SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTC
T ss_pred Ee---CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 22 257799999999999876432 11100 01168999999999999999888877765
Q ss_pred HH
Q 010897 441 LK 442 (498)
Q Consensus 441 l~ 442 (498)
..
T Consensus 365 ~~ 366 (373)
T 3frk_A 365 KL 366 (373)
T ss_dssp C-
T ss_pred hh
Confidence 43
No 109
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.93 E-value=2.5e-25 Score=223.44 Aligned_cols=331 Identities=13% Similarity=0.066 Sum_probs=228.6
Q ss_pred CCChHHHHHHHHHHhccC--CC--CCcC---CcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecCh-hHHHHHHHHHH
Q 010897 66 TWMEPECDKLVMASINKN--YV--DMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS-SEAIMLAGLAF 137 (498)
Q Consensus 66 ~~~~~~~~~~l~~~~~~n--~~--~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~-sea~~la~~a~ 137 (498)
.++++.+.+++.+.+... .. .+.. ++....+.+++++++++++|.+.+ ..+++|+|+ ++|+.+++.++
T Consensus 12 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~----~~v~~~~g~gt~al~~~~~~l 87 (360)
T 1w23_A 12 SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND----YQILFLQGGASLQFTMLPMNL 87 (360)
T ss_dssp CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEECCcchHHHHHHHHHh
Confidence 356788889888887542 11 1111 566677788999999999999631 248899998 99998888776
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHH-HhhhCCeEEEEeeccCCcc
Q 010897 138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE-LVDENTICVAAILGSTLTG 216 (498)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~-~i~~~t~~v~~~~~~t~tG 216 (498)
..+ | ..++.|+++..+|.++.. ++..| +++.++++++++.+|+++|++ +++++|++|++++++||||
T Consensus 88 ~~~--------~--~~g~~vi~~~~~~~~~~~-~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG 155 (360)
T 1w23_A 88 LTK--------G--TIGNYVLTGSWSEKALKE-AKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYG 155 (360)
T ss_dssp CCT--------T--CEEEEEECSHHHHHHHHH-HHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTT
T ss_pred cCC--------C--CcccEEEecchhHHHHHH-HHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcc
Confidence 431 1 113478888888887543 57789 999999975335589999999 8888899999999999999
Q ss_pred cccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCC
Q 010897 217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296 (498)
Q Consensus 217 ~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l 296 (498)
.+.| + |++++ |+++++|++|+.+..++ ++ ...|+++.++||+++ +.|+|+++++++ .+
T Consensus 156 ~~~~--~---i~~~~------~~~li~D~a~~~~~~~~-------~~--~~~di~~~s~sK~~~-~~G~G~~~~~~~-~~ 213 (360)
T 1w23_A 156 TQYQ--N---FPEIN------HAPLIADMSSDILSRPL-------KV--NQFGMIYAGAQKNLG-PSGVTVVIVKKD-LL 213 (360)
T ss_dssp EECS--S---CCCCC------SSCEEEECTTTTTSSCC-------CG--GGCSEEEEETTTTTS-CTTCEEEEEEHH-HH
T ss_pred eecc--c---ccccC------CceEEEechhhcCCCCc-------Cc--ccCCEEEEEcccccC-CCCcEEEEEcHH-HH
Confidence 9966 3 33377 99999999998765321 11 123789999999875 779999998753 11
Q ss_pred CcccccccCccCCCC---CCccccCCCchHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EEee-CC
Q 010897 297 PDELVFHINYLGSDQ---PTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRF-EILS-KD 370 (498)
Q Consensus 297 ~~~~~~~~~yl~~~~---~~~~l~~sr~~~~~~a~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~-~~ 370 (498)
.........++.... ..+ ..++.+...+.++..++..+..+ ++.++.++..++++++.+.|++++++ .... +.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 292 (360)
T 1w23_A 214 NTKVEQVPTMLQYATHIKSDS-LYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG 292 (360)
T ss_dssp CSCCTTCCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG
T ss_pred hhcccCCcchhhhhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCch
Confidence 111001111110000 000 11344444556666777666555 68889999999999999999998765 5442 21
Q ss_pred CCcc-EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 371 VGVP-LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 371 ~~~~-~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
...+ +++|++++ ..+..++.++|.++|+.+.... ....++|++++...+.++++++++.|+++++
T Consensus 293 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~~~~~-----~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 293 SRSLMNVTFNLRN--EELNQQFLAKAKEQGFVGLNGH-----RSVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp GBCSSEEEEECSS--HHHHHHHHHHHHHTTEESCBCC-----TTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred hccCcEEEEEcCC--CccHHHHHHHHHHCCeeeecCC-----CCCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 1344 88888743 2345688899999998763321 1135699999888899999999999988764
No 110
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.93 E-value=3.1e-24 Score=223.02 Aligned_cols=364 Identities=14% Similarity=0.092 Sum_probs=226.9
Q ss_pred HHHHHHHHhhhccCCCCCcccccccCCChHHHHHHHHHHhccCCC-CC------cCCcchHHHHHHHHHHHHHHcCCCCC
Q 010897 41 AAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYV-DM------DEYPVTTELQNRCVNMIAHLFNTPVA 113 (498)
Q Consensus 41 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~n~~-~~------~~~~~~~~le~~~~~~la~l~g~~~~ 113 (498)
++++.+.++...+. ..++|.. -+.+++|.+.+++...+...+. .+ ...+...++|+.+++++++++|.+.+
T Consensus 41 ~~~~~~~~e~~rq~-~~i~lia-s~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~ 118 (490)
T 2a7v_A 41 EMWELLQREKDRQC-RGLELIA-SENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA 118 (490)
T ss_dssp HHHHHHHHHHHHHH-HSEECCT-TCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHH-cCceEEC-CCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcc
Confidence 36666654433221 1222222 1335678999998877654321 11 11233468888899999999999752
Q ss_pred CCCCc-ceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHH--------HHHHHcCCeeEEEE--
Q 010897 114 DDKTA-VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE--------KFARYFEVELKEVK-- 182 (498)
Q Consensus 114 ~~~~~-~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~--------~~~~~~g~~~~~v~-- 182 (498)
. . ..+++++|++||+.++.++.++ +++|+++++.|.++. ..+...|..++.++
T Consensus 119 ~---~~~~v~~~sGt~An~~al~al~~p-------------GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~ 182 (490)
T 2a7v_A 119 Q---WGVNVQPYSGSPANLAVYTALLQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYK 182 (490)
T ss_dssp T---EEEECCCSSHHHHHHHHHHHHCCS-------------CEECCC-------------------------------CC
T ss_pred c---CceEEeCCchHHHHHHHHHHHcCC-------------CCEecccCccccccccchhhhcchhHHHcCCeEEEEecc
Confidence 1 1 2456668999999998887543 578999888775421 13345666544444
Q ss_pred ecCCccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcc
Q 010897 183 LEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 261 (498)
Q Consensus 183 ~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~ 261 (498)
++++++.+|+++|++++.+ +|++|+++.+++ |...|+++|.++|+++ |+++|+|+||+.+.. .......
T Consensus 183 vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~--~~~~dl~~i~~ia~~~------g~~livD~Ah~~glv--~~g~~~~ 252 (490)
T 2a7v_A 183 LNPKTGLIDYNQLALTARLFRPRLIIAGTSAY--ARLIDYARMREVCDEV------KAHLLADMAHISGLV--AAKVIPS 252 (490)
T ss_dssp BCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHT------TCEEEEECGGGHHHH--HTTSSCC
T ss_pred cccccCCcCHHHHHHHHhhcCCcEEEEcCCCC--CCcccHHHHHHHHHHc------CCEEEEccccccccc--cCCcCCC
Confidence 4544589999999999964 788877665554 4677999999999999 999999999864321 1111111
Q ss_pred ccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCC-------------CCCcccccccCccCCCCCCccccCCCchHHHHHH
Q 010897 262 DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD-------------DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ 328 (498)
Q Consensus 262 ~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~-------------~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~ 328 (498)
.+ +++|++++++||++.+|.| |+++.++.. .+.+. ++. .+. ...+++.....+.++
T Consensus 253 ~~--~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~--i~~-~~~-----~g~qggp~~~~iaAl 321 (490)
T 2a7v_A 253 PF--KHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDR--INF-AVF-----PSLQGGPHNHAIAAV 321 (490)
T ss_dssp GG--GTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHH--HHH-HHT-----TTTCCSCCHHHHHHH
T ss_pred CC--CCCCEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHH--HHH-Hhc-----ccCCCCchHHHHHHH
Confidence 12 3689999999999888766 888877631 01000 000 000 011234444445555
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCC
Q 010897 329 YYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMP 408 (498)
Q Consensus 329 ~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~ 408 (498)
.+++.....+.+++..++..+++++|.+.|++.+ ++++......+++.+.+.+ .+++..++.+.|.+.|+.+.....|
T Consensus 322 a~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-~~v~~~~t~t~lv~vdl~~-~g~~~~~~~~~L~~~GI~v~~~~~p 399 (490)
T 2a7v_A 322 AVALKQACTPMFREYSLQVLKNARAMADALLERG-YSLVSGGTDNHLVLVDLRP-KGLDGARAERVLELVSITANKNTCP 399 (490)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTT-TTCCHHHHHHHHHHTTEECEEECCT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCCCeEEEEEeCC-CCCCHHHHHHHHHhCCeEEecCccC
Confidence 5666555445668888999999999999999985 9988643356788888753 3567888999999999988654434
Q ss_pred CC--CCCeeEEEEee----cCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 409 AN--AENVAVLRVVV----REDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 409 ~~--~~~~~~lRv~v----~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
.. ......+|+++ +..+++++++++.+.|.++++...
T Consensus 400 ~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~~ 442 (490)
T 2a7v_A 400 GDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGL 442 (490)
T ss_dssp TCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 32 12345699965 345788999999999999987543
No 111
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.93 E-value=2.2e-24 Score=217.96 Aligned_cols=317 Identities=11% Similarity=0.033 Sum_probs=218.1
Q ss_pred HHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcC-CCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010897 75 LVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD 153 (498)
Q Consensus 75 ~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~ 153 (498)
.+.+.+......|...++..+++++ ++++++ .+. ..+++|+|+++|+.+++.++.++
T Consensus 47 ~~~~~~~~~~~~y~~~~g~~~l~~~----la~~~~~~~~-----~~v~~~~g~~~a~~~~~~~l~~~------------- 104 (375)
T 3op7_A 47 DFYKKLQGTKLNYGWIEGSPAFKKS----VSQLYTGVKP-----EQILQTNGATGANLLVLYSLIEP------------- 104 (375)
T ss_dssp HHHHHHHTSCCSSCCTTCCHHHHHH----HHTTSSSCCG-----GGEEEESHHHHHHHHHHHHHCCT-------------
T ss_pred HHHHHHhcCCcCCCCCCChHHHHHH----HHHHhccCCh-----hhEEEcCChHHHHHHHHHHhcCC-------------
Confidence 3444555555555555566666665 666653 433 24899999999999998877432
Q ss_pred CcEEEEcCCchhHHHHHHHHcCCeeEEEEec-CCccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---HHHHHHHHH
Q 010897 154 KPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLT 229 (498)
Q Consensus 154 ~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l~~I~~la~ 229 (498)
+++|+++.++|..+...++..|++++.++++ ++++.+|+++|++++++++++|++++++||||.+.| +++|.++|+
T Consensus 105 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~ 184 (375)
T 3op7_A 105 GDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIAS 184 (375)
T ss_dssp TCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999997 345789999999999999999999999999999999 999999999
Q ss_pred HhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccccCccC
Q 010897 230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLG 308 (498)
Q Consensus 230 ~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~ 308 (498)
++ |+++++|++|+++... + ..........+.+..+.+|.+. ++.++|+++. +++.. +.+.....
T Consensus 185 ~~------~~~li~De~~~~~~~~---~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~-~~~~~~~~--- 249 (375)
T 3op7_A 185 EV------GAYILSDEVYRSFSEL---D-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVT-DILRDYRD--- 249 (375)
T ss_dssp TT------TCEEEEECCSCCCSSS---C-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHHHH-HHHTTTGG---
T ss_pred Hc------CCEEEEEccccccccc---C-CCchhhhcCCEEEEeEChhhcCCcccceEEEEe-CHHHH-HHHHHHHh---
Confidence 99 9999999999886531 1 1111111234567778899885 5677899986 33221 11110000
Q ss_pred CCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCH
Q 010897 309 SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTV 388 (498)
Q Consensus 309 ~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~ 388 (498)
..+ ++.+.....+...++.. ..+.+++..+...++++++.+.|++.+++.+..+. ...++.+.++. ..+.
T Consensus 250 ----~~~--~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 319 (375)
T 3op7_A 250 ----YTM--ICAGVFDDLVAQLALAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPA-VVSTSFVKIAV--DMPM 319 (375)
T ss_dssp ----GTT--SCCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS-SSSCEEEEECC--SSCH
T ss_pred ----hhc--cCCCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC-CeEEEeEEcCC--CCCH
Confidence 001 12222233333334432 23345666677788999999999998888876543 33444455532 4577
Q ss_pred HHHHHHH-HhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 389 FEISEGL-RKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 389 ~~l~~~L-~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
.+++++| .++|+.+....... ...++|++++. +.++++++++.|+++++.
T Consensus 320 ~~~~~~ll~~~gi~v~~g~~~~---~~~~iRi~~~~--~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 320 EDFCLQLLQEHGVLLVPGNRFE---RDGYVRLGFAC--EQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp HHHHHHHHHHHCEECEEGGGGT---CTTEEEECCCS--CHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCEEEeChhhhC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 8888887 58898875433221 14679999864 447888888888877754
No 112
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=2.3e-25 Score=224.99 Aligned_cols=321 Identities=14% Similarity=0.092 Sum_probs=218.1
Q ss_pred HHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHhcCC
Q 010897 72 CDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQGK 150 (498)
Q Consensus 72 ~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~~~~~~g~ 150 (498)
+.+++.+.+..... ...+... ++++.+++++|.+. +++++||++|+.+++.++ ..
T Consensus 21 ~~~~~~~~~~~~~~--~~~~~~~----~l~~~la~~~~~~~-------~~~~~~gt~a~~~~~~~~~~~----------- 76 (374)
T 3uwc_A 21 YLNDLREFIKTADF--TLGAELE----KFEKRFAALHNAPH-------AIGVGTGTDALAMSFKMLNIG----------- 76 (374)
T ss_dssp HHHHHHHHHHHTCC--SSCHHHH----HHHHHHHHHTTCSE-------EEEESCHHHHHHHHHHHTTCC-----------
T ss_pred HHHHHHHHHHcCCc--ccChhHH----HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC-----------
Confidence 77777777665432 2334444 44556888888763 889999999998888776 22
Q ss_pred CCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHH
Q 010897 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK 230 (498)
Q Consensus 151 ~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~ 230 (498)
.+++|+++.++|.++..+++..|++++.+++++ ++.+|+++|++++++++++|+ ++|+||.+.|+++|.++|++
T Consensus 77 --~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~ 150 (374)
T 3uwc_A 77 --AGDEVITCANTFIASVGAIVQAGATPVLVDSEN-GYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKK 150 (374)
T ss_dssp --TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHH
T ss_pred --CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHH
Confidence 146899999999999999999999999999984 588999999999998888776 88999999999999999999
Q ss_pred hhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCC--ccCCCCCCeEEEEEeCCCCCCcccccccCccC
Q 010897 231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDDLPDELVFHINYLG 308 (498)
Q Consensus 231 ~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~h--K~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~ 308 (498)
+ |+++|+|++|+.+.. + .... .. ...|+++.++| |++.++...|+++.++++.. +.+.....+-.
T Consensus 151 ~------~~~li~D~~~~~g~~-~-~~~~---~~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~-~~~~~~~~~~~ 217 (374)
T 3uwc_A 151 H------NLHIVEDACQTILGR-I-NDKF---VG-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYA-EKLRLYRNHGL 217 (374)
T ss_dssp T------TCEEEEECTTCTTCE-E-TTEE---TT-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHH-HHHHHHTBTTE
T ss_pred c------CCEEEEeCCCccCce-e-CCee---cc-ccccEEEEeCCCCCcCCccceeEEEEeCCHHHH-HHHHHHHhcCc
Confidence 9 999999999987542 2 1110 11 12588888877 99866344677766553221 11110000000
Q ss_pred CC---CCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEeeCCC--CccEEEEEecC
Q 010897 309 SD---QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR-FEILSKDV--GVPLVAFSLKD 382 (498)
Q Consensus 309 ~~---~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~~~~~~~--~~~~v~f~~~~ 382 (498)
.. ....+.+.. +..+.+++.....+++.+..++..++++++.+.|+++++ +++...+. ..+++.|.+..
T Consensus 218 ~~~~~~~~~~~~~~-----~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (374)
T 3uwc_A 218 INRDVCVEYGINCR-----MDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV 292 (374)
T ss_dssp EETTEESSCCCBCB-----CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE
T ss_pred cccCccccccccCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc
Confidence 00 000111111 111222233333456778888899999999999999988 87654332 12223333322
Q ss_pred CCCCCHHHHHHHHHhcCcEeeeec-CCCCC-------------------CCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 383 SSAHTVFEISEGLRKFGWIVPAYT-MPANA-------------------ENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 383 ~~~~~~~~l~~~L~~~G~~v~~~~-~~~~~-------------------~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.+..++.++|.++|+.+.... .+... .....+|++++..+|.++++++++.|+++++
T Consensus 293 ---~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~ 369 (374)
T 3uwc_A 293 ---KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL 369 (374)
T ss_dssp ---TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 256799999999999875432 11000 0126899999999999999999999998876
Q ss_pred H
Q 010897 443 E 443 (498)
Q Consensus 443 ~ 443 (498)
+
T Consensus 370 ~ 370 (374)
T 3uwc_A 370 E 370 (374)
T ss_dssp T
T ss_pred h
Confidence 4
No 113
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.93 E-value=1.6e-24 Score=221.06 Aligned_cols=326 Identities=13% Similarity=0.055 Sum_probs=221.7
Q ss_pred ChHHHHHHHHHHhccCCCC---CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNYVD---MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~---~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
++|.+.+++.+.+...... +...........++++.+++++|.+. ..++++|+ .++..++.++.+. .
T Consensus 61 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~------~i~~~sG~-~a~~~~~~~l~~~-~-- 130 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA------ALVFSSAY-NANDATLSTLRVL-F-- 130 (401)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE------EEEESCHH-HHHHHHHHHHHHH-S--
T ss_pred CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc------EEEECCcH-HHHHHHHHHHhcC-C--
Confidence 4567888888877652211 11111223344467777899998742 25555554 4777666554321 0
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhh----hCCeEEEEeeccCCcccccC
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFED 220 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~----~~t~~v~~~~~~t~tG~~~~ 220 (498)
.+++|+++.++|.++...++..|++++.++.+ |+++|+++++ +++++|++++++|+||.+.|
T Consensus 131 --------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~ 196 (401)
T 2bwn_A 131 --------PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP 196 (401)
T ss_dssp --------TTCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC
T ss_pred --------CCCEEEECchhhHHHHHHHHHcCCeEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC
Confidence 13689999999999999999999999999863 6888888887 57899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCC---ccccCC-CCeeEEEEcCCccCCCCCCeEEEEEeCCCCC
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL---EWDFRL-PLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~---~~~~~~-~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l 296 (498)
+++|.++|+++ |+++++|++|+.+. +.+.. .....+ +..|.+..+.+|.+.. .| ||++.+ ++ +
T Consensus 197 l~~i~~l~~~~------~~~li~Dea~~~g~---~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~G-G~~~~~-~~-~ 263 (401)
T 2bwn_A 197 IKEICDIAEEF------GALTYIDEVHAVGM---YGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FG-GYIAAS-AR-M 263 (401)
T ss_dssp HHHHHHHHHHH------TCEEEEECTTTTTT---SSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CC-EEEEEC-HH-H
T ss_pred HHHHHHHHHHc------CCEEEEeccccccc---cCCCCceeeeccCccccCcEEEeechhhccC-CC-CEEecC-HH-H
Confidence 99999999999 99999999998442 11111 001122 2467888899999865 34 777653 21 1
Q ss_pred Cccccc-ccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccE
Q 010897 297 PDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPL 375 (498)
Q Consensus 297 ~~~~~~-~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 375 (498)
.+.+.. ...+.. + .++. .....+..++++.+...++.++.++..++++++.+.|+++ +++++.+ ..++
T Consensus 264 ~~~l~~~~~~~~~------~-~~~~-~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~~~ 332 (401)
T 2bwn_A 264 VDAVRSYAPGFIF------S-TSLP-PAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDH--GSHI 332 (401)
T ss_dssp HHHHHHHCHHHHT------S-BCCC-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCC--SSSC
T ss_pred HHHHHHhCcCcee------c-CCCC-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCC--CCCe
Confidence 111110 001100 0 0222 2445556677777766677888999999999999999988 5777643 4568
Q ss_pred EEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 376 VAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 376 v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
++|.++. +.+..++.++|. ++|+.+.....+....+..++|++++..++.++++++++.|++++++
T Consensus 333 ~~~~~~~--~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 333 VPVVIGD--PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp EEEECCC--HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred EEEEeCC--hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 8888743 245678999996 78998765433222123468999998888999999999999888754
No 114
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.93 E-value=2.9e-24 Score=215.89 Aligned_cols=284 Identities=15% Similarity=0.085 Sum_probs=204.8
Q ss_pred HHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCC-cEEEEcCCchhHHHHHHHHcCCe
Q 010897 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVE 177 (498)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~-~~Iv~s~~~h~~~~~~~~~~g~~ 177 (498)
++++.+++++|.+.+ .+++|+|+++++.+++.++.++ + ++|+++.++|..+...++..|++
T Consensus 62 ~lr~~la~~~~~~~~-----~v~~~~G~~~ai~~~~~~~~~~-------------g~d~Vl~~~p~~~~~~~~~~~~g~~ 123 (356)
T 1fg7_A 62 AVIENYAQYAGVKPE-----QVLVSRGADEGIELLIRAFCEP-------------GKDAILYCPPTYGMYSVSAETIGVE 123 (356)
T ss_dssp HHHHHHHHHHTSCGG-----GEEEESHHHHHHHHHHHHHCCT-------------TTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred HHHHHHHHHhCCChH-----HEEEcCCHHHHHHHHHHHHhCC-------------CCCEEEEeCCChHHHHHHHHHcCCE
Confidence 455568888888642 4999999999999888887432 4 68999999999999999999999
Q ss_pred eEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHH--hhcccCCCceEEEecCccccccccc
Q 010897 178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFIAPFL 255 (498)
Q Consensus 178 ~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~--~~~~~~~~~~l~vD~A~~g~~~~~~ 255 (498)
++.+|++++ +.+|+++|+++++ ++++|++++++||||.+.|.++|.++++. + |+++++|++|+++.. .
T Consensus 124 ~~~v~~~~~-~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~-~- 193 (356)
T 1fg7_A 124 CRTVPTLDN-WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG------KAIVVADEAYIEFCP-Q- 193 (356)
T ss_dssp EEECCCCTT-SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT------TCEEEEECTTGGGSG-G-
T ss_pred EEEeeCCCC-CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC------CCEEEEEccchhhcC-C-
Confidence 999998754 7899999999998 89999999999999999887666655554 7 999999999998651 1
Q ss_pred CCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHH
Q 010897 256 YPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR 334 (498)
Q Consensus 256 ~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~ 334 (498)
............+.+..+.+|+++ ++.++|+++.+. +.. +.+... ...+ + ...+++.+++..
T Consensus 194 -~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~-~~l~~~-------~~~~----~---~~~~~~~a~~~~ 256 (356)
T 1fg7_A 194 -ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE-EVI-NLLMKV-------IAPY----P---LSTPVADIAAQA 256 (356)
T ss_dssp -GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH-HHH-HHHHHH-------SCSS----C---SCHHHHHHHHHH
T ss_pred -CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCH-HHH-HHHHHh-------cCCC----C---CCHHHHHHHHHH
Confidence 111101121234677789999875 666789998743 221 111110 0111 1 233456667777
Q ss_pred hcHHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeee-ecCCCC
Q 010897 335 LGFEG---YKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPA-YTMPAN 410 (498)
Q Consensus 335 lg~~g---~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~-~~~~~~ 410 (498)
+...+ +++..++..++++++.+.|++++++....++ ..+++.++++ +..++.++|.++|+.+.. ...+.
T Consensus 257 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~g~~~~- 329 (356)
T 1fg7_A 257 LSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS-ETNYILARFK-----ASSAVFKSLWDQGIILRDQNKQPS- 329 (356)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC-SSSEEEEEET-----THHHHHHHHHHTTEECEECTTSTT-
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC-CCeEEEEECC-----CHHHHHHHHHHCCEEEEECCCCCC-
Confidence 76655 5777788888999999999998764333333 5678888874 567899999999998765 22211
Q ss_pred CCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 411 AENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 411 ~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
. ..++|++++ +.++++++++.|++
T Consensus 330 -~-~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 330 -L-SGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp -C-TTEEEEECC---CHHHHHHHHHHHHT
T ss_pred -C-CCeEEEEeC---CHHHHHHHHHHHHh
Confidence 1 247999987 67888888877764
No 115
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=2e-24 Score=219.65 Aligned_cols=329 Identities=12% Similarity=0.077 Sum_probs=221.7
Q ss_pred hHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHh
Q 010897 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE 147 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~~~~~ 147 (498)
++.+.+++.+.+...... ..+... ++++.+++++|.+. +++|+||++|+.+++.++ ..
T Consensus 19 ~~~~~~a~~~~~~~~~~~--~~~~~~----~l~~~la~~~~~~~-------~~~~~~gt~al~~~~~~~~~~-------- 77 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWIT--TGPKNQ----ELEAAFCRLTGNQY-------AVAVSSATAGMHIALMALGIG-------- 77 (393)
T ss_dssp CHHHHHHHHHHHHHTCCS--SSHHHH----HHHHHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHHhcCCcC--CChHHH----HHHHHHHHHhCCCc-------EEEecChHHHHHHHHHHcCCC--------
Confidence 356678888877664332 223333 45556888888753 899999999999998876 22
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHH
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL 227 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~l 227 (498)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+++ +++|.+.|+++|.++
T Consensus 78 -----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l 149 (393)
T 1mdo_A 78 -----EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYAL 149 (393)
T ss_dssp -----TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHH
T ss_pred -----CCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHH
Confidence 146899999999999999999999999999987667899999999998888887654 479999999999999
Q ss_pred HHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCC--ccCCCCCCeEEEEEeCCCCCCccccccc-
Q 010897 228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDDLPDELVFHI- 304 (498)
Q Consensus 228 a~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~h--K~l~~p~g~g~~~~~~~~~l~~~~~~~~- 304 (498)
|+++ |+++++|++|+.+... ... .++. .|+++.|+| |++.++ .+|+++.++++..........
T Consensus 150 ~~~~------~~~li~D~a~~~g~~~-~~~----~~~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~ 215 (393)
T 1mdo_A 150 GERY------GIPVIEDAAHATGTSY-KGR----HIGA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFH 215 (393)
T ss_dssp HHHH------TCCBCEECTTCTTCEE-TTE----ETTS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBT
T ss_pred HHHc------CCeEEEECccccCCeE-CCe----ecCC--CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhc
Confidence 9999 9999999999864321 111 1111 688888988 998654 578887654432211100000
Q ss_pred Cc--------cCCCCCCcc--ccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC----
Q 010897 305 NY--------LGSDQPTFT--LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD---- 370 (498)
Q Consensus 305 ~y--------l~~~~~~~~--l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---- 370 (498)
.. .......+. ..|.......+...+++.. .+++++..++..++++++.+.|++++ +++...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~ 292 (393)
T 1mdo_A 216 GLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQ--LQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEH 292 (393)
T ss_dssp TEECC-----------CCEESSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCE
T ss_pred CCcccchhhhcccccccccccccCccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCC
Confidence 00 000000010 0011000122222222222 24567788888889999999999988 8876322
Q ss_pred -CCccEEEEEecCC-CCCCHHHHHHHHHhcCcEeeeecCCC-------------CCC-----CeeEEEEeecCCCCHHHH
Q 010897 371 -VGVPLVAFSLKDS-SAHTVFEISEGLRKFGWIVPAYTMPA-------------NAE-----NVAVLRVVVREDFSRSLV 430 (498)
Q Consensus 371 -~~~~~v~f~~~~~-~~~~~~~l~~~L~~~G~~v~~~~~~~-------------~~~-----~~~~lRv~v~~~~t~~~~ 430 (498)
....++.+++++. .+.+..++.+.|.++|+.++....+. ... ...++|++++..+|.+++
T Consensus 293 ~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i 372 (393)
T 1mdo_A 293 IHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDF 372 (393)
T ss_dssp ECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHH
T ss_pred CceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHH
Confidence 1345777877420 03567899999999999876543220 000 123799999988999999
Q ss_pred HHHHHHHHHHHHH
Q 010897 431 ERLISHIEEVLKE 443 (498)
Q Consensus 431 ~~l~~~l~~~l~~ 443 (498)
+++++.|+++++.
T Consensus 373 ~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 373 DRVITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 116
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.93 E-value=1.1e-24 Score=222.33 Aligned_cols=331 Identities=13% Similarity=0.074 Sum_probs=226.8
Q ss_pred hHHHHHHHHHHhccCC-CC------CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 010897 69 EPECDKLVMASINKNY-VD------MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~-~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~ 141 (498)
++.+.+++.+.+.... .. +...+...++++.+++++++++|.+. ..+++++|++|+.+++.++.++
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~------~~i~~~sGt~a~~~a~~~~~~~- 108 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH------ANVQPHSGAQANMAVYFTVLEH- 108 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCCT-
T ss_pred CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc------eEEEecCcHHHHHHHHHHhcCC-
Confidence 6888898888875321 11 12234566788888899999999874 1344445599999998887332
Q ss_pred HHHHHhcCCCCCCcEEEEcCCchhHHHH-H--HHHcCC--eeEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCCc
Q 010897 142 QQKRKEQGKPYDKPNIVTGANVQVCWEK-F--ARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLT 215 (498)
Q Consensus 142 ~~~~~~~g~~~~~~~Iv~s~~~h~~~~~-~--~~~~g~--~~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~t 215 (498)
+++|++++++|.++.. . +...|. +++.++++++++.+|+++|++++++ +|++|++ .+++ +
T Consensus 109 ------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~-~ 174 (405)
T 2vi8_A 109 ------------GDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA-AAAA-Y 174 (405)
T ss_dssp ------------TCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSS-C
T ss_pred ------------CCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEE-eCCC-C
Confidence 4689999999987643 1 123344 6666776534578999999999986 7887765 3333 4
Q ss_pred ccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCC
Q 010897 216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD 295 (498)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~ 295 (498)
|...|+++|.++|+++ |+++|+|++|+.+..+. ....+ .+...|++..++||+++++.| |+++.+. +.
T Consensus 175 ~~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~~--~~~~~--~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~ 242 (405)
T 2vi8_A 175 PRIIDFAKFREIADEV------GAYLMVDMAHIAGLVAA--GLHPN--PVPYAHFVTTTTHKTLRGPRG-GMILCQE-QF 242 (405)
T ss_dssp CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHHHT--TSSCC--STTTCSEEEEESSSTTCCCSC-EEEEECH-HH
T ss_pred CccCCHHHHHHHHHHc------CCEEEEEcccccccccc--CcCCC--ccccCCEEEEeccccCCCCCC-eEEEEcH-HH
Confidence 6777999999999999 99999999998543221 11111 123578889999999987888 9888652 22
Q ss_pred CCcccccc-cCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCcc
Q 010897 296 LPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (498)
Q Consensus 296 l~~~~~~~-~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 374 (498)
. +.+... ..+ .. ++.+.....++.+++..+..+++.+..++..++++++.+.|+++ +++++.+....+
T Consensus 243 ~-~~l~~~~~~~--------~~-~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 311 (405)
T 2vi8_A 243 A-KQIDKAIFPG--------IQ-GGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNH 311 (405)
T ss_dssp H-HHHHHHHTTT--------TC-SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred H-HHHHhhhccc--------cc-CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCce
Confidence 1 211110 011 11 23233445555566665544677889999999999999999998 588876533567
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCC---CCCCeeEEEEeecC----CCCHHHHHHHHHHHHHHHHHH
Q 010897 375 LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA---NAENVAVLRVVVRE----DFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~---~~~~~~~lRv~v~~----~~t~~~~~~l~~~l~~~l~~l 444 (498)
++.+.++.. +.+..++.+.|.++|+.+.....+. .......+|+++.. ..+.++++++++.|+++++.+
T Consensus 312 ~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 312 LLLVDLRPQ-QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp EEEEECGGG-TCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred EEEEEccCC-CCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 888887531 3567889999999999886543210 01123569999875 467999999999998887543
No 117
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.93 E-value=2.2e-24 Score=222.66 Aligned_cols=356 Identities=10% Similarity=-0.005 Sum_probs=234.8
Q ss_pred ccCCCC--CcccccccCCChHHHHHHHHHHhccCC------------CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCC
Q 010897 52 LDGNPR--LNLASFVTTWMEPECDKLVMASINKNY------------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKT 117 (498)
Q Consensus 52 ~~~~p~--~~~~~~~~~~~~~~~~~~l~~~~~~n~------------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~ 117 (498)
.++||. +++..-......+.+.+++.+...... ..|....+..++++++.+++.+..|...+. ..
T Consensus 33 ~~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~-~~ 111 (435)
T 3piu_A 33 EVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTF-DP 111 (435)
T ss_dssp TTTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCC-CG
T ss_pred cccCCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCC-CH
Confidence 346665 334433333446677777766544322 123444566788888888887766522110 01
Q ss_pred cceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHH-HcCCeeEEEEecC-CccccCHHHH
Q 010897 118 AVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR-YFEVELKEVKLEE-GYYVMNPVKA 195 (498)
Q Consensus 118 ~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~-~~g~~~~~v~~~~-~~~~~d~~~L 195 (498)
..+++|+|+++|+.+++.++.++ ++.|+++.++|.++...++ ..|++++.+++++ +++.+|+++|
T Consensus 112 ~~v~~~~gg~~a~~~~~~~l~~~-------------gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 178 (435)
T 3piu_A 112 NHLVLTAGATSANETFIFCLADP-------------GEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETAL 178 (435)
T ss_dssp GGEEEEEHHHHHHHHHHHHHCCT-------------TCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHH
T ss_pred HHEEEcCChHHHHHHHHHHhcCC-------------CCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHH
Confidence 34999999999999998887432 4689999999999988887 7899999999874 2377999999
Q ss_pred HHHhhh------CCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--ccc-
Q 010897 196 VELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDF- 263 (498)
Q Consensus 196 ~~~i~~------~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~- 263 (498)
++++++ ++++|++++|+||||.+.+ +++|.++|+++ |+++++|++|+++.. ...... ..+
T Consensus 179 ~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~~~~~~~~~~~~ 250 (435)
T 3piu_A 179 EEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK------GIHLISDEIYSGTAF--SSPSFISVMEVL 250 (435)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCC--SSSCCCCHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEecccccccc--CCCCCcCHHHhc
Confidence 999986 7899999999999999955 57888899999 999999999988642 111110 000
Q ss_pred CC---------CCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHH
Q 010897 264 RL---------PLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333 (498)
Q Consensus 264 ~~---------~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~ 333 (498)
.. +..+.+..+.+|.++ ++.++|+++.+++... ..+.....+ ++-+.....+..+.+.
T Consensus 251 ~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~l~ 318 (435)
T 3piu_A 251 KDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV-AAATKMSSF-----------GLVSSQTQHLLSAMLS 318 (435)
T ss_dssp HC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH-HHHHHHGGG-----------SCCCHHHHHHHHHHHH
T ss_pred cccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHH-HHHHHHhhc-----------CCCCHHHHHHHHHHhc
Confidence 00 223477789999885 6778999987543221 111111111 1111122222222222
Q ss_pred Hhc--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCC----CHHHHHHHHHhc-CcEeeeec
Q 010897 334 RLG--FEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAH----TVFEISEGLRKF-GWIVPAYT 406 (498)
Q Consensus 334 ~lg--~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~l~~~L~~~-G~~v~~~~ 406 (498)
... .+.+++..++..++++++.+.|++.+ ++++.+. ...++.+.++..... +..++.++|.++ |+.+....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 396 (435)
T 3piu_A 319 DKKLTKNYIAENHKRLKQRQKKLVSGLQKSG-ISCLNGN-AGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGS 396 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEECCCC-SSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCC-eeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCc
Confidence 111 22446677778889999999999885 8876543 446777777531100 356888888777 98875432
Q ss_pred CCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 407 MPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 407 ~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
... ..+..++|+++... +.++++++++.|+++++++.
T Consensus 397 ~~~-~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 397 SCH-CTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp GGT-CSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred ccC-CCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 211 13456899998544 89999999999999987754
No 118
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.93 E-value=5.2e-24 Score=215.20 Aligned_cols=336 Identities=13% Similarity=0.028 Sum_probs=229.6
Q ss_pred CCCcccccccCC-ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHH
Q 010897 56 PRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134 (498)
Q Consensus 56 p~~~~~~~~~~~-~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~ 134 (498)
..+++.+..+.. +++.+.+++.+.+.. ...|....+..++++++.+++++.+|.+.+. ..+++|+|+++++.+++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~i~~t~g~~~al~~~~ 99 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHS-LNIYPKSAFEESLRAAQRGFFKRRFKIELKE---NELISTLGSREVLFNFP 99 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGG-GGSCCCTTCCHHHHHHHHHHHHHHHSCCCCG---GGEEEESSSHHHHHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhh-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH---HHEEECcCcHHHHHHHH
Confidence 445566555443 467888888877732 2334444466889999999999999985322 34999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
.++.++ .++++|+++.++|..+...++..|++++.+|++++ ..+++ +|++++.+++++|++++|+||
T Consensus 100 ~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-~l~~~~~~~~~~v~~~~p~np 166 (376)
T 3ezs_A 100 SFVLFD-----------YQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE-NDFTP-SLNEKELQEVDLVILNSPNNP 166 (376)
T ss_dssp HHHTTT-----------CSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG-GTSCC-CCCHHHHHHCSEEEECSSCTT
T ss_pred HHHcCC-----------CCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC-CCcch-hHHhhhccCCCEEEEcCCCCC
Confidence 887431 01468999999999999999999999999999764 23555 677777778999999999999
Q ss_pred cccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcc-cc-C-----CCCeeEEEEcCCccC-CCCC
Q 010897 215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DF-R-----LPLVKSINVSGHKYG-LVYA 283 (498)
Q Consensus 215 tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~-~~-~-----~~~~dsi~~s~hK~l-~~p~ 283 (498)
||.+.| +++|.++|+++ |+++++|++|+++.. ....... .. . ....+.+..+.+|++ .++.
T Consensus 167 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 238 (376)
T 3ezs_A 167 TGRTLSLEELISWVKLALKH------DFILINDECYSEIYE--NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGL 238 (376)
T ss_dssp TCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBS--SSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGG
T ss_pred cCCCCCHHHHHHHHHHHHHc------CcEEEEEccchhhcc--CCCCCCHHHccccccccccCcEEEEecchhccCCccc
Confidence 999976 66777789999 999999999998753 1111000 00 0 234677888999988 4778
Q ss_pred CeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010897 284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR 363 (498)
Q Consensus 284 g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~ 363 (498)
++|+++.+ ++.. +.+.....+. . ++.+.....+...++.. .+.+++..++..++++++.+.|+ +
T Consensus 239 r~G~~~~~-~~~~-~~~~~~~~~~-----~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~---~ 302 (376)
T 3ezs_A 239 RSGFIAGD-SRLL-EKYKAFRAYL-----G----YTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK---N 302 (376)
T ss_dssp CCEEEEEC-HHHH-HHHHHHHTTT-----C----CCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST---T
T ss_pred eeEEEeeC-HHHH-HHHHHHHhhh-----c----CCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 89998753 2221 1111100000 1 22222333333334432 23467778888889999999887 3
Q ss_pred eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHh-cCcEeeeecCCC-CCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 364 FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK-FGWIVPAYTMPA-NAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~G~~v~~~~~~~-~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+. .+....++.+.++ +..++.++|.+ +|+.+....... ......++|+++.. +.++++++++.|++++
T Consensus 303 ~~---~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 303 TL---IYPYSFYVYLPVQ-----NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIETYR 372 (376)
T ss_dssp CC---CCSBSSEEEEECS-----CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred CC---CCCcceEEEEECC-----CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHHHHH
Confidence 54 2324566767774 56789999988 899875432211 12345789999863 8899999998888876
Q ss_pred H
Q 010897 442 K 442 (498)
Q Consensus 442 ~ 442 (498)
+
T Consensus 373 ~ 373 (376)
T 3ezs_A 373 E 373 (376)
T ss_dssp C
T ss_pred H
Confidence 4
No 119
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.93 E-value=2.4e-24 Score=214.31 Aligned_cols=306 Identities=14% Similarity=0.086 Sum_probs=217.4
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+.+++|.+.+++.+.+..... | ..++.. ++++.+++++|.+.+ .+++|+|+++++.+++.++ +
T Consensus 27 ~~~~~~~v~~a~~~~~~~~~~-y-~~~~~~----~lr~~la~~~~~~~~-----~i~~t~G~~~~l~~~~~~~--~---- 89 (337)
T 3p1t_A 27 PEAVEPRVQAAIAAAAARINR-Y-PFDAEP----RVMRKLAEHFSCPED-----NLMLVRGIDECFDRISAEF--S---- 89 (337)
T ss_dssp CSCCCHHHHHHHHHHGGGTTS-C-CTTHHH----HHHHHHHHHHTSCGG-----GEEEESHHHHHHHHHHHHS--T----
T ss_pred CCCCCHHHHHHHHHhhhhhcc-C-CCCchH----HHHHHHHHHhCcCHH-----HEEEeCCHHHHHHHHHHhc--C----
Confidence 335678888988887765322 2 123333 455668888888642 4999999999998888775 2
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHH
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL 224 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I 224 (498)
+++|+++.++|..+...++..|++++.+|++++ +.+|+++|+++ .++++|++++++||||.+.|+++|
T Consensus 90 ---------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l 157 (337)
T 3p1t_A 90 ---------SMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDD-LLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGEL 157 (337)
T ss_dssp ---------TSEEEEESSSCSHHHHHHTTSCCEEEEECBCTT-SSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHH
T ss_pred ---------CCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHH
Confidence 468999999999999999999999999999865 78999999886 468899999999999999999999
Q ss_pred HHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccc
Q 010897 225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFH 303 (498)
Q Consensus 225 ~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~ 303 (498)
.++|+++ ++ +++|++|+++.. ..+ . .......+.+..+.+|+++ ++.++||++.+. +.+ ..+.
T Consensus 158 ~~l~~~~------~~-~ivDea~~~~~~--~~~-~--~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~-~~l~-- 221 (337)
T 3p1t_A 158 DQLRQRA------GK-LLIDETYVDYSS--FRA-R--GLAYGENELVFRSFSKSYGLAGLRLGALFGPS-ELI-AAMK-- 221 (337)
T ss_dssp HHHHHHC------SE-EEEECTTGGGSS--CSS-S--CCCCBTTEEEEEESSSTTCCTTTCCEEEECCH-HHH-HHHH--
T ss_pred HHHHHhC------Cc-EEEECCChhhcc--ccc-c--ccccCCCEEEEeeCchhccCcchheEEEEeCH-HHH-HHHH--
Confidence 9999999 76 666999987542 111 1 1122345677889999885 778889987532 111 1110
Q ss_pred cCccCCCCCCccccCCCchHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecC
Q 010897 304 INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD 382 (498)
Q Consensus 304 ~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~ 382 (498)
..... ++.+ .+.+.++...+.. +.+.+.+++..++++++.+.|++++ +++..+ ..+++.|..++
T Consensus 222 -----~~~~~----~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~~~~ 286 (337)
T 3p1t_A 222 -----RKQWF----CNVG---TLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG-YRVASS--EANFVLVENAA 286 (337)
T ss_dssp -----TTSCT----TCSC---HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCC--SSSEEEEECTT
T ss_pred -----hhcCC----CCCC---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCC--CCeEEEEEcCC
Confidence 00001 1222 2233333333332 3467778888889999999999984 776543 56788777642
Q ss_pred CCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 383 SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 383 ~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
...+.+.|.++|+.+....... ..+++|++++ +.+++++++++|++++
T Consensus 287 -----~~~~~~~l~~~gi~v~~g~~~~---~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 287 -----GERTLRFLRERGIQVKDAGQFG---LHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp -----THHHHHHHHHTTEECEEGGGGT---CCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHCCeEEEECccCC---CCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 3578889999999876543221 1357999987 7889999988887764
No 120
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.93 E-value=2.8e-24 Score=216.19 Aligned_cols=311 Identities=11% Similarity=0.045 Sum_probs=219.2
Q ss_pred CChHHHHHHHHHHhccC---CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~ 143 (498)
++++.+.+++.+.+... ...|.. +... ++++++++++|.+. ..+++|+|+++|+.+++.++.++
T Consensus 39 ~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~----~lr~~la~~~g~~~-----~~i~~t~g~~~al~~~~~~l~~~--- 105 (360)
T 3hdo_A 39 PPSPEVVKAILEELGPDGAALRIYPS-ASSQ----KLREVAGELYGFDP-----SWIIMANGSDEVLNNLIRAFAAE--- 105 (360)
T ss_dssp CCCHHHHHHHHHHHTTTCGGGGSCCC-SSCH----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHHHCCT---
T ss_pred CCCHHHHHHHHHHHhcccchhhcCCC-CchH----HHHHHHHHHhCcCc-----ceEEEcCCHHHHHHHHHHHHhCC---
Confidence 45688999998888764 332321 2223 45566888888654 24999999999999988877432
Q ss_pred HHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHH
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKL 223 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~ 223 (498)
+++|+++.++|..+...++..|++++.++++++ +.+ +++++.+ ++++|++++++||||.+.|+++
T Consensus 106 ----------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~~ 170 (360)
T 3hdo_A 106 ----------GEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD-FRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLEY 170 (360)
T ss_dssp ----------TCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT-SSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHHH
T ss_pred ----------CCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC-CCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHHH
Confidence 468999999999999999999999999999764 555 4444433 3678999999999999999999
Q ss_pred HHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCccccc
Q 010897 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVF 302 (498)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~ 302 (498)
|.++|+++ |+++++|++|+++.. .+... .......+.+..+.+|+++ ++.++|+++.+ ++.. +.+..
T Consensus 171 l~~l~~~~------~~~li~De~~~~~~~---~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~~~~ 238 (360)
T 3hdo_A 171 IDELARRC------AGMLVLDETYAEFAE---SNALE-LVRRHENVVVTRTLSKSYSLAGMRIGLAIAR-PEVI-AALDK 238 (360)
T ss_dssp HHHHHHHB------SSEEEEECTTGGGSS---CCCTH-HHHHCSSEEEEEESTTTTSCTTSCCEEEECC-HHHH-HHHHH
T ss_pred HHHHHHHC------CCEEEEECChHhhCC---cchhH-HhccCCCEEEEecchHhhcCCccceeeEeeC-HHHH-HHHHH
Confidence 99999999 999999999997531 11111 1111234567779999874 67788998863 2221 11111
Q ss_pred ccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecC
Q 010897 303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD 382 (498)
Q Consensus 303 ~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~ 382 (498)
.. .. ++.+.....+...++.. .+.+.+..++..++++++.+.|+++ ++.+..+ ..+++.+.+++
T Consensus 239 ~~-------~~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~--~~~~~~~~~~~ 302 (360)
T 3hdo_A 239 IR-------DH----YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSI-GYDVIPS--QGNYLFATPPD 302 (360)
T ss_dssp HS-------CS----CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCC--SSSEEEEECTT
T ss_pred hC-------CC----CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCC--CccEEEEECCC
Confidence 00 01 12222333333344432 3457788888999999999999998 4887633 56777777642
Q ss_pred CCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 383 SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 383 ~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.+..++.+.|.++|+.+..+.. .....++|++++ +.+++++|+++|+++.+
T Consensus 303 ---~~~~~l~~~l~~~gi~v~~~~~---~~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 303 ---RDGKRVYDGLYARKVLVRHFSD---PLLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp ---CCHHHHHHHHHHTTEECBCCCS---TTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred ---CCHHHHHHHHHHCCEEEEECCC---CCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 5788999999999988765332 123467999987 88999999888887654
No 121
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=1.1e-24 Score=222.50 Aligned_cols=326 Identities=15% Similarity=0.050 Sum_probs=217.2
Q ss_pred HHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHhc
Q 010897 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ 148 (498)
Q Consensus 70 ~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~~~~~~ 148 (498)
+.+.+++.+.+..+. +...+... ++++.+++++|.+. .+++++|++|+.+++.++ .+
T Consensus 44 ~~v~~a~~~~~~~~~--y~~~~~~~----~l~~~la~~~~~~~-------~v~~~~Gt~a~~~~l~~~~~~--------- 101 (399)
T 2oga_A 44 AETDAAIARVLDSGR--YLLGPELE----GFEAEFAAYCETDH-------AVGVNSGMDALQLALRGLGIG--------- 101 (399)
T ss_dssp HHHHHHHHHHHHHTC--CSSSHHHH----HHHHHHHHHTTSSE-------EEEESCHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhcCC--CCCchhHH----HHHHHHHHHHCCCe-------EEEecCHHHHHHHHHHHhCCC---------
Confidence 678888887776532 22223333 45566888888762 788888999999888776 22
Q ss_pred CCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHH
Q 010897 149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 228 (498)
Q Consensus 149 g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la 228 (498)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|+||.+.|+++|.++|
T Consensus 102 ----~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~ 174 (399)
T 2oga_A 102 ----PGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELA 174 (399)
T ss_dssp ----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred ----CcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHH
Confidence 1468999999999999999999999999999865578999999999988887765 578899999999999999
Q ss_pred HHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCC--ccCCCCCCeEEEEEeCCCCCCcccccc-cC
Q 010897 229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDDLPDELVFH-IN 305 (498)
Q Consensus 229 ~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~h--K~l~~p~g~g~~~~~~~~~l~~~~~~~-~~ 305 (498)
+++ |+++++|++|+.+.. + .. . .+. ...|++++|+| |++.++..+|+++.++++......... ..
T Consensus 175 ~~~------~~~li~Dea~~~g~~-~-~~--~-~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g 242 (399)
T 2oga_A 175 DRH------GLHIVEDAAQAHGAR-Y-RG--R-RIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYG 242 (399)
T ss_dssp HHH------TCEECEECTTCTTCE-E-TT--E-ETT-CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTT
T ss_pred HHc------CCEEEEECcccccCc-c-CC--e-ecc-cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcC
Confidence 999 999999999986642 1 11 1 111 11478888874 988663357777765443321110000 00
Q ss_pred cc-CCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccE--EEEEecC
Q 010897 306 YL-GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPL--VAFSLKD 382 (498)
Q Consensus 306 yl-~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~--v~f~~~~ 382 (498)
.. .......+.+++-+ .+.+++++..+ +.+.+..++..++++++.+.|++++++++...+...+. +.|.+..
T Consensus 243 ~~~~~~~~~~g~~~~~~---~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 317 (399)
T 2oga_A 243 SRQKYSHETKGTNSRLD---EMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT 317 (399)
T ss_dssp CSSTTCCCSCCCBCCCC---HHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC
T ss_pred ccccccccccccCCCcC---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC
Confidence 00 00000011111112 22233333222 23455677778889999999999877776533322222 2344432
Q ss_pred CCCCCHHHHHHHHHhcCcEeeeecC-CCCC------C-------------CeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 383 SSAHTVFEISEGLRKFGWIVPAYTM-PANA------E-------------NVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 383 ~~~~~~~~l~~~L~~~G~~v~~~~~-~~~~------~-------------~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.+..++.+.|.++|+.++.... +... . ...++|++++..+|.++++++++.|+++++
T Consensus 318 ---~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 318 ---ERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp ---SSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 2677899999999998865321 1000 0 026899999988999999999999998876
Q ss_pred HH
Q 010897 443 EI 444 (498)
Q Consensus 443 ~l 444 (498)
++
T Consensus 395 ~l 396 (399)
T 2oga_A 395 RV 396 (399)
T ss_dssp SC
T ss_pred Hh
Confidence 43
No 122
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.93 E-value=2.6e-23 Score=212.94 Aligned_cols=332 Identities=15% Similarity=0.071 Sum_probs=219.3
Q ss_pred ChHHHHHHHHHHhccCC-------CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNY-------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~-------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~ 140 (498)
.+|.+.+++.+.+...+ ..+...+...++++.+++++++++|.+. ..+.+++| ++|+.+++.++.++
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-----~~i~~~sG-t~a~~~~~~~~~~~ 110 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKF-----ANVQPNSG-SQANQGVYAALINP 110 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-----EECCCSSH-HHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCC-----cceEeccH-HHHHHHHHHHhcCC
Confidence 46888888887774322 1122234556888888999999999864 12445555 89999988887432
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCchhHHHH---HHHHcCCe--eEEEEecCCccccCHHHHHHHhh-hCCeEEEEeeccCC
Q 010897 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVE--LKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTL 214 (498)
Q Consensus 141 ~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~---~~~~~g~~--~~~v~~~~~~~~~d~~~L~~~i~-~~t~~v~~~~~~t~ 214 (498)
+++|++++++|.++.. .....|.. ++.++++ +++.+|+++|+++++ .+|++|++++++|
T Consensus 111 -------------gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~- 175 (417)
T 3n0l_A 111 -------------GDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-LDGRIDYEKVREIAKKEKPKLIVCGASAY- 175 (417)
T ss_dssp -------------TCEEEEECC----------------CCSEEEEECCC-TTSSCCHHHHHHHHHHHCCSEEEECCSSC-
T ss_pred -------------CCEEEecccccccccchhhhhhhhcceeeeEeccCC-CCCCcCHHHHHHHHHhcCCeEEEECCccc-
Confidence 4789999999976554 33444444 4555555 457899999999998 6899998777774
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCC
Q 010897 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (498)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~ 294 (498)
|.+.|+++|.++|+++ |+++|+|++++.+.. ....... ....+|+++.++||++.++. .|+++.++++
T Consensus 176 -G~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~--~~~~~~~--~~~~~di~~~s~sK~l~g~~-~G~~~~~~~~ 243 (417)
T 3n0l_A 176 -ARVIDFAKFREIADEI------GAYLFADIAHIAGLV--VAGEHPS--PFPYAHVVSSTTHKTLRGPR-GGIIMTNDEE 243 (417)
T ss_dssp -CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSCC--CTTTCSEEEEESSTTTCSCS-CEEEEESCHH
T ss_pred -CccCCHHHHHHHHHHc------CCEEEEECccchhhh--hcccCCC--ccccceEEEeeCccccCCCC-eeEEEECCHH
Confidence 9999999999999999 999999999754322 1111111 12257899999999986555 5888876433
Q ss_pred CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCcc
Q 010897 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (498)
Q Consensus 295 ~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 374 (498)
.. +.+... .+.+ ..++.....+.++.+++.....+++.++.++..++++++.+.|++. ++++.......+
T Consensus 244 ~~-~~~~~~-~~~~-------~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 313 (417)
T 3n0l_A 244 LA-KKINSA-IFPG-------IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNH 313 (417)
T ss_dssp HH-HHHHHH-HTTT-------TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred HH-HHHhhh-hCCc-------ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCce
Confidence 21 111100 0000 0123333455556666666555677889999999999999999995 488876433556
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC---CCCeeEEEEeecC----CCCHHHHHHHHHHHHHHHHH
Q 010897 375 LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN---AENVAVLRVVVRE----DFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~---~~~~~~lRv~v~~----~~t~~~~~~l~~~l~~~l~~ 443 (498)
++.+.+.+ .+.+...+.+.|.++|+.+.....|.. ......+|+++.. ..+.++++++++.|+++++.
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 314 LVLMSFLD-REFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp EEEEECTT-SSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEccc-CCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 77777743 346788999999999998865443322 1223568998643 24679999999999988864
No 123
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.93 E-value=5.9e-25 Score=219.67 Aligned_cols=320 Identities=16% Similarity=0.156 Sum_probs=207.6
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+.++++.+.+++.+..... ..|...+... ++++++++++|.+. .++++||++|+.+++.++.++
T Consensus 13 ~~~p~~~~~~a~~~~~~~~-~~y~~~~~~~----~l~~~la~~~g~~~-------~~~~~~gt~a~~~~~~~~~~~---- 76 (347)
T 1jg8_A 13 VTKPTEEMRKAMAQAEVGD-DVYGEDPTIN----ELERLAAETFGKEA-------ALFVPSGTMGNQVSIMAHTQR---- 76 (347)
T ss_dssp GCCCCHHHHHHHHTCCCCC-GGGTCCHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT----
T ss_pred CCCCCHHHHHHHhcCCCCC-cccCCChHHH----HHHHHHHHHhCCce-------EEEecCcHHHHHHHHHHhcCC----
Confidence 4456677888776553221 1222334433 45566888888753 788899999998887765332
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHH---HHHHHcCCeeEEEEecCCccccCHHHHHHHhhh------CCeEEEEeeccCCc
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWE---KFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLT 215 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~------~t~~v~~~~~~t~t 215 (498)
+++|++++++|.+.. .+++..|++++.+ .+++ +.+|+++|++++++ +|++|++++++|||
T Consensus 77 ---------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~-~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt 145 (347)
T 1jg8_A 77 ---------GDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKN-GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRS 145 (347)
T ss_dssp ---------TCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEET-TEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTT
T ss_pred ---------CCEEEEcCcchhhhccccchhhccCeEEEEe-cCCC-CccCHHHHHHHhccccccccCceEEEEecccccc
Confidence 478999999998654 2567789999888 5443 67999999999975 68999999999999
Q ss_pred -ccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEe
Q 010897 216 -GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291 (498)
Q Consensus 216 -G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~ 291 (498)
|.+.| +++|.++|+++ |+++++|+||..+...+...... .+ ...+|.+.+++||+++++. |++++.
T Consensus 146 ~G~~~~~~~l~~i~~~a~~~------~~~li~D~a~~~~~~~~~~~~~~-~~-~~~~d~~~~s~sK~l~~~~--G~~~~~ 215 (347)
T 1jg8_A 146 GGRVVPLENIKEICTIAKEH------GINVHIDGARIFNASIASGVPVK-EY-AGYADSVMFCLSKGLCAPV--GSVVVG 215 (347)
T ss_dssp TSBCCCHHHHHHHHHHHHHH------TCEEEEEETTHHHHHHHHCCCHH-HH-HHTCSEEEEESSSTTCCSS--CEEEEE
T ss_pred CCccCcHHHHHHHHHHHHHC------CCEEEeehhhhhcchhhcCCChH-Hh-cccccEEEEecccccCCCc--eEEEEc
Confidence 99865 56888999999 99999999975321111111100 11 0246778889999987764 444444
Q ss_pred CCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC
Q 010897 292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV 371 (498)
Q Consensus 292 ~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 371 (498)
+++.+....... .+.++. ....+........++..+ .+.+++..++++++.+.|+++ ++++...++
T Consensus 216 ~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 281 (347)
T 1jg8_A 216 DRDFIERARKAR-KMLGGG-------MRQAGVLAAAGIIALTKM-----VDRLKEDHENARFLALKLKEI-GYSVNPEDV 281 (347)
T ss_dssp CHHHHHHHHHHH-HHHTCC-------CSSTHHHHHHHHHHHHHS-----STTHHHHHHHHHHHHHHHHHH-TCBCCGGGC
T ss_pred CHHHHHHHHHHH-HHcCCc-------hhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhc-CceeccCCC
Confidence 433221111111 111111 111112222222333322 122344456778888888887 476532223
Q ss_pred CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 372 GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 372 ~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
..+++.++++. .+.+..++.++|.++|+.+.... ..++|++++...+.++++++++.|+++++.
T Consensus 282 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~-------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 282 KTNMVILRTDN-LKVNAHGFIEALRNSGVLANAVS-------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp CSSEEEEECTT-SSSCHHHHHHHHHHHTEECEEEE-------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEccc-ccCCHHHHHHHHHHCCCEEecCC-------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 56788888852 13578899999999998875431 246999998778999999999999988764
No 124
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.93 E-value=2.4e-24 Score=221.24 Aligned_cols=346 Identities=11% Similarity=0.039 Sum_probs=237.5
Q ss_pred CcccccccC-CChHHHHHHHHHHhccCC--CCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHH
Q 010897 58 LNLASFVTT-WMEPECDKLVMASINKNY--VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134 (498)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~l~~~~~~n~--~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~ 134 (498)
++|....+. ++++.+.+++.+.+.... ..|....+..++++++.+++.+.+|.+.+.. ..+++|+|+++|+.+++
T Consensus 31 i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~--~~i~~~~g~~~a~~~~~ 108 (422)
T 3fvs_A 31 VNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPL--RNVLVTVGGYGALFTAF 108 (422)
T ss_dssp EECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHH--HHEEEESHHHHHHHHHH
T ss_pred eEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--CcEEEECChHHHHHHHH
Confidence 444444443 356788898888876633 3344445668899999999999999864320 24899999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-----------CccccCHHHHHHHhhhCC
Q 010897 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-----------GYYVMNPVKAVELVDENT 203 (498)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-----------~~~~~d~~~L~~~i~~~t 203 (498)
.++.++ +++|+++.++|..+...++..|++++.+++++ +++.+|+++|++++++++
T Consensus 109 ~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~ 175 (422)
T 3fvs_A 109 QALVDE-------------GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRT 175 (422)
T ss_dssp HHHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTE
T ss_pred HHHcCC-------------CCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCc
Confidence 877432 46899999999999999999999999999875 346899999999999899
Q ss_pred eEEEEeeccCCccccc---CHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-C---CCCeeEEEEcCC
Q 010897 204 ICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-R---LPLVKSINVSGH 276 (498)
Q Consensus 204 ~~v~~~~~~t~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~---~~~~dsi~~s~h 276 (498)
++|++++++||||.+. ++++|.++|+++ |+++++|++|+++.. .......+ . ....+.+..+.+
T Consensus 176 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~S~s 246 (422)
T 3fvs_A 176 KALVLNTPNNPLGKVFSREELELVASLCQQH------DVVCITDEVYQWMVY---DGHQHISIASLPGMWERTLTIGSAG 246 (422)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC---TTCCCCCGGGSTTTGGGEEEEEEHH
T ss_pred eEEEECCCCCCCCcCCCHHHHHHHHHHHHHc------CcEEEEEccchhhcc---CCCCCCChhhcccccCcEEEEecch
Confidence 9999999999999997 589999999999 999999999998652 11111111 1 113556777889
Q ss_pred ccCC-CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHH------hcHHHHHHHHHHHHH
Q 010897 277 KYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR------LGFEGYKNIMENCMG 349 (498)
Q Consensus 277 K~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~------lg~~g~~~~~~~~~~ 349 (498)
|.++ ++.++|+++.+++ .+ ..+.. +... .. ++-+.....+...++.. ...+.+++..++..+
T Consensus 247 K~~g~~G~r~G~~~~~~~-~~-~~~~~---~~~~--~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (422)
T 3fvs_A 247 KTFSATGWKVGWVLGPDH-IM-KHLRT---VHQN--SV----FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQR 315 (422)
T ss_dssp HHHTCGGGCCEEEECCHH-HH-HHHHH---HHHT--TT----CCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHH
T ss_pred hccCCccceEEEEEeCHH-HH-HHHHH---HHhh--cc----CCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHH
Confidence 9875 6678999985432 11 11110 0000 01 12222233333333332 123456778888889
Q ss_pred HHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCC-CCC----------HHHHHHHHH-hcCcEeeeecCCC----CCCC
Q 010897 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS-AHT----------VFEISEGLR-KFGWIVPAYTMPA----NAEN 413 (498)
Q Consensus 350 ~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~-~~~----------~~~l~~~L~-~~G~~v~~~~~~~----~~~~ 413 (498)
+++++.+.|++++ +++..+. ...++.+.++... ..+ ..+++++|. ++|+.+....... ...+
T Consensus 316 ~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~ 393 (422)
T 3fvs_A 316 CRDHMIRSLQSVG-LKPIIPQ-GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHF 393 (422)
T ss_dssp HHHHHHHHHHTTT-CEEEBCS-BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTS
T ss_pred HHHHHHHHHHHcC-CeecCCC-eeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCC
Confidence 9999999999985 8876553 4566666663200 000 457777754 5798775422111 0134
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 414 VAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 414 ~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.+++|+++.. +.++++++++.|+++++
T Consensus 394 ~~~iRis~~~--~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 394 DHYIRFCFVK--DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp CSEEEEECCC--CHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 6789999865 88999988888888764
No 125
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.92 E-value=3.7e-23 Score=214.27 Aligned_cols=356 Identities=13% Similarity=0.074 Sum_probs=234.5
Q ss_pred HHHHHHHHHhhh-ccCCCCCcccccccCC-ChHHHHHHHHHHhcc-----CCCCCcCCcchHHHHHHHHHHHHHHcCCCC
Q 010897 40 EAAYQVINDELM-LDGNPRLNLASFVTTW-MEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTPV 112 (498)
Q Consensus 40 ~~~~~~~~~~~~-~~~~p~~~~~~~~~~~-~~~~~~~~l~~~~~~-----n~~~~~~~~~~~~le~~~~~~la~l~g~~~ 112 (498)
+++.+....... .++...++|.+..+.. ++|.+.+++.+++.. ....|....+..++++++.+++. .|++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~ 130 (449)
T 3qgu_A 53 PEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGR 130 (449)
T ss_dssp HHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTC
T ss_pred HHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCC
Confidence 444444444333 2345556666655443 567888888887763 22334444566778888777765 45543
Q ss_pred CCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCe----------eEEEE
Q 010897 113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE----------LKEVK 182 (498)
Q Consensus 113 ~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~----------~~~v~ 182 (498)
+. ..+++|+|+++++.++ .++.++ ++.|+++.++|.++...++..|.+ ++.++
T Consensus 131 ~~---~~i~~t~G~~~al~~~-~~l~~~-------------gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 193 (449)
T 3qgu_A 131 AA---DEIFISDGSKCDIARI-QMMFGS-------------KPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMV 193 (449)
T ss_dssp CG---GGEEEESCHHHHHHHH-HHHHCS-------------SSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEE
T ss_pred CH---HHEEEccCHHHHHHHH-HHHhCC-------------CCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEe
Confidence 22 3589999999999876 554321 468999999999999999999998 99999
Q ss_pred ecCC-ccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCC
Q 010897 183 LEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD 258 (498)
Q Consensus 183 ~~~~-~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~ 258 (498)
++++ ++..|++++ +++++|++++++||||.+.+ +++|.++|+++ |+++++|++|+++.. ...
T Consensus 194 ~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~------~~~li~Dea~~~~~~---~~~ 259 (449)
T 3qgu_A 194 CNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN------GSILVYDAAYALYIS---NPD 259 (449)
T ss_dssp CCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCC---CTT
T ss_pred cccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchHhhhc---CCC
Confidence 8743 355554332 57899999999999999965 77888889999 999999999998753 111
Q ss_pred Ccccc-C---CCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCc-ccccccCccCCCCCCccccCCCchHHHHHHHHHH
Q 010897 259 LEWDF-R---LPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPD-ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF 332 (498)
Q Consensus 259 ~~~~~-~---~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~-~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l 332 (498)
....+ . ....+.+..+.+|+++ ++.++|+++.+++ .+.. .......+... ...+ ++ ....+++.+++
T Consensus 260 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~--~~~~--~~--~~~~~~~~a~~ 332 (449)
T 3qgu_A 260 CPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKA-LKYANGEPVHADWNRV--MTTC--FN--GASNIVQAGGL 332 (449)
T ss_dssp SCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTT-CBCTTSCBHHHHHHHH--HHHS--CC--CCCHHHHHHHH
T ss_pred CCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHH-HHhhhhhhHHHHHHHH--hhcc--cC--CCCHHHHHHHH
Confidence 11111 1 1346788889999885 7788999986543 2211 00000000000 0000 00 12334455555
Q ss_pred HHhcH---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCC
Q 010897 333 IRLGF---EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMP 408 (498)
Q Consensus 333 ~~lg~---~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~ 408 (498)
..+.. +.+++..++..+++++|.+.|++++ +++..+. ...++.+.++ +.+..+++++|.++ |+.+......
T Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~l~~~~gI~v~pg~~f 407 (449)
T 3qgu_A 333 ACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-FSVYGGD-DAPYIWVGFP---GKPSWDVFAEILERCNIVTTPGSGY 407 (449)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEESS-SSSEEEEECT---TSCHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCC-CeeEEEEECC---CCCHHHHHHHHHHHCCEEEecchHh
Confidence 55544 4467788888899999999999985 8776553 4677777774 46788999888876 9887543221
Q ss_pred CCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 409 ANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 409 ~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
. ..+..++|+++.. +.++++++++.|+++++.
T Consensus 408 ~-~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 408 G-PAGEGFVRASAFG--SRENILEAVRRFKEAYGK 439 (449)
T ss_dssp C-GGGTTEEEEECCS--CHHHHHHHHHHHHHHHC-
T ss_pred C-CCCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 1 2345789999643 888888888888777643
No 126
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.92 E-value=6.5e-24 Score=218.59 Aligned_cols=310 Identities=11% Similarity=0.014 Sum_probs=214.1
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH
Q 010897 92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA 171 (498)
Q Consensus 92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~ 171 (498)
+..++++.+.+++.+.+|.+.+. +...+++|+|+++++.+++.++.++ +++|+++.++|..+...+
T Consensus 84 g~~~lr~~la~~~~~~~g~~~~~-~~~~i~~~~G~~~ai~~~~~~~~~~-------------gd~Vl~~~p~y~~~~~~~ 149 (428)
T 1iay_A 84 GLPEFRKAIAKFMEKTRGGRVRF-DPERVVMAGGATGANETIIFCLADP-------------GDAFLVPSPYYPAFNRDL 149 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCC-CTTSCEEEEHHHHHHHHHHHHHCCT-------------TCEEEEESSCCTTHHHHT
T ss_pred CcHHHHHHHHHHHHHhcCCCCCC-ChhhEEEccChHHHHHHHHHHhCCC-------------CCeEEEccCCCcchHHHH
Confidence 56788889888888887754110 0124899999999999888887432 468999999999887744
Q ss_pred -HHcCCeeEEEEecC-CccccCHHHHHHHhhh------CCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCce
Q 010897 172 -RYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTP 240 (498)
Q Consensus 172 -~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~------~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~ 240 (498)
...|++++.+|+++ ++|.+|+++|++++++ ++++|++++|+||||.+.| +++|.++|+++ |++
T Consensus 150 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~~ 223 (428)
T 1iay_A 150 RWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH------NIH 223 (428)
T ss_dssp TTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT------TCE
T ss_pred HHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHC------CeE
Confidence 46899999999864 3478999999999874 6888999999999999999 99999999999 999
Q ss_pred EEEecCcccccccccCCCC-c-cccCCC------Cee--EEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccccCccCC
Q 010897 241 IHVDAASGGFIAPFLYPDL-E-WDFRLP------LVK--SINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGS 309 (498)
Q Consensus 241 l~vD~A~~g~~~~~~~~~~-~-~~~~~~------~~d--si~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~ 309 (498)
+++|+||+++.. ..... . ..+... ..| .+..+.||+++ ++.++|+++..+++.. ..+.....
T Consensus 224 li~Dea~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~-~~~~~~~~---- 296 (428)
T 1iay_A 224 LVCDEIYAATVF--DTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVV-NCARKMSS---- 296 (428)
T ss_dssp EEEECTTGGGCC--SSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHH-HHHHHHHT----
T ss_pred EEEecccccccc--CCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHH-HHHHHHHh----
Confidence 999999998642 11111 0 011100 134 67789999875 6667899987543322 11111000
Q ss_pred CCCCccccCCCchHHHHHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCC
Q 010897 310 DQPTFTLNFSKGSSQIIAQYYQFIRLGF-----EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS 384 (498)
Q Consensus 310 ~~~~~~l~~sr~~~~~~a~~~~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~ 384 (498)
. ++- ..+++.++...+.. +.+++..++..+++++|.+.|++++ ++++.+. ..+++.++++...
T Consensus 297 ---~----~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~ 364 (428)
T 1iay_A 297 ---F----GLV---STQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG-IKCLKNN-AGLFCWMDLRPLL 364 (428)
T ss_dssp ---T----SCC---CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCS-SSSEEEEECGGGC
T ss_pred ---c----ccC---CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCC-eeEEEEEechhhc
Confidence 0 111 22334444444432 2456677788889999999999984 7765432 4567778875310
Q ss_pred ---C-CCHHHHHHHHHhc-CcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 385 ---A-HTVFEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 385 ---~-~~~~~l~~~L~~~-G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
. .+..++.++|.++ |+.+....... ..+..++|++++ ..+.++++++++.|+++++
T Consensus 365 ~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~-~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 365 RESTFDSEMSLWRVIINDVKLNVSPGSSFE-CQEPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp SSSSHHHHHHHHHHHHHTSCEECEEGGGGT-CSSSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 0 1345789999876 98876433211 122467999997 5799999999999988875
No 127
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.92 E-value=2.4e-23 Score=211.70 Aligned_cols=334 Identities=12% Similarity=0.036 Sum_probs=216.0
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
..++++.+++.+.+....+ ...+... ++++.+++++|.+. .+++++|++|+.+++.+++...
T Consensus 12 ~~~~~~~~a~~~~~~~~~~--~~~~~~~----~l~~~la~~~~~~~-------~i~~~sGt~a~~~al~~~~~~~----- 73 (390)
T 3b8x_A 12 TWDDLEYKAIQSVLDSKMF--TMGEYVK----QYETQFAKTFGSKY-------AVMVSSGSTANLLMIAALFFTK----- 73 (390)
T ss_dssp CCCHHHHHHHHHHHHHTCC--SSCHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTSSS-----
T ss_pred CCCHHHHHHHHHHHHcCCC--CCChHHH----HHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHHhhh-----
Confidence 4467777888887765432 2234444 44555888888763 7888999999999888762100
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHH
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 226 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~ 226 (498)
..+.. .+++|+++.++|.++..+++..|++++.++++++++.+|+++|+++++++|++|+++ +++|...|+++|.+
T Consensus 74 ~~~~~-~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~g~~~~~~~i~~ 149 (390)
T 3b8x_A 74 KPRLK-KGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTV---NLLGNPNNFDEINK 149 (390)
T ss_dssp SCSCC-TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEE---CGGGCCCCHHHHHH
T ss_pred hcCCC-CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEE---CCccChhhHHHHHH
Confidence 00010 246899999999999999999999999999987568899999999999889888876 36788999999999
Q ss_pred HHHHhhcccCCCceEEEecCcccccccccCCCCccccC-CCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccc-cc-
Q 010897 227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV-FH- 303 (498)
Q Consensus 227 la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~-~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~-~~- 303 (498)
+|+++ |+++|+|+||+.+..+ .. . .++ ...+.+++..+.|.+.++.| |+++.++++.. +.+. ..
T Consensus 150 l~~~~------~~~li~D~a~~~g~~~--~~--~-~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~-~~~~~~~~ 216 (390)
T 3b8x_A 150 IIGGR------DIILLEDNCESMGATF--NN--K-CAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIY-HILLCIRA 216 (390)
T ss_dssp HHTTS------CCEEEEECTTCTTCEE--TT--E-ETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHH-HHHHHHTB
T ss_pred HHHHc------CCEEEEECcCcccCEE--CC--c-ccccccceEEEEccCCCCCccCCc-eEEEeCCHHHH-HHHHHHHh
Confidence 99999 9999999999855431 11 1 111 12234444333343445556 88876653221 1100 00
Q ss_pred cCccCC-----------------CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 010897 304 INYLGS-----------------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366 (498)
Q Consensus 304 ~~yl~~-----------------~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 366 (498)
..+... ....+...|.+.....+..++++..+ +.+.+..++..++++++.+.|++++++++
T Consensus 217 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 294 (390)
T 3b8x_A 217 HGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL--KKLPRFISVRRKNAEYFLDKFKDHPYLDV 294 (390)
T ss_dssp TTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCSSEEE
T ss_pred cCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 000000 00000101211112223344444333 55678888999999999999999988887
Q ss_pred eeCCCCccE--EEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCC---C---CC--C--------------eeEEEEeec
Q 010897 367 LSKDVGVPL--VAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA---N---AE--N--------------VAVLRVVVR 422 (498)
Q Consensus 367 ~~~~~~~~~--v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~---~---~~--~--------------~~~lRv~v~ 422 (498)
..++...++ +.+.+++..+.+..++.+.|.++|+.++.+..++ . .. + ...+|++++
T Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 374 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNH 374 (390)
T ss_dssp CCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECC
T ss_pred CCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCC
Confidence 654222333 4445643224578899999999999876532111 0 00 0 147999999
Q ss_pred CCCCHHHHHHHHHHH
Q 010897 423 EDFSRSLVERLISHI 437 (498)
Q Consensus 423 ~~~t~~~~~~l~~~l 437 (498)
..+|.+|++++++.|
T Consensus 375 ~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 375 QIELFDEIDYLREVL 389 (390)
T ss_dssp SSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999888765
No 128
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.92 E-value=7.3e-24 Score=214.65 Aligned_cols=330 Identities=11% Similarity=0.071 Sum_probs=218.2
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHH-HHHcC-CCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMI-AHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQ 143 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~l-a~l~g-~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~ 143 (498)
++++++.+++.+++..+.+.+ ..|...++|++ + ++++| .+ ..+++++|++|+.+++.++ .++
T Consensus 13 ~~~~~i~~a~~~~~~~~~~~~-~~~~~~~l~~~----~~a~~~g~~~-------~~v~~~sgt~al~~al~~l~~~~--- 77 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHIYTN-YGPINQRFEQT----IMSGFFQNRG-------AVTTVANATLGLMAAIQLKKRKK--- 77 (377)
T ss_dssp CCGGGGHHHHHHHHHHTCCSS-SCHHHHHHHHH----HHHHTSTTCS-------EEEEESCHHHHHHHHHHHHSCTT---
T ss_pred CCcHHHHHHHHHHHHcCCccc-CCHHHHHHHHH----HHHHHhCCCC-------eEEEeCCHHHHHHHHHHHcCCCC---
Confidence 345667788888887765431 23555555554 7 88898 33 2899999999999988776 222
Q ss_pred HHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHh-hhC--CeEEEEeeccCCcccccC
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV-DEN--TICVAAILGSTLTGEFED 220 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i-~~~--t~~v~~~~~~t~tG~~~~ 220 (498)
+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++ +++ |++|+ +++++|...|
T Consensus 78 ----------Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~ 144 (377)
T 3ju7_A 78 ----------GKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN 144 (377)
T ss_dssp ----------CCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC
T ss_pred ----------cCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC
Confidence 5799999999999999999999999999998666899999999998 666 88775 6788999999
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~ 300 (498)
+++|.++|+ + |++||+|+||+.+.. ... ....-....++++++++||++.+ ...|++++++++.. ..+
T Consensus 145 ~~~i~~la~-~------~~~vi~D~a~a~g~~--~~~-~~~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~-~~~ 212 (377)
T 3ju7_A 145 LEEYEELEK-K------GVPVVVDAAPGFGLM--NGG-MHYGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNEEDI-QRI 212 (377)
T ss_dssp CHHHHHHHH-T------TCCBEEECTTCTTCE--ETT-EETTTTCSSEEEEECBTTSSSCC-BSCEEEEESCHHHH-HHH
T ss_pred HHHHHHHHh-c------CCEEEEECCCccCCe--ECC-EeccCCCCcEEEEECCCCCcCCC-CCcEEEEECCHHHH-HHH
Confidence 999999999 9 999999999986542 111 00000113477788889999976 35677776654322 111
Q ss_pred ccccCccCC---CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--EeeCCC---C
Q 010897 301 VFHINYLGS---DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE--ILSKDV---G 372 (498)
Q Consensus 301 ~~~~~yl~~---~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~--~~~~~~---~ 372 (498)
..-..+-.. .....++++.- ..+.++.++.. .+.+.++.++..++++++.+.|++++++. +..... .
T Consensus 213 ~~~~~~g~~~~~~~~~~g~~~~~---~~~~aa~~~~~--l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 287 (377)
T 3ju7_A 213 KRMGNFGFDTNRECTMMGFNCKM---SEYAAAIGIAT--MKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVI 287 (377)
T ss_dssp HHHTBTTBCTTSCBCSSCCBCCC---CHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBC
T ss_pred HHHHhcCCCCCCceeeccccCCC---CHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcce
Confidence 110010000 00111111111 22222333322 35567788889999999999999887532 111111 1
Q ss_pred ccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCC-CC-----------------CCeeEEEEeecCCCCHHHHHHHH
Q 010897 373 VPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA-NA-----------------ENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 373 ~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~-~~-----------------~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
..++.+.+++ ..+..++.+.|.++|+.++.+..++ +. .....+|+.++...|.+++++++
T Consensus 288 ~~~~~~~~~~--~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~ 365 (377)
T 3ju7_A 288 QQFMPILCPE--EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIV 365 (377)
T ss_dssp CSSEEEECCT--TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred EEEEEEEeCC--hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHH
Confidence 1244556532 3457899999999998876543211 10 01368999999999999999998
Q ss_pred HHHHHHHHH
Q 010897 435 SHIEEVLKE 443 (498)
Q Consensus 435 ~~l~~~l~~ 443 (498)
+.|++++..
T Consensus 366 ~~l~~~~~~ 374 (377)
T 3ju7_A 366 ICLGQKVVS 374 (377)
T ss_dssp HHHTC----
T ss_pred HHHHHHHhc
Confidence 888877654
No 129
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.92 E-value=7.1e-24 Score=212.28 Aligned_cols=321 Identities=14% Similarity=0.069 Sum_probs=218.4
Q ss_pred CCCCccccccc-CCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHH
Q 010897 55 NPRLNLASFVT-TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (498)
Q Consensus 55 ~p~~~~~~~~~-~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la 133 (498)
+..+++.+..+ .++++.+.+++.+.+..... |..... . ++++++++++|.+.+ .+++|+|+++++.++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~-y~~~~~-~----~lr~~la~~~~~~~~-----~i~~t~g~~~al~~~ 83 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIRH-YPEPDA-G----TLRQMLAKRNSVDNN-----AILVTNGPTAAFYQI 83 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGGGGS-CCCTTC-H----HHHHHHHHHTTCCGG-----GEEEESHHHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhHHhc-CCCCcH-H----HHHHHHHHHhCcCHH-----HEEEcCCHHHHHHHH
Confidence 33344444332 24568888888887743222 222112 2 566678999987642 499999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEe-cCCccccCHHHHHHHhhhCCeEEEEeecc
Q 010897 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDENTICVAAILGS 212 (498)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~L~~~i~~~t~~v~~~~~~ 212 (498)
+.++. +++|+++.++|..+...++..|++++.+++ +++ ..+++ +++++|++++++
T Consensus 84 ~~~l~---------------gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~--------~~~~~v~i~~p~ 139 (350)
T 3fkd_A 84 AQAFR---------------GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI-GEADF--------SNMDFCWLCNPN 139 (350)
T ss_dssp HHHTT---------------TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG-GGSCC--------TTCSEEEEESSC
T ss_pred HHHHC---------------CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc-ccCcc--------CCCCEEEEeCCC
Confidence 87763 268999999999999999999999999999 552 33554 578999999999
Q ss_pred CCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEe
Q 010897 213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWR 291 (498)
Q Consensus 213 t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~ 291 (498)
||||.+.|+++|.++++.++ +.++++|++|+.+.. ........+.....+.+..|.+|+++ ++.++|+++.
T Consensus 140 nptG~~~~~~~l~~l~~~~~-----~~~li~Dea~~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~- 211 (350)
T 3fkd_A 140 NPDGRLLQRTEILRLLNDHP-----DTTFVLDQSYVSFTT--EEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVA- 211 (350)
T ss_dssp TTTCCCCCHHHHHHHHHHCT-----TSEEEEECTTTTSCS--SCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEEC-
T ss_pred CCcCCCCCHHHHHHHHHhCC-----CCEEEEECchhhhcc--CcchhhHHhhcCCCEEEEecCchhccCcchheEeEEe-
Confidence 99999999999999999983 379999999987652 11111122233345577789999876 6788999986
Q ss_pred CCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC
Q 010897 292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG-YKNIMENCMGNARALREGLEKTGRFEILSKD 370 (498)
Q Consensus 292 ~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g-~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 370 (498)
+++.. +.+. ..... ++. ..+.++++...+.... +.+.+++..++++++.+.|++++++++..+
T Consensus 212 ~~~~~-~~~~-------~~~~~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~- 275 (350)
T 3fkd_A 212 NKDFM-KRVA-------AFSTP----WAV---NALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPS- 275 (350)
T ss_dssp CHHHH-HHHH-------TTCCT----TCS---CHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECCC-
T ss_pred CHHHH-HHHH-------HhCCC----CCC---CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECCC-
Confidence 33221 1111 00011 122 2233444443332222 444455555889999999999987887643
Q ss_pred CCccEEEEEecCCCCCCHHHHHHHHHh-cCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 371 VGVPLVAFSLKDSSAHTVFEISEGLRK-FGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 371 ~~~~~v~f~~~~~~~~~~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
..+++.++++. . +..++.++|.+ +|+.+....... ..+..++|++++ +.+++++|+++|+++++
T Consensus 276 -~~~~~~~~~~~--~-~~~~l~~~L~~~~gi~v~~g~~f~-~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 276 -GTTFFLLRLKK--G-TAAELKKYMLEEYNMLIRDASNFR-GLDESYVRITTQ---RPAQNQLFIKALETFLE 340 (350)
T ss_dssp -SSSEEEEEESS--S-CHHHHHHHHHHTTCEECEECTTST-TCCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred -CCcEEEEECCC--C-CHHHHHHHHHHHCCEEEEeCccCC-CCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 56777788854 2 77899999999 998876433211 234578999987 77888888888877764
No 130
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.92 E-value=3.7e-24 Score=220.62 Aligned_cols=323 Identities=11% Similarity=0.028 Sum_probs=220.6
Q ss_pred HHHHHHHhcc-CCCCCcCCcchHHHHHHHHHHHHHHc-CCCCCCCCCcc---eeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 73 DKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLF-NTPVADDKTAV---GVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 73 ~~~l~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~---~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+++.+.+.. ....|....+..++++.+.+++.+.. +.+. .. +++|+|+++|+.+++.++.++
T Consensus 69 ~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-----~~~~~i~~t~g~~~al~~~~~~l~~~------- 136 (430)
T 2x5f_A 69 LDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSI-----DNMSRPIVTNALTHGLSLVGDLFVNQ------- 136 (430)
T ss_dssp HHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCG-----GGBCCCEEESHHHHHHHHHHHHHCCT-------
T ss_pred HHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCC-----CccceEEEcCCchHHHHHHHHHHhCC-------
Confidence 4544444443 23334444456778888777776653 3322 24 899999999999998887432
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHH-cCCeeEEEEecCCccccCHHHHHHHhhh---CCeEEEEeeccCCcccccC---
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARY-FEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFED--- 220 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~-~g~~~~~v~~~~~~~~~d~~~L~~~i~~---~t~~v~~~~~~t~tG~~~~--- 220 (498)
+++|+++.++|..+...++. .|++++.++++++++.+|+++|++++++ ++++|++++|+||||.+.|
T Consensus 137 ------gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~ 210 (430)
T 2x5f_A 137 ------DDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKE 210 (430)
T ss_dssp ------TCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHH
T ss_pred ------CCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHH
Confidence 46899999999999999999 9999999998763378999999999987 7899999999999999988
Q ss_pred HHHHHHHHHH-----hhcccCCCceEEEecCcccccccccCCCC-c-c-cc-CCCCe---eEEEEcCCccCC-CCCCeEE
Q 010897 221 VKLLHDLLTK-----KNEETGWDTPIHVDAASGGFIAPFLYPDL-E-W-DF-RLPLV---KSINVSGHKYGL-VYAGVGW 287 (498)
Q Consensus 221 l~~I~~la~~-----~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~-~-~~-~~~~~---dsi~~s~hK~l~-~p~g~g~ 287 (498)
+++|.++|++ + |+++++|++|+++.. ..... . . .+ ..... +.+..+.+|+++ ++.++|+
T Consensus 211 l~~i~~~~~~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~ 282 (430)
T 2x5f_A 211 VTTIVEAIKALANKGT------KVIAVVDDAYYGLFY--EDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGF 282 (430)
T ss_dssp HHHHHHHHHHHHHTTC------EEEEEEECTTTTCBC--SSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEE
T ss_pred HHHHHHHHHhhhhccC------CEEEEEehhcccccC--CcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEE
Confidence 8899999999 8 999999999998752 11100 1 1 22 21223 566789999885 5566899
Q ss_pred EEEe--CCCCCCcccccccCc-cCCCCCCccccCCCchHHHHHHHHHHHHhc-H----HHHHHHHHHHHHHHHHHHHHHh
Q 010897 288 VVWR--TKDDLPDELVFHINY-LGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-F----EGYKNIMENCMGNARALREGLE 359 (498)
Q Consensus 288 ~~~~--~~~~l~~~~~~~~~y-l~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-~----~g~~~~~~~~~~~a~~l~~~L~ 359 (498)
++.. +++.. +.+...... ... ..++. ..+.++++...+. . +.+++..++..++++++.+.|+
T Consensus 283 ~~~~~~~~~~~-~~l~~~~~~~~~~------~~~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 352 (430)
T 2x5f_A 283 MTFGTSDQTTK-EVLEAKVKGLIRS------NISSG---PLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVY 352 (430)
T ss_dssp EEEBCCCHHHH-HHHHHHHHHHHHT------TTSSC---CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCHHHH-HHHHHHHhhhhhc------ccCCC---ChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9972 22221 111100000 000 00122 2223333333332 1 2233367777788999999998
Q ss_pred ----cCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHh-cCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHH
Q 010897 360 ----KTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK-FGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 360 ----~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
+.+ +++..+. ...++.+.++ +.+..++.++|.+ +|+.+... +..++|++++. .+.+++++++
T Consensus 353 ~~~~~~g-~~~~~~~-~g~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g-------~~~~iRis~~~-~~~e~i~~~~ 419 (430)
T 2x5f_A 353 ADQYHSH-WQAYDFN-SGYFMAIKVH---DVDPEALRKHLIDKYSIGVIAL-------NATDIRIAFSC-VEKDDIPHVF 419 (430)
T ss_dssp CGGGTTT-EEECCCC-BSSEEEEEES---SSCHHHHHHHHHHHHCEECEEC-------SSSEEEEEGGG-SCGGGHHHHH
T ss_pred hhCCCCC-ceeeCCC-ceEEEEeCCC---CCCHHHHHHHHHHhCCEEEecC-------CCCeEEEEEec-CCHHHHHHHH
Confidence 554 8776442 3345777875 3678899999998 99887542 24579999975 4889999999
Q ss_pred HHHHHHHHHH
Q 010897 435 SHIEEVLKEI 444 (498)
Q Consensus 435 ~~l~~~l~~l 444 (498)
+.|+++++++
T Consensus 420 ~~l~~~l~~~ 429 (430)
T 2x5f_A 420 DSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 131
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.92 E-value=5e-23 Score=211.26 Aligned_cols=334 Identities=12% Similarity=0.083 Sum_probs=215.0
Q ss_pred ChHHHHHHHHHHhccCC-CCCc---CCc---chHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNY-VDMD---EYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~-~~~~---~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~ 140 (498)
.+|.+.+++.+.+...+ ..+. .++ ....+++.+++++++++|.+. ..++++||++|+.+++.++.++
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~v~~~~Gs~a~~~al~~~~~~ 117 (425)
T 3ecd_A 44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH------ANVQPHSGAQANGAVMLALAKP 117 (425)
T ss_dssp CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCCT
T ss_pred CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCC------ceeecCchHHHHHHHHHHccCC
Confidence 36888898888774322 1111 111 122455556688999999864 1356889999998888776332
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCchhH---HHHHHHHcCCeeE--EEEecCCccccCHHHHHHHhh-hCCeEEEEeeccCC
Q 010897 141 WQQKRKEQGKPYDKPNIVTGANVQVC---WEKFARYFEVELK--EVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTL 214 (498)
Q Consensus 141 ~~~~~~~~g~~~~~~~Iv~s~~~h~~---~~~~~~~~g~~~~--~v~~~~~~~~~d~~~L~~~i~-~~t~~v~~~~~~t~ 214 (498)
+++|++++++|.+ ........|..++ .++++++++.+|+++|++++. .++++|+++.++|
T Consensus 118 -------------gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~- 183 (425)
T 3ecd_A 118 -------------GDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY- 183 (425)
T ss_dssp -------------TCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC-
T ss_pred -------------CCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC-
Confidence 4689999999987 2222234566444 555554558899999999997 5899998887766
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCC
Q 010897 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (498)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~ 294 (498)
|...++++|.++|+++ |+++|+|++|+.+.. ........ .+.+|+++.++||++.++ .+|+++.+++.
T Consensus 184 -~~~~~l~~i~~l~~~~------~~~li~De~~~~g~~--~~~~~~~~--~~~~di~~~s~sK~l~g~-~~g~~~~~~~~ 251 (425)
T 3ecd_A 184 -PRKLDFARFRAIADSV------GAKLMVDMAHIAGVI--AAGRHANP--VEHAHVVTSTTHKTLRGP-RGGFVLTNDEE 251 (425)
T ss_dssp -CSCCCHHHHHHHHHHH------TCEEEEECGGGHHHH--HTTSSCCG--GGTCSEEEEESSGGGCCC-SCEEEEESCHH
T ss_pred -CCcCCHHHHHHHHHHc------CCEEEEECcChHhhh--hcccccCc--hhcCcEEEecCCcccCCC-CcEEEEeCCHH
Confidence 6789999999999999 999999999754321 11111111 123789999999998555 46888866432
Q ss_pred CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCcc
Q 010897 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (498)
Q Consensus 295 ~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 374 (498)
.. ..+.. .... +..++.....+.++.+++.....+++.+..++..++++++.+.|++.+ +++..+....+
T Consensus 252 ~~-~~~~~---~~~~-----~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 321 (425)
T 3ecd_A 252 IA-KKINS---AVFP-----GLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTGGTDNH 321 (425)
T ss_dssp HH-HHHHH---HHC----------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS
T ss_pred HH-HHHHh---hhCc-----cccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccCCCCce
Confidence 21 11110 0000 011233334555566666655557788899999999999999999975 88876433567
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC---CCCeeEEEEee----cCCCCHHHHHHHHHHHHHHHHHH
Q 010897 375 LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN---AENVAVLRVVV----REDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~---~~~~~~lRv~v----~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
++.+.+++ .+.+...+.+.|.++|+.+.....|.. ......+|+++ ....+.++++++++.|+++++..
T Consensus 322 ~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 322 LLLVDLRP-KGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EEEEECGG-GTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-CCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 77777753 235678899999999998864432321 12245799984 34445899999999999998776
No 132
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.92 E-value=1.8e-23 Score=213.84 Aligned_cols=343 Identities=9% Similarity=0.019 Sum_probs=230.0
Q ss_pred CcccccccC-CChHHHHHHHHHHhccC-CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHH
Q 010897 58 LNLASFVTT-WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (498)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~l~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~ 135 (498)
++|....+. ++++.+.+++.+.+... ...|....+..++++.+.+++.+.+|.+.+.. ..+++|+|+++|+.+++.
T Consensus 26 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~ 103 (410)
T 3e2y_A 26 VNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPN--EEILVAVGAYGSLFNSIQ 103 (410)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTT--TSEEEESHHHHHHHHHHH
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCC--CCEEEeCCcHHHHHHHHH
Confidence 344444444 35688899998888753 22344444567899999999998888765321 249999999999999888
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC----------CccccCHHHHHHHhhhCCeE
Q 010897 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE----------GYYVMNPVKAVELVDENTIC 205 (498)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~----------~~~~~d~~~L~~~i~~~t~~ 205 (498)
++.++ +++|+++.++|..+...++..|++++.++++. +++.+|+++|++++++++++
T Consensus 104 ~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~ 170 (410)
T 3e2y_A 104 GLVDP-------------GDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKA 170 (410)
T ss_dssp HHCCT-------------TCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEE
T ss_pred HhcCC-------------CCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceE
Confidence 77432 46899999999999999999999999999862 34779999999999988999
Q ss_pred EEEeeccCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--ccc-CCCCeeEEEEcCCccC
Q 010897 206 VAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDF-RLPLVKSINVSGHKYG 279 (498)
Q Consensus 206 v~~~~~~t~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~-~~~~~dsi~~s~hK~l 279 (498)
|++++++||||.+ +++++|.++|+++ |+++++|++|+++.. ...... ..+ .....+.+..+.+|.+
T Consensus 171 v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 242 (410)
T 3e2y_A 171 IILNTPHNPLGKVYTRQELQVIADLCVKH------DTLCISDEVYEWLVY--TGHTHVKIATLPGMWERTITIGSAGKTF 242 (410)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSTTCGGGEEEEEEHHHHS
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHc------CcEEEEEhhhhhccc--CCCCCCCHHHcCCccCeEEEEecchhhc
Confidence 9999999999999 6799999999999 999999999998652 111100 011 1123456777888987
Q ss_pred C-CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHH------hcHHHHHHHHHHHHHHHH
Q 010897 280 L-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR------LGFEGYKNIMENCMGNAR 352 (498)
Q Consensus 280 ~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~------lg~~g~~~~~~~~~~~a~ 352 (498)
+ .+.++|+++.+++ .+ ..+.. +... .. ++-+.....+...++.. ...+.+++..++..++++
T Consensus 243 g~~G~r~G~~~~~~~-~~-~~~~~---~~~~--~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (410)
T 3e2y_A 243 SVTGWKLGWSIGPAH-LI-KHLQT---VQQN--SF----YTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRD 311 (410)
T ss_dssp SCGGGCCEEEECCHH-HH-HHHHH---HHHT--TT----CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEECHH-HH-HHHHH---HHHh--hc----cCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence 5 6788999885432 11 11110 0000 01 12222233333333331 123456778888889999
Q ss_pred HHHHHHhcCCCeEEeeCCCCccEEEEEecCC-CCC--------CHHHHHHHH-HhcCcEeeeecCCCC----CCCeeEEE
Q 010897 353 ALREGLEKTGRFEILSKDVGVPLVAFSLKDS-SAH--------TVFEISEGL-RKFGWIVPAYTMPAN----AENVAVLR 418 (498)
Q Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~-~~~--------~~~~l~~~L-~~~G~~v~~~~~~~~----~~~~~~lR 418 (498)
++.+.|++++ +.+..+. ...++.+.+... ... +..+++++| .++|+.+........ ..+..++|
T Consensus 312 ~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iR 389 (410)
T 3e2y_A 312 RMVRLLNSVG-LKPIVPD-GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVR 389 (410)
T ss_dssp HHHHHHHTTT-CEEEBCS-BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEE
T ss_pred HHHHHHHHCC-CeecCCC-ccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEE
Confidence 9999999985 8876543 455666666421 111 134677765 567988754321110 01347899
Q ss_pred EeecCCCCHHHHHHHHHHHH
Q 010897 419 VVVREDFSRSLVERLISHIE 438 (498)
Q Consensus 419 v~v~~~~t~~~~~~l~~~l~ 438 (498)
+++.. +.++++++++.|+
T Consensus 390 is~~~--~~e~l~~~l~~l~ 407 (410)
T 3e2y_A 390 FCFIK--KDSTLDAAEEIFR 407 (410)
T ss_dssp EECCC--CHHHHHHHHHHHH
T ss_pred EEEcC--CHHHHHHHHHHHH
Confidence 99864 7777776666554
No 133
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.92 E-value=1.8e-23 Score=213.12 Aligned_cols=327 Identities=12% Similarity=0.044 Sum_probs=217.9
Q ss_pred HHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHH-HHHHHHHHHhc
Q 010897 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ 148 (498)
Q Consensus 70 ~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~-~~~~~~~~~~~ 148 (498)
+++.+++.+.+..++.. ...+ ...++++.+++++|.+. +++|+|+++|+.+++.++ ..
T Consensus 12 ~~v~~a~~~~~~~~~~~-~~g~----~~~~l~~~la~~~~~~~-------v~~~~ggt~al~~~~~~l~~~--------- 70 (394)
T 1o69_A 12 GNELKYIEEVFKSNYIA-PLGE----FVNRFEQSVKDYSKSEN-------ALALNSATAALHLALRVAGVK--------- 70 (394)
T ss_dssp CCHHHHHHHHHHHTTTS-CTTH----HHHHHHHHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHHcCCcc-CCCh----HHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC---------
Confidence 45667777777654321 1122 23355566888888742 999999999999998886 22
Q ss_pred CCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh---CCeEEEEeeccCCcccccCHHHHH
Q 010897 149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVKLLH 225 (498)
Q Consensus 149 g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~---~t~~v~~~~~~t~tG~~~~l~~I~ 225 (498)
.+++|+++.++|.++..+++..|++++.+++++ ++.+|+++|++++++ ++++|++++ ++|...|+++|.
T Consensus 71 ----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~ 142 (394)
T 1o69_A 71 ----QDDIVLASSFTFIASVAPICYLKAKPVFIDCDE-TYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIV 142 (394)
T ss_dssp ----TTCEEEEESSSCGGGTHHHHHTTCEEEEECBCT-TSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHH
T ss_pred ----CCCEEEECCCccHHHHHHHHHcCCEEEEEEeCC-CCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHH
Confidence 146899999999999999999999999999985 488999999999987 788888875 799999999999
Q ss_pred HHHHHhhcccCCCceEEEecCcc-cccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccccccc
Q 010897 226 DLLTKKNEETGWDTPIHVDAASG-GFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI 304 (498)
Q Consensus 226 ~la~~~~~~~~~~~~l~vD~A~~-g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~ 304 (498)
++|+++ |+++|+|+||+ ++. +..... .....+|+++++.||.+ ++.++|+++.++++.+ +.+....
T Consensus 143 ~l~~~~------~~~li~Dea~~~g~~--~~~~~~---~~~~~~~~~s~s~~K~l-~~~~~G~~~~~~~~l~-~~l~~~~ 209 (394)
T 1o69_A 143 EICKEN------DIVLIEDAAEALGSF--YKNKAL---GTFGEFGVYSYNGNKII-TTSGGGMLIGKNKEKI-EKARFYS 209 (394)
T ss_dssp HHHHHT------TCEEEEECTTCTTCE--ETTEET---TSSSSEEEEECCTTSSS-CCSSCEEEEESCHHHH-HHHHHHT
T ss_pred HHHHHc------CCEEEEECcCcccce--eCCccc---ccccCcEEEEEeCCccC-CCCCceEEEECCHHHH-HHHHHHH
Confidence 999999 99999999998 432 111100 01235899999999966 5678999998654322 1111111
Q ss_pred CccCCCCCCc--cccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC----CccEEEE
Q 010897 305 NYLGSDQPTF--TLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----GVPLVAF 378 (498)
Q Consensus 305 ~yl~~~~~~~--~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----~~~~v~f 378 (498)
.+.......+ ...+.+.....+...+++..+ +.+++.+++..++++++.+.|+++ ++++.+.. ...+++|
T Consensus 210 ~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i 285 (394)
T 1o69_A 210 TQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM--EVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTA 285 (394)
T ss_dssp BTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEE
T ss_pred HhccccCccccccccCcccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEE
Confidence 1110000000 000111111122222233222 345678888899999999999887 66654421 2235778
Q ss_pred EecCCC-------------------CCCHHHHHHHHHhcCcEeeeecCC----CCCCC----e---------eEEEEeec
Q 010897 379 SLKDSS-------------------AHTVFEISEGLRKFGWIVPAYTMP----ANAEN----V---------AVLRVVVR 422 (498)
Q Consensus 379 ~~~~~~-------------------~~~~~~l~~~L~~~G~~v~~~~~~----~~~~~----~---------~~lRv~v~ 422 (498)
.+++.. +.+..++.+.|.++|+.++....| +.... . ..+|+..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (394)
T 1o69_A 286 LINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSG 365 (394)
T ss_dssp EESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCC
T ss_pred EecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCC
Confidence 875321 235778999999999988654221 11111 0 34555667
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 010897 423 EDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 423 ~~~t~~~~~~l~~~l~~~l~ 442 (498)
...|.+|++++++.|+++++
T Consensus 366 ~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 366 TAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp TTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 78899999999999887753
No 134
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.92 E-value=9.2e-23 Score=209.92 Aligned_cols=320 Identities=13% Similarity=0.038 Sum_probs=216.5
Q ss_pred CcCCcchHHHHHHHHHHHHHHcCCCCCCC----CCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCC
Q 010897 87 MDEYPVTTELQNRCVNMIAHLFNTPVADD----KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN 162 (498)
Q Consensus 87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~----~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~ 162 (498)
|....+..++++++.+++++.+|.+.+.. ....+++|+|+++|+.+++.++.++ +++|+++++
T Consensus 74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~-------------gd~Vlv~~p 140 (425)
T 2r2n_A 74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINP-------------GDNVLLDEP 140 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCT-------------TCEEEEESS
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCC-------------CCEEEEeCC
Confidence 44445667889999999999899875210 0024999999999999998887432 468999999
Q ss_pred chhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhh------------hCCeEEEE-eeccCCcccccCHH---HHHH
Q 010897 163 VQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD------------ENTICVAA-ILGSTLTGEFEDVK---LLHD 226 (498)
Q Consensus 163 ~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~------------~~t~~v~~-~~~~t~tG~~~~l~---~I~~ 226 (498)
+|..+...++..|++++.+|++++ .+|+++|+++++ +++++|++ .+++||||.+.+.+ +|.+
T Consensus 141 ~y~~~~~~~~~~g~~~~~v~~~~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 218 (425)
T 2r2n_A 141 AYSGTLQSLHPLGCNIINVASDES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYE 218 (425)
T ss_dssp CCHHHHHHHGGGTCEEEEECEETT--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCEEEEeCcCCC--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHH
Confidence 999999999999999999999764 399999999997 35777766 58899999998765 8999
Q ss_pred HHHHhhcccCCCceEEEecCcccccccccCCCC--ccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccccccc
Q 010897 227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL--EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI 304 (498)
Q Consensus 227 la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~--~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~ 304 (498)
+|+++ |++|++|++|+++.. ..... -..+.....+.+..+.+|++.++.++||++.++. .. ..+....
T Consensus 219 ~a~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~-l~-~~l~~~~ 288 (425)
T 2r2n_A 219 LARKY------DFLIIEDDPYYFLQF--NKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP-LI-ERVILHI 288 (425)
T ss_dssp HHHHT------TCEEEEECTTGGGBS--SSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH-HH-HHHHHHH
T ss_pred HHHHc------CCEEEEECCcccccC--CCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHH-HH-HHHHHHH
Confidence 99999 999999999997642 11110 0112222346777889999876666899987642 11 1111100
Q ss_pred CccCCCCCCccccCCCchHHHHHHHHHHHHhcHHH----HHHHHHHHHHHHHHHHHHHhc-CCCeEEeeCCCCccEEEEE
Q 010897 305 NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG----YKNIMENCMGNARALREGLEK-TGRFEILSKDVGVPLVAFS 379 (498)
Q Consensus 305 ~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g----~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~v~f~ 379 (498)
... . ++.+.....+...++..++.++ .++..++..++++++.+.|++ ++++..+..+....++.++
T Consensus 289 ~~~-----~----~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~ 359 (425)
T 2r2n_A 289 QVS-----T----LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK 359 (425)
T ss_dssp HTT-----T----CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEE
T ss_pred HHh-----c----CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEE
Confidence 000 0 1222222223333343332222 345556667788889999987 5666322233356677778
Q ss_pred ecCCCCCCHHH-HHHHHHhcCcEeeeecCCCC--CCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 380 LKDSSAHTVFE-ISEGLRKFGWIVPAYTMPAN--AENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 380 ~~~~~~~~~~~-l~~~L~~~G~~v~~~~~~~~--~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+++ ..+..+ +.+.|.++|+.+........ ..+..++|+++.. .+.++++++++.|++++++
T Consensus 360 ~~~--~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 360 VKG--INDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp ETT--CSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred eCC--CCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 854 234445 68889999998754322111 1234689999863 4899999999999988765
No 135
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.3e-23 Score=220.54 Aligned_cols=323 Identities=11% Similarity=0.018 Sum_probs=215.8
Q ss_pred CCCcCCcchHHHHHHHHHHHHHHcC-CCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCc
Q 010897 85 VDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV 163 (498)
Q Consensus 85 ~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~ 163 (498)
..|....+..++++++.+++++..| ++.+. ..+++|+|+++++.+++.++.+. |. ..++.|+++.+.
T Consensus 123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~---~~i~~t~G~~~ai~~~~~~l~~~--------gd-~~~d~Vlv~~p~ 190 (498)
T 3ihj_A 123 GSYSASQGVNCIREDVAAYITRRDGGVPADP---DNIYLTTGASDGISTILKILVSG--------GG-KSRTGVMIPIPQ 190 (498)
T ss_dssp -----CCSCHHHHHHHHHHHHHHTTTCCCCG---GGEEEESSHHHHHHHHHHHHCCC--------CG-GGSEEEEEEESC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCCCCCc---ccEEEcCCHHHHHHHHHHHHcCC--------CC-CCCCEEEEeCCC
Confidence 3455566778899999999998884 75432 34999999999999888876431 10 002489999999
Q ss_pred hhHHHHHHHHcCCeeEEEEecCC-ccccCHHHHHHHhhh-----CCeEEEEeeccCCccccc---CHHHHHHHHHHhhcc
Q 010897 164 QVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEE 234 (498)
Q Consensus 164 h~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~L~~~i~~-----~t~~v~~~~~~t~tG~~~---~l~~I~~la~~~~~~ 234 (498)
|..+...++.+|++++.++++++ +|.+|+++|++++++ ++++|++++|+||||.+. ++++|.++|+++
T Consensus 191 y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~--- 267 (498)
T 3ihj_A 191 YPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE--- 267 (498)
T ss_dssp CTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH---
T ss_pred chhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc---
Confidence 99999999999999999999743 478999999999987 589999999999999994 567799999999
Q ss_pred cCCCceEEEecCcccccccccCCCCcccc-CC---------CCee-EEEEcCCccCC--CCCCeEEEEE--eCCCCCCcc
Q 010897 235 TGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL---------PLVK-SINVSGHKYGL--VYAGVGWVVW--RTKDDLPDE 299 (498)
Q Consensus 235 ~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~---------~~~d-si~~s~hK~l~--~p~g~g~~~~--~~~~~l~~~ 299 (498)
+++|++|++|+.++. ........+ .+ ..+. ++..|.+|.+. ++.++||+++ .+++.. +.
T Consensus 268 ---~~~li~De~y~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~-~~ 341 (498)
T 3ihj_A 268 ---KLFLLADEVYQDNVY--SPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIK-GQ 341 (498)
T ss_dssp ---TCEEEEECTTTTCBC--CTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHH-HH
T ss_pred ---CcEEEEEcCcccccc--CCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHH-HH
Confidence 999999999998752 111011111 00 1222 34558899874 6788999986 232211 11
Q ss_pred cccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcH------------HHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 010897 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF------------EGYKNIMENCMGNARALREGLEKTGRFEIL 367 (498)
Q Consensus 300 ~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~------------~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (498)
+..... ...+ ...+.|.+....+.. ....++.+++.++++++.+.|++++++++.
T Consensus 342 l~~~~~----------~~~~---~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 408 (498)
T 3ihj_A 342 LVKLLS----------VRLC---PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN 408 (498)
T ss_dssp HHHHHH----------HSCC---CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC
T ss_pred HHHHHh----------ccCC---CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEec
Confidence 110000 0011 122333333333321 123456677788999999999999888876
Q ss_pred eCCCCccEEEE-EecCC---------CCCCHHHH--HHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHH
Q 010897 368 SKDVGVPLVAF-SLKDS---------SAHTVFEI--SEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLIS 435 (498)
Q Consensus 368 ~~~~~~~~v~f-~~~~~---------~~~~~~~l--~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~ 435 (498)
.+ ..++++| ++..+ .+.+..++ .+.|.++|+.+..........+..++|+++. .+.++++++++
T Consensus 409 ~p--~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~~i~ 484 (498)
T 3ihj_A 409 PL--QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKTVLQ 484 (498)
T ss_dssp CC--CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHHHHH
T ss_pred CC--CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHHHHH
Confidence 44 4555555 55321 12344443 4566778998765433222244567999994 58899999999
Q ss_pred HHHHHHHHHH
Q 010897 436 HIEEVLKEIE 445 (498)
Q Consensus 436 ~l~~~l~~l~ 445 (498)
.|+++++.+.
T Consensus 485 ~L~~~~~~~~ 494 (498)
T 3ihj_A 485 KVKDFHINFL 494 (498)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 136
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.92 E-value=3.7e-24 Score=219.73 Aligned_cols=330 Identities=13% Similarity=0.014 Sum_probs=219.9
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+........|....+..++++++.+++....+.+. ...+++|+|+++|+.+++.++.++
T Consensus 56 ~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~----~~~i~~t~g~~~al~~~~~~l~~~------ 125 (418)
T 3rq1_A 56 VFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEG----HIRSIATAGGTGGIHHLIHNYTEP------ 125 (418)
T ss_dssp CCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS----EEEEEEESHHHHHHHHHHHHHSCT------
T ss_pred cccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccc----cccEEECCchHHHHHHHHHHhcCC------
Confidence 4556777777665443333455556778888888888877665431 124999999999999998877432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh----CCe-EEEEeec-cCCcccccC
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTI-CVAAILG-STLTGEFED 220 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~----~t~-~v~~~~~-~t~tG~~~~ 220 (498)
+++|++++++|..+...++..|++++.+|++++++.+|+++|++++++ +++ +|++++| +||||.+.|
T Consensus 126 -------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~ 198 (418)
T 3rq1_A 126 -------GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIE 198 (418)
T ss_dssp -------TCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCC
T ss_pred -------CCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCC
Confidence 478999999999999999999999999999654578999999999985 666 7778889 999999988
Q ss_pred HHHHHH---HHH------HhhcccCCCceEEEecCcccccccccC-CCCcccc-CC-CCe-eEEEEcCCccCC-CCCCeE
Q 010897 221 VKLLHD---LLT------KKNEETGWDTPIHVDAASGGFIAPFLY-PDLEWDF-RL-PLV-KSINVSGHKYGL-VYAGVG 286 (498)
Q Consensus 221 l~~I~~---la~------~~~~~~~~~~~l~vD~A~~g~~~~~~~-~~~~~~~-~~-~~~-dsi~~s~hK~l~-~p~g~g 286 (498)
.+++.+ +|+ ++ ++++++|++|.++...-.. ......+ .+ ++. .++..|.+|.++ ++.++|
T Consensus 199 ~~~l~~l~~~~~~~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G 272 (418)
T 3rq1_A 199 DKDWDSILNFLKDLVAIGRN------NVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVG 272 (418)
T ss_dssp HHHHHHHHHHHHHHHHTSSC------EEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCE
T ss_pred HHHHHHHHHHHHHhhhccCC------CeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcce
Confidence 666555 444 77 9999999999876421000 0000011 11 122 366678999764 677899
Q ss_pred EEEEe--CCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHH--------HHHHHHHHHHHHHHHHHH
Q 010897 287 WVVWR--TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE--------GYKNIMENCMGNARALRE 356 (498)
Q Consensus 287 ~~~~~--~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~--------g~~~~~~~~~~~a~~l~~ 356 (498)
|++.. +++.. +.+.....+... . ..+. ...+++.++...+... ..+++.++..++++++.+
T Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~~~-----~-~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 343 (418)
T 3rq1_A 273 AMIGISDDEEIA-DEFFEVNKSTSR-----A-TWSN--ICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQ 343 (418)
T ss_dssp EEEEEESSHHHH-HHHHHHHHHHHH-----H-HTSS--CCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHH-HHHHHHHHHHHh-----h-ccCC--CchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99862 33221 111110000000 0 0011 2234444444444322 223455667778888999
Q ss_pred HHhcCCCeEEeeCCCCccEEEE-EecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHH
Q 010897 357 GLEKTGRFEILSKDVGVPLVAF-SLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLIS 435 (498)
Q Consensus 357 ~L~~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~ 435 (498)
.|++++ +++..+ ..+++.| .+ .+..++++.|.++|+.+... ..++|+++. ..+.++++++++
T Consensus 344 ~L~~~g-~~~~~~--~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~g--------~~~iRis~~-~~~~~~i~~~~~ 406 (418)
T 3rq1_A 344 EAAQVG-LPMLPY--RGGFFITIPT-----DSANAICEELKKEHIYVIAL--------ANGIRIAAC-GIPKCQMTGLAE 406 (418)
T ss_dssp HHHHHT-CCCCCC--CSSSEEEEEC-----TTHHHHHHHHHHTTEECEEC--------SSEEEEEGG-GSCHHHHTTHHH
T ss_pred HHHhcC-CCCCCC--CceEEEEcCC-----CCHHHHHHHHHhCCEEEecC--------CCCeEEEEe-cCCHHHHHHHHH
Confidence 998884 776644 3444444 33 25678999999999886542 246999976 468999999999
Q ss_pred HHHHHHHHHH
Q 010897 436 HIEEVLKEIE 445 (498)
Q Consensus 436 ~l~~~l~~l~ 445 (498)
.|+++++++.
T Consensus 407 ~l~~~l~~~~ 416 (418)
T 3rq1_A 407 KIYNAMKSLG 416 (418)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 137
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.92 E-value=2e-24 Score=223.62 Aligned_cols=291 Identities=11% Similarity=-0.049 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcC
Q 010897 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE 175 (498)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g 175 (498)
...++++++++ +|.+. ..++|+|+|+|+.+++.++.++ +++|+++.++|.++..++...|
T Consensus 58 ~~~~~~~~la~-~g~~~------~v~~~~G~t~a~~~~~~a~~~~-------------gd~Vlv~~~~h~s~~~~~~~~G 117 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDYD------GYFLVNGTTSGILSVIQSFSQK-------------KGDILMARNVHKSVLHALDISQ 117 (446)
T ss_dssp HHHHHHHHHCS-CTTEE------EEEESSHHHHHHHHHHHTTTTS-------------SSCEEECTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-cCCCc------eEEEeCCHHHHHHHHHHHhcCC-------------CCEEEEecCccHHHHHHHHHcC
Confidence 44577888999 98862 3788999999999998887432 4789999999999999999999
Q ss_pred CeeEEEEe--cCCc---cccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccc
Q 010897 176 VELKEVKL--EEGY---YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF 250 (498)
Q Consensus 176 ~~~~~v~~--~~~~---~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~ 250 (498)
++++.+++ +++. +.+|+++| +.+++++|++++ .|++|.+.|+++|.++|+++ |+++|+|+||++
T Consensus 118 ~~~~~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~------~~~livDea~~~- 186 (446)
T 2x3l_A 118 QEGHFIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQL------NIPVLIDEAHGA- 186 (446)
T ss_dssp CCEEECEEEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHT------TCCEEEECTTCT-
T ss_pred CeEEEEeCeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhc------CCeEEEcchhhh-
Confidence 99999998 4321 57899888 567789999998 56699999999999999999 999999999987
Q ss_pred cccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHH
Q 010897 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (498)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~ 330 (498)
...|.. . ..+....++|+++.|+||+++++.|+|++++++. .+. ...+..... ....++.+...+.++.+
T Consensus 187 ~~~f~~-~-~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~-~i~-~~~~~~~~~------~~~~~s~~~~~~aal~~ 256 (446)
T 2x3l_A 187 HFGLQG-F-PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKN-APY-RENIIEYLS------YFQTSSPSYLIMASLES 256 (446)
T ss_dssp TTTSTT-S-CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETT-CTT-HHHHHHHHH------HHSCSSCCHHHHHHHHH
T ss_pred hhccCC-C-CCChHHcCCCEEEECCccccccccccEEEEEcCC-cCC-HHHHHHHHH------HHcCCCchHHHHHHHHH
Confidence 333322 1 1122112478999999999999999999998764 221 101110000 00013444444555666
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC
Q 010897 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN 410 (498)
Q Consensus 331 ~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~ 410 (498)
+++.+...+.++..++..++++++++. +++++.+. ....+.+.++ +.+..++.+.|.++|+.+...
T Consensus 257 a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~-~~~~l~i~~~---~~~~~~l~~~L~~~GI~v~~~----- 322 (446)
T 2x3l_A 257 AAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVD-DPLKLLIKYE---GFTGHDIQNWFMNAHIYLELA----- 322 (446)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECS-STTEEEEECT---TSCHHHHHHHHHHTTEEESEE-----
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCC-CCeEEEEEeC---CcCHHHHHHHHHHCCCEEEec-----
Confidence 666665555555777888888888776 47777653 2345777774 467889999999999886411
Q ss_pred CCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 411 AENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 411 ~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
+..++|++++...|.+++ ++++.|+++++.+
T Consensus 323 --g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 323 --DDYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp --CSSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred --CCCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 124699999887799999 9999999887654
No 138
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.92 E-value=1.6e-23 Score=214.55 Aligned_cols=368 Identities=13% Similarity=0.057 Sum_probs=223.8
Q ss_pred HHHHHHHhhhccCCCC-CcccccccCCCh---HHHHHHHHHHhccCC-----CCCcCCcchHHHHHHHHHHHHHHcCCCC
Q 010897 42 AYQVINDELMLDGNPR-LNLASFVTTWME---PECDKLVMASINKNY-----VDMDEYPVTTELQNRCVNMIAHLFNTPV 112 (498)
Q Consensus 42 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~---~~~~~~l~~~~~~n~-----~~~~~~~~~~~le~~~~~~la~l~g~~~ 112 (498)
+.+.+.+......++. ++|+...|...+ +.+.+++.+.+..+. ..|....+..++++.+.+++.+.+|++.
T Consensus 17 ~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~ 96 (417)
T 3g7q_A 17 ITRLMEDLNDGLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDI 96 (417)
T ss_dssp HHHHHHHHHC-----CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhhccCCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCC
Confidence 3344444433323333 556666555432 345666666554321 2455556778899999999888888765
Q ss_pred CCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEc-CCchhHHHHHHHHc----CCeeEEEEecCC-
Q 010897 113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG-ANVQVCWEKFARYF----EVELKEVKLEEG- 186 (498)
Q Consensus 113 ~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s-~~~h~~~~~~~~~~----g~~~~~v~~~~~- 186 (498)
+. ..+++|+|+++|+.+++.++.++ |.+.++.+|+++ .++|..+...+... +..+..++++.+
T Consensus 97 ~~---~~i~~t~G~t~al~~~~~~l~~~--------gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (417)
T 3g7q_A 97 EP---QNIALTNGSQSAFFYLFNLFAGR--------RADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ 165 (417)
T ss_dssp CG---GGEEEESCHHHHHHHHHHHHSBC------------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE
T ss_pred Cc---ccEEEeCCcHHHHHHHHHHHcCC--------CccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc
Confidence 32 34999999999999999887432 100011278887 89998887765432 333444444332
Q ss_pred -ccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc
Q 010897 187 -YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD 262 (498)
Q Consensus 187 -~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~ 262 (498)
++.+|+++|+ +++++++|++++++||||.+.| +++|.++|+++ |+++++|++|+.+..+.......
T Consensus 166 ~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~------~~~li~De~~~~~~~~~~~~~~~-- 235 (417)
T 3g7q_A 166 FKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH------NIPLVIDNAYGVPFPGIIFSEAR-- 235 (417)
T ss_dssp EEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTCCBCSCCC--
T ss_pred cccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc------CCEEEEeCCCccccccccccccc--
Confidence 4678999988 7778999999999999999988 88899999999 99999999998643211111111
Q ss_pred cCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHH-HH
Q 010897 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG-YK 341 (498)
Q Consensus 263 ~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g-~~ 341 (498)
......+++..+.+|++.++.++||++.+ ++.. +.+...... .+ ++.+.....+....+....... ..
T Consensus 236 ~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~-~~~~~~~~~-------~~--~~~~~~~~~~~~~~l~~~~~~~~~~ 304 (417)
T 3g7q_A 236 PLWNPNIILCMSLSKLGLPGSRCGIIIAN-DKTI-TAIANMNGI-------IS--LAPGGMGPAMMCEMIKRNDLLRLSE 304 (417)
T ss_dssp CCCCTTEEEEEESGGGTCTTSCCEEEECC-HHHH-HHHHHHHHH-------HC--CCCCSHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCCCEEEEEechhccCCCcceEEEEeC-HHHH-HHHHHhhcc-------ee--eCCCcHHHHHHHHHHcCcchHHHHH
Confidence 11234577788899988888889988753 2211 111100000 00 1111122222223332222111 12
Q ss_pred H-HHHHHHHHHHHHHHHHhc-CCC--eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecC-CCCCCC---
Q 010897 342 N-IMENCMGNARALREGLEK-TGR--FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTM-PANAEN--- 413 (498)
Q Consensus 342 ~-~~~~~~~~a~~l~~~L~~-~~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~-~~~~~~--- 413 (498)
+ ..++..++++++.+.|++ +++ +.+..+. ...++.+.++. .+.+..++.+.|.++|+.+..... .....+
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~ 382 (417)
T 3g7q_A 305 TVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPE-GAIFLWLWFKD-LPITTELLYQRLKARGVLMVPGHYFFPGLDKPWP 382 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCC-BSSEEEEECTT-CSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCceeeCCC-cceEEEEEcCC-CCCCHHHHHHHHHHCCEEEECchhhCCCCccccc
Confidence 2 444556677777777765 442 6665443 45666677743 246788999999999998764321 111111
Q ss_pred --eeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 414 --VAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 414 --~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
..++|+++.. +.++++++++.|+++++++.
T Consensus 383 ~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 383 HTHQCMRMNYVP--EPDKIEAGVKILAEEIERAW 414 (417)
T ss_dssp GGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHH
Confidence 5689999974 89999999999999987654
No 139
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.91 E-value=1.6e-23 Score=227.02 Aligned_cols=309 Identities=13% Similarity=0.023 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHH-HHHcC
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-ARYFE 175 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~-~~~~g 175 (498)
-.++++.+|+++|.+. ...+++|++++|..++.++..+ +++|+++.+.|.++..+ ++..|
T Consensus 175 i~e~e~~lA~~~gae~------~i~v~nGtt~an~~ai~al~~p-------------GD~VLv~~~~H~S~~~~~~~l~G 235 (730)
T 1c4k_A 175 AVAAEKHAARVYNADK------TYFVLGGSSNANNTVTSALVSN-------------GDLVLFDRNNHKSVYNSALAMAG 235 (730)
T ss_dssp HHHHHHHHHHHTTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHCCCc------EEEECCHHHHHHHHHHHHhcCC-------------CCEEEEcCCchHHHHHHHHHHCC
Confidence 3467777999999874 2677778889998888887442 57999999999999988 88899
Q ss_pred CeeEEEEecCCc----cccCHHHH-----HHHhhhC------C----eEEEEeeccCCcccccCHHHHHHHHHHhhcccC
Q 010897 176 VELKEVKLEEGY----YVMNPVKA-----VELVDEN------T----ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETG 236 (498)
Q Consensus 176 ~~~~~v~~~~~~----~~~d~~~L-----~~~i~~~------t----~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~ 236 (498)
++++.++.+.+. +.+|+++| +++|+++ + ++|+++++ |++|.+.|+++|.++|+++
T Consensus 236 a~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~----- 309 (730)
T 1c4k_A 236 GRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHL----- 309 (730)
T ss_dssp CEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGG-----
T ss_pred CEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHc-----
Confidence 999999875332 34788888 9999775 5 78888988 5899999999999999999
Q ss_pred CCceEEEecCcccccccccCCCC----ccccCCCCee----EEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccC
Q 010897 237 WDTPIHVDAASGGFIAPFLYPDL----EWDFRLPLVK----SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLG 308 (498)
Q Consensus 237 ~~~~l~vD~A~~g~~~~~~~~~~----~~~~~~~~~d----si~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~ 308 (498)
++++|||+||+.+.. | .+.. ..+....++| +++.|+||++.++.+.|+++++++..... ..++.
T Consensus 310 -g~~livDeAh~~~~~-f-~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~-----~~~i~ 381 (730)
T 1c4k_A 310 -CDYIEFDSAWVGYEQ-F-IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQ-----LRYCD 381 (730)
T ss_dssp -BSEEEEECTTCCGGG-S-SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTS-----TTCCC
T ss_pred -CCeEEEEcccccccc-c-CcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCc-----ccccC
Confidence 999999999975421 2 1111 1111112455 89999999998888889998887532100 00110
Q ss_pred CCC--C--CccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeeCCC------------
Q 010897 309 SDQ--P--TFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGRFEILSKDV------------ 371 (498)
Q Consensus 309 ~~~--~--~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~------------ 371 (498)
... . .....++.+...+.++-+++..+..++..+.+++..++++++++.|++ +++|+++.+..
T Consensus 382 ~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~ 461 (730)
T 1c4k_A 382 HKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTE 461 (730)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccc
Confidence 000 0 000113444445556666777776644567789999999999999998 78898865421
Q ss_pred -------------------------Cc-cE----EEEEecC---------CCCCCHHHHHHHHHhcCcEeeeecCCCCCC
Q 010897 372 -------------------------GV-PL----VAFSLKD---------SSAHTVFEISEGLRKFGWIVPAYTMPANAE 412 (498)
Q Consensus 372 -------------------------~~-~~----v~f~~~~---------~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~ 412 (498)
.. .+ +.|..++ ..+.+...+.+.|.++|+.+...
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~------- 534 (730)
T 1c4k_A 462 DMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS------- 534 (730)
T ss_dssp HHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-------
T ss_pred cccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-------
Confidence 00 12 5666642 12467889999999999876431
Q ss_pred CeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 413 NVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 413 ~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
+...+|++++...|.+++++|+++|+++.+.++
T Consensus 535 ~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 535 DLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 235689999998999999999999999988775
No 140
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.91 E-value=1.7e-22 Score=207.18 Aligned_cols=293 Identities=18% Similarity=0.096 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH----
Q 010897 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---- 171 (498)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~---- 171 (498)
...++++++++++|.+. +++|+||++|+.+++.++.++ +++|+++.+.|.+....+
T Consensus 57 ~~~~l~~~la~~~g~~~-------~~~~~~gt~a~~~al~~l~~~-------------gd~vi~~~~~~~~~~~~~~~~~ 116 (412)
T 2cb1_A 57 TAKALEERLKALEGALE-------AVVLASGQAATFAALLALLRP-------------GDEVVAAKGLFGQTIGLFGQVL 116 (412)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCCT-------------TCEEEEETTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchhHHHHHHHHH
Confidence 34567777999999753 899999999999998876321 468999999998766553
Q ss_pred HHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCccccc
Q 010897 172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI 251 (498)
Q Consensus 172 ~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~ 251 (498)
+..|++++.+++ |+++|+++++++|++|+++.++|++|.+.|+++|.++|+++ |+++|+|++|+.+.
T Consensus 117 ~~~g~~~~~~~~-------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~------~~~li~D~~~~~~~ 183 (412)
T 2cb1_A 117 SLMGVTVRYVDP-------EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEA------GVALVVDNTFGAAG 183 (412)
T ss_dssp TTTTCEEEEECS-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGTTT
T ss_pred HHcCCEEEEECC-------CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 447888888874 38999999999999999999999999999999999999999 99999999998762
Q ss_pred ccccCCCCccccCCCCeeEEEEcCCccCCCCCC-eEEEEEeCCCCCC-cccccccCcc-CC---------C----CCCcc
Q 010897 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDLP-DELVFHINYL-GS---------D----QPTFT 315 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g-~g~~~~~~~~~l~-~~~~~~~~yl-~~---------~----~~~~~ 315 (498)
.. ..+ .+ .+.|+++.|+||++.+|.+ +|++++.++.... ....+..... +. . ...++
T Consensus 184 ~~-~~~---~~---~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~ 256 (412)
T 2cb1_A 184 AL-CRP---LA---WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLG 256 (412)
T ss_dssp TS-CCG---GG---GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHH
T ss_pred cc-CCc---cc---cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHH
Confidence 11 111 11 2489999999999987766 7888877643200 0000000000 00 0 00000
Q ss_pred c--cCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEee-CC---------------CCccEEE
Q 010897 316 L--NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILS-KD---------------VGVPLVA 377 (498)
Q Consensus 316 l--~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~---------------~~~~~v~ 377 (498)
+ .+.. ......++.+..+ +.+.+++++..++++++.+.|.+.+++.++. +. ...++++
T Consensus 257 ~~~~g~~--~~~~~a~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~ 332 (412)
T 2cb1_A 257 LSLCGMA--LSPFNAYLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILT 332 (412)
T ss_dssp TTTTCCC--CCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEE
T ss_pred HHhcCCC--CChHHhHHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence 0 0111 1122333333322 3456677778889999999999988887542 21 1357999
Q ss_pred EEecCCCCCCHHHHHHHHHhcCcEeeee---------cCCCCC--------------CCeeEEEEeecCCCCHHHHHHHH
Q 010897 378 FSLKDSSAHTVFEISEGLRKFGWIVPAY---------TMPANA--------------ENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 378 f~~~~~~~~~~~~l~~~L~~~G~~v~~~---------~~~~~~--------------~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
|.+ + +...+.+.|.+.|+.+ +. ..|... .....+|+|++...+.++++.|.
T Consensus 333 ~~~-~----~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~ 406 (412)
T 2cb1_A 333 LDL-G----DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFE 406 (412)
T ss_dssp EEC-S----SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHH
T ss_pred EEe-C----CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHH
Confidence 998 4 4567888888899887 44 122110 11468999999888888887777
Q ss_pred HHHH
Q 010897 435 SHIE 438 (498)
Q Consensus 435 ~~l~ 438 (498)
++|+
T Consensus 407 ~al~ 410 (412)
T 2cb1_A 407 EALE 410 (412)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7665
No 141
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.91 E-value=3.5e-23 Score=214.14 Aligned_cols=353 Identities=14% Similarity=0.079 Sum_probs=221.4
Q ss_pred cccccccCCCh---HHHHHHHHHHhcc-------C-----CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeee
Q 010897 59 NLASFVTTWME---PECDKLVMASINK-------N-----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT 123 (498)
Q Consensus 59 ~~~~~~~~~~~---~~~~~~l~~~~~~-------n-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t 123 (498)
+|....|..++ +.+.+++.+.+.. . ...|....+..++++++.+++.+.+|++.+. ..+++|
T Consensus 36 ~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~---~~i~~t 112 (444)
T 3if2_A 36 MLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTS---ENIALT 112 (444)
T ss_dssp ECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEE
T ss_pred ccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCH---HHEEEe
Confidence 55665555533 2345555555544 1 1334455567889999999998888876432 349999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCC-----CCCCc----EEEEc-CCchhHHHHHH------HHcCCeeEEEEecCC-
Q 010897 124 VGSSEAIMLAGLAFKRKWQQKRKEQGK-----PYDKP----NIVTG-ANVQVCWEKFA------RYFEVELKEVKLEEG- 186 (498)
Q Consensus 124 ~g~sea~~la~~a~~~~~~~~~~~~g~-----~~~~~----~Iv~s-~~~h~~~~~~~------~~~g~~~~~v~~~~~- 186 (498)
+|+++|+.+++.++.++ |. ...++ +|+++ .++|..+...+ ...|..+..++++++
T Consensus 113 ~G~t~al~~~~~~l~~~--------gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (444)
T 3if2_A 113 NGSQNAFFYLFNLFGGA--------FVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEE 184 (444)
T ss_dssp SSHHHHHHHHHHHSSEE--------EECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEE
T ss_pred cCcHHHHHHHHHHHhCC--------CccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccccccc
Confidence 99999999998876432 10 00001 57775 78888776532 334667777887642
Q ss_pred ---ccccCHHHHHHH---hhhCCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCC
Q 010897 187 ---YYVMNPVKAVEL---VDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP 257 (498)
Q Consensus 187 ---~~~~d~~~L~~~---i~~~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~ 257 (498)
++.+|+++|+++ ++++|++|++++++||||.+.| +++|.++|+++ |++||+|++|+.+.......
T Consensus 185 g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~~~~~ 258 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY------DIPLIIDNAYGMPFPNIIYS 258 (444)
T ss_dssp EEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTCCBCS
T ss_pred CccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC------CCEEEEECCCCCcccccccc
Confidence 257999999998 6778999999999999999988 88899999999 99999999998643211111
Q ss_pred CCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcH
Q 010897 258 DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF 337 (498)
Q Consensus 258 ~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~ 337 (498)
.. .......+++..+.+|++.++.++||++.+. +.. ..+..... ..+ ++.+.....+....+.....
T Consensus 259 ~~--~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~l~-~~~~~~~~-------~~~--~~~~~~~~~a~~~~l~~~~~ 325 (444)
T 3if2_A 259 DA--HLNWDNNTILCFSLSKIGLPGMRTGIIVADA-KVI-EAVSAMNA-------VVN--LAPTRFGAAIATPLVANDRI 325 (444)
T ss_dssp CC--CCCCCTTEEEEEESTTTTCGGGCCEEEECCH-HHH-HHHHHHHH-------HHH--SSCCCHHHHHHHHHHHTSHH
T ss_pred cc--cccCCCCEEEEechhhccCCCCceEEEEECH-HHH-HHHHHHHH-------hcc--CCCChHHHHHHHHHHHcCch
Confidence 11 0122356788889999977778899887432 111 11110000 000 11111222222222221111
Q ss_pred H-HHHH-HHHHHHHHHHHHHHHHhc-CCC--eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC--
Q 010897 338 E-GYKN-IMENCMGNARALREGLEK-TGR--FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN-- 410 (498)
Q Consensus 338 ~-g~~~-~~~~~~~~a~~l~~~L~~-~~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~-- 410 (498)
. ..++ ..++..++++++.+.|.+ +++ +.+..+. ...++.+.++. .+.+..++.+.|.++|+.+........
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~l~~~l~~~gi~v~~g~~~~~~~ 403 (444)
T 3if2_A 326 KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE-GAIFLWLWFKD-LPISTLDLYERLKAKGTLIVPSEYFFPGV 403 (444)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC-BSSEEEEEETT-CSSCHHHHHHHHHHTTEECEEGGGSCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC-ccEEEEEEcCC-CCCCHHHHHHHHHHCCeEEecchhhcCCC
Confidence 1 1122 344555566667666654 442 5655443 45666677743 246788999999999998764332111
Q ss_pred -----CCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 411 -----AENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 411 -----~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
.....++|+++.. +.++++++++.|+++++++.
T Consensus 404 ~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 404 DVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp CCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHH
Confidence 1123689999975 89999999999999987764
No 142
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.91 E-value=1.9e-22 Score=205.13 Aligned_cols=318 Identities=12% Similarity=0.026 Sum_probs=211.8
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+.........++ .....++++++++++|.+ .+++|+||++|+.+++.+++..+. ..
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~g~~-------~v~~~~~gt~a~~~al~~~~~~~~---~~ 120 (392)
T 3ruy_A 53 RHPKIINALIDQANRVTLTSRAFH--SDQLGPWYEKVAKLTNKE-------MVLPMNTGAEAVETAIKTARRWAY---DV 120 (392)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSE--ETTHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHH---HT
T ss_pred CCHHHHHHHHHHHHhccccccccC--CHHHHHHHHHHHHhcCCC-------EEEEeCcHHHHHHHHHHHHHHhhh---hc
Confidence 468899999888876443222222 234457778899999843 399999999999999987754321 12
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCCe-------------eEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVE-------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~-------------~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
.|.+.++++|++..++|..+...+..++.. +..++. .|+++|++++++++++|+++.++|+
T Consensus 121 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~np 194 (392)
T 3ruy_A 121 KKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY------GDLEALKAAITPNTAAFILEPIQGE 194 (392)
T ss_dssp SCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT------TCHHHHHHHCCTTEEEEEECSSBST
T ss_pred cCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc------ccHHHHHHHhccCeEEEEEeCccCC
Confidence 233334568998888876544444333221 222221 2899999999988999999999999
Q ss_pred cccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCC-CCeEEE
Q 010897 215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVY-AGVGWV 288 (498)
Q Consensus 215 tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p-~g~g~~ 288 (498)
||.+.| +++|.++|+++ |+++|+|++|+++.. .......+. +. ..|.+++| |.+.++ .++|++
T Consensus 195 tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~-~~d~~~~S--K~l~gG~~~~G~~ 263 (392)
T 3ruy_A 195 AGINIPPAGFLKEALEVCKKE------NVLFVADEIQTGLGR--TGKVFACDWDNV-TPDMYILG--KALGGGVFPISCA 263 (392)
T ss_dssp TTSBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEEEEC--GGGGTTTSCCEEE
T ss_pred CCCccCCHHHHHHHHHHHHHc------CCEEEEeechhCCCc--cccchhhhccCC-CCCEEEEc--hhhhCChhhhEEE
Confidence 999998 99999999999 999999999986531 111111111 11 25666665 876554 678998
Q ss_pred EEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEE
Q 010897 289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG--RFEI 366 (498)
Q Consensus 289 ~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~--~~~~ 366 (498)
+.++. .. +. +.......+ ++.+.....+..++++.+.. .+..++..++++++.+.|++++ .+..
T Consensus 264 ~~~~~-~~-~~-------~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 329 (392)
T 3ruy_A 264 AANRD-IL-GV-------FEPGSHGST--FGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITE 329 (392)
T ss_dssp EECHH-HH-TT-------CCTTSSCCS--STTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEE
T ss_pred EECHH-HH-hh-------hccCCcCCC--CCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 87542 11 11 111011111 22233444444455544322 5677888889999999999874 2443
Q ss_pred eeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 367 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 367 ~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
..+ ..+++.|.+++ +..++.+.|.++|+.+... +..++|++++...+.++++++++.|++++
T Consensus 330 ~~~--~g~~~~~~~~~----~~~~l~~~l~~~gi~v~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 330 VRG--KGLFIGIELNE----PARPYCEQLKAAGLLCKET-------HENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EEE--ETTEEEEEESS----CSHHHHHHHHTTTEECCCB-------TTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEe--eeeEEEEEEcc----hHHHHHHHHHHCCcEEecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 322 46788888743 5578999999999876431 24679999888889999999999998875
No 143
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.91 E-value=8.9e-23 Score=209.06 Aligned_cols=333 Identities=14% Similarity=0.098 Sum_probs=214.7
Q ss_pred ChHHHHHHHHHHhccCC--C-----CCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNY--V-----DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~--~-----~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~ 140 (498)
.+|.+.+++.+.+...+ . .+........+++.+++++++++|.+.. .+++++|++|+.+++.++.++
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------~v~~~sGs~a~~~a~~~~~~~ 115 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA------NVQPHSGSQANFAVYTALLQP 115 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE------ECCCSSHHHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc------eeEecCcHHHHHHHHHHhcCC
Confidence 46888898888774322 1 1111223346677777899999998641 333455589998888776432
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCchhHHH---HHHHHcCCe--eEEEEecCCccccCHHHHHHHhhh-CCeEEEEeeccCC
Q 010897 141 WQQKRKEQGKPYDKPNIVTGANVQVCWE---KFARYFEVE--LKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL 214 (498)
Q Consensus 141 ~~~~~~~~g~~~~~~~Iv~s~~~h~~~~---~~~~~~g~~--~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~ 214 (498)
+++|+++.++|.++. ......|.. ...++.++ ++.+|+++|++++++ ++++|+++.++++
T Consensus 116 -------------gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~~~ 181 (420)
T 3gbx_A 116 -------------GDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGFSAYS 181 (420)
T ss_dssp -------------TCEEEEEEEC------------CHHHHSEEEEEEECT-TCSCCHHHHHHHHHHHCCSEEEECCTTCC
T ss_pred -------------CCEEEecchhhcceeccchhhhhcccceeEEeccCCc-cCCcCHHHHHHHHHhcCCeEEEEecCccC
Confidence 478999999998743 222333444 44555554 478999999999987 5888988887764
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCC
Q 010897 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (498)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~ 294 (498)
...|+++|.++|+++ |+++|+|++|+.+.. ........ ...+|+++.++||++.+|.| |+++.++.-
T Consensus 182 --~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~~~~~~~~--~~~~di~~~s~sK~~~g~~g-g~~~~~~~~ 248 (420)
T 3gbx_A 182 --GVVDWAKMREIADSI------GAYLFVDMAHVAGLI--AAGVYPNP--VPHAHVVTTTTHKTLAGPRG-GLILAKGGD 248 (420)
T ss_dssp --SCCCHHHHHHHHHHT------TCEEEEECTTTHHHH--HTTSSCCS--TTTSSEEEEESSGGGCSCSC-EEEEESSCC
T ss_pred --CccCHHHHHHHHHHc------CCEEEEECCcchhce--ecccCCcc--cccCCEEEeecccCCCCCCc-eEEEEcCCc
Confidence 578999999999999 999999999864432 11111111 23478999999999876665 887765410
Q ss_pred -CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCc
Q 010897 295 -DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGV 373 (498)
Q Consensus 295 -~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 373 (498)
.+...+ ....... ..++.....+.++.+++.....++++++.++..++++++.+.|++.+ ++++.++...
T Consensus 249 ~~~~~~~--~~~~~~~------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~ 319 (420)
T 3gbx_A 249 EELYKKL--NSAVFPS------AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRG-YKVVSGGTEN 319 (420)
T ss_dssp HHHHHHH--HHHHC----------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSS
T ss_pred HHHHHHh--hhhcCCC------CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC-CeeccCCCCC
Confidence 111111 0000000 01233334555556666665566778899999999999999999865 8887643356
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC---CCCeeEEEEeecCC----CCHHHHHHHHHHHHHHHHH
Q 010897 374 PLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN---AENVAVLRVVVRED----FSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 374 ~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~---~~~~~~lRv~v~~~----~t~~~~~~l~~~l~~~l~~ 443 (498)
+++.+.+++ .+.+...+.+.|.++|+.+.....|.. ..+...+|+++... .+.++++++++.|+++++.
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 320 HLFLLDLVD-KNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp SEEEEECGG-GTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCC-CCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 777777743 245778899999999998765322211 12234599997543 4578999999999888754
No 144
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.91 E-value=9.2e-23 Score=209.61 Aligned_cols=342 Identities=13% Similarity=0.054 Sum_probs=216.4
Q ss_pred CcccccccC----CChHHHHHHHH--HHhccC--CCCC-cCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 58 LNLASFVTT----WMEPECDKLVM--ASINKN--YVDM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 58 ~~~~~~~~~----~~~~~~~~~l~--~~~~~n--~~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
++|..+.|. +.++.+.+++. +.+... ...| ...++..++++ .++++++.+++ .+++|+|+++
T Consensus 28 i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~----~ia~~~~~~~~-----~i~~t~G~~~ 98 (423)
T 3ez1_A 28 LNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARA----LFAGYLDVKAE-----NVLVWNNSSL 98 (423)
T ss_dssp EESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHH----HHHHHTTSCGG-----GEEECSSCHH
T ss_pred EecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHH----HHHHHhCCChh-----hEEEeCCcHH
Confidence 445555554 12334555553 444321 1233 33344455554 47777887652 4999999999
Q ss_pred HHH--HHHHHHHH--HHHHHHHhcCC--CC--CCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHh-
Q 010897 129 AIM--LAGLAFKR--KWQQKRKEQGK--PY--DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV- 199 (498)
Q Consensus 129 a~~--la~~a~~~--~~~~~~~~~g~--~~--~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i- 199 (498)
++. +++.++.. + |. +. .+++|+++.++|..+...++..|++++.+|++++ + +|+++|++++
T Consensus 99 al~~~~~~~~l~~~~~--------g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~ 168 (423)
T 3ez1_A 99 ELQGLVLTFALLHGVR--------GSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD-G-PDVDAVERLAG 168 (423)
T ss_dssp HHHHHHHHHHHHTCCT--------TCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-E-ECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC--------CccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC-C-CCHHHHHHHHh
Confidence 997 77776643 2 00 00 0368999999999999999999999999999875 3 9999999999
Q ss_pred -hhCCeEEEEe-eccCCcccccCHH---HHHHHH-HHhhcccCCCceEEEecCcccccccccC-C--CC-c-ccc----C
Q 010897 200 -DENTICVAAI-LGSTLTGEFEDVK---LLHDLL-TKKNEETGWDTPIHVDAASGGFIAPFLY-P--DL-E-WDF----R 264 (498)
Q Consensus 200 -~~~t~~v~~~-~~~t~tG~~~~l~---~I~~la-~~~~~~~~~~~~l~vD~A~~g~~~~~~~-~--~~-~-~~~----~ 264 (498)
++++++|+++ +++||||.+.|.+ +|.++| +++ |+++++|++|+.+.. .. . .. . ..+ .
T Consensus 169 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~~ 240 (423)
T 3ez1_A 169 TDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP------DFTIFADDAYRVHHL--VEEDRAEPVNFVVLARDAG 240 (423)
T ss_dssp SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSST------TCEEEEECTTSSCBC--CSSSCCCCCCHHHHHHHHT
T ss_pred hCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhcc------CCEEEEECCcchhhc--CCCCCCCCcchhhhhhccC
Confidence 4678888655 7899999998877 777787 888 999999999985321 11 0 00 0 011 1
Q ss_pred CCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcH------H
Q 010897 265 LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF------E 338 (498)
Q Consensus 265 ~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~------~ 338 (498)
....+.+..+.+|+++++.++||++.+.. .. ..+.....+.. ++. ..+.++++...+.. +
T Consensus 241 ~~~~~i~~~S~sK~~~~G~r~G~~~~~~~-~~-~~~~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~ 306 (423)
T 3ez1_A 241 YPDRAFVFASTSKITFAGAGLGFVASSED-NI-RWLSKYLGAQS---------IGP---NKVEQARHVKFLTEYPGGLEG 306 (423)
T ss_dssp CTTSEEEEEESTTTSCSSSSCEEEEECHH-HH-HHHHHHHHHSC---------SCC---CHHHHHHHHHHHHHSTTHHHH
T ss_pred CCCeEEEEeCchhhccCCcceEEEEeCHH-HH-HHHHHHHhhhc---------cCC---CHHHHHHHHHHHHhccchHHH
Confidence 33467778899999888899999886532 11 11110000000 111 22233333333332 2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhcCC-CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeee-ec-CC-CC
Q 010897 339 GYKNIMENCMGNARALR----EGLEKTG-RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPA-YT-MP-AN 410 (498)
Q Consensus 339 g~~~~~~~~~~~a~~l~----~~L~~~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~-~~-~~-~~ 410 (498)
.+++..+...+.++.+. +.|.+++ ++.+..+. ..+++.+.+++. +...+.+.|.++|+.+.. .. ++ ..
T Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~-~g~~~~~~~~~~---~~~~~~~~l~~~gv~v~~~g~~~~~~~ 382 (423)
T 3ez1_A 307 LMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK-GGYFISLDTAEP---VADRVVKLAEAAGVSLTPAGATYPAGQ 382 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS-BSSCEEEEESSS---CHHHHHHHHHHTTEECCCTTTTSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC-ccEEEEEECCCC---cHHHHHHHHHHCCcEEecCcccccCCC
Confidence 23333333344444444 4444455 46665443 566777888542 677899999999998754 21 11 11
Q ss_pred CCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 411 AENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 411 ~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
.....++|+++... +.++++++++.|+++++++.
T Consensus 383 ~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 383 DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 13457899999644 89999999999999987653
No 145
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.91 E-value=8.4e-23 Score=208.84 Aligned_cols=287 Identities=17% Similarity=0.110 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHH----HH
Q 010897 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FA 171 (498)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~----~~ 171 (498)
..+++++++++++|.+. .++++||++|+.+++.++.++ +++|+++.+.|.++.. .+
T Consensus 63 ~~~~l~~~ia~~~g~~~-------~i~~~~g~~ai~~~~~~l~~~-------------gd~Vl~~~~~y~~~~~~~~~~~ 122 (404)
T 1e5e_A 63 TVSNLEGKIAFLEKTEA-------CVATSSGMGAIAATVLTILKA-------------GDHLISDECLYGCTHALFEHAL 122 (404)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhCCCc-------EEEeCChHHHHHHHHHHHhCC-------------CCEEEEeCCCchhHHHHHHHHH
Confidence 33456667888888853 788888899999888876432 4689999999998888 78
Q ss_pred HHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHH-hhcccCCCceEEEecCcccc
Q 010897 172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVDAASGGF 250 (498)
Q Consensus 172 ~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~-~~~~~~~~~~l~vD~A~~g~ 250 (498)
+..|++++.++++ |+++|+++++++|++|++++|+||||.+.|+++|.++|++ + |+++++|++|+.+
T Consensus 123 ~~~g~~~~~v~~~------d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~------~~~li~De~~~~~ 190 (404)
T 1e5e_A 123 TKFGIQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQE------GVLVIADNTFCSP 190 (404)
T ss_dssp HHTTCEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTST------TCEEEEECTTTCT
T ss_pred HHcCCEEEEECCC------CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhc------CCEEEEECCCchh
Confidence 8899999998864 7889999999899999999999999999999999999999 9 9999999999987
Q ss_pred cccccCCCCccccCCCCeeEEEEcCCccCCCCCC--eEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHH
Q 010897 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ 328 (498)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g--~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~ 328 (498)
.. ..+ ..+ +.|++..|+||++++|.+ +|+++.+++ .+...+.....+. ++ ++ ...+.+
T Consensus 191 ~~--~~~---~~~---~~di~~~S~sK~~~~~g~ri~G~~~~~~~-~~~~~l~~~~~~~------~g--~~---~~~~~~ 250 (404)
T 1e5e_A 191 MI--TNP---VDF---GVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDI------TG--SV---ISPHDA 250 (404)
T ss_dssp TT--CCG---GGG---TCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCC------CC--CC---CCHHHH
T ss_pred hh--CCc---ccc---CCEEEEEcCccccCCCCCCeEEEEEECHH-HHHHHHHHHHHhC------CC--CC---CCHHHH
Confidence 52 111 111 488999999998877655 598887643 2210111111111 01 11 122445
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EeeCC---------------CCccEEEEEecCCCCCCHHHHH
Q 010897 329 YYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE-ILSKD---------------VGVPLVAFSLKDSSAHTVFEIS 392 (498)
Q Consensus 329 ~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~-~~~~~---------------~~~~~v~f~~~~~~~~~~~~l~ 392 (498)
++++..+.. +..++++..++++.+.+.|++.+.+. ++.+. ...++++|.+++ ....+.
T Consensus 251 ~~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~----~~~~~~ 324 (404)
T 1e5e_A 251 WLITRGLST--LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS----GFEGAK 324 (404)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT----HHHHHH
T ss_pred HHHHHhHhH--HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC----CHHHHH
Confidence 555555532 45567777788888888888776443 22110 127899998853 124566
Q ss_pred HHHHhcCcEeeeecC---------CCC------------CCC--eeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 393 EGLRKFGWIVPAYTM---------PAN------------AEN--VAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 393 ~~L~~~G~~v~~~~~---------~~~------------~~~--~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
+.|.+.|+++++... +.. ..+ .+++|++++. +++++++++|+++++.+
T Consensus 325 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 325 KLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp HHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 677788875544211 100 012 4689999974 88999999999988653
No 146
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=2.1e-23 Score=209.36 Aligned_cols=293 Identities=13% Similarity=0.074 Sum_probs=189.3
Q ss_pred HHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHH---HHHHcC
Q 010897 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFE 175 (498)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~---~~~~~g 175 (498)
++++++++++|.+. .+++++|++|+.+++.++..+. +++.|+++...|++... .+...|
T Consensus 51 ~l~~~la~~~~~~~-------~i~~~~G~~a~~~al~~~~~~g-----------d~~~vi~~~~~~~~~~~~~~~~~~~g 112 (357)
T 3lws_A 51 PFEQKFADVLGMDD-------AVFFPSGTMAQQVALRIWSDET-----------DNRTVAYHPLCHLEIHEQDGLKELHP 112 (357)
T ss_dssp HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHHH-----------TCCEEEECTTCHHHHSSTTHHHHHSS
T ss_pred HHHHHHHHHhCCCc-------EEEecCcHHHHHHHHHHHhhcC-----------CCcEEEecccceeeeeccchhhhccC
Confidence 45556888899854 5777889999998888876541 01278888888887654 456668
Q ss_pred CeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCc-ccccC---HHHHHHHHHHhhcccCCCceEEEecCccccc
Q 010897 176 VELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFI 251 (498)
Q Consensus 176 ~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~t-G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~ 251 (498)
++++.++.+ ++.+|+++|+++. ++++|++++|+||+ |.+.+ +++|.++|+++ |++||+|+||+...
T Consensus 113 ~~~~~v~~~--~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~ 182 (357)
T 3lws_A 113 IETILVGAA--DRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER------GIRLHLDGARLFEM 182 (357)
T ss_dssp CEEEECSCT--TSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHH
T ss_pred cEEEEecCC--CCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc------CCEEEEECchhhhh
Confidence 888877743 3679999999884 38999999999998 88764 88999999999 99999999987322
Q ss_pred ccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHH
Q 010897 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQ 331 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~ 331 (498)
..+...... .+. ..+|++..++||++.+|.| |+++. +++.+ +.+.......+... .+. .....+..++
T Consensus 183 ~~~~~~~~~-~~~-~~~d~~~~s~sK~~~~~~g-g~~~~-~~~~~-~~~~~~~~~~~~~~------~~~-~~~~~~~~~~ 250 (357)
T 3lws_A 183 LPYYEKTAA-EIA-GLFDSIYISFYKGLGGIAG-AILAG-PAAFC-QTARIWKRRYGGDL------ISL-YPYIVSADYY 250 (357)
T ss_dssp HHHHTCCHH-HHH-TTSSEEEEESSSTTCCSSC-EEEEE-CHHHH-HHHHHHHHHTTCCC------SCC-HHHHHHHHHH
T ss_pred hhhcCCChH-HHH-hcCCEEEEeccccCCCCce-EEEEc-CHHHH-HHHHHHHHHhcCCc------ccc-hHHHHHHHHH
Confidence 211111111 111 3467888999999877877 77764 33222 11110001111110 001 1122222233
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCC
Q 010897 332 FIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANA 411 (498)
Q Consensus 332 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~ 411 (498)
+.. +.+.+++..++++++.+.|++++++++...++..+++.++++.....+..++.+.|.++|+.+.....+.
T Consensus 251 l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~-- 323 (357)
T 3lws_A 251 YEL-----RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDK-- 323 (357)
T ss_dssp HHH-----HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEEC--
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccC--
Confidence 322 3344556678899999999999889885433467888888864211235688999999999876443221
Q ss_pred CCeeEEEEeecCCC---CHHHHHHHHHHHH
Q 010897 412 ENVAVLRVVVREDF---SRSLVERLISHIE 438 (498)
Q Consensus 412 ~~~~~lRv~v~~~~---t~~~~~~l~~~l~ 438 (498)
.+..++|++++..+ +.+++++.++.|.
T Consensus 324 ~~~~~~r~~i~~~~~~~~~~~l~~al~~l~ 353 (357)
T 3lws_A 324 DGYCSTEISVGDAYGELDQQTRDAGFARLR 353 (357)
T ss_dssp SSEEEEEEEBCTTGGGSCHHHHHHHHHHHH
T ss_pred CCceEEEEEecchhhhcCHHHHHHHHHHHH
Confidence 35678999997543 4444544444443
No 147
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.91 E-value=9.1e-23 Score=223.00 Aligned_cols=305 Identities=13% Similarity=0.080 Sum_probs=221.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCe
Q 010897 98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE 177 (498)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~ 177 (498)
.+.++.+++++|.+. ..++++|+++||..++.++..+ +++|+++.+.|.++..++...|++
T Consensus 208 ~~~ee~la~l~G~d~------~i~~~~Gtt~a~~~~i~al~~~-------------GD~Vlv~~~~h~s~~~~~~~~G~~ 268 (755)
T 2vyc_A 208 GESEKYAARVFGADR------SWSVVVGTSGSNRTIMQACMTD-------------NDVVVVDRNCHKSIEQGLMLTGAK 268 (755)
T ss_dssp HHHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHhCCCc------eEEECCcHHHHHHHHHHHhcCC-------------CCEEEECCCchHHHHHHHHHcCCE
Confidence 356677999999863 3677888889998888887442 579999999999999999999999
Q ss_pred eEEEEecCCcc----cc-----CHHHHHHHhhh--CCe--------EEEEeeccCCcccccCHHHHHHHHHHhhcccCCC
Q 010897 178 LKEVKLEEGYY----VM-----NPVKAVELVDE--NTI--------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238 (498)
Q Consensus 178 ~~~v~~~~~~~----~~-----d~~~L~~~i~~--~t~--------~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~ 238 (498)
++.++++.+++ .+ |+++|+++|++ +++ +|+++++ |++|.+.|+++|+++|+++ +
T Consensus 269 ~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~------~ 341 (755)
T 2vyc_A 269 PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKT------S 341 (755)
T ss_dssp EEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTT------C
T ss_pred EEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHc------C
Confidence 99998864322 35 99999999976 344 8888987 6899999999999999999 9
Q ss_pred ceEEEecCcccccccccCCCCccccCCCC--eeE------EEEcCCccCCCCCCeEEEEEeCCC-CCC-cccccccCccC
Q 010897 239 TPIHVDAASGGFIAPFLYPDLEWDFRLPL--VKS------INVSGHKYGLVYAGVGWVVWRTKD-DLP-DELVFHINYLG 308 (498)
Q Consensus 239 ~~l~vD~A~~g~~~~~~~~~~~~~~~~~~--~ds------i~~s~hK~l~~p~g~g~~~~~~~~-~l~-~~~~~~~~yl~ 308 (498)
+++|||+||+++. .| .+..+....+.+ +|+ ++.|+||++.++.++|++++++.. .+. ..+......+.
T Consensus 342 ~~livDeA~~~~~-~~-~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~ 419 (755)
T 2vyc_A 342 DRLHFDEAWYGYA-RF-NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHA 419 (755)
T ss_dssp SEEEEECTTCTTG-GG-CGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTS
T ss_pred CEEEEECcCchhc-cc-CcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhC
Confidence 9999999998643 12 111100000012 444 899999999888889999887651 111 01000001111
Q ss_pred CCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC---------eEEeeCCC--------
Q 010897 309 SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR---------FEILSKDV-------- 371 (498)
Q Consensus 309 ~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~---------~~~~~~~~-------- 371 (498)
.++.+...+.++.++++.+..+|..+++++..++++++++.|+++++ |+++.+..
T Consensus 420 --------s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (755)
T 2vyc_A 420 --------TTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGK 491 (755)
T ss_dssp --------CSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCC
T ss_pred --------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccccccc
Confidence 13444456677777888777776678899999999999999998877 77665421
Q ss_pred ----------------------------------------CccEEEEEecCC--------CCCCHHHHHHHHHhcCcEee
Q 010897 372 ----------------------------------------GVPLVAFSLKDS--------SAHTVFEISEGLRKFGWIVP 403 (498)
Q Consensus 372 ----------------------------------------~~~~v~f~~~~~--------~~~~~~~l~~~L~~~G~~v~ 403 (498)
....++|..++- .+++...+.+.|.++||.+.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e 571 (755)
T 2vyc_A 492 TYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPT 571 (755)
T ss_dssp EEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCS
T ss_pred ccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEe
Confidence 113567776531 14677899999999997652
Q ss_pred eecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 404 AYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 404 ~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
. .+.+.+|++++...|.+++++|+++|.++.+..+
T Consensus 572 ~-------~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 572 R-------TTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp E-------ECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred e-------cCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 2 1345689999988899999999999999987664
No 148
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.91 E-value=1.6e-23 Score=210.23 Aligned_cols=319 Identities=14% Similarity=0.108 Sum_probs=200.6
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
++|.+.+++.+.+..+.+ ...+. ..++++++++++|.+. .++++||++|+.+++.++..+-
T Consensus 27 ~~p~v~~ai~~~~~~~~~--~~~~~----~~~l~~~la~~~~~~~-------~i~~~~g~~a~~~a~~~~~~~g------ 87 (359)
T 3pj0_A 27 VLTEALQNIDDNLESDIY--GNGAV----IEDFETKIAKILGKQS-------AVFFPSGTMAQQIALRIWADRK------ 87 (359)
T ss_dssp HHHHHTTTSCTTCBCCBT--TBSHH----HHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHhhcccCcc--cCCHH----HHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHHhcC------
Confidence 456676666654433322 22233 3356667899999864 5777899999999988876541
Q ss_pred cCCCCCCcEEEEcCCchhHHHH---HHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCc-ccccCHHH
Q 010897 148 QGKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFEDVKL 223 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~t-G~~~~l~~ 223 (498)
++..|+++.+.|+.... .+...|++++.++.+ ++.+|+++|+++ .+++++|+++.++|++ |.+.|.++
T Consensus 88 -----~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~ 159 (359)
T 3pj0_A 88 -----ENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA--NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEE 159 (359)
T ss_dssp -----TCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT--TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHH
T ss_pred -----CCcEEEEeccceeeehhcchHHHhcCceEEecCCc--CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHH
Confidence 01246777788876543 235679998888873 378999999998 7789999999999888 68866555
Q ss_pred H---HHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCccc
Q 010897 224 L---HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (498)
Q Consensus 224 I---~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~ 300 (498)
+ .++|+++ |+++|+|++|..+...+..... ..+. ..+|+++++.||++.+|.| |+++ .+++.. +.+
T Consensus 160 l~~l~~~~~~~------~~~li~D~a~~~~~~~~~~~~~-~~~~-~~~d~~~~s~sK~~~~~~g-g~~~-~~~~l~-~~~ 228 (359)
T 3pj0_A 160 LEKISEYCHEQ------GISLHLDGARLWEITPFYQKSA-EEIC-ALFDSVYVSFYKGIGGIAG-AILA-GNDDFV-QEA 228 (359)
T ss_dssp HHHHHHHHHHH------TCEEEEEETTCGGGHHHHTCCH-HHHH-TTCSEEEEESSSTTCCSSC-EEEE-ECHHHH-HHH
T ss_pred HHHHHHHHHHc------CCEEEEECcchhcchhhhCCCH-HHhh-ccCCEEEEeccccCCCcce-EEEE-CCHHHH-HHH
Confidence 5 9999999 9999999998755422211111 1111 3568888899999888866 6555 443322 111
Q ss_pred ccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEe
Q 010897 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSL 380 (498)
Q Consensus 301 ~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (498)
.......+... .+. .....+..+++.. ..+.+++..++++++.+.|++++++++...++..+++.+++
T Consensus 229 ~~~~~~~~~~~------~~~-~~~~~a~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 296 (359)
T 3pj0_A 229 KIWKRRYGGDL------ISL-YPYILSADYYFEK-----RIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYF 296 (359)
T ss_dssp HHHHHHTTCCC------SCC-HHHHHHHHHHHHH-----HGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEE
T ss_pred HHHHHHhCCCc------chh-HHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEe
Confidence 11001111110 011 1122222233322 12455667788999999999998898863333678888888
Q ss_pred cCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCC---CHHHHHHHHHHH
Q 010897 381 KDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDF---SRSLVERLISHI 437 (498)
Q Consensus 381 ~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~---t~~~~~~l~~~l 437 (498)
+.....+..++.+.|.++|+.+.....+. ..+..++|++++..+ +.+++++.++.|
T Consensus 297 ~~~~~~~~~~l~~~l~~~GV~v~~g~~~~-~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l 355 (359)
T 3pj0_A 297 ENSADEIGAILTKIQDETGVGISGYLQEK-SADVCAFEVSVGDAFAEIPAKNLELVFRCL 355 (359)
T ss_dssp SSCHHHHHHHHHHHHHHHCEECCSCCEEE-ETTEEEEEEECCTTGGGSCHHHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHhcCcEecCCcccc-CCCceEEEEEecCccccCCHHHHHHHHHHH
Confidence 54322346789999999999875443222 245678999997544 344444333333
No 149
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.91 E-value=3.5e-23 Score=208.81 Aligned_cols=318 Identities=12% Similarity=0.093 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 010897 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ 148 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~ 148 (498)
.+++.+++.+.+..... ...+...++ ++.+++++|.+. +++++||++|+.+++.++...
T Consensus 15 ~~~v~~a~~~~~~~~~~--~~~~~~~~l----~~~la~~~~~~~-------~~~~~sGt~al~~al~~~~~~-------- 73 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHGQY--ILGPEVTEL----EDRLADFVGAKY-------CISCANGTDALQIVQMALGVG-------- 73 (367)
T ss_dssp HHHHHHHHHHHHHHCCC--SSCHHHHHH----HHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHHhcCCc--cCChHHHHH----HHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHhCCC--------
Confidence 45677777777765433 233444444 455888888863 899999999999998876211
Q ss_pred CCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHH
Q 010897 149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 228 (498)
Q Consensus 149 g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la 228 (498)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|+++++++|++|+ ++|++|...|+++|.++|
T Consensus 74 ----~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la 146 (367)
T 3nyt_A 74 ----PGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIA 146 (367)
T ss_dssp ----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred ----CcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHH
Confidence 1468999999999999999999999999999876689999999999988888775 788999999999999999
Q ss_pred HHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEc--CCccCCCCCCeEEEEEeCCCCCCcccccccCc
Q 010897 229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306 (498)
Q Consensus 229 ~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s--~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~y 306 (498)
+++ |+++|+|++|+.+.. + ... .+..-+ |.+++| +||++.++...|+++.++++.. ..+.....
T Consensus 147 ~~~------~~~li~D~a~~~g~~-~-~~~---~~~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~-~~~~~~~~- 212 (367)
T 3nyt_A 147 SKY------GIPVIEDAAQSFGAS-Y-KGK---RSCNLS-TVACTSFFPSAPLGCYGDGGAIFTNDDELA-TAIRQIAR- 212 (367)
T ss_dssp HHT------TCCBEEECTTTTTCE-E-TTE---ETTSSS-SEEEEECCTTSSSCCSSCCEEEEESCHHHH-HHHHHHTB-
T ss_pred HHc------CCEEEEECccccCCe-E-CCe---eccCCC-CEEEEECCCCCcCCCcCceeEEEeCCHHHH-HHHHHHHh-
Confidence 999 999999999985432 1 111 111111 555655 6999866334677776554321 11110000
Q ss_pred cCCC----CCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC----CccEEEE
Q 010897 307 LGSD----QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----GVPLVAF 378 (498)
Q Consensus 307 l~~~----~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----~~~~v~f 378 (498)
.+.. ....+.++.- ..+.+.+++..+ +.+.+..++..++++++.+.|++++ +.+...+. ...++.+
T Consensus 213 ~g~~~~~~~~~~g~~~~~---~~~~aa~~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~ 286 (367)
T 3nyt_A 213 HGQDRRYHHIRVGVNSRL---DTLQAAILLPKL--EIFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVYAQYTV 286 (367)
T ss_dssp TTEEETTEECSCCCBCCC---CHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCCSSEEE
T ss_pred cCCCcCceeeccCcCCCc---cHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceeeEEEEE
Confidence 0000 0001111222 122222233222 3456777888889999999999986 55433221 1223344
Q ss_pred EecCCCCCCHHHHHHHHHhcCcEeeeecC-CCC----C------------CCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 379 SLKDSSAHTVFEISEGLRKFGWIVPAYTM-PAN----A------------ENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 379 ~~~~~~~~~~~~l~~~L~~~G~~v~~~~~-~~~----~------------~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
.++ +..++.+.|.++|+.++.+.. |.. . .....+|+.+....|.+|++++++.|++
T Consensus 287 ~~~-----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 287 RMD-----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp ECS-----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred EeC-----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 432 567999999999997754332 111 0 0136899999999999999888777654
No 150
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.91 E-value=8.7e-23 Score=209.10 Aligned_cols=325 Identities=12% Similarity=0.046 Sum_probs=214.2
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
++++.+.+++.+........|....+..++++++.+++....+.+. ...+++|+|+++|+.+++.++.++
T Consensus 55 ~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~----~~~i~~t~g~~~al~~~~~~~~~~------ 124 (413)
T 3t18_A 55 IALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEG----YISAIATPGGTGAIRSAIFSYLDE------ 124 (413)
T ss_dssp CCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS----EEEEEEESHHHHHHHHHHHHHCCS------
T ss_pred CChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccc----cCcEEEcCccHHHHHHHHHHhcCC------
Confidence 3556777877664433333444455778888888888877665431 124999999999999988876432
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh----CCe-EEEEeec-cCCcccccC
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTI-CVAAILG-STLTGEFED 220 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~----~t~-~v~~~~~-~t~tG~~~~ 220 (498)
+++|+++.++|..+...++..|++++.+|+.++++.+|+++|++++++ +++ +|++++| +||||.+.|
T Consensus 125 -------gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~ 197 (413)
T 3t18_A 125 -------GDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLS 197 (413)
T ss_dssp -------SCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCC
T ss_pred -------CCEEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCC
Confidence 478999999999999999999999999999544478999999999986 677 6778888 999999988
Q ss_pred HHHHHHHH---H------HhhcccCCCceEEEecCcccccccccCCCCcc---cc-CC-CCe-eEEEEcCCccCC-CCCC
Q 010897 221 VKLLHDLL---T------KKNEETGWDTPIHVDAASGGFIAPFLYPDLEW---DF-RL-PLV-KSINVSGHKYGL-VYAG 284 (498)
Q Consensus 221 l~~I~~la---~------~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~---~~-~~-~~~-dsi~~s~hK~l~-~p~g 284 (498)
.+++.+++ + ++ |+++++|++|+++.. ....... .+ .+ ++. .++..+.+|.+. ++.+
T Consensus 198 ~~~l~~l~~~~~~~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r 269 (413)
T 3t18_A 198 DEEWDEVITFLKEKAEDKDK------KITLIVDVAYLEFAG--DGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLR 269 (413)
T ss_dssp HHHHHHHHHHHHHHTTSTTC------EEEEEEECTTGGGSS--SSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGGGC
T ss_pred HHHHHHHHHHHHHHhhccCC------cEEEEEecccccccC--ChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcCcC
Confidence 77666554 4 78 999999999988752 1111111 11 11 122 356678999876 6777
Q ss_pred eEEEEEe--CCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHH-------HHHHHHHHHHHHHHHH
Q 010897 285 VGWVVWR--TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG-------YKNIMENCMGNARALR 355 (498)
Q Consensus 285 ~g~~~~~--~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g-------~~~~~~~~~~~a~~l~ 355 (498)
+||++.. +++.. +.+.....+.. . ++-.....+++.++...+.... .++..++..++++++.
T Consensus 270 iG~~~~~~~~~~~~-~~~~~~~~~~~-------~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 340 (413)
T 3t18_A 270 SGAAVGISSSKEII-EEFEASLAHSA-------R-CNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFV 340 (413)
T ss_dssp CEEEEEEESCHHHH-HHHHHHHHHHH-------H-HHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCHHHH-HHHHHHHHHhh-------h-ccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999863 32221 11111000000 0 0000123344555555554332 2345566777888899
Q ss_pred HHHhcCCCeEEeeCCCCccEEEE-EecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHH
Q 010897 356 EGLEKTGRFEILSKDVGVPLVAF-SLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 356 ~~L~~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
+.|++++ +++..+ ..+++.| .+ .+..++.+.|.++|+.+... ..++|+++... +.+++ +
T Consensus 341 ~~l~~~g-~~~~~~--~~~~~~~~~~-----~~~~~~~~~l~~~gv~v~~g--------~~~iRis~~~~-~~~~~---l 400 (413)
T 3t18_A 341 TAAKENK-LTMIPY--FGGFFTFIPT-----DKAFDIVKDLEKENIFTIPS--------AKGIRVAICGV-GEEKI---P 400 (413)
T ss_dssp HHHHHTT-CCCBCC--CSSSCEEEEC-----SCHHHHHHHHHHTTEECEEC--------SSEEEECTTTS-CGGGH---H
T ss_pred HHHHHcC-CCccCC--CceEEEEeCC-----CCHHHHHHHHHhCCEEEecC--------CCceEEEEeeC-CHHHH---H
Confidence 9999884 776644 3444333 33 35778999999999887542 35699998743 44444 6
Q ss_pred HHHHHHHHHHH
Q 010897 435 SHIEEVLKEIE 445 (498)
Q Consensus 435 ~~l~~~l~~l~ 445 (498)
+.|.++++++.
T Consensus 401 ~~l~~~l~~~~ 411 (413)
T 3t18_A 401 KLVQRLAFYTN 411 (413)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 67777776654
No 151
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.90 E-value=2e-22 Score=208.22 Aligned_cols=337 Identities=12% Similarity=0.015 Sum_probs=209.8
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
..+++.+++.+++....+ ...+... ++++.+++++|.+. .+++++|++|+.+++.++...+...
T Consensus 41 ~~~~~~~a~~~~~~~~~~--~~~~~~~----~l~~~la~~~g~~~-------~i~~~sGt~a~~~al~~l~~~~~~~--- 104 (437)
T 3bb8_A 41 IGTKELQLMVEASLDGWL--TTGRFND----AFEKKLGEYLGVPY-------VLTTTSGSSANLLALTALTSPKLGV--- 104 (437)
T ss_dssp CCHHHHHHHHHHHHHCCC--BSCHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCGGGGG---
T ss_pred CCHHHHHHHHHHHHcCCc--CCChHHH----HHHHHHHHHHCCCc-------EEEeCCHHHHHHHHHHHhhhccccc---
Confidence 456777888777765332 2233333 45566888898863 7888999999999888762100000
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHH
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL 227 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~l 227 (498)
.+. ..+++|+++.++|.++..+++..|++++.++++++++.+|+++|+++++++|++|++++ ++|...|+++|.++
T Consensus 105 ~~~-~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l 180 (437)
T 3bb8_A 105 RAL-KPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAH---TLGNLFDLAEVRRV 180 (437)
T ss_dssp GSC-CTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHH
T ss_pred ccC-CCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCHHHHHHhcCCCCeEEEEeC---CCCChhcHHHHHHH
Confidence 000 12468999999999999999999999999999864588999999999998899888875 46778999999999
Q ss_pred HHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEc---CCccCCCCCCeEEEEEeCCCCCCccccccc
Q 010897 228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS---GHKYGLVYAGVGWVVWRTKDDLPDELVFHI 304 (498)
Q Consensus 228 a~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s---~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~ 304 (498)
|+++ |+++|+|+||+.+..+ . .. .++ ...|++..+ +||+ ++...|+++.+++ .+........
T Consensus 181 ~~~~------~~~li~D~a~~~g~~~--~--~~-~~~-~~~d~~~~s~~~~k~l--~~g~gg~~~~~~~-~~~~~~~~~~ 245 (437)
T 3bb8_A 181 ADKY------NLWLIEDCCDALGSTY--D--GK-MAG-TFGDIGTVSFYPAKHI--TMGEGGAVFTQSA-ELKSIIESFR 245 (437)
T ss_dssp HHHH------TCEEEEECTTCTTCEE--T--TE-ETT-SSSSEEEEECSTTSSS--CCSSCEEEEESCH-HHHHHHHHHH
T ss_pred HHHc------CCEEEEECccccCceE--C--Ce-ecc-cccCEEEEECcCCcCC--CCCCeEEEEeCCH-HHHHHHHHHH
Confidence 9999 9999999999855421 1 11 111 114554444 4554 2233466665432 2211100000
Q ss_pred CccCC---------------------CC----CCcc--ccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010897 305 NYLGS---------------------DQ----PTFT--LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREG 357 (498)
Q Consensus 305 ~yl~~---------------------~~----~~~~--l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~ 357 (498)
.+... .. ..++ ..+.......+...+++..+ +.+.+.+++..++++++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~~~~~~~~~~~~~~~l~~~ 323 (437)
T 3bb8_A 246 DWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQL--ERIEEFVEKRKANFKYLKDA 323 (437)
T ss_dssp BTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 01000 00 0000 00111001122222333332 23356667778899999999
Q ss_pred HhcCCCeEEeeCCC-----CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC-----CC---------------
Q 010897 358 LEKTGRFEILSKDV-----GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN-----AE--------------- 412 (498)
Q Consensus 358 L~~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~-----~~--------------- 412 (498)
|++++++.+++... ....+.+.++.+.+.+..++.+.|.++|+.++.+..++. ..
T Consensus 324 L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 403 (437)
T 3bb8_A 324 LQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDR 403 (437)
T ss_dssp GGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHH
T ss_pred hhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHH
Confidence 99987666654211 111223333212235778999999999998875432210 00
Q ss_pred -CeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 413 -NVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 413 -~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
....+|++++..+|.++++++++.|++++
T Consensus 404 ~~~~~lrl~~~~~~t~~di~~i~~~l~~~~ 433 (437)
T 3bb8_A 404 IMNQTFWIGIYPGLTHDHLDYVVSKFEEFF 433 (437)
T ss_dssp HHHHEEEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred HhcCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 02369999999999999999999988765
No 152
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.90 E-value=7.3e-23 Score=210.31 Aligned_cols=330 Identities=12% Similarity=0.035 Sum_probs=213.3
Q ss_pred CChHHHHHHHHHHhccC-CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~ 145 (498)
++.+.+.+++.+.+..+ ...|....+..++++.+.+++....+.+.+. +...+++|+|+++|+.+++..+..-
T Consensus 67 ~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~~~i~~t~G~t~al~~~~~~~~~~----- 140 (420)
T 4f4e_A 67 PLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAA-GRVVTAQALGGTGALKIGADFLRTL----- 140 (420)
T ss_dssp CCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEEEEEEEHHHHHHHHHHHHHHHH-----
T ss_pred cCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCcccccc-CceEEEECCccHHHHHHHHHHHHHh-----
Confidence 34478999888888763 3345555677788888777776544321011 0014899999999999885432211
Q ss_pred HhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEe-cCCccccCHHHHHHHhh---hCCeEEEEeeccCCcccc---
Q 010897 146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEF--- 218 (498)
Q Consensus 146 ~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~L~~~i~---~~t~~v~~~~~~t~tG~~--- 218 (498)
..+++|++++++|..+...++..|++++.+|+ +++++.+|++.|++.++ +++++|++++++||||.+
T Consensus 141 ------~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~ 214 (420)
T 4f4e_A 141 ------NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLND 214 (420)
T ss_dssp ------CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCH
T ss_pred ------CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCH
Confidence 01468999999999999999999999999998 34458899999999998 678899999999999998
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc---c-CCCCeeEEEEcCCccCC-CCCCeEEEEEeCC
Q 010897 219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD---F-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTK 293 (498)
Q Consensus 219 ~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~---~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~ 293 (498)
+++++|.++|+++ |+++++|++|+++... ....... + .....+.+..|.+|.++ .+.++||++....
T Consensus 215 ~~l~~i~~~~~~~------~~~li~De~y~~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~ 286 (420)
T 4f4e_A 215 AQWAQVVEVVKAR------RLVPFLDIAYQGFGES--IEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITD 286 (420)
T ss_dssp HHHHHHHHHHHHH------TCEEEEEESCTTSSSC--TTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECS
T ss_pred HHHHHHHHHHHHC------CcEEEEccccccccCC--cchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcC
Confidence 4567899999999 9999999999887531 1000001 1 12335667788899876 5777999875321
Q ss_pred -CCCCccccccc-CccCCCCCCccccCCCchHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHHhcC---CC
Q 010897 294 -DDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-----GFEGYKNIMENCMGNARALREGLEKT---GR 363 (498)
Q Consensus 294 -~~l~~~~~~~~-~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~---~~ 363 (498)
..+...+.... .+.... . .+.+.....+....+..- ..+.+++..++..++++++.+.|+++ ++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 360 (420)
T 4f4e_A 287 SKDEAARVLSQLKRVIRTN-----Y-SNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERD 360 (420)
T ss_dssp SHHHHHHHHHHHHHHHHTT-----T-SSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CHHHHHHHHHHHHHHHhcc-----c-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 11101000000 000000 0 011111111111222111 12345777788888999999999987 34
Q ss_pred eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 364 FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+.+..+ ..++++|. ..+...+.+.|.++|+.+... .|+++. ..+.++++++++.|++++
T Consensus 361 ~~~~~~--~~g~~~~~-----~~~~~~~~~~l~~~gI~v~~~-----------~Ris~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 361 FSFINA--QRGMFSYS-----GLTSAQVDRLREEFGIYAVST-----------GRICVA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp CTHHHH--SCSSEEEC-----CCCHHHHHHHHHHHCEECCTT-----------SEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred ceeECC--CccEEEEe-----CCCHHHHHHHHHhCCEEecCC-----------CeEEEe-cCCHHHHHHHHHHHHHHh
Confidence 655443 23444441 134567778888899875421 299985 347788999999888775
No 153
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.90 E-value=2e-22 Score=207.40 Aligned_cols=314 Identities=15% Similarity=0.052 Sum_probs=205.5
Q ss_pred CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHH--HHHHHHHHHHHHHHHhcCC--C---CCCcEEEE
Q 010897 87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM--LAGLAFKRKWQQKRKEQGK--P---YDKPNIVT 159 (498)
Q Consensus 87 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~--la~~a~~~~~~~~~~~~g~--~---~~~~~Iv~ 159 (498)
|....+..++++. ++++++++++ .+++|+|+++++. +++.++.+.. .|. + ..+++|++
T Consensus 74 Y~~~~g~~~lr~~----ia~~~~~~~~-----~i~~t~G~~~al~~~~~~~~l~~~~------~g~~~~~~~~~gd~V~v 138 (427)
T 3ppl_A 74 YGGLDGIVDIRQI----WADLLGVPVE-----QVLAGDASSLNIMFDVISWSYIFGN------NDSVQPWSKEETVKWIC 138 (427)
T ss_dssp SCCSSCCHHHHHH----HHHHHTSCGG-----GEEECSSCHHHHHHHHHHHHHHHCC------TTCSSCGGGSSCCEEEE
T ss_pred CCCCCCcHHHHHH----HHHHhCCCcc-----eEEEeCCcHHHHHHHHHHHHHhccC------CcccccccCCCCCEEEE
Confidence 3333455555555 6666777642 4999999999994 6666654300 000 0 01468999
Q ss_pred cCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhh-hCCeEEEEe-eccCCcccccCHH---HHHHHH-HHhhc
Q 010897 160 GANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAI-LGSTLTGEFEDVK---LLHDLL-TKKNE 233 (498)
Q Consensus 160 s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~-~~t~~v~~~-~~~t~tG~~~~l~---~I~~la-~~~~~ 233 (498)
+.++|..+...++..|++++.+|++++ + +|+++|+++++ +++++|+++ +++||||.+.|.+ +|.++| +++
T Consensus 139 ~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~-- 214 (427)
T 3ppl_A 139 PVPGYDRHFSITERFGFEMISVPMNED-G-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP-- 214 (427)
T ss_dssp EESCCHHHHHHHHHTTCEEEEEEEETT-E-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST--
T ss_pred cCCCcHHHHHHHHHcCCEEEEeCCCCC-C-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC--
Confidence 999999999999999999999999875 3 99999999995 578888765 7899999998877 788888 889
Q ss_pred ccCCCceEEEecCcccccccccCCC-Ccccc-------CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccC
Q 010897 234 ETGWDTPIHVDAASGGFIAPFLYPD-LEWDF-------RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305 (498)
Q Consensus 234 ~~~~~~~l~vD~A~~g~~~~~~~~~-~~~~~-------~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~ 305 (498)
|++||+|++|+.+.. .... ....+ +....+.+..+.+|+++++.++||++.+. +.. ..+.....
T Consensus 215 ----~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~-~l~-~~~~~~~~ 286 (427)
T 3ppl_A 215 ----DFRVVWDNAYAVHTL--TDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA-ENR-KWYTGHAG 286 (427)
T ss_dssp ----TCEEEEECTTTTCBS--SSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH-HHH-HHHHHHHH
T ss_pred ----CCEEEEECCCccccc--CCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH-HHH-HHHHHHhh
Confidence 999999999998542 1111 00011 13346777889999988889999987542 111 11110000
Q ss_pred ccCCCCCCccccCCCchHHHHHHHHHHHHhcH-----HHHHHHHHHHHHHHHHHHHHHh----cCCCeEEeeCCCCccEE
Q 010897 306 YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-----EGYKNIMENCMGNARALREGLE----KTGRFEILSKDVGVPLV 376 (498)
Q Consensus 306 yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~----~~~~~~~~~~~~~~~~v 376 (498)
+.. .+ ...+.|.++...+.. +.+++..+...+.++.+.+.|. .++++.+..+. ...++
T Consensus 287 ~~~---------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-~g~~~ 353 (427)
T 3ppl_A 287 IRG---------IG---PNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-GGYFI 353 (427)
T ss_dssp HHC---------SC---CCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-BSSCE
T ss_pred ccc---------CC---CCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-ccEEE
Confidence 000 11 122334444444433 2233444444555555555554 34456665443 56777
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCcEeee-e-cCCC-CCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 377 AFSLKDSSAHTVFEISEGLRKFGWIVPA-Y-TMPA-NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 377 ~f~~~~~~~~~~~~l~~~L~~~G~~v~~-~-~~~~-~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.+++++. +..++.+.|.++|+.+.. . +++. ......++|+++... +.++++++++.|+++++++
T Consensus 354 ~~~~~~~---~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 354 SLDVVPG---TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp EEECSTT---CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred EEECCcc---hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 7888542 677899999999998754 1 1211 112467899999644 8899999999999988765
No 154
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.90 E-value=4.6e-23 Score=209.84 Aligned_cols=327 Identities=12% Similarity=0.019 Sum_probs=210.2
Q ss_pred CChHHHHHHHHH-HhccC-CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMA-SINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (498)
Q Consensus 67 ~~~~~~~~~l~~-~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~ 144 (498)
+.++.+.+++.+ ++... ...|....+..++++++.+++....+.+.+. +...+++|+|+++|+.+++..+..- .
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-~~~~i~~t~g~~~a~~~~~~~~~~~-~-- 119 (397)
T 3fsl_A 44 PQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQ-QRVATIQTLGGSGALKVGADFLKRY-F-- 119 (397)
T ss_dssp CCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEEEEEESHHHHHHHHHHHHHHHH-C--
T ss_pred cCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccc-cceEEEEcCCcHHHHHHHHHHHHhc-C--
Confidence 344789999988 87763 3345555667788888777765544321010 0013899999999998886433211 0
Q ss_pred HHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec-CCccccCHHHHHHHhh---hCCeEEEEeeccCCcccc--
Q 010897 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEF-- 218 (498)
Q Consensus 145 ~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~L~~~i~---~~t~~v~~~~~~t~tG~~-- 218 (498)
.+++|+++.++|..+...++..|++++.+++. ++++.+|+++|+++++ ++++++++++++||||.+
T Consensus 120 --------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~ 191 (397)
T 3fsl_A 120 --------PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLT 191 (397)
T ss_dssp --------TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCC
T ss_pred --------CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCC
Confidence 14689999999999999999999999999983 3458899999999998 567888899999999999
Q ss_pred -cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCc--ccc-CCCCeeEEEEcCCccCC-CCCCeEEEEEeCC
Q 010897 219 -EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTK 293 (498)
Q Consensus 219 -~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~--~~~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~ 293 (498)
+++++|.++|+++ |+++++|++|+++.... ..... ..+ .....+.+..+.+|.++ .+.++||++....
T Consensus 192 ~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~ 264 (397)
T 3fsl_A 192 NDQWDAVIEILKAR------ELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCE 264 (397)
T ss_dssp HHHHHHHHHHHHHT------TCEEEEEESCTTSSSCT-TGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECS
T ss_pred HHHHHHHHHHHHhC------CEEEEEecCchhhccCc-ccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecC
Confidence 5566899999999 99999999999875310 00000 011 12234566678889775 5777999986422
Q ss_pred --CCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc--------HHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 010897 294 --DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEGYKNIMENCMGNARALREGLEKTG- 362 (498)
Q Consensus 294 --~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~- 362 (498)
+.+.........+..... ++. ..+++.++...+. .+.+++..++..++++++.+.|++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 335 (397)
T 3fsl_A 265 DAEAAGRVLGQLKATVRRNY------SSP---PNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMP 335 (397)
T ss_dssp SHHHHHHHHHHHHHHHHTTT------SSC---CSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHhcc------CCC---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111000000000000000 011 1122222222222 34567778888889999999999874
Q ss_pred --CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 363 --RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 363 --~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
++++..+. .+++.| + ..+...+.+.|.++|+.+... + |+++. ..+.++++++++.|+++
T Consensus 336 ~~~~~~~~~~--~~~~~~-~----~~~~~~~~~~l~~~gi~v~~g-------~----Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 336 ERNFDYLLNQ--RGMFSY-T----GLSAAQVDRLREEFGVYLIAS-------G----RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp TSCCTHHHHC--CSSEEE-C----CCCHHHHHHHHHTTCEECCTT-------C----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred CCCceeecCC--ceEEEe-c----CCCHHHHHHHHHhCCEEECCC-------C----eEEEE-ecCHhhHHHHHHHHHhh
Confidence 46554432 333333 1 134556778888999876421 1 99985 34667899888888765
No 155
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.90 E-value=8.2e-22 Score=200.78 Aligned_cols=318 Identities=11% Similarity=-0.010 Sum_probs=211.7
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
++|.+.+++.+.+.........+ ......++++.+++++|.+ .+++|+||++|+.+++.+++..+..
T Consensus 57 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~gg~~a~~~al~~~~~~~~~---- 123 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKLIHCSNLF--WNRPQMELAELLSKNTFGG-------KVFFANTGTEANEAAIKIARKYGKK---- 123 (397)
T ss_dssp TCHHHHHHHHHHHHHCSCCCTTS--EEHHHHHHHHHHHHTTTSC-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhcccCcccc--CCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc----
Confidence 46788888888876532211122 2345667888899998843 2899999999999998877542111
Q ss_pred cCCCCCCcEEEEcCC-chhHHHHHHHHcCCe------------eEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 148 QGKPYDKPNIVTGAN-VQVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~-~h~~~~~~~~~~g~~------------~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
|.+ ++++|++.++ .|.++..+++..|.+ ++.++. .|+++|++++++++++|+++.++||
T Consensus 124 -~~~-~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~np 195 (397)
T 2ord_A 124 -KSE-KKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSEDVCAVFLEPIQGE 195 (397)
T ss_dssp -HCT-TCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCTTEEEEEECSEECT
T ss_pred -CCC-CCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhcCeEEEEEecccCC
Confidence 000 1245666554 456666677777775 555553 3899999999988999999999999
Q ss_pred ccc----ccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcc-ccCCCCeeEEEEcCCccCCCCCCeEEEE
Q 010897 215 TGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGWVV 289 (498)
Q Consensus 215 tG~----~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~-~~~~~~~dsi~~s~hK~l~~p~g~g~~~ 289 (498)
||. .+++++|.++|+++ |+++++|++|+++.. ....... .++. ..|.+++ +|++.++.++|+++
T Consensus 196 tG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~~~ 264 (397)
T 2ord_A 196 SGIVPATKEFLEEARKLCDEY------DALLVFDEVQCGMGR--TGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGAVI 264 (397)
T ss_dssp TTCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--CccchhhhhhCC-CCCeeee--ccccCCCcCeEEEE
Confidence 999 37899999999999 999999999986531 1111110 1121 2565544 69888778899999
Q ss_pred EeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeE
Q 010897 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GRFE 365 (498)
Q Consensus 290 ~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~ 365 (498)
.+++ .. .+ ... . ...+ ++.+.....+..++++.+.. .+..++..++++++.+.|+++ +.+.
T Consensus 265 ~~~~-~~--~l--~~~---~--~~~~--~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 329 (397)
T 2ord_A 265 VNER-AN--VL--EPG---D--HGTT--FGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVA 329 (397)
T ss_dssp ECST-TC--CC--CTT---S--SCCS--STTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred EchH-hc--cc--CCC---C--cCCC--CCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 7653 22 21 110 0 0111 22233344445555555443 356677778888888888765 3222
Q ss_pred EeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
...+ ..+++.|.+++ ..+..++.++|.++|+.+... +..++|+++....+.++++++++.|++++++
T Consensus 330 ~~~~--~g~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~-------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 330 DVRG--MGLMIGIQFRE--EVSNREVATKCFENKLLVVPA-------GNNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp EEEE--ETTEEEEEECT--TSCHHHHHHHHHHTTEECEEE-------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEE--EeEEEEEEECC--hHHHHHHHHHHHHCCCEEccC-------CCCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 1222 45788888853 246789999999999887543 1357999987677999999999999888753
No 156
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.90 E-value=1.3e-22 Score=201.89 Aligned_cols=297 Identities=14% Similarity=0.094 Sum_probs=205.6
Q ss_pred CChHHHHHHHHHHhccC-CCCCcCCcchHHHHHHHHHHHHHHcC---CCCCCCCCcceeeecChhHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFN---TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g---~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~ 142 (498)
++++.+.+++.+.+... ...|.. ++..+ +++.++++++ .+. ..+++|+|+++++.+++.++
T Consensus 32 ~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~----lr~~la~~~~~~~~~~-----~~v~~~~G~~~al~~~~~~~----- 96 (335)
T 1uu1_A 32 PFPEDLVDEVFRRLNSDALRIYYD-SPDEE----LIEKILSYLDTDFLSK-----NNVSVGNGADEIIYVMMLMF----- 96 (335)
T ss_dssp CCCHHHHHHHHHTCCGGGGGSCCC-SSCHH----HHHHHHHHHTCSSCCG-----GGEEEESSHHHHHHHHHHHS-----
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCC-CchHH----HHHHHHHHcCCCCCCH-----HHEEEcCChHHHHHHHHHHh-----
Confidence 45688889888887432 222222 23344 4455777777 543 24999999999998888776
Q ss_pred HHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHH
Q 010897 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK 222 (498)
Q Consensus 143 ~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~ 222 (498)
+++|+++ ++|..+...++..|++++.+|++++ +.+|+++| +++++|++++|+||||.+.|.+
T Consensus 97 -----------gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~ 158 (335)
T 1uu1_A 97 -----------DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKD-LRIPEVNV-----GEGDVVFIPNPNNPTGHVFERE 158 (335)
T ss_dssp -----------SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTT-SCCCCCCC-----CTTEEEEEESSCTTTCCCCCHH
T ss_pred -----------CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCC-CCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHH
Confidence 1579999 9999999999999999999998754 77888877 5789999999999999999999
Q ss_pred HHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccc
Q 010897 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELV 301 (498)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~ 301 (498)
+|.++++.+ + ++++|++|+++.. .+-.. .+.....+.+..+.+|+++ ++.++|+++.+ ++.. +.+.
T Consensus 159 ~l~~l~~~~------~-~li~De~~~~~~~---~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~-~~l~ 225 (335)
T 1uu1_A 159 EIERILKTG------A-FVALDEAYYEFHG---ESYVD-FLKKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFI-DAYN 225 (335)
T ss_dssp HHHHHHHTT------C-EEEEECTTHHHHC---CCCGG-GGGTCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHH-HHHH
T ss_pred HHHHHHHhC------C-EEEEECcchhhcc---hhHHH-HhhhCCCEEEEecchhhcCCcccCeEEEEeC-HHHH-HHHH
Confidence 999999999 9 9999999987541 11111 1122235677889999875 55668999874 2221 1111
Q ss_pred cccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEec
Q 010897 302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381 (498)
Q Consensus 302 ~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (498)
... .. ++.+.....++..++.. .+.+.+..++..++++++.+.|++++ +++.+ + ..+++.+.++
T Consensus 226 ~~~-------~~----~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~-~~~~~~~~~~ 289 (335)
T 1uu1_A 226 RVR-------LP----FNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMG-YRITD-S-RGNFVFVFME 289 (335)
T ss_dssp HHS-------CT----TCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCC-C-CSSEEEEECC
T ss_pred Hhc-------CC----CCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCC-cEEcC-C-CCeEEEEECC
Confidence 100 01 12222222223333332 23567788888899999999999874 66542 2 4677777774
Q ss_pred CCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 382 DSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 382 ~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
+ .+..++.++|.++|+.+.. ...++|++++ +.++++++++.|++
T Consensus 290 ~---~~~~~~~~~l~~~gi~v~~--------~~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 290 K---EEKERLLEHLRTKNVAVRS--------FREGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp T---HHHHHHHHHHHHHTEEEEE--------ETTEEEEECC---CHHHHHHHHHHHHC
T ss_pred C---CCHHHHHHHHHHCCEEEEE--------CCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 2 4567899999999988754 1246999986 45777777776654
No 157
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.90 E-value=5.3e-22 Score=201.95 Aligned_cols=318 Identities=13% Similarity=0.029 Sum_probs=209.3
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
++|.+.+++.+.+.........+ ......++++++++++|.+. ..+++|+|+++|+.+++.+++.. .
T Consensus 62 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~~a~~~al~~~~~~-~----- 128 (395)
T 1vef_A 62 GNPEVVEAVKRQAETLMAMPQTL--PTPMRGEFYRTLTAILPPEL-----NRVFPVNSGTEANEAALKFARAH-T----- 128 (395)
T ss_dssp TCHHHHHHHHHHHHHCCCCCTTS--CCHHHHHHHHHHHHTSCTTE-----EEEEEESSHHHHHHHHHHHHHHH-H-----
T ss_pred CCHHHHHHHHHHHHhCCCCcccc--CCHHHHHHHHHHHHhcCCCc-----CEEEEcCcHHHHHHHHHHHHHHH-h-----
Confidence 66888888888876533211122 23456678888999997643 23899999999999998876421 0
Q ss_pred cCCCCCCcEEEEcCCc-hhHHHHHHHHcCCeeE---EEEecCCcc---ccCHHHHHHHhhhCCeEEEEeeccCCcccccC
Q 010897 148 QGKPYDKPNIVTGANV-QVCWEKFARYFEVELK---EVKLEEGYY---VMNPVKAVELVDENTICVAAILGSTLTGEFED 220 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~-h~~~~~~~~~~g~~~~---~v~~~~~~~---~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~ 220 (498)
.+++|+++++. |.++..+++..|.+.. .+|+..+.. ..|+++|++++++++++|+++.++++||.+.|
T Consensus 129 -----~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 203 (395)
T 1vef_A 129 -----GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPA 203 (395)
T ss_dssp -----SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEEC
T ss_pred -----CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCC
Confidence 13567766665 4566666677776521 112111100 15899999999988888887777888999877
Q ss_pred ----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCC
Q 010897 221 ----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD 295 (498)
Q Consensus 221 ----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~ 295 (498)
+++|.++|+++ |+++|+|++|+++.. .......+. +. ..|++ +.+|++.++.++|+++.+++
T Consensus 204 ~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~-~~d~~--s~sK~~~~g~~~G~~~~~~~-- 270 (395)
T 1vef_A 204 TPEFLRAAREITQEK------GALLILDEIQTGMGR--TGKRFAFEHFGI-VPDIL--TLAKALGGGVPLGVAVMREE-- 270 (395)
T ss_dssp CHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCSEE--EECGGGGTTSSCEEEEEEHH--
T ss_pred CHHHHHHHHHHHHHc------CCEEEEEecccCCcc--CCchhHhhhcCC-CCCEE--EEcccccCCCceEEEEehHH--
Confidence 99999999999 999999999996421 111111111 21 25666 44899888889999998753
Q ss_pred CCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC--eEEeeCCCCc
Q 010897 296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR--FEILSKDVGV 373 (498)
Q Consensus 296 l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~--~~~~~~~~~~ 373 (498)
+.+.+.. +. ....++.+.....++.++++.+.. .+..++..++++++.+.|++++. +.... + ..
T Consensus 271 ~~~~l~~-----~~----~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~-~g 336 (395)
T 1vef_A 271 VARSMPK-----GG----HGTTFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVR-G-MG 336 (395)
T ss_dssp HHHTSCT-----TS----SCCSSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE-E-ET
T ss_pred HHhhhcc-----CC----cCCCcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEE-E-EE
Confidence 2121111 00 011122333444445555655433 34667788899999999998763 11111 1 45
Q ss_pred cEEEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 374 PLVAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 374 ~~v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+++.|.++. +..++.++|. ++|+.+... +..++|+++....+.++++++++.|++++
T Consensus 337 ~~~~~~~~~----~~~~l~~~l~~~~gi~v~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 337 LMVGLELKE----KAAPYIARLEKEHRVLALQA-------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp TEEEEEESS----CSHHHHHHHHHHHCEECEES-------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcC----hHHHHHHHHHHHCCeEEecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 788888853 2468999999 999876542 24579999877789999999999888765
No 158
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.90 E-value=1.3e-21 Score=201.62 Aligned_cols=356 Identities=10% Similarity=0.018 Sum_probs=224.1
Q ss_pred HHHHHHHHHHhhh-ccCCCCCcccccccC-CChHHHHHHHHHHhcc-----CCCCCcCCcchHHHHHHHHHHHHHHcCCC
Q 010897 39 KEAAYQVINDELM-LDGNPRLNLASFVTT-WMEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTP 111 (498)
Q Consensus 39 ~~~~~~~~~~~~~-~~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~-----n~~~~~~~~~~~~le~~~~~~la~l~g~~ 111 (498)
.+.+.+....... .++.+.++|+...+. +.+|.+.+++.+++.. ....|....+..++++++.+|+.+.++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~ 118 (432)
T 3ei9_A 39 FPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG 118 (432)
T ss_dssp HHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC
Confidence 4444444433222 233444566665544 3567788888877763 22234444566888888888877544544
Q ss_pred CCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCC------------eeE
Q 010897 112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV------------ELK 179 (498)
Q Consensus 112 ~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~------------~~~ 179 (498)
. ..+++|+|+++++.+ +.++.++ ++.|++++++|.++...++..|. +++
T Consensus 119 ~-----~~i~~t~G~~~al~~-l~~l~~~-------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 179 (432)
T 3ei9_A 119 D-----DDVFVSDGAKCDISR-LQVMFGS-------------NVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIE 179 (432)
T ss_dssp G-----GGEEEESCHHHHHHH-HHHHHCT-------------TCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCE
T ss_pred c-----ceEEECCChHHHHHH-HHHHcCC-------------CCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceE
Confidence 3 349999999999875 3433221 46899999999999999999884 688
Q ss_pred EEEecCC-ccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCccccccccc
Q 010897 180 EVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255 (498)
Q Consensus 180 ~v~~~~~-~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~ 255 (498)
.++++++ ++..|+++ .+++++|++++|+||||.+.+ +++|.++|+++ |+++++|++|++++..-.
T Consensus 180 ~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~------~~~li~Dea~~~~~~~~~ 248 (432)
T 3ei9_A 180 YMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN------GSIIVYDSAYAMYMSDDN 248 (432)
T ss_dssp EEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCSSC
T ss_pred EeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc------CcEEEEccchHhhccCCC
Confidence 8888642 24455432 356889999999999999854 66777779999 999999999998753210
Q ss_pred CCCCcccc-CCCCeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHH
Q 010897 256 YPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333 (498)
Q Consensus 256 ~~~~~~~~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~ 333 (498)
..... .+ .....+++..+.+|.++ ++.++|+++.++............. +... ..... ++ ...+++.+++.
T Consensus 249 ~~~~~-~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~---~~~~~~~a~~~ 321 (432)
T 3ei9_A 249 PRSIF-EIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKD-FNRI-ICTCF-NG---ASNISQAGALA 321 (432)
T ss_dssp CSSGG-GSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHH-HHHH-HHHSC-CC---SCHHHHHHHHH
T ss_pred CCChh-hcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHH-HHHH-hcccc-CC---CCHHHHHHHHH
Confidence 00110 11 12345678889999875 7788999987654210000000000 0000 00000 11 22344555555
Q ss_pred HhcH---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhc-CcEeeeecCCC
Q 010897 334 RLGF---EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKF-GWIVPAYTMPA 409 (498)
Q Consensus 334 ~lg~---~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~-G~~v~~~~~~~ 409 (498)
.+.. +.+.+..++..++++++.+.|++++ +++..+. ..+++.+.++ +.+..+++++|.++ |+.+.......
T Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ll~~~gv~v~~g~~f~ 396 (432)
T 3ei9_A 322 CLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG-YDVYGGK-NAPYVWVHFP---NQSSWDVFAEILEKTHVVTTPGSGFG 396 (432)
T ss_dssp HSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEECS-SSSEEEEECT---TSCHHHHHHHHHHHHCEECEEGGGGC
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC-ceecCCC-cceEEEEECC---CCCHHHHHHHHHHHCCEEEeCchHhC
Confidence 5543 4457788888899999999999985 8777543 5677777875 35677888887765 98875433221
Q ss_pred CCCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 410 NAENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 410 ~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
..+..++|+++. .+.+++++.++.|++
T Consensus 397 -~~~~~~iRis~~--~~~e~l~~~l~rl~~ 423 (432)
T 3ei9_A 397 -PGGEGFVRVSAF--GHRENILEACRRFKQ 423 (432)
T ss_dssp -GGGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 234578999974 367766655554443
No 159
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.90 E-value=2.1e-21 Score=201.13 Aligned_cols=334 Identities=11% Similarity=0.017 Sum_probs=217.2
Q ss_pred ChHHHHHHHHHHhccCC-CCC------cCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNY-VDM------DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~-~~~------~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~ 140 (498)
.+|.+.+++.+.+...+ ..+ ...+....+++..++++++++|.+. ..+++++|++|+..++.++.++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~------~~v~~~sGs~a~~~a~~~~~~~ 130 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF------ANVQPHSGAQANAAVLHALMSP 130 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc------eEEEeCCHHHHHHHHHHHhcCC
Confidence 47888888887774322 111 1112223444444489999999874 2343778899999888877442
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCchhHH---HHHHHHc--CCeeEEEEecCCccccCHHHHHHHhh-hCCeEEEEeeccCC
Q 010897 141 WQQKRKEQGKPYDKPNIVTGANVQVCW---EKFARYF--EVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTL 214 (498)
Q Consensus 141 ~~~~~~~~g~~~~~~~Iv~s~~~h~~~---~~~~~~~--g~~~~~v~~~~~~~~~d~~~L~~~i~-~~t~~v~~~~~~t~ 214 (498)
+++|++++++|.++ ....... +..+..++++++++.+|+++|++++. .++++|+++.++++
T Consensus 131 -------------Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~ 197 (447)
T 3h7f_A 131 -------------GERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYP 197 (447)
T ss_dssp -------------TCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCC
T ss_pred -------------CCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCC
Confidence 47899999888651 1111222 34555666665558899999999996 47888888888888
Q ss_pred cccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCC
Q 010897 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (498)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~ 294 (498)
++. ++++|.++|+++ |+++|+|++|+.+.. ...... . -.+.+|+++.++||++.+|.| |+++.+. +
T Consensus 198 ~~~--~l~~i~~l~~~~------g~lli~Dea~~~g~~--~~g~~~-~-~~~~~di~~~s~sK~l~G~~g-G~i~~~~-~ 263 (447)
T 3h7f_A 198 RVL--DFAAFRSIADEV------GAKLLVDMAHFAGLV--AAGLHP-S-PVPHADVVSTTVHKTLGGGRS-GLIVGKQ-Q 263 (447)
T ss_dssp SCC--CHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSC-C-STTTCSEEEEESSGGGCCCSC-EEEEECG-G
T ss_pred Ccc--CHHHHHHHHHHc------CCEEEEECCchhhhh--cCCCCC-C-CCCCCcEEEecCCcCCCCCCe-EEEEECH-H
Confidence 776 999999999999 999999999754321 111111 0 124578999999999876655 8887653 2
Q ss_pred CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEeeCC
Q 010897 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GRFEILSKD 370 (498)
Q Consensus 295 ~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~ 370 (498)
.. +.+... .... ..++.....+.++.+++.....+++++..++..++++++.+.|++. ++++++..+
T Consensus 264 ~~-~~l~~~--~~~~------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~ 334 (447)
T 3h7f_A 264 YA-KAINSA--VFPG------QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGG 334 (447)
T ss_dssp GH-HHHHHH--HTTT------TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGS
T ss_pred HH-HHHhhh--cCCc------ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCC
Confidence 21 111100 0000 0123333445666666766655678889999999999999999887 348887643
Q ss_pred CCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCC---CCCCeeEEEEeecCC----CCHHHHHHHHHHHHHHHHH
Q 010897 371 VGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA---NAENVAVLRVVVRED----FSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 371 ~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~---~~~~~~~lRv~v~~~----~t~~~~~~l~~~l~~~l~~ 443 (498)
...+++.+.+.+ .+.+...+.+.|.++|+.+.....|. .......+|++.... +++++++++++.|+++++.
T Consensus 335 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 335 TDVHLVLVDLRD-SPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp CSSSEEEEECTT-SSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEcCC-CCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 356677777743 24567778888888898876222121 012245699986432 5789999999999988865
Q ss_pred H
Q 010897 444 I 444 (498)
Q Consensus 444 l 444 (498)
.
T Consensus 414 ~ 414 (447)
T 3h7f_A 414 G 414 (447)
T ss_dssp G
T ss_pred c
Confidence 3
No 160
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.90 E-value=3.4e-22 Score=203.92 Aligned_cols=286 Identities=16% Similarity=0.103 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH---
Q 010897 95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA--- 171 (498)
Q Consensus 95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~--- 171 (498)
....++++.+++++|.+. .+++++|++|+.+++.++.++ +++|+++.+.|.++...+
T Consensus 65 ~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~~-------------gd~vl~~~~~~~~~~~~~~~~ 124 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGEA-------GLALASGMGAITSTLWTLLRP-------------GDEVLLGNTLYGCTFAFLHHG 124 (398)
T ss_dssp HHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSCCSHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhcC-------------CCEEEEeCCCchhHHHHHHHH
Confidence 344566777999998863 677777799999998887332 468999999999877765
Q ss_pred -HHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccc
Q 010897 172 -RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF 250 (498)
Q Consensus 172 -~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~ 250 (498)
+..|++++.++. .|+++|+++++++|++|+++.++|+||.+.|+++|.++|+++ |+++|+|++|+.+
T Consensus 125 ~~~~g~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~~ 192 (398)
T 1gc0_A 125 IGEFGVKLRHVDM------ADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH------GATVVVDNTYCTP 192 (398)
T ss_dssp GGGGTCEEEEECT------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGG------TCEEEEECTTTHH
T ss_pred HHHcCCEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHc------CCEEEEECCCccc
Confidence 567888888874 379999999999999999999999999999999999999999 9999999999876
Q ss_pred cccccCCCCccccCCCCeeEEEEcCCccCCCCCC--eEEEEEeCCCCCCcccccccCc-cCCCCCCccccCCCchHHHHH
Q 010897 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINY-LGSDQPTFTLNFSKGSSQIIA 327 (498)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g--~g~~~~~~~~~l~~~~~~~~~y-l~~~~~~~~l~~sr~~~~~~a 327 (498)
.. ..+ . . .++|++..+.||++.+|.+ .|+++.+++ .+...+.....+ .+ ++- ..+.
T Consensus 193 ~~--~~~-~--~---~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~---------~~~---~~~~ 251 (398)
T 1gc0_A 193 YL--QRP-L--E---LGADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMTG---------AVL---SPHD 251 (398)
T ss_dssp HH--CCG-G--G---GTCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHTC---------CCC---CHHH
T ss_pred cc--CCc-h--h---hCceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHHhhccCC---------CCC---CHHH
Confidence 52 111 1 1 2479999999999987765 588876542 111111111111 11 112 1233
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--------------EeeC--CCCccEEEEEecCCCCCCHHHH
Q 010897 328 QYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE--------------ILSK--DVGVPLVAFSLKDSSAHTVFEI 391 (498)
Q Consensus 328 ~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~--------------~~~~--~~~~~~v~f~~~~~~~~~~~~l 391 (498)
++++++.+ +.+..++++..++++++.+.|++++.+. +..+ ....++++|.+++ +...+
T Consensus 252 ~~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 325 (398)
T 1gc0_A 252 AALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG----GIGAG 325 (398)
T ss_dssp HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT----HHHHH
T ss_pred HHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC----CHHHH
Confidence 44444433 3346677778888888888888876543 2211 1146899998853 23456
Q ss_pred HHHHHhcCcEeeeecC---------CCC--------------CCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 392 SEGLRKFGWIVPAYTM---------PAN--------------AENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 392 ~~~L~~~G~~v~~~~~---------~~~--------------~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
.+.|.+.|+.++.... |.. .....++|++++...+.++++.|.+.|++
T Consensus 326 ~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 6677777766543110 100 01147899999876666666666655544
No 161
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.90 E-value=2.4e-22 Score=205.03 Aligned_cols=291 Identities=13% Similarity=0.103 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH--
Q 010897 94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA-- 171 (498)
Q Consensus 94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~-- 171 (498)
.....++++++++++|.+. .+++++|++|+.+++.++.++ +++|+++.+.|.++...+
T Consensus 63 ~~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~~-------------gd~vi~~~~~~~~~~~~~~~ 122 (398)
T 2rfv_A 63 NPTTDALEKKLAVLERGEA-------GLATASGISAITTTLLTLCQQ-------------GDHIVSASAIYGCTHAFLSH 122 (398)
T ss_dssp CHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESSSCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCCcccHHHHHHH
Confidence 3455678888999999862 677777889999988887432 468999999999887766
Q ss_pred --HHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCccc
Q 010897 172 --RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (498)
Q Consensus 172 --~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g 249 (498)
+..|++++.++++ |+++|+++++++|++|++++++|+||.+.|+++|.++|+++ |+++|+|++|+.
T Consensus 123 ~~~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~ 190 (398)
T 2rfv_A 123 SMPKFGINVRFVDAA------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ------GALLVVDNTFMS 190 (398)
T ss_dssp HHHHTTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHT------TCEEEEECTTTC
T ss_pred HHHHcCCEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcc
Confidence 7889999888863 79999999998999999999999999999999999999999 999999999987
Q ss_pred ccccccCCCCccccCCCCeeEEEEcCCccCCCCCC--eEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHH
Q 010897 250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA 327 (498)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g--~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a 327 (498)
+..+ .+ ..+ ++|++..+.||++.+|.+ +|+++.+++ .+...+........+ ++- ..+.
T Consensus 191 ~~~~--~~---~~~---~~di~~~s~sK~~~~~g~~~~G~~~~~~~-~~~~~~~~~~~~~~~--------~~~---~~~~ 250 (398)
T 2rfv_A 191 PYCQ--QP---LQL---GADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARFVGLKDITG--------GCM---SPFN 250 (398)
T ss_dssp TTTC--CG---GGG---TCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTHHHHTTC--------CCC---CHHH
T ss_pred cccC--Cc---hhh---CCcEEEEeCcccccCCCCceEEEEEECHH-HHHHHHHHHHHhCCC--------CCC---CHHH
Confidence 6421 11 111 478999999999877665 488886642 211011100000000 111 2233
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--------------EeeC--CCCccEEEEEecCCCCCCHHHH
Q 010897 328 QYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE--------------ILSK--DVGVPLVAFSLKDSSAHTVFEI 391 (498)
Q Consensus 328 ~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~--------------~~~~--~~~~~~v~f~~~~~~~~~~~~l 391 (498)
+++++..+. .+..++++..++++++.+.|++.+.+. +..+ ....++++|.+++. ..+...+
T Consensus 251 ~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~l 327 (398)
T 2rfv_A 251 AWLTLRGVK--TLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG-LEAGRRM 327 (398)
T ss_dssp HHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHH
T ss_pred HHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC-HHHHHHH
Confidence 444444442 234556667778888888887765332 2111 11468899988531 1123344
Q ss_pred HHHHHhcCcEeeeecC------C---C-----------CCCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 392 SEGLRKFGWIVPAYTM------P---A-----------NAENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 392 ~~~L~~~G~~v~~~~~------~---~-----------~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
.+++...|+.+..... + . ......++|++++...+.++++++++.|++
T Consensus 328 ~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 328 INSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 4444444544322100 0 0 011147899999987788887777766654
No 162
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.90 E-value=4.2e-22 Score=204.76 Aligned_cols=344 Identities=14% Similarity=0.059 Sum_probs=214.4
Q ss_pred CcccccccC----CChHHHHHHHHHHh-c-c--CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHH
Q 010897 58 LNLASFVTT----WMEPECDKLVMASI-N-K--NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129 (498)
Q Consensus 58 ~~~~~~~~~----~~~~~~~~~l~~~~-~-~--n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea 129 (498)
++|+...+. ++++.+.+++.+.+ . . ....|....+..++++. ++++++++++ .+++|+|++++
T Consensus 35 i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~----ia~~~~~~~~-----~i~~t~G~~~a 105 (422)
T 3d6k_A 35 LDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIREL----WAEALGLPAD-----LVVAQDGSSLN 105 (422)
T ss_dssp EECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHH----HHHHHTCCGG-----GEEECSSCHHH
T ss_pred EeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHH----HHHHhCCChh-----HEEEecchHHH
Confidence 455555553 23334555554432 1 1 12234443445555555 6666677642 48999999999
Q ss_pred HH--HHHHHHHHHHHHHHHhcCCCC----CCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhh-C
Q 010897 130 IM--LAGLAFKRKWQQKRKEQGKPY----DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-N 202 (498)
Q Consensus 130 ~~--la~~a~~~~~~~~~~~~g~~~----~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~-~ 202 (498)
++ +++.++...+ ..|... ++++|+++.++|..+...++..|++++.+|++++ + +|+++|++++++ +
T Consensus 106 l~l~~~~~~l~~~~-----~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~~~~ 178 (422)
T 3d6k_A 106 IMFDLISWSYTWGN-----NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE-G-PDMGVVRELVKDPQ 178 (422)
T ss_dssp HHHHHHHHHHHHCC-----TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-E-ECHHHHHHHHTSTT
T ss_pred HHHHHHHHHhcCcc-----cccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC-C-CCHHHHHHHHhcCC
Confidence 73 4444442210 001000 1247999999999999999999999999999875 3 999999999985 6
Q ss_pred CeEEE-EeeccCCcccccCHH---HHHHHHH-HhhcccCCCceEEEecCccc--ccccccCCCC-cc-c----cCCCCee
Q 010897 203 TICVA-AILGSTLTGEFEDVK---LLHDLLT-KKNEETGWDTPIHVDAASGG--FIAPFLYPDL-EW-D----FRLPLVK 269 (498)
Q Consensus 203 t~~v~-~~~~~t~tG~~~~l~---~I~~la~-~~~~~~~~~~~l~vD~A~~g--~~~~~~~~~~-~~-~----~~~~~~d 269 (498)
+++|+ +++++||||.+.+.+ +|.++|+ ++ |++|++|++|+. +.. ..+.. .. . ......+
T Consensus 179 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~------~~~li~De~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 250 (422)
T 3d6k_A 179 VKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAP------DFRIVWDNAYALHTLSD--EFPIVHNVIEFAQAAGNPNRF 250 (422)
T ss_dssp EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST------TCEEEEECTTTTCBSSS--CCCCCCCHHHHHHHTTCTTCE
T ss_pred CeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhcc------CCEEEEECCccccccCC--CCCCCcChhhHhhccCCCCcE
Confidence 78877 678999999998877 6777777 88 999999999974 321 11011 10 1 1223456
Q ss_pred EEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcH-H----HHHHHH
Q 010897 270 SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-E----GYKNIM 344 (498)
Q Consensus 270 si~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~-~----g~~~~~ 344 (498)
.+..+.+|+++++.++||++.+. +.+ +.+....... + ++ ...++|.++...+.. . .+++..
T Consensus 251 i~~~S~SK~~~~GlriG~~~~~~-~l~-~~l~~~~~~~-------~--~~---~~~~~q~a~~~~l~~~~~~~~~~~~~~ 316 (422)
T 3d6k_A 251 WFMSSTSKITHAGSGVSFFASSK-ENI-EWYASHANVR-------G--IG---PNKLNQLAHAQFFGDVAGLKAHMLKHA 316 (422)
T ss_dssp EEEEESTTTSCTTSSCEEEECCH-HHH-HHHHHHHHHH-------C--SC---CCHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred EEEcChhhhcCcccceEEEEeCH-HHH-HHHHHHHHhh-------c--CC---CCHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 77788899977777899998542 211 1111000000 0 11 123445555555543 2 233344
Q ss_pred HHHHHHHHHHHHHHhc----CCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeee-ec-CCCCC-CCeeEE
Q 010897 345 ENCMGNARALREGLEK----TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPA-YT-MPANA-ENVAVL 417 (498)
Q Consensus 345 ~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~-~~-~~~~~-~~~~~l 417 (498)
+...++++++.+.|.+ .+++.+..+. ...++.++++.. +...+.+.|.++|+.+.. .. ++... ....++
T Consensus 317 ~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-~g~~~~~~~~~~---~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~i 392 (422)
T 3d6k_A 317 ASLAPKFERVLEILDSRLSEYGVAKWTSPT-GGYFISVDVVPG---TASRVVELAKEAGIALTGAGSSFPLHNDPNNENI 392 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCEEECCCS-BSSCEEEEESTT---CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhcCcCCceEEeCCC-cceEEEEECCCC---CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeE
Confidence 4444566666666653 4546655443 566777888532 567888999999998754 21 21011 134689
Q ss_pred EEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 418 RVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 418 Rv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
|+++.. .+.++++++++.|+++++++
T Consensus 393 Ris~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 393 RLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp EECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 999976 78999999999999988765
No 163
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.89 E-value=1.8e-22 Score=206.60 Aligned_cols=347 Identities=11% Similarity=0.048 Sum_probs=217.0
Q ss_pred CCCCCccccccc------CCChHHHHHHHHHHhcc--CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceee--e
Q 010897 54 GNPRLNLASFVT------TWMEPECDKLVMASINK--NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--T 123 (498)
Q Consensus 54 ~~p~~~~~~~~~------~~~~~~~~~~l~~~~~~--n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t 123 (498)
+...++++...+ .++++.+.+++.+.+.. ....|....+..++++.+.+++....|.+.+. ..+++ |
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~---~~v~~~~t 105 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQE---KRVGGVQS 105 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEE
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCC---CcEEEEEC
Confidence 334445555543 23557888888887722 22334444566777777666654433321111 12888 9
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCe-eEEEEec-CCccccCHHHHHHHhhh
Q 010897 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLE-EGYYVMNPVKAVELVDE 201 (498)
Q Consensus 124 ~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~-~~~v~~~-~~~~~~d~~~L~~~i~~ 201 (498)
+|+++|+.+++..+..- . .|.+...++|+++.++|..+...++..|++ ++.++++ ++++.+|+++|++++++
T Consensus 106 ~gg~~a~~~~~~~~~~~-~-----~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 179 (412)
T 1ajs_A 106 LGGTGALRIGAEFLARW-Y-----NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 179 (412)
T ss_dssp EHHHHHHHHHHHHHHHH-S-----SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh-C-----cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHh
Confidence 99999999886543221 0 110000168999999999999999999999 9999985 24578999999999976
Q ss_pred ---CCeEEEEeeccCCccccc---CHHHHHHHHHHhhcccCCCceEEEecCcccccccccC---CCCccc-c-CCCCeeE
Q 010897 202 ---NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY---PDLEWD-F-RLPLVKS 270 (498)
Q Consensus 202 ---~t~~v~~~~~~t~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~---~~~~~~-~-~~~~~ds 270 (498)
++++|++++++||||.+. ++++|.++|+++ |+++++|++|.++.. .. +..... + ....-++
T Consensus 180 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~i 251 (412)
T 1ajs_A 180 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR------FLFPFFDSAYQGFAS--GNLEKDAWAIRYFVSEGFELF 251 (412)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcccccccC--CcccccchHHHHHhccCCcEE
Confidence 677888899999999984 466899999999 999999999987642 10 000001 1 1122346
Q ss_pred EEEcCCccCCC-CCCeEEEEEe--CCCCCCccccccc-CccCCCCCCccccCCCchHHHHHHHHHHHHhc-----HHHHH
Q 010897 271 INVSGHKYGLV-YAGVGWVVWR--TKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-----FEGYK 341 (498)
Q Consensus 271 i~~s~hK~l~~-p~g~g~~~~~--~~~~l~~~~~~~~-~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-----~~g~~ 341 (498)
+..+.+|.++. +.++|+++.. +++.+ +.+.... .+... . . ...+.....+...+|.... .+.++
T Consensus 252 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~-~~~~~~~~~~~~~---~--~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 324 (412)
T 1ajs_A 252 CAQSFSKNFGLYNERVGNLTVVAKEPDSI-LRVLSQMQKIVRV---T--W-SNPPAQGARIVARTLSDPELFHEWTGNVK 324 (412)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECSSHHHH-HHHHHHHHHHHHT---T--T-SSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEecccccCCCCcceEEEEEecCCHHHH-HHHHHHHHHHHhc---c--c-CCCChHHHHHHHHHHcCcchhHHHHHHHH
Confidence 77899997754 5568999973 33211 0000000 00000 0 0 1111122223333333221 23567
Q ss_pred HHHHHHHHHHHHHHHHHhcCC---CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEE
Q 010897 342 NIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLR 418 (498)
Q Consensus 342 ~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lR 418 (498)
+..++..++++++.+.|++++ ++++..+ ..+++.|. + .+...+...|.++|+.+.. .+|
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~--~---~~~~~~~~~l~~~gv~v~~-----------~~R 386 (412)
T 1ajs_A 325 TMADRILSMRSELRARLEALKTPGTWNHITD--QIGMFSFT--G---LNPKQVEYLINQKHIYLLP-----------SGR 386 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH--CCSSEEEC--C---CCHHHHHHHHHTTCEECCT-----------TSE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC--CCceEEEe--C---CCHHHHHHHHHhCCEEecC-----------CcE
Confidence 788888889999999999876 4665443 23444441 1 2344555667788987642 169
Q ss_pred EeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 419 VVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 419 v~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
++++. .+.++++++++.|++++++
T Consensus 387 is~~~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 387 INMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp EEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred EEeee-CCHHHHHHHHHHHHHHHHh
Confidence 99873 4889999999999988764
No 164
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.89 E-value=5.9e-22 Score=200.00 Aligned_cols=317 Identities=15% Similarity=0.085 Sum_probs=200.8
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
+++.+.+++.+.+.........|+. ....++++++++++|++ + .+++|+|+++|+.+++.+++. +.. .
T Consensus 45 ~~~~v~~a~~~~~~~~~~~~~~y~~--~~~~~l~~~la~~~g~~-~-----~v~~~~g~t~a~~~~~~~~~~-~~~-~-- 112 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKLLHVSNLYEN--PWQEELAHKLVKHFWTE-G-----KVFFANSGTESVEAAIKLARK-YWR-D-- 112 (375)
T ss_dssp SCHHHHHHHHHHHHHCSCCCTTBCC--HHHHHHHHHHHHTSSSC-E-----EEEEESSHHHHHHHHHHHHHH-HHH-H--
T ss_pred CCHHHHHHHHHHHHhccccCcccCC--HHHHHHHHHHHhhcCCC-C-----eEEEeCchHHHHHHHHHHHHH-Hhc-c--
Confidence 5678888888877543211112322 22346677899999983 1 289999999999998876422 110 0
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCCeeE----EEEecCCccc----cCHHHHHHHhhhCCeEEEEeeccCCccccc
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELK----EVKLEEGYYV----MNPVKAVELVDENTICVAAILGSTLTGEFE 219 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~----~v~~~~~~~~----~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~ 219 (498)
+.+ ++++|++++++|..+...+..++.... ..|+.++ .. +|+++|++++++++++|+++.++|+||.+.
T Consensus 113 -~~~-g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~ 189 (375)
T 2eh6_A 113 -KGK-NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPG-FSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNE 189 (375)
T ss_dssp -TTC-CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSS-EEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEE
T ss_pred -CCC-CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCC-ceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcC
Confidence 111 126888888875544433333322110 0111111 11 589999999998899999999999999998
Q ss_pred C----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcc-ccCCCCeeEEEEcCCccCCCCCCeEEEEEeCCC
Q 010897 220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (498)
Q Consensus 220 ~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~-~~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~ 294 (498)
| +++|.++|+++ |+++|+|++|+++.. ....... .++. ..|++++| |+++++.++|+++++++
T Consensus 190 ~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~-~~d~~s~S--K~~~~g~~~G~~~~~~~- 257 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEK------DVLLIIDEVQTGIGR--TGEFYAYQHFNL-KPDVIALA--KGLGGGVPIGAILAREE- 257 (375)
T ss_dssp CCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEEEEC--GGGGTTSCCEEEEEEHH-
T ss_pred CCHHHHHHHHHHHHHh------CCEEEEeccccCCCC--CCcchhhhhcCC-CCCEEEEc--ccccCCCCeEEEEEcHH-
Confidence 8 99999999999 999999999997531 1111111 1111 26777666 77778899999998752
Q ss_pred CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCcc
Q 010897 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (498)
Q Consensus 295 ~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 374 (498)
.. +.+.. ...+ .. .+-+.....+..++++.+. +..++..++++++.+.|++++. ..... ..+
T Consensus 258 ~~-~~~~~--~~~~---~~----~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~-~~~~~--~g~ 319 (375)
T 2eh6_A 258 VA-QSFTP--GSHG---ST----FGGNPLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGK-GKVKG--RGL 319 (375)
T ss_dssp HH-TTCCT--TSCC---CS----STTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTS-SEEEE--ETT
T ss_pred HH-hhhcC--CCCC---CC----CCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhc-CCceE--EEE
Confidence 21 11110 0000 01 1111222222233333321 6677888899999999998874 22222 457
Q ss_pred EEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 375 LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
++.+.++. +..++++.|.++|+.+... +..++|+++....+.++++++++.|+++
T Consensus 320 ~~~~~~~~----~~~~~~~~l~~~gi~~~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 320 MLGLELER----ECKDYVLKALEKGLLINCT-------AGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp EEEEECSS----CCHHHHHHHHHTTEECEEE-------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEcC----cHHHHHHHHHHCCCEEecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 78887743 3468999999999876532 2356999987778999999998888765
No 165
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.89 E-value=1.9e-21 Score=198.41 Aligned_cols=326 Identities=13% Similarity=0.030 Sum_probs=208.9
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+.........++ .....++++++++++|.+. +++|+||++|+.+++.+++..+...
T Consensus 56 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~-------v~~~~gg~~a~~~al~~~~~~~~~~--- 123 (406)
T 4adb_A 56 AHPELREALNEQASKFWHTGNGYT--NEPVLRLAKKLIDATFADR-------VFFCNSGAEANEAALKLARKFAHDR--- 123 (406)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSC--CHHHHHHHHHHHHHSSCSE-------EEEESSHHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHhcccccCCcC--CHHHHHHHHHHHhhCCCCe-------EEEeCcHHHHHHHHHHHHHHHHHhc---
Confidence 368888989888876433222222 2345678888999998653 9999999999999998876532211
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCC-------------eeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~-------------~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
|.+ +++.|++.++.|..+...+...+. ++..+|. .|+++|++++++++++|+++ |+|+
T Consensus 124 -~~~-g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~-p~np 194 (406)
T 4adb_A 124 -YGS-HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY------NDINSASALIDDSTCAVIVE-PIQG 194 (406)
T ss_dssp -TCT-TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT------TCHHHHHTTCSTTEEEEEEC-SEET
T ss_pred -CCC-CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC------CcHHHHHHHhcCCeEEEEEe-CCcC
Confidence 111 235677766666544333333332 2333321 48999999999889988888 9999
Q ss_pred cccc-----cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCccCCCCCCeEEE
Q 010897 215 TGEF-----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVYAGVGWV 288 (498)
Q Consensus 215 tG~~-----~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~l~~p~g~g~~ 288 (498)
+|.+ +++++|.++|+++ |+++|+|++|+++.. .......+ ++. ..|.+++ +|.+.++.++|++
T Consensus 195 ~g~~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~-~~d~~t~--sK~~~~G~r~G~~ 263 (406)
T 4adb_A 195 EGGVVPASNAFLQGLRELCNRH------NALLIFDEVQTGVGR--TGELYAYMHYGV-TPDLLTT--AKALGGGFPVGAL 263 (406)
T ss_dssp TTTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEE
T ss_pred CCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--cchhHHHHhcCC-CCCEEEe--chhhcCCCCeEEE
Confidence 9854 5799999999999 999999999987531 11111111 121 2466654 8988777779998
Q ss_pred EEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEe
Q 010897 289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR-FEIL 367 (498)
Q Consensus 289 ~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~~~ 367 (498)
+.++. .. +.+ .......+ ++.+.....+..++++.+.. .+..++..++++++.+.|++++. +.+.
T Consensus 264 ~~~~~-~~-~~~-------~~~~~~~~--~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 329 (406)
T 4adb_A 264 LATEE-CA-RVM-------TVGTHGTT--YGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLF 329 (406)
T ss_dssp EECHH-HH-HTC-------CTTSSCCS--STTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEcHH-HH-hhh-------ccCCcCCC--CCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 76532 11 111 00000111 22222344444445544433 46677777888888888876531 1111
Q ss_pred eC-CCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 368 SK-DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 368 ~~-~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
.. .....++.|.++.....+..++.+.|.++|+.+... +..++|+++....+.++++++++.|+++++++.+
T Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~-------~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 330 SEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIA-------GGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp EEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEES-------STTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeec-------CCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 113567788885432236789999999999876531 2467999888888999999999999999987654
No 166
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.82 E-value=3.9e-25 Score=225.12 Aligned_cols=331 Identities=12% Similarity=0.007 Sum_probs=224.0
Q ss_pred CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
+++|.+.+++.+.+......|... ..++++++.+++++.+|.+.+. ..+++|+|+++|+.+++.++.++
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~v~~~~g~~~a~~~~~~~~~~~------ 112 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDK---EDIVFVEGVVPAISIAIQAFTKE------ 112 (392)
Confidence 345778888888776543333322 6678888888888888854322 23899999999999988887543
Q ss_pred hcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec-CC-ccccCHHHHHHHhh-hCCeEEEEeeccCCcccccC---
Q 010897 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EG-YYVMNPVKAVELVD-ENTICVAAILGSTLTGEFED--- 220 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~-~~-~~~~d~~~L~~~i~-~~t~~v~~~~~~t~tG~~~~--- 220 (498)
+++|+++.++|..+...++..|++++.++++ ++ +|.+|+++|+++++ .++++|++++++||||.+.+
T Consensus 113 -------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 185 (392)
T 3b1d_A 113 -------GEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREV 185 (392)
Confidence 3589999999999999999999999999985 22 36799999999997 67888889999999999865
Q ss_pred HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCC----CCeeEEEEcCCccCC-CCCCeEEEEEeCCCC
Q 010897 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL----PLVKSINVSGHKYGL-VYAGVGWVVWRTKDD 295 (498)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~----~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~ 295 (498)
+++|.++|+++ |+++++|++|+++... .......+.+ ...+.+..+.+|++. ++.++|+++.++++.
T Consensus 186 l~~l~~~~~~~------~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 257 (392)
T 3b1d_A 186 LEQIGHLCQKH------HVILVSDEIHQDLTLF--GHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTL 257 (392)
Confidence 89999999999 9999999999987521 1100000111 234566778999885 777899998765433
Q ss_pred CCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeeCCCC
Q 010897 296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEGYKNIMENCMGNARALREGLEK-TGRFEILSKDVG 372 (498)
Q Consensus 296 l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~ 372 (498)
. ..+ ......+++ ++ ...+++.+++..+ +.+.+++..++..++++++.+.|++ ++++++..+ .
T Consensus 258 ~-~~~-------~~~~~~~~~-~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~ 323 (392)
T 3b1d_A 258 C-AQF-------KHQQLVNNH-HE---VSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP--Q 323 (392)
Confidence 2 111 111111110 01 1223344333333 2344667777788899999999988 777776644 3
Q ss_pred ccEEE-EEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 373 VPLVA-FSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 373 ~~~v~-f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
.+++. ++++.. +.+..++.++|. ++|+.+....... ..+..++|+++.. +.++++++++.|++++
T Consensus 324 ~~~~~~i~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~~--~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 324 GTYLIWLDFSDY-GLTDDALFTLLHDQAKVILNRGSDYG-SEGELHARLNIAA--PKSLVEEICKRIVCCL 390 (392)
Confidence 45554 566421 245668999996 7898875432211 1245679999864 4667776666666554
No 167
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.89 E-value=9.2e-22 Score=200.72 Aligned_cols=355 Identities=12% Similarity=0.018 Sum_probs=214.0
Q ss_pred HHHHHHHHHHhhhcc-CCCCCcccccccC-CChHHHHHHHHHHhccC-----CCCCcCCcchHHHHHHHHHHHHHH--cC
Q 010897 39 KEAAYQVINDELMLD-GNPRLNLASFVTT-WMEPECDKLVMASINKN-----YVDMDEYPVTTELQNRCVNMIAHL--FN 109 (498)
Q Consensus 39 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~n-----~~~~~~~~~~~~le~~~~~~la~l--~g 109 (498)
.+++.+........+ ++..+++....+. +++|.+.+++.+++... ...|...++..++++. ++++ .|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~----la~~l~~g 91 (400)
T 3asa_A 16 FADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQK----LSEDFYRG 91 (400)
T ss_dssp HHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHH----HHHTTSTT
T ss_pred HHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH----HHHHHHcC
Confidence 445544444432222 3334455554443 45677888887776531 1223333345555555 6666 46
Q ss_pred -CCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCe-eEEEEecCC-
Q 010897 110 -TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLEEG- 186 (498)
Q Consensus 110 -~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~-~~~v~~~~~- 186 (498)
.+. ..+++|+|+++++.+++..+ . .+++|+++.++|..+...++..|++ ++.+|++++
T Consensus 92 ~~~~-----~~v~~~~G~~~al~~~~~~~-~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 152 (400)
T 3asa_A 92 FVDA-----KEIFISDGAKVDLFRLLSFF-G-------------PNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQEN 152 (400)
T ss_dssp SSCG-----GGEEEESCHHHHHHHHHHHH-C-------------SSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGG
T ss_pred CCCH-----HHEEEccChHHHHHHHHHHc-C-------------CCCEEEECCCCcHHHHHHHHHcCCcceEecccchhc
Confidence 332 24899999999997644322 1 1468999999999999999999999 999998642
Q ss_pred ccccCHHHHHHHhhhCCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc
Q 010897 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF 263 (498)
Q Consensus 187 ~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~ 263 (498)
.+..|+++ + +++++|++++++||||.+.| +++|.++|+++ |+++++|++|+++.. .+.....+
T Consensus 153 ~~~~~l~~----~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~~~~~~~~ 218 (400)
T 3asa_A 153 AFFPEFPE----D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH------EILILFDAAYSTFIS---DPSLPKSI 218 (400)
T ss_dssp TTCCCCCT----T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGCC---CTTSCSSG
T ss_pred CcccChhh----c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhc---CCCCCCch
Confidence 24444322 1 56889999999999999977 56788899999 999999999997642 11111111
Q ss_pred -CCC---CeeEEEEcCCccCC-CCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHH
Q 010897 264 -RLP---LVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338 (498)
Q Consensus 264 -~~~---~~dsi~~s~hK~l~-~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~ 338 (498)
.++ ..+.+..+.+|+++ ++.++||++.++. .. .........+.......+. ++. ..+++.++...+...
T Consensus 219 ~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~a~~~~l~~~ 292 (400)
T 3asa_A 219 FEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQE-LT-YADGHFVIQDWERFLSTTF-NGA---SIPAQEAGVAGLSIL 292 (400)
T ss_dssp GGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTT-CB-CTTSCBHHHHHHHHHHHHC-CCC---CHHHHHHHHHHHHHT
T ss_pred hhCCCCCCceEEEecchhhcCCcchheeEEeeChh-hc-cchhhhHHHHHHHHhccCc-cCC---ChHHHHHHHHHhCcH
Confidence 222 24577889999875 6677899986543 21 0000000000000000000 112 222333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEE-ecCCCCCCHHHHHHHHHh-cCcEeeeecCCCCCCCeeE
Q 010897 339 GYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFS-LKDSSAHTVFEISEGLRK-FGWIVPAYTMPANAENVAV 416 (498)
Q Consensus 339 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~-~~~~~~~~~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~ 416 (498)
.+++..++..++++++.+.|++.+ +++..+. ..+++.++ ++. +.+..++.++|.+ +|+.+....... ..+..+
T Consensus 293 ~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~l~~~~gv~v~~g~~f~-~~~~~~ 367 (400)
T 3asa_A 293 PQLEAIHYYRENSDLLRKALLATG-FEVFGGE-HAPYLWVKPTQA--NISDRDLFDFFLREYHIAITPGIGFG-RSGSGF 367 (400)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTT-CEEEECS-SSSEEEEECCCT--TCCTTTHHHHHHHHHSEECEEGGGGC-GGGTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCC-CceEEEEeccCC--CCCHHHHHHHHHHhCCEEEeChhHhC-CCCCCE
Confidence 456777888889999999999884 8877543 46777778 642 3455578888865 598875432111 123457
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 417 LRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 417 lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
+|+++ ..+.++++++++.|+++++.
T Consensus 368 iRis~--~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 368 VRFSS--LGKREDILAACERLQMAPAL 392 (400)
T ss_dssp EEEEC--CSCHHHHHHHHHHHHC----
T ss_pred EEEEe--eCCHHHHHHHHHHHHHHHHh
Confidence 99994 34788888877777766643
No 168
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.89 E-value=1.3e-21 Score=201.64 Aligned_cols=288 Identities=12% Similarity=-0.026 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHH----
Q 010897 95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF---- 170 (498)
Q Consensus 95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~---- 170 (498)
....++++++++++|.+. .+++++|++|+.+++.++.++ +++||++.+.|.++...
T Consensus 114 ~~~~~l~~~lA~l~g~~~-------~v~~~sG~~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~ 173 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAES-------TLLMASGMCASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETI 173 (445)
T ss_dssp HHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHSCS-------------SCEEEEETTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHHHHHHH
Confidence 344567777999999852 556666669999888876432 46899999999876654
Q ss_pred HHHcCCeeEEEEecCCccccCHHHHHHHhhhCC-eEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCccc
Q 010897 171 ARYFEVELKEVKLEEGYYVMNPVKAVELVDENT-ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (498)
Q Consensus 171 ~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t-~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g 249 (498)
++.+|++++.++.+ |+++|+++|+++| ++|++++++||+|.+.|+++|.++|+++ |+++|+|++|+.
T Consensus 174 ~~~~G~~v~~v~~~------d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~------g~~livD~a~~~ 241 (445)
T 1qgn_A 174 LPKMGITATVIDPA------DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEK------GALVCIDGTFAT 241 (445)
T ss_dssp GGGGTCEEEEECSS------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTC
T ss_pred HHHcCCEEEEeCCC------CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcc
Confidence 45679999888753 7999999999999 9999999999999999999999999999 999999999986
Q ss_pred ccccccCCCCccccCCCCeeEEEEcCCccCCCCC--CeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHH
Q 010897 250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA 327 (498)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~--g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a 327 (498)
+.. ..+ +. .++|+++.|+||+++++. .+|+++.++ +.+ ..+.......+ ++.+ .+.
T Consensus 242 ~~~--~~~-----~~-~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~-~~l~~~~~~~g---------~~~~---~~~ 299 (445)
T 1qgn_A 242 PLN--QKA-----LA-LGADLVLHSATKFLGGHNDVLAGCISGPL-KLV-SEIRNLHHILG---------GALN---PNA 299 (445)
T ss_dssp TTT--CCT-----TT-TTCSEEEECTTTTTTCSSSCCCEEEEECH-HHH-HHHHHHHHHHC---------CCCC---HHH
T ss_pred ccc--CCc-----cc-cCCEEEEECCcccccccccceEEEEEECH-HHH-HHHHHHHHHhC---------CCCC---HHH
Confidence 532 111 11 258999999999986543 288888654 221 11110001111 1111 122
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCe-EEeeCC---------------CCccEEEEEecCCCCCCHHHH
Q 010897 328 QYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRF-EILSKD---------------VGVPLVAFSLKDSSAHTVFEI 391 (498)
Q Consensus 328 ~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~-~~~~~~---------------~~~~~v~f~~~~~~~~~~~~l 391 (498)
.|.+++.+ +.+..++++..++++++.+.|++.|++ .+..+. ...++++|.+++. ..+...+
T Consensus 300 a~~~~~~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-~~~~~~~ 376 (445)
T 1qgn_A 300 AYLIIRGM--KTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-LLTTAKF 376 (445)
T ss_dssp HHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHH
T ss_pred HHHHHHhH--HHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-HHHHHHH
Confidence 33333332 445667788888899999999999877 454331 1467999999641 1124566
Q ss_pred HHHHHhcCcEeeeecC---------------CC-----CCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 392 SEGLRKFGWIVPAYTM---------------PA-----NAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 392 ~~~L~~~G~~v~~~~~---------------~~-----~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
.+.|...++.++.... +. .....+.+|+|++ .|+++.++++|+++++.
T Consensus 377 l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 377 VDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp HHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred HHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 6666533433221100 00 0122468999997 47899999999998864
No 169
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.89 E-value=8.7e-22 Score=204.95 Aligned_cols=340 Identities=10% Similarity=0.055 Sum_probs=209.4
Q ss_pred HHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcC
Q 010897 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG 149 (498)
Q Consensus 70 ~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g 149 (498)
+.+.+++.+.+......|...+...+ +++++++++|.+. +++|+||++|+.+++.++...+. ..
T Consensus 55 ~~v~~a~~~~~~~~~~~y~~~~~~~~----l~~~la~~~~~~~-------v~~t~ggt~A~~~al~~~~~~~~----~~- 118 (467)
T 1ax4_A 55 NAMSDHQWAAMITGDEAYAGSRNYYD----LKDKAKELFNYDY-------IIPAHQGRGAENILFPVLLKYKQ----KE- 118 (467)
T ss_dssp CCEEHHHHHHHHTCCCCSSSCHHHHH----HHHHHHHHHCCCE-------EEEESSHHHHHHHHHHHHHHHHH----HT-
T ss_pred HHHHHHHHHHHhhcccccccCccHHH----HHHHHHHHcCCCc-------EEEcCCcHHHHHHHHHHHHHhhc----cC-
Confidence 44555555555433223333344444 4556888888743 99999999999999998865211 01
Q ss_pred CCCCCcE---EEEcCCchhHHHHHHHHcCCeeEEEEecC---------CccccCHHHHHHHhhh----CCeEEEEeeccC
Q 010897 150 KPYDKPN---IVTGANVQVCWEKFARYFEVELKEVKLEE---------GYYVMNPVKAVELVDE----NTICVAAILGST 213 (498)
Q Consensus 150 ~~~~~~~---Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~---------~~~~~d~~~L~~~i~~----~t~~v~~~~~~t 213 (498)
+++ |+++.+.|..+..++...|.+++.++... .++.+|+++|++++++ +|++|+++.++|
T Consensus 119 ----Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~n 194 (467)
T 1ax4_A 119 ----GKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCN 194 (467)
T ss_dssp ----TCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBT
T ss_pred ----CCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEecccc
Confidence 244 77774444676778888899888776531 1357999999999984 689999999999
Q ss_pred Cc-ccc---cCHHHHHHHHHHhhcccCCCceEEEecCccc-ccc-------cccCCCCccccC---CCCeeEEEEcCCcc
Q 010897 214 LT-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG-FIA-------PFLYPDLEWDFR---LPLVKSINVSGHKY 278 (498)
Q Consensus 214 ~t-G~~---~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g-~~~-------~~~~~~~~~~~~---~~~~dsi~~s~hK~ 278 (498)
++ |.+ +++++|.++|++| |++||+|++++. +.. .+..... .++. ...+|+++++.||+
T Consensus 195 p~gG~~~~~~~l~~i~~la~~~------gi~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~sK~ 267 (467)
T 1ax4_A 195 SAGGQPVSMSNLKEVYEIAKQH------GIFVVMDSARFCENAYFIKARDPKYKNATI-KEVIFDMYKYADALTMSAKKD 267 (467)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHHHHHCGGGTTCCH-HHHHHHHGGGCSEEEEETTST
T ss_pred CCCccCCChhHHHHHHHHHHHc------CCEEEEEchhhhhcchhccccccccCCCch-hhhhhhhccccceEEEecccc
Confidence 99 775 5678999999999 999999998654 110 1111000 0110 02467888999999
Q ss_pred CCCCCCeEEEEEeCC-CCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010897 279 GLVYAGVGWVVWRTK-DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREG 357 (498)
Q Consensus 279 l~~p~g~g~~~~~~~-~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~ 357 (498)
++.|.| |+++.+++ +.+.........+ ++. .++ +..+...+.++..++..... .+.+++..++++++.+.
T Consensus 268 ~g~~~G-g~~~~~d~~~l~~~~~~~~~~~-~~~-~~~---~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~ 338 (467)
T 1ax4_A 268 PLLNIG-GLVAIRDNEEIFTLARQRCVPM-EGF-VTY---GGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDR 338 (467)
T ss_dssp TCCSSC-EEEEESSCHHHHHHHHHHHHHH-TCS-TTT---TTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCcc-eEEEeCCHHHHHHHHHhhcccc-ccc-ccc---CCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Confidence 876645 66655534 3321111111111 111 111 22222223333334433222 12344455778888999
Q ss_pred HhcCCCeEEeeCCCCccEEEEE-------ecCCCCCCHHHHHHHH-HhcCcEeee-ecC-----CCC----CCCeeEEEE
Q 010897 358 LEKTGRFEILSKDVGVPLVAFS-------LKDSSAHTVFEISEGL-RKFGWIVPA-YTM-----PAN----AENVAVLRV 419 (498)
Q Consensus 358 L~~~~~~~~~~~~~~~~~v~f~-------~~~~~~~~~~~l~~~L-~~~G~~v~~-~~~-----~~~----~~~~~~lRv 419 (498)
|++. ++++..+. +..++.+. ++ ..+.+..+++++| .++|+.+.. ... +.. .....++|+
T Consensus 339 L~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRl 415 (467)
T 1ax4_A 339 LREA-GIPIQYPT-GGHAVFVDCKKLVPQIP-GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL 415 (467)
T ss_dssp HHHT-TCCBCSSC-CSSEEEEESTTTCTTSC-GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred HHhC-CCCcccCC-CceEEEEehhhhccccc-cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEE
Confidence 9874 57765433 55666667 31 1134567899999 899988754 211 100 012368999
Q ss_pred eecC-CCCHHHHHHHHHHHHHHHHHHHcCc
Q 010897 420 VVRE-DFSRSLVERLISHIEEVLKEIESLP 448 (498)
Q Consensus 420 ~v~~-~~t~~~~~~l~~~l~~~l~~l~~~~ 448 (498)
++.. .+|.++++++++.|+++++.+++.+
T Consensus 416 s~~~~~~t~e~i~~~~~~l~~~~~~~~~~~ 445 (467)
T 1ax4_A 416 TIARRVYTNDHMDYIADALIGLKEKFATLK 445 (467)
T ss_dssp ECCTTSSCHHHHHHHHHHHHTTHHHHTTCC
T ss_pred ecccccCCHHHHHHHHHHHHHHHHhhhcCC
Confidence 9874 3789999999999999988765543
No 170
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.89 E-value=4.1e-21 Score=199.34 Aligned_cols=345 Identities=13% Similarity=0.079 Sum_probs=210.4
Q ss_pred CCCCCcccccc-cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHH
Q 010897 54 GNPRLNLASFV-TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (498)
Q Consensus 54 ~~p~~~~~~~~-~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~l 132 (498)
+.+.+++.+.. +.+..+.+.+++. .....|...+...+++ +.+++++|.+. +++|+||++|+.+
T Consensus 41 ~~~ylD~~~~~~~~~~~~~~~~a~~----~~~~~y~~~~~~~~l~----~~la~~~~~~~-------~~~~~~gt~a~~~ 105 (456)
T 2ez2_A 41 KDIYIDLLTDSGTNAMSDKQWAGMM----MGDEAYAGSENFYHLE----RTVQELFGFKH-------IVPTHQGRGAENL 105 (456)
T ss_dssp GGCSEECSCSSSCCCCCHHHHHHHT----TCCCCSSSCHHHHHHH----HHHHHHHCCSE-------EEEESSHHHHHHH
T ss_pred ccceeeeccccCCccCCHHHHHHhh----cchhhcccChhHHHHH----HHHHHHhCCCc-------EEEeCCcHHHHHH
Confidence 44544333322 2234455555554 2212233344444554 45788888753 8999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCch-hHHHHHHHHcCCeeEEEEecCC---------ccccCHHHHHHHhhhC
Q 010897 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ-VCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDEN 202 (498)
Q Consensus 133 a~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h-~~~~~~~~~~g~~~~~v~~~~~---------~~~~d~~~L~~~i~~~ 202 (498)
++.++.++ ++ +++.++| .++..+++..|++++.++++++ ++.+|+++|+++++++
T Consensus 106 al~~l~~~-------------gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 170 (456)
T 2ez2_A 106 LSQLAIKP-------------GQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEK 170 (456)
T ss_dssp HHHHHCCT-------------TC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHH
T ss_pred HHHHhCCC-------------CC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhc
Confidence 98877321 24 6777788 8888999999999999998732 2689999999999877
Q ss_pred C----eEEEEeeccC-CcccccC---HHHHHHHHHHhhcccCCCceEEEecCccccc--------ccccCCCCc-c--cc
Q 010897 203 T----ICVAAILGST-LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFI--------APFLYPDLE-W--DF 263 (498)
Q Consensus 203 t----~~v~~~~~~t-~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~--------~~~~~~~~~-~--~~ 263 (498)
+ ++|+++.++| +||.+.| +++|.++|+++ |+++|+|++|+.+. ..+...... . .+
T Consensus 171 t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~------~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 244 (456)
T 2ez2_A 171 GAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH------GIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEM 244 (456)
T ss_dssp CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHT------TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHH
T ss_pred cccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHc------CCeEEEEccccccccccccccccccCCcchhhhhhhh
Confidence 6 7888898998 9999876 99999999999 99999999997631 111111000 0 01
Q ss_pred CCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHH-HH
Q 010897 264 RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGY-KN 342 (498)
Q Consensus 264 ~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~-~~ 342 (498)
. ...|++++|+||+++.+ ..|+++.++++...........+.+.. ++. +.. ...+.+ +++..+ +.+ .+
T Consensus 245 ~-~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~-~~~~~a--~a~~~~--~~~~~~ 313 (456)
T 2ez2_A 245 F-SYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMP--SYG--GLA-GRDMEA--MAIGLR--EAMQYE 313 (456)
T ss_dssp H-TTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCT--TTT--TCC-HHHHHH--HHHHHH--HHTCHH
T ss_pred c-ccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcc--ccc--Ccc-hhHHHH--HHHHHH--HHhHHH
Confidence 1 12477777899997755 578887654433211111111111100 000 111 112222 122111 222 35
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecC-CCCCCHHHH-----HHHH-HhcCcEeee-ec--CCC---
Q 010897 343 IMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD-SSAHTVFEI-----SEGL-RKFGWIVPA-YT--MPA--- 409 (498)
Q Consensus 343 ~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~l-----~~~L-~~~G~~v~~-~~--~~~--- 409 (498)
..++..++++++.+.|++. ++++..+. +.+++.+.+.. ..+.+..++ +++| .++|+.+.. .. .+.
T Consensus 314 ~~~~~~~~~~~l~~~L~~~-g~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~ 391 (456)
T 2ez2_A 314 YIEHRVKQVRYLGDKLKAA-GVPIVEPV-GGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNV 391 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBCSSC-CSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTT
T ss_pred HHHHHHHHHHHHHHHHhcC-CCccccCC-CceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCcc
Confidence 5666677888999999886 47665443 45666666531 011233334 7777 688986422 11 110
Q ss_pred ----CCCCeeEEEEeecCC-CCHHHHHHHHHHHHHHHHHHHcC
Q 010897 410 ----NAENVAVLRVVVRED-FSRSLVERLISHIEEVLKEIESL 447 (498)
Q Consensus 410 ----~~~~~~~lRv~v~~~-~t~~~~~~l~~~l~~~l~~l~~~ 447 (498)
...+..++|+++... .+.++++++++.|+++++...+.
T Consensus 392 ~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 434 (456)
T 2ez2_A 392 TGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDI 434 (456)
T ss_dssp TCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGGGC
T ss_pred ccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhhhc
Confidence 012236799998765 79999999999999998765443
No 171
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.88 E-value=6.8e-21 Score=195.70 Aligned_cols=338 Identities=11% Similarity=-0.007 Sum_probs=216.9
Q ss_pred cCCCCCcccccc---cC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 53 DGNPRLNLASFV---TT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 53 ~~~p~~~~~~~~---~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
+|+..+++.+.. +. +.+|.+.+++.+.+.........+ ..+...++.+++++++|.+ .+++|+||++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~ggte 125 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVF--TNEPALRLGRKLIDATFAE-------RVLFMNSGTE 125 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTS--CCHHHHHHHHHHHHHSSCS-------EEEEESSHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCcc--CCHHHHHHHHHHHhhCCCC-------eEEEeCCHHH
Confidence 344444554431 22 246889999988887643221112 3355667888899998853 2999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCch-hHHHHHHHHcCCe------------eEEEEecCCccccCHHHH
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ-VCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKA 195 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h-~~~~~~~~~~g~~------------~~~v~~~~~~~~~d~~~L 195 (498)
|+.+++.+++..+.. .|.+ ++++|++.+++| .....++...|.+ +..+|. .|+++|
T Consensus 126 A~~~al~~~~~~~~~----~~~~-g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l 194 (420)
T 2pb2_A 126 ANETAFKLARHYACV----RHSP-FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF------NDLHAV 194 (420)
T ss_dssp HHHHHHHHHHHHHHH----HTCT-TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT------TCHHHH
T ss_pred HHHHHHHHHHHHhhh----ccCC-CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC------CCHHHH
Confidence 999999987653221 1111 134777766544 5555555555643 344442 389999
Q ss_pred HHHhhhCCeEEEEeeccCCccc----ccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeE
Q 010897 196 VELVDENTICVAAILGSTLTGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKS 270 (498)
Q Consensus 196 ~~~i~~~t~~v~~~~~~t~tG~----~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~ds 270 (498)
++++++++++|+++.+++++|. .+++++|.++|+++ |+++++|++|.++.. .......+ ++. ..|+
T Consensus 195 e~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~------gi~lI~Dev~~g~~~--~g~~~~~~~~~~-~~di 265 (420)
T 2pb2_A 195 KAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH------QALLVFDEVQCGMGR--TGDLFAYMHYGV-TPDI 265 (420)
T ss_dssp HHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSE
T ss_pred HHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc------CCEEEEEcCCcCccc--CCcHHHHHhcCC-CCCe
Confidence 9999988999988888777675 36899999999999 999999999987531 11111111 122 2566
Q ss_pred EEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 010897 271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGN 350 (498)
Q Consensus 271 i~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~ 350 (498)
+++ +|++.++.++|+++.+++ +.+.+. ......+ ++-+.....+..++|+.+.. .+..++..++
T Consensus 266 it~--sK~l~~G~~iG~~~~~~~--l~~~l~-------~~~~~~t--~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~ 329 (420)
T 2pb2_A 266 LTS--AKALGGGFPVSAMLTTQE--IASAFH-------VGSHGST--YGGNPLACAVAGAAFDIINT---PEVLQGIHTK 329 (420)
T ss_dssp EEE--CGGGGTTSCCEEEEECHH--HHTTCC-----------CCE--ECCCHHHHHHHHHHHHHHSS---HHHHHHHHHH
T ss_pred EEe--cccccCCCceEEEEEhHH--HHHhhc-------CCCcCcc--cCcCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Confidence 654 698887778999997653 211111 1001111 22233444555566665543 3556777788
Q ss_pred HHHHHHHHhcC----CCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCC
Q 010897 351 ARALREGLEKT----GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFS 426 (498)
Q Consensus 351 a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t 426 (498)
+++|.+.|+++ +.+..+.+ ..+++.|.++.....+..++.+.|.++|+.+... +..++|+++....+
T Consensus 330 ~~~l~~~L~~~~~~~~~~~~~~~--~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~-------~~~~iRl~~~~~~t 400 (420)
T 2pb2_A 330 RQQFVQHLQAIDEQFDIFSDIRG--MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA-------GADVMRFAPSLVVE 400 (420)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEE--ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES-------STTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEe--cceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC-------CCCEEEEECCCCCC
Confidence 88888888765 32332222 4577888875321125778999999999876532 13579999876789
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010897 427 RSLVERLISHIEEVLKEI 444 (498)
Q Consensus 427 ~~~~~~l~~~l~~~l~~l 444 (498)
.++++++++.|+++++++
T Consensus 401 ~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 401 EADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 172
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.88 E-value=1.2e-21 Score=201.21 Aligned_cols=294 Identities=16% Similarity=0.082 Sum_probs=194.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHH----HHHH
Q 010897 98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARY 173 (498)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~----~~~~ 173 (498)
+++++++++++|.+. .+++++|++|+.+++.++.++ +++|+++++.|.+... .++.
T Consensus 85 ~~le~~lA~l~g~~~-------~v~~~sG~~Ai~~al~al~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~~~ 144 (430)
T 3ri6_A 85 EDLEQRLKNLTGALG-------VLALGSGMAAISTAILTLARA-------------GDSVVTTDRLFGHTLSLFQKTLPS 144 (430)
T ss_dssp HHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCCchhHHHHHHHHHHH
Confidence 355566899999864 677778889998888877432 4789999999987776 6678
Q ss_pred cCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCccccccc
Q 010897 174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP 253 (498)
Q Consensus 174 ~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~ 253 (498)
+|++++.|+.+ |+++|+++++++|++|+++.++||+|.+.|+++|.++|+++ |+++++|++|+.+..
T Consensus 145 ~G~~~~~v~~~------d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~------g~~livD~a~~~~~~- 211 (430)
T 3ri6_A 145 FGIEVRFVDVM------DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAK------GIPLVVDTTMTPPYL- 211 (430)
T ss_dssp TTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTT------TCCEEEECTTSCTTT-
T ss_pred cCCEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc-
Confidence 89999998864 79999999999999999999999999999999999999999 999999999986542
Q ss_pred ccCCCCccccCCCCeeEEEEcCCccCCCCC--CeEEEEEeCCCCCCc--cccc------ccCccCCCCCCc-cccCCCch
Q 010897 254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPD--ELVF------HINYLGSDQPTF-TLNFSKGS 322 (498)
Q Consensus 254 ~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~--g~g~~~~~~~~~l~~--~~~~------~~~yl~~~~~~~-~l~~sr~~ 322 (498)
..+ . . .++|+++.|.+|++.++. -.|+++.+....+.. .+.. ...|+....... ...+..
T Consensus 212 -~~~-~--~---~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~-- 282 (430)
T 3ri6_A 212 -LEA-K--R---LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPS-- 282 (430)
T ss_dssp -CCG-G--G---GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCC--
T ss_pred -CCh-H--H---cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCC--
Confidence 111 1 1 247999999999997652 235555444322210 0000 000000000000 000111
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--C-------------cc-EEEEEecCCCCC
Q 010897 323 SQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--G-------------VP-LVAFSLKDSSAH 386 (498)
Q Consensus 323 ~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~-------------~~-~v~f~~~~~~~~ 386 (498)
...+..|..+ .+.+.+..++++..++++++.+.|++.|.++.+..|. . .+ +++|.+++ ..
T Consensus 283 ~~~~~a~l~l--~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~--~~ 358 (430)
T 3ri6_A 283 LSPHNAYLQS--LGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES--KE 358 (430)
T ss_dssp CCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--HH
T ss_pred CCHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC--HH
Confidence 1122233333 3456677888999999999999999998877443221 1 34 89999852 23
Q ss_pred CHHHHHHHHHhcCcEeeee------cC---------CC-----CCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 387 TVFEISEGLRKFGWIVPAY------TM---------PA-----NAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 387 ~~~~l~~~L~~~G~~v~~~------~~---------~~-----~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+..++.+.|...++.++-. +. +. ......++|++++. |+++.+++||++++
T Consensus 359 ~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 359 ASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp HHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 4456666665544322100 00 10 01235689999974 67788888888876
No 173
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.88 E-value=3.7e-21 Score=194.56 Aligned_cols=339 Identities=16% Similarity=0.129 Sum_probs=211.5
Q ss_pred HHHHHHHhhhccCC-CCCcccccc-cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcc
Q 010897 42 AYQVINDELMLDGN-PRLNLASFV-TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV 119 (498)
Q Consensus 42 ~~~~~~~~~~~~~~-p~~~~~~~~-~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~ 119 (498)
..+.+++.+.-.|. |.+++.+.. +.++++.+.+++. ++ .....+++++.+++++++|.+.+ ..
T Consensus 14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~------~~~~~~~~~~~~~~a~~~g~~~~----~~ 78 (374)
T 2aeu_A 14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TY------IGSSYFAEKVNEYGLKHLGGDEN----DK 78 (374)
T ss_dssp HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----ST------THHHHHHHHHHHHHHHHHTCCTT----EE
T ss_pred HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hh------cCchHHHHHHHHHHHHHhCCCCc----ce
Confidence 45556666655566 666655543 4455677777764 11 12245667888888999998421 13
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCC---chhHHHHHHHHcCCeeEEEEecCCccccCHHHHH
Q 010897 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN---VQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAV 196 (498)
Q Consensus 120 ~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~---~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~ 196 (498)
.++|+||++|+.+++.++ + +++|+++.+ .|.++...++..|++++.+ .|+++|+
T Consensus 79 ~~~~~ggt~a~~~~~~~~--~-------------gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--------~d~~~l~ 135 (374)
T 2aeu_A 79 CVGFNRTSSAILATILAL--K-------------PKKVIHYLPELPGHPSIERSCKIVNAKYFES--------DKVGEIL 135 (374)
T ss_dssp EEEESSHHHHHHHHHHHH--C-------------CSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--------SCHHHHH
T ss_pred EEEEcChHHHHHHHHHhC--C-------------CCEEEEecCCCCccHHHHHHHHHcCcEEEEe--------CCHHHHH
Confidence 799999999999988876 2 468999988 4555444778889988877 3789999
Q ss_pred HHhhhCCeE-EEEeeccCCcc-cccCHHHHHHHHHHhhcccCCCceEEEecCcccccc-cccCCCCccccCCCCeeEEEE
Q 010897 197 ELVDENTIC-VAAILGSTLTG-EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFRLPLVKSINV 273 (498)
Q Consensus 197 ~~i~~~t~~-v~~~~~~t~tG-~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~-~~~~~~~~~~~~~~~~dsi~~ 273 (498)
++ +++|++ |++++++|||| ...|+++|.++|+++ |+++|+|++|+.+.. +...+ ..... +.|+++.
T Consensus 136 ~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~-~~~~~---~~di~~~ 204 (374)
T 2aeu_A 136 NK-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNK------EAIVFVDDASGARVRLLFNQP-PALKL---GADLVVT 204 (374)
T ss_dssp TT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHTTCC-CHHHH---TCSEEEE
T ss_pred hc-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHc------CCEEEEECCcccccccccccC-Ccccc---CCcEEEe
Confidence 88 778999 99999999999 899999999999999 999999999987641 11110 01111 3688889
Q ss_pred cCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHH---
Q 010897 274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGN--- 350 (498)
Q Consensus 274 s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~--- 350 (498)
++||++.+ +++|+++.++ +.+ +.+.....+.+ ++.+.....+...++..+..+.+++..++....
T Consensus 205 S~sK~l~g-~~~G~~~~~~-~~~-~~l~~~~~~~~---------~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 272 (374)
T 2aeu_A 205 STDKLMEG-PRGGLLAGKK-ELV-DKIYIEGTKFG---------LEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLS 272 (374)
T ss_dssp ETTSSSSS-CSCEEEEEEH-HHH-HHHHHHHHTTT---------CBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH
T ss_pred cCcccccC-cceEEEEECH-HHH-HHHHHhhcccc---------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999755 6899988764 221 21111111111 122223444445555555433344444444444
Q ss_pred -HHHHHHHHhcC---CCeEEeeCCCCccEEEEEecCCCCCC---HHHHHHH-HHhcCcEeeeecCCCCCCCeeEEEEeec
Q 010897 351 -ARALREGLEKT---GRFEILSKDVGVPLVAFSLKDSSAHT---VFEISEG-LRKFGWIVPAYTMPANAENVAVLRVVVR 422 (498)
Q Consensus 351 -a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~l~~~-L~~~G~~v~~~~~~~~~~~~~~lRv~v~ 422 (498)
.+.|.+.|..+ .++.+...+ .+++.+........+ ..+++.. |.++|+.+...... ..+..++|++++
T Consensus 273 ~~~~l~~~L~~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~--~~~~~~lRi~~~ 348 (374)
T 2aeu_A 273 KIEKLNKELKAIDDNINIVYERTP--TGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM--PGASKSLRIDLT 348 (374)
T ss_dssp HHHHHHHHHTTTCTTEEEEEEECS--SEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS--CSSCCSEEEETT
T ss_pred HHHHHHHhhhhhhhccCcceeeCC--ceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC--CCCCCeEEEEcC
Confidence 46666666654 246654433 344433331110011 1225544 45689886543211 123457999986
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHHH
Q 010897 423 E-DFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 423 ~-~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
. .....+++++.+.|+++++++.
T Consensus 349 ~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 349 SRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp SGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Confidence 4 3334458899999998887764
No 174
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.88 E-value=1.7e-20 Score=190.85 Aligned_cols=319 Identities=15% Similarity=0.040 Sum_probs=204.0
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+......+..+ ......++.+++++++|.+ .+++|+||++|+..++.+++..+..
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~-------~v~~~~gg~ea~~~al~~~~~~~~~---- 119 (395)
T 3nx3_A 53 NHAKFNAKIKAQVDKLLHTSNLY--YNENIAAAAKNLAKASALE-------RVFFTNSGTESIEGAMKTARKYAFN---- 119 (395)
T ss_dssp SCHHHHHHHHHHHTTCSCCCTTS--BCHHHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc----
Confidence 46889999998887654433222 3456667888899999843 3999999999999999887654321
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHc-------------CCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCC
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYF-------------EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~-------------g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~ 214 (498)
.| .++++|++.+++|..+...+..+ +.++..++. .|+++|++++++++++|++..++++
T Consensus 120 ~g--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~~~ 191 (395)
T 3nx3_A 120 KG--VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY------NDISSVEKLVNEKTCAIILESVQGE 191 (395)
T ss_dssp TT--CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT------TCHHHHHTTCCTTEEEEEEESEECT
T ss_pred cC--CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC------CCHHHHHHhccCCeEEEEEeCccCC
Confidence 12 12467877776664332222222 223444432 2799999999988888988888888
Q ss_pred cccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCccCCCCCCeEEEE
Q 010897 215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVYAGVGWVV 289 (498)
Q Consensus 215 tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~l~~p~g~g~~~ 289 (498)
+|.+.+ +++|.++|++| |+++|+|++|+++.. .......+ ++. ..|.++++ |.+.++.++|+++
T Consensus 192 ~G~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~-~~d~~t~s--K~~~~G~~~G~~~ 260 (395)
T 3nx3_A 192 GGINPANKDFYKALRKLCDEK------DILLIADEIQCGMGR--SGKFFAYEHAQI-LPDIMTSA--KALGCGLSVGAFV 260 (395)
T ss_dssp TSCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEEEEC--GGGTTTSCCEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--CCcchhHHhcCC-CCCEEEec--ccccCCCceEEEE
Confidence 999977 99999999999 999999999987631 11111111 111 25666554 6666678899998
Q ss_pred EeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH----hcCCCeE
Q 010897 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL----EKTGRFE 365 (498)
Q Consensus 290 ~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L----~~~~~~~ 365 (498)
.+++ .+.+.+ . ......+ ++.+.....+..++++.+..+. ..++..++.+++++.| .+++.+.
T Consensus 261 ~~~~-~~~~~~--~-----~~~~~~~--~~~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (395)
T 3nx3_A 261 INQK-VASNSL--E-----AGDHGST--YGGNPLVCAGVNAVFEIFKEEK---ILENVNKLTPYLEQSLDELINEFDFCK 327 (395)
T ss_dssp ECHH-HHHHHS--C-----TTCCSSC--BSCCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred Echh-hhhhhc--C-----CcccCCC--CCCCHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 7542 101111 1 0000111 2222334444445555443333 3344444444444444 4455444
Q ss_pred EeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.+.. ..+++.|.+++ ..+..++.+.|.++|+.+... +..++|++.....|+++++++++.|+++++
T Consensus 328 ~~~~--~g~~~~~~~~~--~~~~~~~~~~l~~~Gi~v~~~-------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 328 KRKG--LGFMQGLSLDK--SVKVAKVIQKCQENALLLISC-------GENDLRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp EEEE--ETTEEEEEECT--TSCHHHHHHHHHHTTEECEEE-------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEe--EEEEEEEEeCC--cchHHHHHHHHHHCCCEEecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 4332 45788888854 246789999999999887542 245799998888899999999999998875
No 175
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.88 E-value=2e-21 Score=198.92 Aligned_cols=287 Identities=14% Similarity=0.070 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHH---
Q 010897 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR--- 172 (498)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~--- 172 (498)
...++.+++++++|.+. .+++++|++|+.+++.++.++ +++|+++++.|..+...++
T Consensus 82 ~~~~l~~~la~~~g~~~-------~~~~~sG~~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~~ 141 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAPA-------AFATASGMAAVFTSLGALLGA-------------GDRLVAARSLFGSCFVVCSEIL 141 (414)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCCT-------------TCEEEEESCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEcCCccchHHHHHHHHH
Confidence 44567777999999753 789999999998888776432 4789999999998776664
Q ss_pred -HcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCccccc
Q 010897 173 -YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI 251 (498)
Q Consensus 173 -~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~ 251 (498)
.+|++++.++++ |+++|+++++++|++|+++.++||+|.+.|+++|.++|+++ |+++++|++|+.+.
T Consensus 142 ~~~g~~~~~v~~~------d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~------g~~livDe~~~~~~ 209 (414)
T 3ndn_A 142 PRWGVQTVFVDGD------DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAA------GAKVVLDNVFATPL 209 (414)
T ss_dssp HHTTCEEEEECTT------CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHH
T ss_pred HHcCcEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 489999988863 79999999999999999999999999999999999999999 99999999998543
Q ss_pred ccccCCCCccccCCCCeeEEEEcCCccCCCCC--CeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHH
Q 010897 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY 329 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~--g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~ 329 (498)
. ..+ . . .++|+++.|.+|++.++. .+|+++.++. .+...+.......+. . ......|
T Consensus 210 ~--~~~-~--~---~g~div~~S~sK~l~~~G~~~~G~vv~~~~-~~~~~l~~~~~~~g~----------~--~~~~~a~ 268 (414)
T 3ndn_A 210 L--QQG-F--P---LGVDVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQKLMRHTGP----------A--MSAFNAW 268 (414)
T ss_dssp H--CCC-G--G---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHTTHHHHHHHHHCC----------C--CCHHHHH
T ss_pred c--CCc-h--h---cCCCeEeccCCccccCCCCceEEEEEECHH-HHHHHHHHHHHHcCC----------C--CCHHHHH
Confidence 1 111 1 1 247899999999986543 2688776543 221111111111111 1 1122344
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC----------------CccEEEEEecCCC---CCCHHH
Q 010897 330 YQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----------------GVPLVAFSLKDSS---AHTVFE 390 (498)
Q Consensus 330 ~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~~~---~~~~~~ 390 (498)
++++ +.+.+..++++..++++++.+.|++.|.+..+.-+. ..+++.|.+++.. ..+..+
T Consensus 269 ~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~ 346 (414)
T 3ndn_A 269 VLLK--GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFE 346 (414)
T ss_dssp HHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHH
Confidence 4443 334567788888999999999999998775432221 2468899985420 123556
Q ss_pred HHHHHHhcCcEeeeec------CCC--------------CCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 391 ISEGLRKFGWIVPAYT------MPA--------------NAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 391 l~~~L~~~G~~v~~~~------~~~--------------~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
+.+.|...++.++... .|. ......++|++++. |+++.++++|++++
T Consensus 347 ~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 347 VLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 7777776654332110 010 01234689999974 67777788888776
No 176
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.88 E-value=2.1e-21 Score=197.67 Aligned_cols=285 Identities=14% Similarity=0.026 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH----H
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----R 172 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~----~ 172 (498)
..++++.+++++|.+. .++++||++|+.+++.++.++ +++|+++.+.|.+....+ +
T Consensus 68 ~~~l~~~la~~~g~~~-------~~~~~sGt~A~~~al~~~~~~-------------gd~Vi~~~~~y~~~~~~~~~~~~ 127 (392)
T 3qhx_A 68 RTALEAALAAVEDAAF-------GRAFSSGMAAADCALRAMLRP-------------GDHVVIPDDAYGGTFRLIDKVFT 127 (392)
T ss_dssp HHHHHHHHHHHTTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhCC-------------CCEEEEeCCCcchHHHHHHHHHH
Confidence 4466677999998863 889999999999988876332 468999999998776665 5
Q ss_pred HcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccc
Q 010897 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA 252 (498)
Q Consensus 173 ~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~ 252 (498)
..|++++.++.+ |+++|+++++++|++|++..++|++|.+.|+++|.++|+++ |+++|+|++|+.+..
T Consensus 128 ~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------g~~li~D~~~~~~~~ 195 (392)
T 3qhx_A 128 GWNVEYTPVALA------DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADS------SAKVLVDNTFASPAL 195 (392)
T ss_dssp GGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTTT
T ss_pred hcCcEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 678888888753 79999999999999999999999999999999999999999 999999999986531
Q ss_pred cccCCCCccccCCCCeeEEEEcCCccCCCCC--CeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHH
Q 010897 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (498)
Q Consensus 253 ~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~--g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~ 330 (498)
.... . .++|+++.|.||+++++. .+|+++.++++.. ..+....... +.. ...+.+|+
T Consensus 196 ---~~~~--~---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~-~~l~~~~~~~----------g~~--~~~~~~~~ 254 (392)
T 3qhx_A 196 ---QQPL--S---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELD-QSFAFLQNGA----------GAV--PGPFDAYL 254 (392)
T ss_dssp ---CCGG--G---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH-HHHHHHHHHH----------CCC--CCHHHHHH
T ss_pred ---CChH--H---hCCcEEEEcCccccCCCCCceEEEEEECcHHHH-HHHHHHHHhc----------CCC--CCHHHHHH
Confidence 1111 1 157999999999997764 3788886643221 1111000001 111 12233444
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC----------------CccEEEEEecCCCCCCHHHHHHH
Q 010897 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----------------GVPLVAFSLKDSSAHTVFEISEG 394 (498)
Q Consensus 331 ~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~~~~~~~~~l~~~ 394 (498)
+++.+ +.+..++++..++++++.+.|++.+.+..+..+. ..++++|.+++. ..+...+.+.
T Consensus 255 ~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~~ 331 (392)
T 3qhx_A 255 TMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-RTAAEQLCAK 331 (392)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-HHHHHHHHHH
T ss_pred HHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-HHHHHHHHHh
Confidence 44433 3356678888899999999999988765432211 145889999642 1345677777
Q ss_pred HHhcCcEeeee------cCCCC-----------CCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 395 LRKFGWIVPAY------TMPAN-----------AENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 395 L~~~G~~v~~~------~~~~~-----------~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
|...|+.++.. +.|.. ......+|+|++.. +++.++++|.+++
T Consensus 332 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e----~~~~~i~~l~~al 391 (392)
T 3qhx_A 332 TNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIE----DVADLLDDLKQAL 391 (392)
T ss_dssp CSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSS----CHHHHHHHHHHHH
T ss_pred CCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccC----CHHHHHHHHHHHh
Confidence 77666544321 11110 12346799999864 4444555655544
No 177
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.88 E-value=6.7e-21 Score=193.44 Aligned_cols=283 Identities=17% Similarity=0.064 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHH----HHH
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FAR 172 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~----~~~ 172 (498)
..++++.+++++|.+. .+++++|++|+.+++.++.++ +++|+++.+.|.+... .++
T Consensus 54 ~~~l~~~la~~~~~~~-------~i~~~sGt~a~~~~~~~~~~~-------------g~~vl~~~~~~~~~~~~~~~~~~ 113 (386)
T 1cs1_A 54 RDVVQRALAELEGGAG-------AVLTNTGMSAIHLVTTVFLKP-------------GDLLVAPHDCYGGSYRLFDSLAK 113 (386)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEETTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEecCCcHhHHHHHHHHHH
Confidence 3456666888888762 444455599999988876321 4689999999986443 346
Q ss_pred HcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccc
Q 010897 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA 252 (498)
Q Consensus 173 ~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~ 252 (498)
..|++++.++.+ |+++|++++++++++|++++++|+||.+.|+++|.++|+++ |+++|+|++|+++..
T Consensus 114 ~~g~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~ 181 (386)
T 1cs1_A 114 RGCYRVLFVDQG------DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV------GAVSVVDNTFLSPAL 181 (386)
T ss_dssp TTSCEEEEECTT------CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTCTTT
T ss_pred hcCCEEEEeCCC------CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 678888888752 79999999999999999999999999999999999999999 999999999988753
Q ss_pred cccCCCCccccCCCCeeEEEEcCCccCCCCCCe--EEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHH
Q 010897 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (498)
Q Consensus 253 ~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~--g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~ 330 (498)
. .+ .. .+.|++..+.||++++|.+. |+++.++++.. +.+....... + ++. ..+.+++
T Consensus 182 ~--~~---~~---~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~-~~l~~~~~~~-------~--~~~---~~~~~~~ 240 (386)
T 1cs1_A 182 Q--NP---LA---LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV-TELAWWANNI-------G--VTG---GAFDSYL 240 (386)
T ss_dssp C--CG---GG---GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH-HHHHHHHHHH-------T--CBC---CHHHHHH
T ss_pred C--Cc---cc---cCceEEEEcCcccccCCCCceeEEEEeCcHHHH-HHHHHHHHhc-------C--CCC---CHHHHHH
Confidence 1 11 11 24789999999998877764 88887653221 1111000000 0 111 1223344
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-eC---------------CCCccEEEEEecCCCCCCHHHHHHH
Q 010897 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL-SK---------------DVGVPLVAFSLKDSSAHTVFEISEG 394 (498)
Q Consensus 331 ~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~---------------~~~~~~v~f~~~~~~~~~~~~l~~~ 394 (498)
++..+ +.+..+.++..++++++.+.|++++.+.-. .+ ....++++|.+++ +...+.+.
T Consensus 241 ~~~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 314 (386)
T 1cs1_A 241 LLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG----DEQTLRRF 314 (386)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----CHHHHHHH
T ss_pred HHhcc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC----CHHHHHHH
Confidence 33332 234566777788889999999888765432 11 1136789998853 25678889
Q ss_pred HHhcCcEeeeecC---------CCC--------------CCCeeEEEEeecCCCCHHHHHHHHHHHH
Q 010897 395 LRKFGWIVPAYTM---------PAN--------------AENVAVLRVVVREDFSRSLVERLISHIE 438 (498)
Q Consensus 395 L~~~G~~v~~~~~---------~~~--------------~~~~~~lRv~v~~~~t~~~~~~l~~~l~ 438 (498)
|.++|+.++.... |.. .....++|++++...+.+++++|.+.|+
T Consensus 315 l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~ 381 (386)
T 1cs1_A 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFR 381 (386)
T ss_dssp HHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHH
Confidence 9999988763111 100 0124689999987555555554444443
No 178
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.88 E-value=3.5e-22 Score=204.53 Aligned_cols=329 Identities=12% Similarity=0.038 Sum_probs=210.3
Q ss_pred CChHHHHHHHHH-HhccC-CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceee--ecChhHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMA-SINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--TVGSSEAIMLAGLAFKRKWQ 142 (498)
Q Consensus 67 ~~~~~~~~~l~~-~~~~n-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~g~sea~~la~~a~~~~~~ 142 (498)
++++.+.+++.+ .+... ...|....+..++++.+.+++....|.+.+. ..+++ |+|+++|+.+++..+..- .
T Consensus 47 ~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~~~t~g~~~a~~~~~~~~~~~-~ 122 (412)
T 1yaa_A 47 WVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQE---DRVISVQSLSGTGALHISAKFFSKF-F 122 (412)
T ss_dssp CCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEEEHHHHHHHHHHHHHHHH-C
T ss_pred CCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCc---ceEEEEeccchHhHHHHHHHHHHHh-C
Confidence 456788898888 77632 2234444567778888777775544432111 12888 999999998875433221 0
Q ss_pred HHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEe-cCCccccCHHHHHHHhhhC---CeEEEEeeccCCcccc
Q 010897 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDEN---TICVAAILGSTLTGEF 218 (498)
Q Consensus 143 ~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~L~~~i~~~---t~~v~~~~~~t~tG~~ 218 (498)
.+++|+++.++|..+...++..|++++.+++ +++++.+|+++|+++++++ +.++++++++||||.+
T Consensus 123 ----------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~ 192 (412)
T 1yaa_A 123 ----------PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLD 192 (412)
T ss_dssp ----------TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCC
T ss_pred ----------CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC
Confidence 1468999999999999999999999999998 5445789999999999864 4555569999999999
Q ss_pred cC---HHHHHHHHHHhhcccCCCceEEEecCccccccccc-CCCCcc-cc-CCCC---eeEEEEcCCccCCC-CCCeEEE
Q 010897 219 ED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEW-DF-RLPL---VKSINVSGHKYGLV-YAGVGWV 288 (498)
Q Consensus 219 ~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~-~~~~~~-~~-~~~~---~dsi~~s~hK~l~~-p~g~g~~ 288 (498)
.+ +++|.++|+++ |+++++|++|+++...-. .+.... ++ .... -+++..+.+|.++. +.++||+
T Consensus 193 ~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~ 266 (412)
T 1yaa_A 193 PTSEQWVQIVDAIASK------NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCF 266 (412)
T ss_dssp CCHHHHHHHHHHHHHT------TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEE
T ss_pred CCHHHHHHHHHHHHHC------CCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEE
Confidence 54 66788999999 999999999987642100 000000 11 1111 35667788998754 4568998
Q ss_pred E--E----eCCCC---CCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHH
Q 010897 289 V--W----RTKDD---LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-----FEGYKNIMENCMGNARAL 354 (498)
Q Consensus 289 ~--~----~~~~~---l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg-----~~g~~~~~~~~~~~a~~l 354 (498)
+ . ++++. +...+.. .... .+ .+.+.....+...++.... .+.+++..++..++++++
T Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~---~~~~---~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 337 (412)
T 1yaa_A 267 HLALTKQAQNKTIKPAVTSQLAK---IIRS---EV---SNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHAL 337 (412)
T ss_dssp EEECCSCTTHHHHHHHHHHHHHH---HHHT---TT---SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH---HHhh---cc---CCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 4 13220 1111100 0000 00 1111122222223332221 235677788888899999
Q ss_pred HHHHhcCC---CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHH
Q 010897 355 REGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVE 431 (498)
Q Consensus 355 ~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~ 431 (498)
.+.|++++ ++++..+ ..++++|. +.+...+...|.++|+.+.. .+|++++. .+.++++
T Consensus 338 ~~~L~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~~~gi~v~~-----------~~Ris~~~-~~~~~i~ 398 (412)
T 1yaa_A 338 RDHLVKLGTPGNWDHIVN--QCGMFSFT-----GLTPQMVKRLEETHAVYLVA-----------SGRASIAG-LNQGNVE 398 (412)
T ss_dssp HHHHHHHTCSSCCTHHHH--CCSSEEEC-----CCCHHHHHHHHHHHCEECCT-----------TSEEEGGG-CCTTTHH
T ss_pred HHHHHhhCCCCCeeeecc--CceEEEee-----CCCHHHHHHHHHhCCEEecc-----------CcEEEEcc-CCHhHHH
Confidence 99999876 3665543 34444442 13455665566688987642 27999874 5889999
Q ss_pred HHHHHHHHHHHH
Q 010897 432 RLISHIEEVLKE 443 (498)
Q Consensus 432 ~l~~~l~~~l~~ 443 (498)
++++.|+++++.
T Consensus 399 ~~~~~l~~~~~~ 410 (412)
T 1yaa_A 399 YVAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
No 179
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.88 E-value=2.6e-22 Score=204.22 Aligned_cols=321 Identities=12% Similarity=0.014 Sum_probs=207.0
Q ss_pred CChHHHHHHHHHHhcc-CCCCCcCCcchHHHHHHHHHHHHHHcCC--CCCCCCCcceee--ecChhHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVG--TVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~--t~g~sea~~la~~a~~~~~ 141 (498)
++++.+.+++.+.+.. ....|...++..++++.+.+++....+. +.+ .+++ |+|+++|+.+++.++..-
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-----~v~~~~~~g~~~a~~~~~~~~~~~- 117 (396)
T 2q7w_A 44 PVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDK-----RARTAQTPGGTGALRVAADFLAKN- 117 (396)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-----CEEEEEESHHHHHHHHHHHHHHHH-
T ss_pred cCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccc-----cEEEEecccchhhHHHHHHHHHHh-
Confidence 4568888888877654 2233444456677777766665432221 121 2666 999999999888766431
Q ss_pred HHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhh---CCeEEEEeeccCCccc
Q 010897 142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE---NTICVAAILGSTLTGE 217 (498)
Q Consensus 142 ~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~---~t~~v~~~~~~t~tG~ 217 (498)
. .+++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++ +++++++++++||||.
T Consensus 118 ~----------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~ 187 (396)
T 2q7w_A 118 T----------SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGI 187 (396)
T ss_dssp S----------CCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCC
T ss_pred C----------CCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC
Confidence 0 146899999999999999999999999999852 3478999999999975 3678888999999999
Q ss_pred ccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-c-CCCCeeEEEEcCCccCC-CCCCeEEEEE-
Q 010897 218 FED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-F-RLPLVKSINVSGHKYGL-VYAGVGWVVW- 290 (498)
Q Consensus 218 ~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~- 290 (498)
+.+ +++|.++|+++ |+++++|++|+++......+..... + .....+++..+.+|.++ ++.++|+++.
T Consensus 188 ~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~ 261 (396)
T 2q7w_A 188 DPTLEQWQTLAQLSVEK------GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLV 261 (396)
T ss_dssp CCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHC------CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEE
Confidence 854 56799999999 9999999999886421000000000 1 11123566788899875 4566899986
Q ss_pred -eCCC---CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc--------HHHHHHHHHHHHHHHHHHHHHH
Q 010897 291 -RTKD---DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEGYKNIMENCMGNARALREGL 358 (498)
Q Consensus 291 -~~~~---~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L 358 (498)
++++ .+...+.. .... .+ ++ ...+++.++...+. .+.+++..++..++++++.+.|
T Consensus 262 ~~~~~~~~~~~~~~~~---~~~~---~~---~~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 329 (396)
T 2q7w_A 262 AADSETVDRAFSQMKA---AIRA---NY---SN---PPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTL 329 (396)
T ss_dssp CSSHHHHHHHHHHHHH---HHHT---TT---SS---CCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---HHhh---cc---CC---CCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2321 11111000 0000 00 11 12233333443332 2355667777888999999999
Q ss_pred hcCC---CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHH
Q 010897 359 EKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLIS 435 (498)
Q Consensus 359 ~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~ 435 (498)
++++ ++++..+ ..+++.|. ..+...+.+.|.++|+.+.. .+|++++. .+.++++++++
T Consensus 330 ~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~~~gv~v~~-----------~~Ris~~~-~~~e~i~~~~~ 390 (396)
T 2q7w_A 330 QEKGANRDFSFIIK--QNGMFSFS-----GLTKEQVLRLREEFGVYAVA-----------SGRVNVAG-MTPDNMAPLCE 390 (396)
T ss_dssp HHTTCCSCCTHHHH--CCSSEEEC-----CCCHHHHHHHHHHHCEECCT-----------TCEEEGGG-CCTTTHHHHHH
T ss_pred HhcCCCCCcceecC--CCceEEEe-----cCCHHHHHHHHHhcCeeecC-----------CceEEEee-cCHHHHHHHHH
Confidence 9886 3555433 33444431 12345677778889987642 16999974 38899999888
Q ss_pred HHHHH
Q 010897 436 HIEEV 440 (498)
Q Consensus 436 ~l~~~ 440 (498)
.|+++
T Consensus 391 ~l~~~ 395 (396)
T 2q7w_A 391 AIVAV 395 (396)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88765
No 180
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.88 E-value=4.2e-22 Score=202.57 Aligned_cols=325 Identities=10% Similarity=-0.008 Sum_probs=205.4
Q ss_pred CChHHHHHHHHHHhcc-CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceee--ecChhHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--TVGSSEAIMLAGLAFKRKWQQ 143 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~g~sea~~la~~a~~~~~~~ 143 (498)
++++.+.+++.+.+.. ....|....+..++++++.+++... +.+. ..+++ |+|+++|+.+++.++... .
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~-----~~v~~~~~~g~~~a~~~~~~~~~~~-~- 115 (394)
T 2ay1_A 44 PIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKS-----ETTATLATVGGTGALRQALELARMA-N- 115 (394)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCG-----GGEEEEEEEHHHHHHHHHHHHHHHH-C-
T ss_pred cCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCc-----ccEEEEecCCchhHHHHHHHHHHhc-C-
Confidence 4467888888877653 2223434445667777766555321 2222 23777 999999999988776541 0
Q ss_pred HHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecC-CccccCHHHHHHHhhhC---CeEEEEeeccCCccccc
Q 010897 144 KRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDEN---TICVAAILGSTLTGEFE 219 (498)
Q Consensus 144 ~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~L~~~i~~~---t~~v~~~~~~t~tG~~~ 219 (498)
.+++|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++. ++++++++++||||.+.
T Consensus 116 ---------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~ 186 (394)
T 2ay1_A 116 ---------PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL 186 (394)
T ss_dssp ---------TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCC
T ss_pred ---------CCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence 146899999999999999999999999999862 34789999999999753 66777899999999996
Q ss_pred C---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-c-CCCCeeEEEEcCCccCC-CCCCeEEEEE--e
Q 010897 220 D---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-F-RLPLVKSINVSGHKYGL-VYAGVGWVVW--R 291 (498)
Q Consensus 220 ~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~-~~~~~dsi~~s~hK~l~-~p~g~g~~~~--~ 291 (498)
| +++|.++|+++ |+++++|++|+++......+..... + ....-+.+..+.+|+++ ++.++|+++. +
T Consensus 187 ~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~ 260 (394)
T 2ay1_A 187 TLDQWAEIASILEKT------GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCA 260 (394)
T ss_dssp CHHHHHHHHHHHHHH------TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHC------CCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeC
Confidence 5 56789999999 9999999999886521000000000 1 11112355668899886 5667899987 2
Q ss_pred CCCCCCcccccccC-ccCCCCCCccccCCCchHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHHhcCC---
Q 010897 292 TKDDLPDELVFHIN-YLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-----GFEGYKNIMENCMGNARALREGLEKTG--- 362 (498)
Q Consensus 292 ~~~~l~~~~~~~~~-yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~--- 362 (498)
+++.+ +.+..... .... .+ .+. +.....+...++... -.+.+++..++..++++++.+.|++++
T Consensus 261 ~~~~~-~~l~~~~~~~~~~---~~--~~~-~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 333 (394)
T 2ay1_A 261 DAATR-ELAQGAMAFLNRQ---TY--SFP-PFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD 333 (394)
T ss_dssp SHHHH-HHHHHHHHHHHHT---TT--SSC-CCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHH-HHHHHHHHHHHhh---hc--CCC-ChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 32211 11000000 0000 00 011 112222222233211 024567777888889999999998865
Q ss_pred CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 363 RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 363 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
++++..+. ...++.+.+ +...+.+.|.++|+.+.. .+|++++ .+++++++++++.|+++
T Consensus 334 ~~~~~~~~-~g~~~~~~~------~~~~~~~~l~~~gi~v~~-----------~~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 334 RFGFVAEH-RGMFSRLGA------TPEQVKRIKEEFGIYMVG-----------DSRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp TTTHHHHC-CSSEEECCC------CHHHHHHHHHHHCEECCT-----------TCEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred CeeEEcCC-ceEEEeeCC------CHHHHHHHHHhCCEEecC-----------CCeEEee-cCCHhhHHHHHHHHHHc
Confidence 35554332 334433333 345677778889987642 1699987 46889999988888765
No 181
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.88 E-value=1.3e-21 Score=194.17 Aligned_cols=282 Identities=18% Similarity=0.101 Sum_probs=187.6
Q ss_pred HHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH----HHc
Q 010897 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RYF 174 (498)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~----~~~ 174 (498)
++++.+++++|.+. .+++++|++|+.+++.++.++ +++|+++.++|.++...+ +..
T Consensus 2 ~l~~~la~~~g~~~-------~i~~~sG~~a~~~~~~~~~~~-------------g~~v~~~~~~~~~~~~~~~~~~~~~ 61 (331)
T 1pff_A 2 ALEGKIAKLEHAEA-------CAATASGMGAIAASVWTFLKA-------------GDHLISDDCLYGCTHALFEHQLRKF 61 (331)
T ss_dssp HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEEESCCCHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHhCCCe-------EEEeCChHHHHHHHHHHhcCC-------------CCEEEEcCCCcchHHHHHHHHHHhc
Confidence 35566899999862 566666699999888876321 468999999999877664 457
Q ss_pred CCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHH-hhcccCCCceEEEecCccccccc
Q 010897 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVDAASGGFIAP 253 (498)
Q Consensus 175 g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~-~~~~~~~~~~l~vD~A~~g~~~~ 253 (498)
|++++.++. +|+++|+++++++|++|++++++|+||.+.|+++|.++|++ + |+++++|++|+.+...
T Consensus 62 g~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~------~~~li~D~a~~~~~~~ 129 (331)
T 1pff_A 62 GVEVDFIDM------AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQK------DILVIVDNTFASPILT 129 (331)
T ss_dssp TCEEEEECT------TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS------SCEEEEECTTTHHHHC
T ss_pred CCEEEEeCC------CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhc------CCEEEEECCCcccccC
Confidence 998888874 47889999999899999999999999999999999999999 9 9999999999876531
Q ss_pred ccCCCCccccCCCCeeEEEEcCCccCCCCCC--eEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHH
Q 010897 254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQ 331 (498)
Q Consensus 254 ~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g--~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~ 331 (498)
.+ . + .+.|++..|+||++++|.+ +|+++.++++.. +.+.....+ . ++ ++.+ .+.++++
T Consensus 130 --~~-~--~---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~-~~l~~~~~~--~----~~--~~~~---~~~~~~~ 189 (331)
T 1pff_A 130 --NP-L--D---LGVDIVVHSATKYINGHTDVVAGLVCSRADIIA-KVKSQGIKD--I----TG--AIIS---PHDAWLI 189 (331)
T ss_dssp --CG-G--G---GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHH-HHHHTCCCC--C----CC--CCCC---HHHHHHH
T ss_pred --Ch-h--h---cCCcEEEEECccccCCCCCceEEEEEeCcHHHH-HHHHHHHHh--h----cC--CCCC---HHHHHHH
Confidence 11 1 1 2479999999999887766 788887642221 111110000 0 00 1121 1233333
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CeEEeeCC--CCccEEEEEecCCCCCCHHHHHHHH
Q 010897 332 FIRLGFEGYKNIMENCMGNARALREGLEKTG--------------RFEILSKD--VGVPLVAFSLKDSSAHTVFEISEGL 395 (498)
Q Consensus 332 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~--------------~~~~~~~~--~~~~~v~f~~~~~~~~~~~~l~~~L 395 (498)
+..+. .+..+.++..++.+.+.+.|++.+ +++++.+. ...++++|.++ +..++.+.|
T Consensus 190 ~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l 262 (331)
T 1pff_A 190 TRGTL--TLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-----GLEKAKKVL 262 (331)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-----SHHHHHHHH
T ss_pred HcCcc--hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-----CHHHHHHHH
Confidence 32221 233344445555555555555432 23222211 13578888874 456888999
Q ss_pred HhcCcEeeeec---------CCC--------------CCCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 396 RKFGWIVPAYT---------MPA--------------NAENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 396 ~~~G~~v~~~~---------~~~--------------~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
.++|+.++... .+. ......++|++++...+.++++++++.|++
T Consensus 263 ~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 263 DNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp HTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 99998764331 000 011246899999988888888877777654
No 182
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.88 E-value=2.2e-20 Score=192.39 Aligned_cols=341 Identities=11% Similarity=0.019 Sum_probs=193.9
Q ss_pred hHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 010897 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ 148 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~ 148 (498)
+|.+.+++.+.+...... ...........++.++++++++.+.+ .+++|+||++|+..++.+++..+.. .
T Consensus 47 ~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~~-----~v~~~~gg~ea~~~al~~~~~~~~~----~ 116 (430)
T 3i4j_A 47 RAEVGERMAAQAARLPFV-HGSQFSSDVLEEYAGRLARFVGLPTF-----RFWAVSGGSEATESAVKLARQYHVE----R 116 (430)
T ss_dssp CHHHHHHHHHHHHHCCCC-CTTTCEEHHHHHHHHHHHHHTTCTTC-----EEEEESSHHHHHHHHHHHHHHHHHH----T
T ss_pred CHHHHHHHHHHHHhcccc-cccccCCHHHHHHHHHHHHhCCCCCC-----EEEEeCcHHHHHHHHHHHHHHHHHh----c
Confidence 688888888887653322 22223445666888899999986542 4999999999999999988764322 1
Q ss_pred CCCCCCcEEEEcCCchhHHHHHHHHcCC---------------eeEEEEecCC--ccccCHHHHHHHhh----hCCeEEE
Q 010897 149 GKPYDKPNIVTGANVQVCWEKFARYFEV---------------ELKEVKLEEG--YYVMNPVKAVELVD----ENTICVA 207 (498)
Q Consensus 149 g~~~~~~~Iv~s~~~h~~~~~~~~~~g~---------------~~~~v~~~~~--~~~~d~~~L~~~i~----~~t~~v~ 207 (498)
|.+ +++.|++.+++|..+...+..++. ++..+|.++. .+..|+++|+++++ +++.+|+
T Consensus 117 g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi 195 (430)
T 3i4j_A 117 GEP-GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFM 195 (430)
T ss_dssp TCT-TCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEE
T ss_pred CCC-CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEE
Confidence 211 245788877777655544333332 3444444321 02357789999987 3445555
Q ss_pred EeeccC-CcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-c-CCCCeeEEEEcCCccCC
Q 010897 208 AILGST-LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-F-RLPLVKSINVSGHKYGL 280 (498)
Q Consensus 208 ~~~~~t-~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~-~~~~~dsi~~s~hK~l~ 280 (498)
+...++ ++|.+.+ +++|.++|+++ |+++|+|++|.++.. ........ + +. ..|.++++ |.+.
T Consensus 196 ~~p~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~~~--~g~~~~~~~~~~~-~~di~t~s--K~l~ 264 (430)
T 3i4j_A 196 AEPVVGASDAALAPAPGYYERVRDICDEA------GIIFIADEVMSGMGR--CGSPLALSRWSGV-TPDIAVLG--KGLA 264 (430)
T ss_dssp ECSSCCGGGTTCCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTTC-CCSEEEEC--GGGT
T ss_pred EcCcccCcCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--ccchhhhhhhcCC-CCcEEEEc--cccc
Confidence 555555 7788777 99999999999 999999999987631 11111101 1 11 24566554 8776
Q ss_pred CC-CCeEEEEEeCCCCCCccccccc-CccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH---
Q 010897 281 VY-AGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALR--- 355 (498)
Q Consensus 281 ~p-~g~g~~~~~~~~~l~~~~~~~~-~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~--- 355 (498)
++ .++|+++.+. +.. +.+.... .+.. ..+ ++-+.....+..++|..+..+. ..++..++.++++
T Consensus 265 ~G~~r~G~~~~~~-~i~-~~~~~~~~~~~~----~~t--~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~l 333 (430)
T 3i4j_A 265 AGYAPLAGLLAAP-QVY-ETVMGGSGAFMH----GFT--YAGHPVSVAAGLSVLDIVERED---LTGAAKERGAQLLAGL 333 (430)
T ss_dssp TTSSCCEEEEECH-HHH-HHHHHTTCBCCC----CCT--TTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred CCccccEEEEECH-HHH-HHHhccCCcccc----cCC--CCCCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHH
Confidence 66 7789988643 221 2111100 0111 111 1222233334444454443333 3344444444444
Q ss_pred -HHHhcCCCeEEeeCCCCccEEEEEecCCC-------CCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCH
Q 010897 356 -EGLEKTGRFEILSKDVGVPLVAFSLKDSS-------AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSR 427 (498)
Q Consensus 356 -~~L~~~~~~~~~~~~~~~~~v~f~~~~~~-------~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~ 427 (498)
+.+.+++.+..+.+ ..+++.+.+.+.. .....++.+.|.++|+.+.....+....+..++|+++....++
T Consensus 334 ~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~ 411 (430)
T 3i4j_A 334 QALQARFPQMMQVRG--TGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITA 411 (430)
T ss_dssp HHHHHHCTTEEEEEE--ETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCH
T ss_pred HHHHHhCCCeEEEEE--EEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCH
Confidence 44445565655433 4567777774211 1123679999999998875432222223456899998777899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010897 428 SLVERLISHIEEVLKEI 444 (498)
Q Consensus 428 ~~~~~l~~~l~~~l~~l 444 (498)
++++++++.|+++++++
T Consensus 412 e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 412 AEVDGLLALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998754
No 183
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.87 E-value=4.5e-21 Score=196.26 Aligned_cols=285 Identities=14% Similarity=0.063 Sum_probs=185.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH----HH
Q 010897 98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RY 173 (498)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~----~~ 173 (498)
+++++.+|+++|.+. .++++||++|+.+++.++.++ +++||++.+.|.+....+ +.
T Consensus 85 ~~le~~lA~l~g~~~-------~i~~ssGt~Ai~~al~~l~~~-------------Gd~Vi~~~~~y~~~~~~~~~~l~~ 144 (415)
T 2fq6_A 85 FSLQQAMCELEGGAG-------CVLFPCGAAAVANSILAFIEQ-------------GDHVLMTNTAYEPSQDFCSKILSK 144 (415)
T ss_dssp HHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCCT-------------TCEEEEETTSCHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHHH
Confidence 355566899999753 677789999999888775332 478999999998766544 45
Q ss_pred cCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHH--hhcccCCCceEEEecCccccc
Q 010897 174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFI 251 (498)
Q Consensus 174 ~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~--~~~~~~~~~~l~vD~A~~g~~ 251 (498)
.|++++.++.+ |+++|+++|+++|++|++.+++|++|.+.|+++|+++|++ + |+++|+|++|+.++
T Consensus 145 ~G~~v~~v~~~------d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~------g~~livD~a~a~~~ 212 (415)
T 2fq6_A 145 LGVTTSWFDPL------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVP------DAIIMIDNTWAAGV 212 (415)
T ss_dssp GTCEEEEECTT------CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCT------TCEEEEECTTTTTT
T ss_pred cCcEEEEECCC------CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcC------CCEEEEECCCcccc
Confidence 68888888642 7889999999999999999999999999999999999999 9 99999999998653
Q ss_pred ccccCCCCccccCCCCeeEEEEcCCccCCCCCC--eEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHH
Q 010897 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY 329 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g--~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~ 329 (498)
. .... . .++|+++.|+||+++++.+ .|+++.++ +.+ ..+.......+ +.. .....|
T Consensus 213 ~---~~p~--~---~g~Div~~S~sK~lg~~g~~~~G~l~~~~-~~~-~~l~~~~~~~G----------~~~--~~~~a~ 270 (415)
T 2fq6_A 213 L---FKAL--D---FGIDVSIQAATKYLVGHSDAMIGTAVCNA-RCW-EQLRENAYLMG----------QMV--DADTAY 270 (415)
T ss_dssp S---SCGG--G---GTCSEEEEETTTTTTCSSSCCCEEEEECT-TTH-HHHHHHHHHTT----------CCC--CHHHHH
T ss_pred c---CCcc--c---cCCeEEEEeCccccCCCCCceEEEEEeCH-HHH-HHHHHHHHhcC----------CCC--CHHHHH
Confidence 1 1111 1 2589999999999977654 58877654 322 21111111111 111 111233
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-eCC---------------CCccEEEEEecCC-CCCCHHHHH
Q 010897 330 YQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL-SKD---------------VGVPLVAFSLKDS-SAHTVFEIS 392 (498)
Q Consensus 330 ~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~---------------~~~~~v~f~~~~~-~~~~~~~l~ 392 (498)
..++. .+.+..++++..++++.+.+.|++.+.+.-+ .+. ...++++|.+++. ...+...+.
T Consensus 271 ~~~~~--l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l 348 (415)
T 2fq6_A 271 ITSRG--LRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYL 348 (415)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHH
T ss_pred HHHhh--hhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHH
Confidence 33322 2455677888888999999999988765422 211 1357899999641 012334455
Q ss_pred HHHHhcCcEeeee------cC--C---C-------CCCCeeEEEEeecCCCCHHHHHHHHHHHH
Q 010897 393 EGLRKFGWIVPAY------TM--P---A-------NAENVAVLRVVVREDFSRSLVERLISHIE 438 (498)
Q Consensus 393 ~~L~~~G~~v~~~------~~--~---~-------~~~~~~~lRv~v~~~~t~~~~~~l~~~l~ 438 (498)
+.|...++.++.. .. | . .......+|+|++...+.++++.|.++|+
T Consensus 349 ~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~ 412 (415)
T 2fq6_A 349 DNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA 412 (415)
T ss_dssp TTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 5444333222211 00 1 0 11224789999987666665655554443
No 184
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.87 E-value=5.9e-20 Score=189.44 Aligned_cols=338 Identities=12% Similarity=0.000 Sum_probs=205.0
Q ss_pred CCCCCcccccc---cCC-ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHH
Q 010897 54 GNPRLNLASFV---TTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129 (498)
Q Consensus 54 ~~p~~~~~~~~---~~~-~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea 129 (498)
|+..+++.+.. +.+ .+|.+.+++.+.+.........+ ......++.+.+++++|.+ .+.+|+||++|
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~sGseA 134 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAF--FSVPLGICERYLTNLLGYD-------KVLMMNTGAEA 134 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTS--EEHHHHHHHHHHHHHHTCS-------EEEEESSHHHH
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCc--CCHHHHHHHHHHHhhcCCC-------eEEEeCCHHHH
Confidence 44444555522 223 57889999998887643211122 3345556777888888753 29999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCch-hHHHHHHHHcC------------CeeEEEEecCCccccCHHHHH
Q 010897 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ-VCWEKFARYFE------------VELKEVKLEEGYYVMNPVKAV 196 (498)
Q Consensus 130 ~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h-~~~~~~~~~~g------------~~~~~v~~~~~~~~~d~~~L~ 196 (498)
+..++.+++..... ..|...++++|++.+++| .+...++...| .++..+|. .|+++|+
T Consensus 135 ~~~al~~a~~~~~~---~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le 205 (433)
T 1z7d_A 135 NETAYKLCRKWGYE---VKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY------DDLEALE 205 (433)
T ss_dssp HHHHHHHHHHHHHH---TSCCCTTCCEEEEETTC--------------------------CEEEECT------TCHHHHH
T ss_pred HHHHHHHHHHHhhh---ccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC------CCHHHHH
Confidence 99999887532110 112211236787777654 44444444444 23333432 3899999
Q ss_pred HHh-hhCCeEEEEeeccCCccccc----CHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeE
Q 010897 197 ELV-DENTICVAAILGSTLTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKS 270 (498)
Q Consensus 197 ~~i-~~~t~~v~~~~~~t~tG~~~----~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~ds 270 (498)
+++ ++++++|++...++++|.+. ++++|.++|+++ |+++++|++|.++.. .......+ ++. ..|.
T Consensus 206 ~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~g~--~g~~~~~~~~~~-~~di 276 (433)
T 1z7d_A 206 EELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY------NVLFVADEVQTGLGR--TGKLLCVHHYNV-KPDV 276 (433)
T ss_dssp HHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSE
T ss_pred HHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--CCcchhhHhcCC-CCCE
Confidence 999 56677766665556678765 899999999999 999999999987531 11111111 121 3566
Q ss_pred EEEcCCccCCCC-CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 010897 271 INVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMG 349 (498)
Q Consensus 271 i~~s~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~ 349 (498)
+++ .|.+.++ .++|+++.+++ .. +.+ .......+ ++-+.....+..++++.+..+ +..++..+
T Consensus 277 ~t~--sK~l~~G~~~~G~v~~~~~-~~-~~l-------~~~~~~~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~ 340 (433)
T 1z7d_A 277 ILL--GKALSGGHYPISAVLANDD-IM-LVI-------KPGEHGST--YGGNPLAASICVEALNVLINE---KLCENAEK 340 (433)
T ss_dssp EEE--CGGGGTTSSCCEEEEECHH-HH-TTC-------CTTCCCCT--TTTCHHHHHHHHHHHHHHHHT---THHHHHHH
T ss_pred EEE--CccccCCCCCeEEEEECHH-HH-hhh-------cccccccc--CCCCHHHHHHHHHHHHHHHhc---cHHHHHHH
Confidence 644 5887766 67999987642 21 111 11011111 222234444555566555433 45667777
Q ss_pred HHHHHHHHHhcC----CCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCC
Q 010897 350 NARALREGLEKT----GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDF 425 (498)
Q Consensus 350 ~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~ 425 (498)
+++++.+.|+++ +.+..+.. ..+++.+.+++. ..+..++.++|.++|+.+... +..++|+++....
T Consensus 341 ~~~~l~~~L~~l~~~~~~~~~~~~--~g~~~~i~~~~~-~~~~~~~~~~l~~~Gv~v~~~-------~~~~iRi~~~~~~ 410 (433)
T 1z7d_A 341 LGGPFLENLKRELKDSKIVRDVRG--KGLLCAIEFKNE-LVNVLDICLKLKENGLITRDV-------HDKTIRLTPPLCI 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEE--ETTEEEEEECTT-TCCHHHHHHHHHHTTEECCEE-------TTTEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEe--eeeEEEEEEccC-hhHHHHHHHHHHHCCeEEecC-------CCCEEEEECCcCC
Confidence 888888888764 32222222 456788888532 135778999999999886532 2457999987778
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 010897 426 SRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 426 t~~~~~~l~~~l~~~l~~l 444 (498)
|.++++++++.|+++++.+
T Consensus 411 t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 411 TKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 185
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.87 E-value=5.1e-21 Score=202.37 Aligned_cols=354 Identities=13% Similarity=0.059 Sum_probs=222.2
Q ss_pred cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcC--CCCCCCCCcceeeecChhHHHHHHHHHHHHHHH
Q 010897 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN--TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (498)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g--~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~ 142 (498)
+..++|.+.+.+.+.+..+. ++....+..++++.+.+++++.++ .+... ...+++|+|+++|+.+++.++...
T Consensus 113 ~~~~~~~~v~a~~~~~~~~~-y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~--~~~i~~t~G~t~al~~~~~~l~~~-- 187 (533)
T 3f6t_A 113 LGLNRDKVVAEWVNGAVANN-YPVPDRCLVNTEKIINYFLQELSYKDANLAE--QTDLFPTEGGTAAIVYAFHSLAEN-- 187 (533)
T ss_dssp TCCCHHHHHHHHHHHHHTCS-CCSSSSCCHHHHHHHHHHHHHHHTTTCCCGG--GEEEEEEEHHHHHHHHHHHHHHHT--
T ss_pred CCcCCcHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHHHHHhcCCCCCCCC--cceEEEECCHHHHHHHHHHHhhhh--
Confidence 33445555554444444322 233455778899998888877633 33211 124899999999999988874321
Q ss_pred HHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec---CCccccCHHHHHHHhhhCCeEEEEeeccCCccccc
Q 010897 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE---EGYYVMNPVKAVELVDENTICVAAILGSTLTGEFE 219 (498)
Q Consensus 143 ~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~---~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~ 219 (498)
+.-..+++|+++.++|.++...++..|++++.++++ ++++.+|+++|++++++++++|++++|+||||.+.
T Consensus 188 ------~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~ 261 (533)
T 3f6t_A 188 ------HLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEF 261 (533)
T ss_dssp ------TSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCC
T ss_pred ------hccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCcccc
Confidence 011124799999999999999999999999999985 34588999999999999999999999999999997
Q ss_pred CHH---HHHHHHH-HhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-CCCCeEEEEEeCCC
Q 010897 220 DVK---LLHDLLT-KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKD 294 (498)
Q Consensus 220 ~l~---~I~~la~-~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~~~ 294 (498)
+.+ +|.++|+ ++ ++++++|++|+++... .+.... ..+..+.+..|.+|.++ .+.++|+++.++..
T Consensus 262 ~~~~l~~l~~la~~~~------~~~li~De~y~~~~~~--~~~~~~--~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~ 331 (533)
T 3f6t_A 262 DTNALNAIKQAVEKNP------KLMIISDEVYGAFVPN--FKSIYS--VVPYNTMLVYSYSKLFGCTGWRLGVIALNEKN 331 (533)
T ss_dssp CHHHHHHHHHHHHHCT------TCEEEEECTTGGGSTT--CCCHHH--HSGGGEEEEEESHHHHTCGGGCEEEEEEESSC
T ss_pred CHHHHHHHHHHHHhCC------CCEEEEcCCccccccC--ccCHhh--cCCCCEEEEecCcccCCCcccceEEEEECcHH
Confidence 766 7777887 58 9999999999987521 111110 12345678889999874 56679999987652
Q ss_pred CCCcc---cc------cccCc-------------------cCCCCCCccccCCCchHHHHHHHHHHHHh--------cHH
Q 010897 295 DLPDE---LV------FHINY-------------------LGSDQPTFTLNFSKGSSQIIAQYYQFIRL--------GFE 338 (498)
Q Consensus 295 ~l~~~---~~------~~~~y-------------------l~~~~~~~~l~~sr~~~~~~a~~~~l~~l--------g~~ 338 (498)
.+... +. ....| +... ......+.....+......++..+ ...
T Consensus 332 ~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~-~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~ 410 (533)
T 3f6t_A 332 VFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSI-GLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDP 410 (533)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTT-TTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCH
T ss_pred HHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHH-HHhcccCCChHHHHHHHHHHHHHHhhhccccchHH
Confidence 21100 00 00000 0111 111111111111222111134443 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCC-----C---------CCCHHHHHHHHH-hcCcEee
Q 010897 339 GYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDS-----S---------AHTVFEISEGLR-KFGWIVP 403 (498)
Q Consensus 339 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~-----~---------~~~~~~l~~~L~-~~G~~v~ 403 (498)
..++..+.+.+++++|.+.|. ++ +.+..+. ...++.+.++.. . ..+..+++.+|. ++|+.+.
T Consensus 411 ~~~~~~~~~~~r~~~l~~~L~-~~-~~~~~~~-~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~ 487 (533)
T 3f6t_A 411 YIDIARKLVSERYDQLHDAMQ-AP-KDETDTN-THYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLV 487 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CC-CCCSTTB-CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CC-ccccCCC-ceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEe
Confidence 456777778889999999997 65 5543322 333444455310 0 124456666654 6798764
Q ss_pred eecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 404 AYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 404 ~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
...... .+.+++|+++. ..+.++++++++.|.++++++.+
T Consensus 488 pg~~f~--~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 488 DGVGFG--AKPGELRVSQA-NLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp TTEEEC--SSTTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccC--CCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHH
Confidence 322111 12457999984 35789999999999999877643
No 186
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.87 E-value=2.6e-20 Score=191.29 Aligned_cols=330 Identities=12% Similarity=0.015 Sum_probs=205.5
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
++|.+.+++.+.+......... ........++++.++++++.+. ...+++|+|+++|+.+++..++.- .
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~----~~~v~~~~g~~~a~~~~~~~a~~~-~----- 126 (426)
T 1sff_A 58 LHPKVVAAVEAQLKKLSHTCFQ-VLAYEPYLELCEIMNQKVPGDF----AKKTLLVTTGSEAVENAVKIARAA-T----- 126 (426)
T ss_dssp TCHHHHHHHHHHTTTCSCCCTT-TEECHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHH-H-----
T ss_pred CCHHHHHHHHHHHHhCCCcccc-ccCCHHHHHHHHHHHHhCCccc----ccEEEEeCchHHHHHHHHHHHHHh-h-----
Confidence 5688999998888653221101 1122334466777888883221 123899999999999988743221 0
Q ss_pred cCCCCCCcEEEEcCCch-hHHHHHHHHcCCe-------------eEEEEecC----CccccCHHHHHHHhh-----hCCe
Q 010897 148 QGKPYDKPNIVTGANVQ-VCWEKFARYFEVE-------------LKEVKLEE----GYYVMNPVKAVELVD-----ENTI 204 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h-~~~~~~~~~~g~~-------------~~~v~~~~----~~~~~d~~~L~~~i~-----~~t~ 204 (498)
+ +..|++.+++| ..+..++...|.+ ++.+|++. .++.+|+++|+++++ ++++
T Consensus 127 -~----~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 201 (426)
T 1sff_A 127 -K----RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIA 201 (426)
T ss_dssp -T----CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEE
T ss_pred -C----CCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceE
Confidence 0 13677666554 5555566666653 67777753 124589999999997 4566
Q ss_pred EEEEee-ccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccC
Q 010897 205 CVAAIL-GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG 279 (498)
Q Consensus 205 ~v~~~~-~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l 279 (498)
+|+++. ++| ||.+.+ +++|.++|+++ |++|++|++|+++.. ..+....+..-..+|.+ +.+|++
T Consensus 202 ~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~di~--s~sK~~ 270 (426)
T 1sff_A 202 AIVIEPVQGE-GGFYASSPAFMQRLRALCDEH------GIMLIADEVQSGAGR--TGTLFAMEQMGVAPDLT--TFAKSI 270 (426)
T ss_dssp EEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTSCCSEE--EECGGG
T ss_pred EEEEecccCC-CCcccCCHHHHHHHHHHHHHc------CCEEEEechhhccCc--ccchhhhhhcCCCCCEE--EEcccc
Confidence 666543 345 997777 99999999999 999999999997531 11111111110125655 446988
Q ss_pred CCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh
Q 010897 280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (498)
Q Consensus 280 ~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 359 (498)
.++.++|+++.++. .+ +.+. ......+ ++.+.....++.++++.+..+ +..++..++++++.+.|+
T Consensus 271 ~~GlriG~~~~~~~-~~-~~l~-------~~~~~~~--~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~ 336 (426)
T 1sff_A 271 AGGFPLAGVTGRAE-VM-DAVA-------PGGLGGT--YAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLL 336 (426)
T ss_dssp GTSSCCEEEEEEHH-HH-TTSC-------TTSBCCS--SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEcHH-HH-hhhc-------cCCcCcC--CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH
Confidence 76666899998752 21 1111 0000111 222334445555666655443 345666677777777776
Q ss_pred c----CCCeEEeeCCCCccEEEEEecC------CCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHH
Q 010897 360 K----TGRFEILSKDVGVPLVAFSLKD------SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSL 429 (498)
Q Consensus 360 ~----~~~~~~~~~~~~~~~v~f~~~~------~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~ 429 (498)
+ ++.+....+ ..+++.+++.+ +...+..++.++|.++|+.+..... ...++|+++....+.++
T Consensus 337 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-----~~~~iRi~~~~~~~~~~ 409 (426)
T 1sff_A 337 AIAEKHPEIGDVRG--LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP-----YYNVLRILVPLTIEDAQ 409 (426)
T ss_dssp HHHHTCTTEEEEEE--ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-----TSCEEEECCCTTCCHHH
T ss_pred HHHHhCCCeEEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-----CCCEEEEECCccCCHHH
Confidence 5 443333222 35788888842 1123467899999999988754321 24679999877889999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010897 430 VERLISHIEEVLKEIE 445 (498)
Q Consensus 430 ~~~l~~~l~~~l~~l~ 445 (498)
++++++.|+++++.++
T Consensus 410 i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 410 IRQGLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987653
No 187
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.87 E-value=1.4e-20 Score=191.45 Aligned_cols=282 Identities=16% Similarity=0.108 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHH----HH
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----AR 172 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~----~~ 172 (498)
..++++++++++|.+. .+++++|++|+.+++.++.++ +++|+++.+.|.++... ++
T Consensus 61 ~~~l~~~la~~~g~~~-------~i~~~sG~~ai~~~~~~~~~~-------------gd~vl~~~~~y~~~~~~~~~~~~ 120 (389)
T 3acz_A 61 VEQFEEMVCSIEGAAG-------SAAFGSGMGAISSSTLAFLQK-------------GDHLIAGDTLYGCTVSLFTHWLP 120 (389)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHTTTCCT-------------TCEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHH
Confidence 4466677999998863 777788889998888766321 46899999999976555 67
Q ss_pred HcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccc
Q 010897 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA 252 (498)
Q Consensus 173 ~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~ 252 (498)
..|++++.++. .|+++|+++++++|++|+++.++||+|.+.|+++|.++|+++ |+++++|++|+.+..
T Consensus 121 ~~g~~~~~v~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~------~~~livD~~~~~~~~ 188 (389)
T 3acz_A 121 RFGIEVDLIDT------SDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHER------GARLVVDATFTSPCF 188 (389)
T ss_dssp HTTCEEEEECT------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTTT
T ss_pred HcCCEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 78999988875 489999999999999999999999999999999999999999 999999999987642
Q ss_pred cccCCCCccccCCCCeeEEEEcCCccCCCCCC--eEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHH
Q 010897 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (498)
Q Consensus 253 ~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g--~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~ 330 (498)
... .+ .++|++..|.||++++|.+ +|+++.++++.. +.+.....+.+. +. ....+|+
T Consensus 189 ---~~~--~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~-~~l~~~~~~~g~---------~~---~~~~~~~ 247 (389)
T 3acz_A 189 ---LKP--LE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDI-ATIKFYRKDAGS---------LM---APMDAFL 247 (389)
T ss_dssp ---CCG--GG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH-HHHHHHHHHHCC---------CC---CHHHHHH
T ss_pred ---cCc--cc---cCCeEEEECChhhccCCCCceeEEEEECcHHHH-HHHHHHHHhcCC---------CC---CHHHHHH
Confidence 111 11 2589999999999988776 588887642221 111111111111 11 1123444
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCC----------------CCccEEEEEecCCCCCCHHHHHHH
Q 010897 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD----------------VGVPLVAFSLKDSSAHTVFEISEG 394 (498)
Q Consensus 331 ~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~----------------~~~~~v~f~~~~~~~~~~~~l~~~ 394 (498)
+++.+ +.+..++++..++++.+.+.|++.+.+.-+..+ ...++++|.+++ ..++.+.
T Consensus 248 ~~~~l--~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-----~~~~~~~ 320 (389)
T 3acz_A 248 CARGM--KTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-----FEAAKKL 320 (389)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----HHHHHHH
T ss_pred HHcCc--cHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-----HHHHHHH
Confidence 44443 234566777778888888888887654322111 125789998842 4567777
Q ss_pred HHhcCcEeeee---------cCCCCC--------------CCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 395 LRKFGWIVPAY---------TMPANA--------------ENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 395 L~~~G~~v~~~---------~~~~~~--------------~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
|.+.|+.++.. ..+... ....++|++++.. +++.++++|.++++
T Consensus 321 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~ 387 (389)
T 3acz_A 321 MEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE 387 (389)
T ss_dssp HTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred HHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 88888766542 111110 1146899999753 66666777777664
No 188
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.87 E-value=2.1e-21 Score=197.91 Aligned_cols=325 Identities=12% Similarity=0.045 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHhcc-CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceee--ecChhHHHHHHHHHHHHHHHHHH
Q 010897 69 EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--TVGSSEAIMLAGLAFKRKWQQKR 145 (498)
Q Consensus 69 ~~~~~~~l~~~~~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~g~sea~~la~~a~~~~~~~~~ 145 (498)
.+.+.+++...... ....|....+..++++.+.+++...+|.+.+. ..+++ |+|+++|+.+++.++....
T Consensus 48 ~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~v~t~G~~~al~~~~~~l~~~~---- 120 (401)
T 7aat_A 48 LNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKS---GRYVTVQGISGTGSLRVGANFLQRFF---- 120 (401)
T ss_dssp CHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEEEHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCcccccc---CceEEEecCcchHHHHHHHHHHHHhc----
Confidence 35677877776653 23334444567788888777776655543211 12655 9999999998887765210
Q ss_pred HhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec-CCccccCHHHHHHHhh---hCCeEEEEeeccCCcccc---
Q 010897 146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEF--- 218 (498)
Q Consensus 146 ~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~L~~~i~---~~t~~v~~~~~~t~tG~~--- 218 (498)
..+++|++++++|..+...++..|++++.+|++ ++++.+|++.+++.+. +++++|++++++||||.+
T Consensus 121 ------~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~ 194 (401)
T 7aat_A 121 ------KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQ 194 (401)
T ss_dssp ------TTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCH
T ss_pred ------cCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCH
Confidence 014689999999999999999999999999985 3358899998777775 468899999999999976
Q ss_pred cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCC---CCccc--cCCCCeeEEEEcCCccCC-CCCCeEEEEEeC
Q 010897 219 EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP---DLEWD--FRLPLVKSINVSGHKYGL-VYAGVGWVVWRT 292 (498)
Q Consensus 219 ~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~---~~~~~--~~~~~~dsi~~s~hK~l~-~p~g~g~~~~~~ 292 (498)
+++++|.++|+++ |+++++|++|+++.. ... ..... .....-..+..+.+|.++ .+.++||++...
T Consensus 195 ~~l~~i~~~~~~~------~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~ 266 (401)
T 7aat_A 195 EQWKELASVVKKR------NLLAYFDMAYQGFAS--GDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVIC 266 (401)
T ss_dssp HHHHHHHHHHHHT------TCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred HHHHHHHHHHHhC------CcEEEEccccccccC--CCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEe
Confidence 5578899999999 999999999988752 110 00000 112234566778999874 666799998632
Q ss_pred CC-CCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc--------HHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 010897 293 KD-DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEGYKNIMENCMGNARALREGLEKTG- 362 (498)
Q Consensus 293 ~~-~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~- 362 (498)
.. .....+... +.......+ .+. ..+.+.++...+. .+.+++..++..++++++.+.|++++
T Consensus 267 ~~~~~~~~~~~~---~~~~~~~~~--~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 338 (401)
T 7aat_A 267 RDAEEAKRVESQ---LKILIRPMY--SNP---PMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGS 338 (401)
T ss_dssp SSHHHHHHHHHH---HHHHHHHHH--SSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHH---HHHHHHhcc--CCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11 100000000 000000000 111 1223333332221 23356667788889999999999874
Q ss_pred --CeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 363 --RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 363 --~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
++++..+ ..+++.|. +.+...+...|.++|+.+.. . +|+++.. ++.++++++++.|+++
T Consensus 339 ~~~~~~~~~--~~~~~~~~-----~~~~~~~~~ll~~~gi~v~~----~-------~Ris~~~-~~~~~i~~~~~~l~~~ 399 (401)
T 7aat_A 339 SHNWQHITD--QIGMFCFT-----GLKPEQVERLTKEFSIYMTK----D-------GRISVAG-VASSNVGYLAHAIHQV 399 (401)
T ss_dssp CSCCHHHHH--CCSSEEEC-----CCCHHHHHHHHHHHCEECCT----T-------CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred CCCCceecC--CcceEEec-----CCCHHHHHHHHHhCCEeccC----C-------CeEEecc-CChhhHHHHHHHHHHH
Confidence 3444333 34455542 13454554445778987531 1 6999965 4556699999998877
Q ss_pred H
Q 010897 441 L 441 (498)
Q Consensus 441 l 441 (498)
+
T Consensus 400 ~ 400 (401)
T 7aat_A 400 T 400 (401)
T ss_dssp H
T ss_pred h
Confidence 5
No 189
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.87 E-value=6.4e-20 Score=188.82 Aligned_cols=331 Identities=10% Similarity=-0.013 Sum_probs=205.5
Q ss_pred ChHHHHHHHHHHhccCCCC-CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHH
Q 010897 68 MEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~ 146 (498)
.+|.+.+++.+.+...... ...++ .....++.+.++++++.+. ..+++|+||++|+.+++.+++.. ...
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~-----~~v~~~~ggtea~~~ai~~~~~~-~~~-- 129 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFGGIT--HAPAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQY-WQA-- 129 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCSSEE--CHHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHH-HHH--
T ss_pred CCHHHHHHHHHHHHhcccccccccC--CHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHHH-hcc--
Confidence 4688889998888654321 11233 2334566777999998654 24999999999999999876431 110
Q ss_pred hcCCCCCCcEEEEcCCchh-HHHHHHHHcC-------------CeeEEEEecC----Ccc-ccCHHHHHHHhhh---CCe
Q 010897 147 EQGKPYDKPNIVTGANVQV-CWEKFARYFE-------------VELKEVKLEE----GYY-VMNPVKAVELVDE---NTI 204 (498)
Q Consensus 147 ~~g~~~~~~~Iv~s~~~h~-~~~~~~~~~g-------------~~~~~v~~~~----~~~-~~d~~~L~~~i~~---~t~ 204 (498)
.|.+ +++|++++++|. +...++...| .+++.++++. +.+ .+|+++|++++++ +++
T Consensus 130 -~g~~--~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 206 (429)
T 1s0a_A 130 -KGEA--RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIA 206 (429)
T ss_dssp -HTCC--CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEE
T ss_pred -cCCC--CCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEE
Confidence 1111 357888776544 3333333222 1456666542 123 5899999999973 455
Q ss_pred EEEEeec-cCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCcc
Q 010897 205 CVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKY 278 (498)
Q Consensus 205 ~v~~~~~-~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~ 278 (498)
+|+++.. +|+||.+.| +++|.++|+++ |+++|+|++|+++.. .......+ ++. ..|.++++ |.
T Consensus 207 ~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~g~--~g~~~~~~~~~~-~~d~~t~s--K~ 275 (429)
T 1s0a_A 207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE------GILLIADEIATGFGR--TGKLFACEHAEI-APDILCLG--KA 275 (429)
T ss_dssp EEEECSSEECTTTCEEBCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEEEEC--GG
T ss_pred EEEEeecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCCcc--cchHHHhhhcCC-CCCEEEec--cc
Confidence 5554444 588998777 99999999999 999999999987531 11111111 121 35666554 76
Q ss_pred CCCC-CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010897 279 GLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREG 357 (498)
Q Consensus 279 l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~ 357 (498)
+.++ .++|+++.++ +.+ +.+. ...........+ ++.+.....+..++++.+..+ +..++..+++++|.+.
T Consensus 276 l~~G~~~iG~~~~~~-~~~-~~l~--~~~~~~~~~~~t--~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~ 346 (429)
T 1s0a_A 276 LTGGTMTLSATLTTR-EVA-ETIS--NGEAGCFMHGPT--FMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQ 346 (429)
T ss_dssp GGTSSSCCEEEEECH-HHH-HHHH--TSTTSSCSCCCT--TTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred ccCCCccceEEEeCH-HHH-HHhh--cCCCcccccCCC--CCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 6666 8899998754 221 2111 100000000111 222334444555556544333 3556777788999999
Q ss_pred HhcC---CCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHH
Q 010897 358 LEKT---GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 358 L~~~---~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
|+++ +++..+.. ..+++.+.++. ..+..++.+.|.++|+.+... ..++|++++...|++++++++
T Consensus 347 L~~l~~~~~~~~~~~--~g~~~~~~~~~--~~~~~~l~~~l~~~Gi~v~~~--------~~~iRis~~~~~t~e~i~~~~ 414 (429)
T 1s0a_A 347 LAPARDAEMVADVRV--LGAIGVVETTH--PVNMAALQKFFVEQGVWIRPF--------GKLIYLMPPYIILPQQLQRLT 414 (429)
T ss_dssp HGGGGGCTTEEEEEE--ETTEEEEEESS--CBCHHHHHHHHHHTTEECCCB--------TTEEEECCCTTCCHHHHHHHH
T ss_pred HHHHhcCCCEEEEEE--eeEEEEEEECC--cccHHHHHHHHHHCCCEEecc--------CCEEEEECCCCCCHHHHHHHH
Confidence 9875 44543332 34677888753 356778999999999876431 257999987778999999999
Q ss_pred HHHHHHHHH
Q 010897 435 SHIEEVLKE 443 (498)
Q Consensus 435 ~~l~~~l~~ 443 (498)
+.|+++++.
T Consensus 415 ~~l~~~~~~ 423 (429)
T 1s0a_A 415 AAVNRAVQD 423 (429)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHHHHh
Confidence 999887654
No 190
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.86 E-value=2.1e-20 Score=191.99 Aligned_cols=296 Identities=16% Similarity=0.072 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHH----H
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----R 172 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~----~ 172 (498)
..++++.+++++|.+. .+++++|++|+.+++.++..+ +++|+++.+.|.+....+ +
T Consensus 60 ~~~l~~~la~~~g~~~-------~v~~~sGt~A~~~~l~~~~~~-------------gd~vi~~~~~~~~~~~~~~~~~~ 119 (421)
T 2ctz_A 60 VDVLEKRLAALEGGKA-------ALATASGHAAQFLALTTLAQA-------------GDNIVSTPNLYGGTFNQFKVTLK 119 (421)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCCT-------------TCEEEECSCCCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhCCCc-------eEEecCHHHHHHHHHHHHhCC-------------CCEEEEeCCCchHHHHHHHHHHH
Confidence 3456667899998763 566667799999888876321 478999999999877664 7
Q ss_pred HcCCeeEEE-EecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCc-ccc
Q 010897 173 YFEVELKEV-KLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS-GGF 250 (498)
Q Consensus 173 ~~g~~~~~v-~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~-~g~ 250 (498)
..|++++.+ +.+ |+++|+++|+++|++|++++++|++|.+.|+++|.++|+++ |+++|+|++| +.+
T Consensus 120 ~~g~~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~------g~~livD~~~~~~g 187 (421)
T 2ctz_A 120 RLGIEVRFTSREE------RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK------GVALIVDNTFGMGG 187 (421)
T ss_dssp HTTCEEEECCTTC------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGGGG
T ss_pred HcCCEEEEECCCC------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCccccc
Confidence 789988888 542 79999999999999999999999999999999999999999 9999999999 644
Q ss_pred cccccCCCCccccCCCCeeEEEEcCCccCCCCC-CeEEEEEeC--CCCC---Ccccc-cccCccCCCCC-C---------
Q 010897 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRT--KDDL---PDELV-FHINYLGSDQP-T--------- 313 (498)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~-g~g~~~~~~--~~~l---~~~~~-~~~~yl~~~~~-~--------- 313 (498)
. ..... . .++|++..|+||++++|. ++|++++.+ .+.. ...+. ....|.+.... .
T Consensus 188 ~---~~~~~--~---~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~ 259 (421)
T 2ctz_A 188 Y---LLRPL--A---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVK 259 (421)
T ss_dssp T---SCCGG--G---GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHH
T ss_pred c---cCCcc--c---cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHH
Confidence 2 11111 1 247999999999998765 478787763 2220 01110 01111111000 0
Q ss_pred -----ccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEee-C----------------CC
Q 010897 314 -----FTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILS-K----------------DV 371 (498)
Q Consensus 314 -----~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~----------------~~ 371 (498)
...-+.. ...+..|+++. +.+.+..++++..++++++.+.|+++++++.+. + ..
T Consensus 260 ~r~~~~~~~g~~--~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~ 335 (421)
T 2ctz_A 260 ARVDGLRDQGQA--LGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGK 335 (421)
T ss_dssp HHHTHHHHHCCC--CCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTC
T ss_pred HHHHHHHhcCCC--CCHHHHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCC
Confidence 0000111 11222333332 233455667778899999999999999888763 1 12
Q ss_pred CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeee------cCC---CC-----------CCCeeEEEEeecCCCCHHHHH
Q 010897 372 GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAY------TMP---AN-----------AENVAVLRVVVREDFSRSLVE 431 (498)
Q Consensus 372 ~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~------~~~---~~-----------~~~~~~lRv~v~~~~t~~~~~ 431 (498)
..++++|.+++. ..+...+.+.|...++.++.. ..| .+ ....+.+|+|++. ++++
T Consensus 336 ~g~ivsf~l~~~-~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~ 410 (421)
T 2ctz_A 336 PGAVLTFGLKGG-YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVE 410 (421)
T ss_dssp CCSEEEEEETTH-HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHH
T ss_pred CceEEEEEeCCC-HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHH
Confidence 467999999541 112334555554434322211 011 00 0113689999864 6888
Q ss_pred HHHHHHHHHH
Q 010897 432 RLISHIEEVL 441 (498)
Q Consensus 432 ~l~~~l~~~l 441 (498)
.++++|++++
T Consensus 411 ~li~~l~~al 420 (421)
T 2ctz_A 411 DLKAELKEAL 420 (421)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888888765
No 191
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.86 E-value=1e-19 Score=187.98 Aligned_cols=324 Identities=14% Similarity=0.016 Sum_probs=205.7
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+.........++ .+...++.+++++++|.+ .+.+++||++|+..++.+++..... .
T Consensus 93 ~~p~v~~Ai~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~g~~-------~v~~~~sGseA~~~al~~~~~~~~~---~ 160 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLTLTSRAFY--NNVLGEYEEYITKLFNYH-------KVLPMNTGVEAGETACKLARKWGYT---V 160 (439)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSE--ESSHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred CCHHHHHHHHHHHHhcCcccCccC--CHHHHHHHHHHHHhcCCC-------EEEEeCCHHHHHHHHHHHHHHHhhh---c
Confidence 678899999988876432211122 233445666788888753 2999999999999999887642110 1
Q ss_pred cCCCCCCcEEEEcCC-chhHHHHHHHHcC------------CeeEEEEecCCccccCHHHHHHHhh-hCCeEEEEeeccC
Q 010897 148 QGKPYDKPNIVTGAN-VQVCWEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGST 213 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~-~h~~~~~~~~~~g------------~~~~~v~~~~~~~~~d~~~L~~~i~-~~t~~v~~~~~~t 213 (498)
.|.+.++++|++.++ .|.++..++...| .++..+|. .|+++|+++++ +++++|++...++
T Consensus 161 ~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~~vi~ep~~~ 234 (439)
T 2oat_A 161 KGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY------NDLPALERALQDPNVAAFMVEPIQG 234 (439)
T ss_dssp TCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS------SCHHHHHHHTTSTTEEEEEECSSBT
T ss_pred cCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC------CCHHHHHHHhCCCCEEEEEEECCCC
Confidence 122112356777665 4555555555545 34555553 38999999994 5666666655556
Q ss_pred Cccccc----CHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCccCCCC-CCeEE
Q 010897 214 LTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVY-AGVGW 287 (498)
Q Consensus 214 ~tG~~~----~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~l~~p-~g~g~ 287 (498)
++|.+. ++++|.++|+++ |+++++|++|.|+.. .......+ ++. ..|.+ +..|.+.++ .++|+
T Consensus 235 ~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~g~--~g~~~~~~~~~~-~~Di~--t~sK~l~~G~~~~G~ 303 (439)
T 2oat_A 235 EAGVVVPDPGYLMGVRELCTRH------QVLFIADEIQTGLAR--TGRWLAVDYENV-RPDIV--LLGKALSGGLYPVSA 303 (439)
T ss_dssp TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEE--EECGGGGTTSSCCEE
T ss_pred CCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CCcchhHHHhCC-CCcEE--EecccccCCCCCeEE
Confidence 678765 799999999999 999999999977531 11111111 122 25665 445887765 67999
Q ss_pred EEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 010897 288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (498)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (498)
++.+++ .. +.+ .......+ ++-+.....+..++++.+..+ +..++..+++++|.+.|++++ +.++
T Consensus 304 v~~~~~-~~-~~l-------~~~~~~~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~-~~~~ 368 (439)
T 2oat_A 304 VLCDDD-IM-LTI-------KPGEHGST--YGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLP-SDVV 368 (439)
T ss_dssp EEECHH-HH-TTS-------CTTSSCCS--STTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSC-TTTE
T ss_pred EEECHH-HH-hcc-------CCCCcccC--CCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 987642 21 111 11011111 222234445555666655443 456778889999999998873 3221
Q ss_pred eC-CCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 368 SK-DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 368 ~~-~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.. +...+++.+.+++....+..++.++|.++|+.+.. .+..++|+++...+|+++++++++.|+++++
T Consensus 369 ~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~-------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 369 TAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKP-------THGDIIRFAPPLVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp EEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCB-------SSSSEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEec-------CCCCEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 11 11456778887542114577999999999987643 1346799998778899999999999998875
No 192
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.86 E-value=5e-21 Score=195.51 Aligned_cols=282 Identities=18% Similarity=0.105 Sum_probs=183.0
Q ss_pred HHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHH----HHHHc
Q 010897 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYF 174 (498)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~----~~~~~ 174 (498)
++++.+++++|.+. .+++++|++|+.+++. +.++ +++|+++.+.|.+... .++..
T Consensus 71 ~l~~~la~~~g~~~-------~i~~~sG~~ai~~~~~-l~~~-------------gd~Vl~~~~~y~~~~~~~~~~~~~~ 129 (403)
T 3cog_A 71 CLEKAVAALDGAKY-------CLAFASGLAATVTITH-LLKA-------------GDQIICMDDVYGGTNRYFRQVASEF 129 (403)
T ss_dssp HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHT-TSCT-------------TCEEEEESSCCHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHhCCCc-------EEEECCHHHHHHHHHH-HhCC-------------CCEEEEeCCCcchHHHHHHHHHHHc
Confidence 44555888888762 5555566789888776 4221 4689999999987443 34568
Q ss_pred CCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCC-ceEEEecCccccccc
Q 010897 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD-TPIHVDAASGGFIAP 253 (498)
Q Consensus 175 g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~-~~l~vD~A~~g~~~~ 253 (498)
|++++.++++ |+++|+++++++|++|++++++||||.+.|+++|.++|+++ | +++++|++|+.+..
T Consensus 130 G~~v~~v~~~------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~~livD~~~~~~~~- 196 (403)
T 3cog_A 130 GLKISFVDCS------KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKH------GDIILVVDNTFMSPYF- 196 (403)
T ss_dssp TCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSS------SCCEEEEECTTTCTTT-
T ss_pred CCEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHc------CCCEEEEECCCccccc-
Confidence 9999888863 79999999999999999999999999999999999999999 8 99999999988642
Q ss_pred ccCCCCccccCCCCeeEEEEcCCccCCCCCC--eEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHH
Q 010897 254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQ 331 (498)
Q Consensus 254 ~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g--~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~ 331 (498)
..+ + + .++|++..|.||++++|.+ +|+++.++++.. +.+.......+ ++. ..+.+|++
T Consensus 197 -~~~-~--~---~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~-~~l~~~~~~~g---------~~~---~~~~~~~~ 256 (403)
T 3cog_A 197 -QRP-L--A---LGADISMYSATKYMNGHSDVVMGLVSVNCESLH-NRLRFLQNSLG---------AVP---SPIDCYLC 256 (403)
T ss_dssp -CCT-T--T---TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHH-HHHHHHHHHHC---------CCC---CHHHHHHH
T ss_pred -CCc-c--c---cCCeEEEEcChhhccCCCCCeEEEEEECcHHHH-HHHHHHHHhcC---------CCC---CHHHHHHH
Confidence 111 1 1 2589999999999988776 498887654321 11111000011 111 12345554
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------eEEeeCC--CCccEEEEEecCCCCCCHHHHHHHH
Q 010897 332 FIRLGFEGYKNIMENCMGNARALREGLEKTGR--------------FEILSKD--VGVPLVAFSLKDSSAHTVFEISEGL 395 (498)
Q Consensus 332 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~--------------~~~~~~~--~~~~~v~f~~~~~~~~~~~~l~~~L 395 (498)
++.+. .+..++++..+++..+.+.|++.+. +++..+. ...++++|.+++ ....+.+.|
T Consensus 257 ~~~l~--~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~----~~~~~~~~l 330 (403)
T 3cog_A 257 NRGLK--TLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG----TLQHAEIFL 330 (403)
T ss_dssp HHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS----CHHHHHHHH
T ss_pred Hhhhh--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC----CHHHHHHHH
Confidence 44432 2345566666677777777766543 2222110 136789998853 224566777
Q ss_pred HhcCcEeeeec---------CCCC--------------CCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 396 RKFGWIVPAYT---------MPAN--------------AENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 396 ~~~G~~v~~~~---------~~~~--------------~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.+.|+++.+.. .|.. .....++|++++...+ +.++++|.++++.+
T Consensus 331 ~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~----~d~i~~l~~al~~~ 398 (403)
T 3cog_A 331 KNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDE----EDLLEDLDQALKAA 398 (403)
T ss_dssp HHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCH----HHHHHHHHHHHHHH
T ss_pred HhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCH----HHHHHHHHHHHHHh
Confidence 77787654320 1110 1124689999986444 44455565555543
No 193
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.86 E-value=4.8e-20 Score=190.30 Aligned_cols=329 Identities=9% Similarity=-0.050 Sum_probs=201.7
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+..... +....+......++.++++++++...+ ..+++|+||++|+..++.+++...
T Consensus 60 ~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~ggsea~~~al~~~~~~~------ 128 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAG-ATILSASNAPAVTLAERLLASFPGEGT----HKIWFGHSGSDANEAAYRAIVKAT------ 128 (439)
T ss_dssp SCHHHHHHHHHHHHSCSC-SCSSSSEEHHHHHHHHHHHHTTTCTTT----EEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCCCCC----CEEEEeCCHHHHHHHHHHHHHHHh------
Confidence 568888888888776422 222334456777888999999854321 139999999999999998865421
Q ss_pred cCCCCCCcEEEE-cCCchhHHHHHHHHcCCee--------------EEEEecCCcccc-----CHHHHHHHh----hhCC
Q 010897 148 QGKPYDKPNIVT-GANVQVCWEKFARYFEVEL--------------KEVKLEEGYYVM-----NPVKAVELV----DENT 203 (498)
Q Consensus 148 ~g~~~~~~~Iv~-s~~~h~~~~~~~~~~g~~~--------------~~v~~~~~~~~~-----d~~~L~~~i----~~~t 203 (498)
+++.|++ ....|..+..++...|... ..+|.+.+ +.. |+++|++++ .+++
T Consensus 129 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~ 202 (439)
T 3dxv_A 129 -----GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAAVPAGSI 202 (439)
T ss_dssp -----SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHTSCTTCE
T ss_pred -----CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHhcCCCCE
Confidence 1245555 4445555555544433221 22333221 222 799999999 4567
Q ss_pred eEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcccc-CCCCeeEEEEcCCcc
Q 010897 204 ICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKY 278 (498)
Q Consensus 204 ~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~-~~~~~dsi~~s~hK~ 278 (498)
++|++..+++++|.+.| +++|.++|++| |+++++|++|+++.. .......+. +. ..|.++ ..|.
T Consensus 203 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~g~g~--~g~~~~~~~~~~-~~di~s--~sK~ 271 (439)
T 3dxv_A 203 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAH------GILVVCDEVKVGLAR--SGRLHCFEHEGF-VPDILV--LGKG 271 (439)
T ss_dssp EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTCTTT--TSSSSGGGGTTC-CCSEEE--ECGG
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CchhhHHHhcCC-CCCEEE--Ecch
Confidence 77888888888899988 99999999999 999999999987531 111111111 11 245554 4587
Q ss_pred CCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 010897 279 GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL 358 (498)
Q Consensus 279 l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L 358 (498)
+.++.++|+++.+.. .. +. +.......+ + .+.....+..+++..+.. .+..++..++++++.+.|
T Consensus 272 ~~~G~riG~~~~~~~-~~-~~-------~~~~~~~~t--~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l 336 (439)
T 3dxv_A 272 LGGGLPLSAVIAPAE-IL-DC-------ASAFAMQTL--H-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGL 336 (439)
T ss_dssp GGTTSCCEEEEEEHH-HH-TS-------CSSSSCCTT--T-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred hcCCcceEEEEECHH-HH-hh-------hcCCCcCCC--c-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 777778899987642 11 11 111011111 1 122333333444443333 334455555666666555
Q ss_pred hc----CCCeEEeeCCCCccEEEEEecC------CCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHH
Q 010897 359 EK----TGRFEILSKDVGVPLVAFSLKD------SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRS 428 (498)
Q Consensus 359 ~~----~~~~~~~~~~~~~~~v~f~~~~------~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~ 428 (498)
++ .+.+..+.. ..+++.+.+.. +...+..++.+.|.++|+.+.... ....++|+++....+++
T Consensus 337 ~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~~~~~~t~e 409 (439)
T 3dxv_A 337 SELAKRHPLIGDIRG--RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVG-----MNGNVLEFTPPLTITET 409 (439)
T ss_dssp HHHHHHCTTEEEEEE--ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEES-----TTSCEEEECCCTTCCHH
T ss_pred HHHHHhCCCeEEEEE--EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecC-----CCCCEEEEECCCCCCHH
Confidence 54 454444333 45677776621 112335689999999998875431 22467999988888999
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 010897 429 LVERLISHIEEVLKEIES 446 (498)
Q Consensus 429 ~~~~l~~~l~~~l~~l~~ 446 (498)
+++++++.|+++++++.+
T Consensus 410 ~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 410 DIHKALDLLDRAFSELSA 427 (439)
T ss_dssp HHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999887654
No 194
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.2e-19 Score=186.22 Aligned_cols=313 Identities=12% Similarity=-0.037 Sum_probs=199.2
Q ss_pred hHHHHHHHHHHhccCCC-CCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 69 EPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
+|.+.+++.+.+..... ....++ .....++.+.+++++|.+.. ..+++|+||+||+.+++.+++..
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~~----~~v~~~~gg~ea~~~ai~~~~~~------- 127 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAHAAANDFY--NIPQLELAKKLVTYSPGNFQ----KKVFFSNSGTEAIEASIKVVKNT------- 127 (419)
T ss_dssp CHHHHHHHHHHHTTSCCCSCSCSC--CHHHHHHHHHHHHHSSCSSC----EEEEEESSHHHHHHHHHHHHHTT-------
T ss_pred CHHHHHHHHHHHhhCccccccccC--CHHHHHHHHHHHHhCCCCcC----CEEEEeCchHHHHHHHHHHHHHh-------
Confidence 68899999988876432 111233 34455677889999987621 24999999999999999876431
Q ss_pred cCCCCCCcEEEEcCCch-hHHHHHHHHcC-------------CeeEEEEecCCccc----------------cCHHHHH-
Q 010897 148 QGKPYDKPNIVTGANVQ-VCWEKFARYFE-------------VELKEVKLEEGYYV----------------MNPVKAV- 196 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h-~~~~~~~~~~g-------------~~~~~v~~~~~~~~----------------~d~~~L~- 196 (498)
. +++|++.++++ ..+..++...| .+++.+|.+++ ++ +|+++|+
T Consensus 128 ---~--~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~g~~~~~~~~~~~~~~~~~l~~ 201 (419)
T 2eo5_A 128 ---G--RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNP-YRNPWHINGYENPSELVNRVIEFIED 201 (419)
T ss_dssp ---S--CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCS-SSCTTCCCTTTCHHHHHHHHHHHHHH
T ss_pred ---h--CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcc-ccccccccccccchhhHHHHHHHHHH
Confidence 0 35788777644 44444443322 35778887542 33 4788999
Q ss_pred HHhhh-----CCeEEEEeecc-CCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCC
Q 010897 197 ELVDE-----NTICVAAILGS-TLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRL 265 (498)
Q Consensus 197 ~~i~~-----~t~~v~~~~~~-t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~ 265 (498)
+++++ ++++|+ +.|+ ++||.+.+ +++|.++|+++ |+++|+|++|+++.. .......+ ++.
T Consensus 202 ~~i~~~~~~~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~~~g~--~g~~~~~~~~~~ 272 (419)
T 2eo5_A 202 YIFVNLVPPEEVAGIF-FEPIQGEGGYVIPPKNFFAELQKLAKKY------GILLVDDEVQMGLGR--TGKLFAIENFNT 272 (419)
T ss_dssp THHHHTCCGGGEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTC
T ss_pred HHHhhccCCCCEEEEE-EeCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CcchhhHHhcCC
Confidence 88873 445554 5555 56798766 99999999999 999999999987631 11111111 111
Q ss_pred CCeeEEEEcCCccCCCC-CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHH
Q 010897 266 PLVKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIM 344 (498)
Q Consensus 266 ~~~dsi~~s~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~ 344 (498)
..|.++++ |.+.++ .++|+++.++. .. .+ . . ....+ ++-+.....+..++++.+ .+..
T Consensus 273 -~~d~~t~s--K~~~~G~~riG~~~~~~~-~~--~~--~-----~-~~~~t--~~~n~~~~~aa~aal~~~-----~~~~ 331 (419)
T 2eo5_A 273 -VPDVITLA--KALGGGIMPIGATIFRKD-LD--FK--P-----G-MHSNT--FGGNALACAIGSKVIDIV-----KDLL 331 (419)
T ss_dssp -CCSEEEEC--GGGGTTTSCCEEEEEEGG-GC--CC--------------C--CCCCHHHHHHHHHHHHHH-----HHHH
T ss_pred -CCCEEEec--ccccCCccceEEEEEchH-hh--cC--C-----c-ccCCC--CCCCHHHHHHHHHHHHHH-----HHHH
Confidence 24666543 666566 89999997653 21 11 1 0 00111 222223333444444332 2267
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCC
Q 010897 345 ENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVRED 424 (498)
Q Consensus 345 ~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~ 424 (498)
++..+++++|.+.|+++ +..+.. ..+++.+.+.+. ..+.. +.+.|.++|+.+.... ..++|+++...
T Consensus 332 ~~~~~~~~~l~~~L~~~--~~~~~~--~g~~~~i~~~~~-~~~~~-~~~~l~~~Gv~v~~~~-------~~~lRis~~~~ 398 (419)
T 2eo5_A 332 PHVNEIGKIFAEELQGL--ADDVRG--IGLAWGLEYNEK-KVRDR-IIGESFKRGLLLLPAG-------RSAIRVIPPLV 398 (419)
T ss_dssp HHHHHHHHHHHHHHTTS--SSEEEE--ETTEEEEECSCH-HHHHH-HHHHHHHTTEECEEET-------TTEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHh--hhheEe--eeEEEEEEEecC-ccHHH-HHHHHHHCCCEEecCC-------CCEEEEECCCC
Confidence 78888999999999886 222222 457777777321 11245 8899999998875431 35799998777
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 010897 425 FSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 425 ~t~~~~~~l~~~l~~~l~~ 443 (498)
.|+++++++++.|+++++.
T Consensus 399 ~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 399 ISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999999988765
No 195
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.86 E-value=1.3e-20 Score=195.11 Aligned_cols=342 Identities=13% Similarity=0.091 Sum_probs=207.6
Q ss_pred ccCCCC-Cccccccc-C-----CChHHHHHHHHHHh--c-cCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCccee
Q 010897 52 LDGNPR-LNLASFVT-T-----WMEPECDKLVMASI--N-KNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGV 121 (498)
Q Consensus 52 ~~~~p~-~~~~~~~~-~-----~~~~~~~~~l~~~~--~-~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~ 121 (498)
.+++|. ++|+.+.+ . +..+.+.+++.... + .....|....+..++++++.+++ +|.+...-....++
T Consensus 45 ~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~i~ 121 (448)
T 3meb_A 45 ADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKDSKAAQEGRIA 121 (448)
T ss_dssp HCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTTCHHHHTTCEE
T ss_pred hCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCCccccCcCcEE
Confidence 355664 56655544 2 23466777765554 1 22233444456666666655554 36652100001377
Q ss_pred e--ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHH----HcCCeeEEEEe-cCC-ccccCHH
Q 010897 122 G--TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR----YFEVELKEVKL-EEG-YYVMNPV 193 (498)
Q Consensus 122 ~--t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~----~~g~~~~~v~~-~~~-~~~~d~~ 193 (498)
+ |+|+++|+.+++.....- . .+++|++++++|..+...++ ..|++++.+|+ +++ ++.+|++
T Consensus 122 ~~~t~ggt~al~l~~~~~~~~-~----------~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e 190 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHLW-M----------PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFS 190 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHHH-C----------TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHH
T ss_pred EEECCcHHHHHHHHHHHHHHh-C----------CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHH
Confidence 7 999999998754322111 0 14689999999999999999 99999999998 554 5899999
Q ss_pred HHHHHhhh---CCeEEEEeeccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCccccccccc-CCCCccc-c-C
Q 010897 194 KAVELVDE---NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWD-F-R 264 (498)
Q Consensus 194 ~L~~~i~~---~t~~v~~~~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~-~~~~~~~-~-~ 264 (498)
+|++++++ +++++++++++||||.+.+ +++|+++|+++ |+++++|++|+++...-. .+..... + .
T Consensus 191 ~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~------~~~li~Deay~~~~~~~~~~~~~~~~~~~~ 264 (448)
T 3meb_A 191 NTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK------KHIAFFDSAYQGFATGSFEADAFAVRMFVD 264 (448)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTSSSCHHHHTHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCCcccCchhHHHHhh
Confidence 99999984 5788888999999999866 55599999999 999999999988752100 0000000 1 1
Q ss_pred CCCeeEEEEcCCccCC-CCCCeEEE--EE--------eCCCCCCcccccccC-ccCCCCCCccccCCCchHHHHHHHHHH
Q 010897 265 LPLVKSINVSGHKYGL-VYAGVGWV--VW--------RTKDDLPDELVFHIN-YLGSDQPTFTLNFSKGSSQIIAQYYQF 332 (498)
Q Consensus 265 ~~~~dsi~~s~hK~l~-~p~g~g~~--~~--------~~~~~l~~~~~~~~~-yl~~~~~~~~l~~sr~~~~~~a~~~~l 332 (498)
...-..+..|.+|.++ .+.++|++ +. .+++.. ..+..... ..... .+. ...++++++.
T Consensus 265 ~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~-------~~~--~~~~~~~a~~ 334 (448)
T 3meb_A 265 AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALS-AAMVSGMTLQIRKT-------WSM--SAIHGAYIVQ 334 (448)
T ss_dssp TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHH-HHHHHHHHHHHHTT-------TSS--CCHHHHHHHH
T ss_pred cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHH-HHHHHHHHHHHhcc-------cCC--ccHHHHHHHH
Confidence 1223455778899775 56778998 44 222100 00000000 00000 111 1223344444
Q ss_pred HHhcH--------HHHHHHHHHHHHHHHHHHHHHhcC--CC------eEEeeCCCCccEEEEEecCCCCCCHHHHHHHH-
Q 010897 333 IRLGF--------EGYKNIMENCMGNARALREGLEKT--GR------FEILSKDVGVPLVAFSLKDSSAHTVFEISEGL- 395 (498)
Q Consensus 333 ~~lg~--------~g~~~~~~~~~~~a~~l~~~L~~~--~~------~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L- 395 (498)
..+.. +.+++..++..+++++|.+.|+++ ++ +....+ ..++++|. +++. +++.+|
T Consensus 335 ~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~--~~g~~~~~-----~~~~-~~~~~ll 406 (448)
T 3meb_A 335 VIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT--AIGMFTFT-----GLTP-EHVDYLK 406 (448)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH--CCSSEEEC-----CCCH-HHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC--CceEEEec-----CCCH-HHHHHHH
Confidence 44332 335677778888999999999987 33 333322 23444441 1233 455555
Q ss_pred HhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 396 RKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 396 ~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.++|+.+... . .|+++.. .+.++++++++.|+++++
T Consensus 407 ~~~gV~v~~G----~------gRis~a~-~~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 407 EKWSIYLVKA----G------GRMSMCG-LTESNCDYVAEAIHDAVT 442 (448)
T ss_dssp HHHCEEECSG----G------GEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred HhCCEEEeCC----C------cEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 6779876331 1 2999853 466779999999998886
No 196
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.85 E-value=4.8e-21 Score=198.80 Aligned_cols=285 Identities=15% Similarity=0.112 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHH----H
Q 010897 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A 171 (498)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~----~ 171 (498)
..+++++++++++|.+. .+++++|++|+.+++. +.+ .+++|+++.+.|.++... +
T Consensus 134 ~~~~l~~~la~~~g~~~-------~i~~~sGt~al~~~l~-~~~-------------~Gd~Vi~~~~~y~~~~~~~~~~~ 192 (464)
T 1ibj_A 134 TRDALESLLAKLDKADR-------AFCFTSGMAALSAVTH-LIK-------------NGEEIVAGDDVYGGSDRLLSQVV 192 (464)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHT-TSC-------------TTCEEEEESSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEECCCchhHHHHHHHHH
Confidence 56788999999999752 7788888998876553 211 146899999999988754 5
Q ss_pred HHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCccccc
Q 010897 172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI 251 (498)
Q Consensus 172 ~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~ 251 (498)
+..|++++.++++ |+++|+++++++|++|++++++||||.+.|+++|.++|+++ |+++++|++|+.+.
T Consensus 193 ~~~G~~v~~v~~~------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~------gi~livDea~~~g~ 260 (464)
T 1ibj_A 193 PRSGVVVKRVNTT------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ------GALVLVDNSIMSPV 260 (464)
T ss_dssp GGGTCEEEEECTT------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTT------TCEEEEECTTTCTT
T ss_pred HHcCCEEEEeCCC------CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 6679998888753 79999999999999999999999999999999999999999 99999999997643
Q ss_pred ccccCCCCccccCCCCeeEEEEcCCccCCCCCCe--EEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHH
Q 010897 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY 329 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~--g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~ 329 (498)
. ..+ .+ .++|++..++||+++++.|+ |+++.++++.. +.+.....+.+. . ...+.++
T Consensus 261 ~--~~~---~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~-~~l~~~~~~~g~---------~---~~~~~~~ 319 (464)
T 1ibj_A 261 L--SRP---LE---LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA-KEVYFLQNSEGS---------G---LAPFDCW 319 (464)
T ss_dssp T--CCG---GG---TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHH-HHHHHHHHHTTC---------B---CCHHHHH
T ss_pred c--CCh---hh---cCCEEEEECCcccccCCCCCcEEEEEEChHHHH-HHHHHHHHhcCC---------C---CCHHHHH
Confidence 1 111 11 24799999999999888775 99887653221 111111111111 1 1223455
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHh--------------cCCCeEEeeCCC--CccEEEEEecCCCCCCHHHHHH
Q 010897 330 YQFIRLGFEGYKNIMENCMGNARALREGLE--------------KTGRFEILSKDV--GVPLVAFSLKDSSAHTVFEISE 393 (498)
Q Consensus 330 ~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~--------------~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~l~~ 393 (498)
+++..+.. +..++++..+++..+.+.|+ +++++++..+.. ..++++|.+++ ......+.+
T Consensus 320 a~~~al~~--~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~ 395 (464)
T 1ibj_A 320 LCLRGIKT--MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS--VALSKHLVE 395 (464)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC--HHHHHHHHH
T ss_pred HHHhchhh--HHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC--HHHHHHHHH
Confidence 55544432 22223333333333434443 334444443321 35789998832 111345778
Q ss_pred HHHhcCcEeeeec------CCC--------------CCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 394 GLRKFGWIVPAYT------MPA--------------NAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 394 ~L~~~G~~v~~~~------~~~--------------~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.|...|+.++... .|. .....+++|++++. +++++++++|+++++
T Consensus 396 ~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~ 460 (464)
T 1ibj_A 396 TTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFK 460 (464)
T ss_dssp HCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred hcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 8877776654321 110 01124679999974 899999999998875
No 197
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.85 E-value=1.6e-19 Score=187.92 Aligned_cols=341 Identities=12% Similarity=0.084 Sum_probs=201.7
Q ss_pred HHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcC
Q 010897 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG 149 (498)
Q Consensus 70 ~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g 149 (498)
+.+.+++.+++......|...+...++ ++++++++|.+. +++|+||++|+.+++.+++++.... .|
T Consensus 53 ~~v~~a~~~~l~~~~~~y~~~~~~~~l----~~~la~~~~~~~-------v~~t~~gt~A~~~al~~~~~~~~~~---~G 118 (467)
T 2oqx_A 53 GAVTQSMQAAMMRGDEAYSGSRSYYAL----AESVKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKKREQE---KG 118 (467)
T ss_dssp SCCCHHHHHHTTSCCCCSSSCHHHHHH----HHHHHHHHCCSE-------EEEEC--CCSHHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHHHHhccCcceeccCchhHHH----HHHHHHHhCcCc-------EEEcCCcHHHHHHHHHHHhcccccc---CC
Confidence 566677777775433334444444444 455888888743 9999999999999999886531111 13
Q ss_pred CCCCC-cEEEEcCCchh-HHHHHHHHcCCeeEEEE------ec---CCccccCHHHHHHHhhh----CCeEEEEeeccCC
Q 010897 150 KPYDK-PNIVTGANVQV-CWEKFARYFEVELKEVK------LE---EGYYVMNPVKAVELVDE----NTICVAAILGSTL 214 (498)
Q Consensus 150 ~~~~~-~~Iv~s~~~h~-~~~~~~~~~g~~~~~v~------~~---~~~~~~d~~~L~~~i~~----~t~~v~~~~~~t~ 214 (498)
.+ + ++|+++ ..|+ ++.......|..+.... .+ +.++.+|+++|+++|++ +|++|+++.++|+
T Consensus 119 ~~--~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~ 195 (467)
T 2oqx_A 119 LD--RSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS 195 (467)
T ss_dssp CC--TTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCG
T ss_pred CC--ccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccC
Confidence 11 1 457776 5664 44445555666654432 11 12367899999999984 7899999999999
Q ss_pred c-ccc---cCHHHHHHHHHHhhcccCCCceEEEecCccc-ccc-------cccCCCCccccC---CCCeeEEEEcCCccC
Q 010897 215 T-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG-FIA-------PFLYPDLEWDFR---LPLVKSINVSGHKYG 279 (498)
Q Consensus 215 t-G~~---~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g-~~~-------~~~~~~~~~~~~---~~~~dsi~~s~hK~l 279 (498)
+ |.+ +++++|.++|++| |++||+|+|++. ... .+..... ..+. ...+|+++++.||++
T Consensus 196 ~gG~~~~~~~l~~i~~la~~~------gi~li~D~a~~~e~~~~~~~~~~~~~g~~~-~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 2oqx_A 196 AGGQPVSLANLKAMYSIAKKY------DIPVVMDSARFAENAYFIKQREAEYKDWTI-EQITRETYKYADMLAMSAKKDA 268 (467)
T ss_dssp GGCBCCCHHHHHHHHHHHHHT------TCCEEEECTTHHHHHHHHHHHCGGGTTSCH-HHHHHHHGGGCSEEEEESSSTT
T ss_pred CCCccCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhhhhcccccccccCccH-HHHhhhhhccCCeEEEeccccc
Confidence 8 665 5688999999999 999999988754 210 0111000 0111 124677889999999
Q ss_pred CCCCCeEEEEEeCC---CCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 010897 280 LVYAGVGWVVWRTK---DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALRE 356 (498)
Q Consensus 280 ~~p~g~g~~~~~~~---~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~ 356 (498)
+.|.| |+++.+++ +.+ ..+.....+ +....++ +......+.++..++...-. .+.+++..++++++.+
T Consensus 269 g~~~G-g~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~ 339 (467)
T 2oqx_A 269 MVPMG-GLLCMKDDSFFDVY-TECRTLCVV-QEGFPTY---GGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVD 339 (467)
T ss_dssp CCSSC-EEEEECSGGGHHHH-HHHHHHHHH-TTSSCCC---CCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CCCCc-eEEEecChhHHHHH-HHHHHhhhc-cCCcccc---cchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHH
Confidence 77655 66665443 111 111000001 1111111 12222222222122211111 1345556678899999
Q ss_pred HHhcCCCeEEeeCCCCccEEEEEecCC-CCCC-----HHHHHHHH-HhcCcEeeeecC------CC----CCCCeeEEEE
Q 010897 357 GLEKTGRFEILSKDVGVPLVAFSLKDS-SAHT-----VFEISEGL-RKFGWIVPAYTM------PA----NAENVAVLRV 419 (498)
Q Consensus 357 ~L~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~-----~~~l~~~L-~~~G~~v~~~~~------~~----~~~~~~~lRv 419 (498)
.|+++ ++++. +. ...++.+.+... .+.+ ..+++++| .++|+.+..... +. ......++|+
T Consensus 340 ~L~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl 416 (467)
T 2oqx_A 340 GLEEI-GVVCQ-QA-GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL 416 (467)
T ss_dssp HHHHT-TCCEE-EE-CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred HHHHC-CCeee-cC-CceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEE
Confidence 99888 47766 43 456677776310 0122 45678898 899988753210 10 0012368999
Q ss_pred eecCC-CCHHHHHHHHHHHHHHHHHHHc
Q 010897 420 VVRED-FSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 420 ~v~~~-~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
++... ++.++++++++.|+++++.+++
T Consensus 417 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 444 (467)
T 2oqx_A 417 TIPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred EecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 99877 8999999999999998876543
No 198
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.85 E-value=1.9e-20 Score=190.98 Aligned_cols=335 Identities=15% Similarity=0.072 Sum_probs=209.3
Q ss_pred Cccccccc------CCChHHHHHHHHHHh-cc-CCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHH
Q 010897 58 LNLASFVT------TWMEPECDKLVMASI-NK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129 (498)
Q Consensus 58 ~~~~~~~~------~~~~~~~~~~l~~~~-~~-n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea 129 (498)
+||+.+.+ .++++.+.+++. .+ +. ....|....+..++++.+.+|+.+..+.+.+. +...++.|+|+++|
T Consensus 32 I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-~~i~i~~t~G~~~a 109 (405)
T 3k7y_A 32 INLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIED-KKICTIQCIGGTGA 109 (405)
T ss_dssp EECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTT-TCEEEEEEEHHHHH
T ss_pred EEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccc-cceEEEEcCchHHH
Confidence 56665431 234566777765 43 22 34456666788899999888886554433211 11236899999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEe-cCCccccCHHHHHHHhhh--CCeEE
Q 010897 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE--NTICV 206 (498)
Q Consensus 130 ~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~L~~~i~~--~t~~v 206 (498)
+.+++.++.+- .. ++|++++++|..+..+++..|++++.+|+ +++++.+|+++|++++.+ ++++|
T Consensus 110 l~~~~~~l~~~-----------~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i 177 (405)
T 3k7y_A 110 IFVLLEFLKML-----------NV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSV 177 (405)
T ss_dssp HHHHHHHHHTT-----------TC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEE
T ss_pred HHHHHHHHHhc-----------CC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEE
Confidence 99888877541 02 68999999999999999999999999998 454589999999999975 45677
Q ss_pred EEeec-cCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCC-c-ccc-C-CCCeeEEEEcCCcc
Q 010897 207 AAILG-STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDF-R-LPLVKSINVSGHKY 278 (498)
Q Consensus 207 ~~~~~-~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~-~~~-~-~~~~dsi~~s~hK~ 278 (498)
+++.+ +||||...+ +++|.++|+++ ++++++|++|.++...-...+. . ..+ . .+++ .+..|..|.
T Consensus 178 ~l~~~~~NPTG~~~s~~~~~~l~~~~~~~------~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~S~SK~ 250 (405)
T 3k7y_A 178 ILQISCYNPCSVNIEEKYFDEIIEIVLHK------KHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAF-SVCQSFSKN 250 (405)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCE-EEEEECTTT
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CeEEEEecCcccccCCCcccchHHHHHHHhcCCcE-EEEeeCCcc
Confidence 77665 899999954 66788899999 9999999999987521000000 0 011 1 1233 444567776
Q ss_pred C-CCCCCeEEEEEe--CCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcH--------HHHHHHHHHH
Q 010897 279 G-LVYAGVGWVVWR--TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF--------EGYKNIMENC 347 (498)
Q Consensus 279 l-~~p~g~g~~~~~--~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~--------~g~~~~~~~~ 347 (498)
+ +++.++||++.- +++.+ ..+......+.. .. .+. ...++|.++...+.. +..++..++.
T Consensus 251 ~~l~GlRiG~~~~~~~~~~~~-~~~~~~l~~~~~--~~----~~~--~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~ 321 (405)
T 3k7y_A 251 MSLYGERAGALHIVCKNQEEK-KIVFNNLCFIVR--KF----YSS--PVIHTNRILCQLLNNQNLKLNWIKELSQLSQRI 321 (405)
T ss_dssp SCCTTTTEEEEEEECSSHHHH-HHHHHHHHHHHH--TT----TSS--CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccceEEEEEeCCHHHH-HHHHHHHHHHHh--cc----cCC--CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5 489999998752 22211 111000000000 00 011 112233333322211 2234455667
Q ss_pred HHHHHHHHHHHh----cCCC---eEEeeCCCCccEEEE-EecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEE
Q 010897 348 MGNARALREGLE----KTGR---FEILSKDVGVPLVAF-SLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRV 419 (498)
Q Consensus 348 ~~~a~~l~~~L~----~~~~---~~~~~~~~~~~~v~f-~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv 419 (498)
.++++.+.+.|+ +++. +++..+ ..++++| .++ . +++++|.++|+.+. |. -|+
T Consensus 322 ~~~R~~l~~~L~~~~~~~g~~~~~~~~~p--~gg~f~~~~l~------~-~~~~~L~~~gV~v~----p~-------~Ri 381 (405)
T 3k7y_A 322 TNNRILFFNKLETYQKKYNLNYDWNVYKK--QRGLFSFVPLL------A-KIAEHLKTHHIYII----NN-------GRI 381 (405)
T ss_dssp HHHHHHHHHHHHHHGGGGTCCCCGGGGSS--CCSSEEECGGG------G-GGTTTTTTTTEECC----TT-------SEE
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCCccccC--CceEEEecCCC------H-HHHHHHHHCCEeec----CC-------CeE
Confidence 788999999999 7752 444433 4555554 332 1 44567777787643 21 199
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHH
Q 010897 420 VVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 420 ~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
++. ..+.++++++++.|++++++
T Consensus 382 s~a-~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 382 NVS-GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp EGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred EEe-ccCHHHHHHHHHHHHHHHhh
Confidence 985 34678899999999988764
No 199
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.85 E-value=9.2e-19 Score=181.46 Aligned_cols=338 Identities=12% Similarity=0.028 Sum_probs=199.8
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+...... ......+...++.++++++++.+. . +++|+||++|+..++.+++..+..
T Consensus 66 ~~p~v~~A~~~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~~~~-----~-v~~~~ggseA~~~al~~~~~~~~~---- 133 (452)
T 3n5m_A 66 GRKELAEAAYKQLQTLSYF--PMSQSHEPAIKLAEKLNEWLGGEY-----V-IFFSNSGSEANETAFKIARQYYAQ---- 133 (452)
T ss_dssp CCHHHHHHHHHHHTTCCCC--CTTSEEHHHHHHHHHHHHHHTSCE-----E-EEEESSHHHHHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHhcCCc--ccccCCHHHHHHHHHHHHhCCCCc-----e-EEEeCchHHHHHHHHHHHHHHHHh----
Confidence 3688999999888764332 222345666788889999988653 2 999999999999999988743211
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCC-------------eeEEEEecCCcccc---C---------HHHHHHHhh--
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEEGYYVM---N---------PVKAVELVD-- 200 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~-------------~~~~v~~~~~~~~~---d---------~~~L~~~i~-- 200 (498)
.|.+ ++++|++.+++|..+...+..++. ++..++... .++. | +++|+++++
T Consensus 134 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~~~ 211 (452)
T 3n5m_A 134 KGEP-HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPD-CYRMPGIERENIYDVECVKEVDRVMTWE 211 (452)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCC-TTTSTTTTTSCGGGCHHHHHHHHHHHHH
T ss_pred cCCC-CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCc-cccCccCCchhhHHHHHHHHHHHHHHhc
Confidence 1111 245777776665543333333321 234444321 1111 1 899999997
Q ss_pred --hCCeEEEEeec-cCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEE
Q 010897 201 --ENTICVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSIN 272 (498)
Q Consensus 201 --~~t~~v~~~~~-~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~ 272 (498)
+++++|++..+ +| +|.+.| +++|.++|++| |+++++|++|.++.. .......+ +++ ..|.++
T Consensus 212 ~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~g~~~~~~~~~~-~~di~t 281 (452)
T 3n5m_A 212 LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH------GALLISDEVICGFGR--TGKAFGFMNYDV-KPDIIT 281 (452)
T ss_dssp CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTC-CCSEEE
T ss_pred CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc------CCEEEEecchhCCCc--ccccchhhhcCC-CCCEEe
Confidence 45666666666 68 998877 99999999999 999999999987631 11111111 111 256666
Q ss_pred EcCCccCCCC-CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 010897 273 VSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNA 351 (498)
Q Consensus 273 ~s~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a 351 (498)
++ |.+.++ .++|+++.+.+ . .+.+... ..........+ ++-+.....+..++++.+..+. ..++..++.
T Consensus 282 ~s--K~l~~G~~~ig~~~~~~~-i-~~~~~~~-~~~~~~~~~~t--~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~ 351 (452)
T 3n5m_A 282 MA--KGITSAYLPLSATAVKRE-I-YEAFKGK-GEYEFFRHINT--FGGNPAACALALKNLEIIENEN---LIERSAQMG 351 (452)
T ss_dssp EC--GGGGTTSSCCEEEEEEHH-H-HGGGCSS-STTCSCCCCCS--STTCHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred ec--ccccCCCcceEEEEECHH-H-HHHHhhc-cCCCCccccCC--CCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHH
Confidence 54 766666 88999987542 2 1221100 00000000111 2222234444445554443333 344455555
Q ss_pred HHHHHHHh----cCCCeEEeeCCCCccEEEEEecCC-CC---CC---HHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEe
Q 010897 352 RALREGLE----KTGRFEILSKDVGVPLVAFSLKDS-SA---HT---VFEISEGLRKFGWIVPAYTMPANAENVAVLRVV 420 (498)
Q Consensus 352 ~~l~~~L~----~~~~~~~~~~~~~~~~v~f~~~~~-~~---~~---~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~ 420 (498)
+++++.|+ +++.+..+.. ...++.+.+... .. .+ ..++++.|.++|+.+.....+ ......++|++
T Consensus 352 ~~l~~~L~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-~~~~~~~iRi~ 428 (452)
T 3n5m_A 352 SLLLEQLKEEIGEHPLVGDIRG--KGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMT-TAGYNNILTLA 428 (452)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEE--SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTS-STTCCCEEEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEEE--EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcc-cCCCCCEEEEE
Confidence 55555554 4454444332 344555555211 00 11 247889999999987654322 12335789999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHH
Q 010897 421 VREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 421 v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.....|+++++++++.|+++++
T Consensus 429 ~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 429 PPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 8888899999999999988875
No 200
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.84 E-value=8e-19 Score=182.38 Aligned_cols=345 Identities=14% Similarity=-0.001 Sum_probs=204.4
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+......+.......+...++.++++++++.+. ..+.+|+||++|+..++++++..+..
T Consensus 68 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~gGseA~~~al~~~~~~~~~---- 138 (460)
T 3gju_A 68 GRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGM-----SRVYFGLSGSDANETNIKLIWYYNNV---- 138 (460)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence 358888888888766433222233444566788888999875543 24999999999999999988764321
Q ss_pred cCCCCCCcEEEEcCCchh-HHHHHHHHcC------------CeeEEEEecC----CccccC--------HHHHHHHhh--
Q 010897 148 QGKPYDKPNIVTGANVQV-CWEKFARYFE------------VELKEVKLEE----GYYVMN--------PVKAVELVD-- 200 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~-~~~~~~~~~g------------~~~~~v~~~~----~~~~~d--------~~~L~~~i~-- 200 (498)
.|.+ ++++|++.+++|. ....+....| .++..++... ++..++ +++|+++++
T Consensus 139 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~ 217 (460)
T 3gju_A 139 LGRP-EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE 217 (460)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc
Confidence 1211 2457777665554 3333323222 2356666432 111233 688998887
Q ss_pred --hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEE
Q 010897 201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINV 273 (498)
Q Consensus 201 --~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~ 273 (498)
+++++|++...++++|.+.+ +++|.++|++| |+++++|++|.++.. .......+ +++ ..|.+++
T Consensus 218 ~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~g~~~~~~~~~~-~pdi~t~ 288 (460)
T 3gju_A 218 GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY------DVLLVADEVVTGFGR--LGTMFGSDHYGI-KPDLITI 288 (460)
T ss_dssp CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHHTC-CCSEEEE
T ss_pred CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--ccccchHhhcCC-CCCeeee
Confidence 44566666666666777665 99999999999 999999999987631 11111111 122 2466665
Q ss_pred cCCccCCCC-CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHH-HHHHHHHHHH
Q 010897 274 SGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYK-NIMENCMGNA 351 (498)
Q Consensus 274 s~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~-~~~~~~~~~a 351 (498)
+ |.+.++ .++|+++.+.+ . .+.+..............+ ++-+.....+..++|+.+..+.+. +..+....++
T Consensus 289 s--K~l~gG~~~lg~v~~~~~-i-~~~~~~~~~~~~~~~~~~t--~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~ 362 (460)
T 3gju_A 289 A--KGLTSAYAPLSGVIVADR-V-WQVLVQGSDKLGSLGHGWT--YSAHPICVAAGVANLELIDEMDLVTNAGETGAYFR 362 (460)
T ss_dssp C--GGGTTTSSCCEEEEEEHH-H-HHHHHHHHHHHCSCSCCCT--TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred e--hhhcCCCCCeEEEEECHH-H-HHHHhcccccccccccCCC--CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4 887666 68899887642 1 1211100000000000111 222223444445555544444433 3333333355
Q ss_pred HHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCC---------CCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeec
Q 010897 352 RALREGLEKTGRFEILSKDVGVPLVAFSLKDSSA---------HTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVR 422 (498)
Q Consensus 352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~ 422 (498)
+.|.+.+++.+.+..+.. ...++.+.+..... ....++.+.|.++|+++.... ...++|++..
T Consensus 363 ~~l~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~iRi~~~ 434 (460)
T 3gju_A 363 AELAKAVGGHKNVGEVRG--DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP------QGDILGFAPP 434 (460)
T ss_dssp HHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS------SSCEEEECCC
T ss_pred HHHHHHHhcCCCeEEEee--eeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC------CCCEEEEECC
Confidence 555566666765544433 35677777643210 114678999999998765421 2467999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 010897 423 EDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 423 ~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
...|+++++++++.|+++++++.
T Consensus 435 ~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 435 LCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998754
No 201
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.84 E-value=3.9e-20 Score=189.12 Aligned_cols=336 Identities=16% Similarity=0.093 Sum_probs=201.7
Q ss_pred Cccccccc-CC-ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCC--CCCcceeeecChhHHHHHH
Q 010897 58 LNLASFVT-TW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVAD--DKTAVGVGTVGSSEAIMLA 133 (498)
Q Consensus 58 ~~~~~~~~-~~-~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~--~~~~~~~~t~g~sea~~la 133 (498)
++|+...+ .. .++.+.+.+.++.......|....+..++++.+.+++ .|..... .+......|.|+++++.++
T Consensus 44 i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~~i~~~~~~~g~ga~~~~ 120 (409)
T 4eu1_A 44 VNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLC---FGPTCAALRDGRIASCQTLGGTGALRIG 120 (409)
T ss_dssp EECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTTCEEEEEESHHHHHHHHH
T ss_pred eeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHH---cCCCchhhccCceeeeecccchHHHHHH
Confidence 56666554 22 2344556666554434444555556677777766665 2543100 0111114588899998766
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec-CCccccCHHHHHHHhhh---CCeEEEEe
Q 010897 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDE---NTICVAAI 209 (498)
Q Consensus 134 ~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~L~~~i~~---~t~~v~~~ 209 (498)
...++.- ...+++|+++.++|..+...++..|++++.+|+. ++++.+|+++|++++++ ++++++++
T Consensus 121 ~~~~~~~----------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~ 190 (409)
T 4eu1_A 121 GDLLNRF----------VANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHA 190 (409)
T ss_dssp HHHGGGT----------SSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEES
T ss_pred HHHHHHh----------cCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEEC
Confidence 5443211 1124799999999999999999999999999984 44588999999999963 45667779
Q ss_pred eccCCcccccC---HHHHHHHHHHhhcccCCCceEEEecCcccccccccC-CCCc-ccc-CCCCeeEEEEcCCccCC-CC
Q 010897 210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY-PDLE-WDF-RLPLVKSINVSGHKYGL-VY 282 (498)
Q Consensus 210 ~~~t~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~-~~~~-~~~-~~~~~dsi~~s~hK~l~-~p 282 (498)
+|+||||.+.+ +++|.++|+++ |+++++|++|+++...-.. +... ..+ ....-..+..+.+|.++ .+
T Consensus 191 ~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 264 (409)
T 4eu1_A 191 CAHNPTGVDPTHDDWRQVCDVIKRR------NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG 264 (409)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCcc
Confidence 99999999976 45599999999 9999999999987521000 0000 011 11112344567778764 67
Q ss_pred CCeEEE--EEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhc--------HHHHHHHHHHHHHHHH
Q 010897 283 AGVGWV--VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEGYKNIMENCMGNAR 352 (498)
Q Consensus 283 ~g~g~~--~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg--------~~g~~~~~~~~~~~a~ 352 (498)
.++||+ ++.+++.. +.+... +.... .... .+. ..+.++++...+. .+.+++..++..++++
T Consensus 265 ~riG~~~~v~~~~~~~-~~l~~~---~~~~~-~~~~-~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (409)
T 4eu1_A 265 HRCGALHISTASAEEA-KRLVSQ---LALLI-RPMY-NNP---PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRK 335 (409)
T ss_dssp GCCEEEEEECSSHHHH-HHHHHH---HHHHH-HHHH-SSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCCHHHH-HHHHHH---HHHHH-hhhc-CCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788997 55543210 000000 00000 0000 111 1233333333332 2345677788888999
Q ss_pred HHHHHHhcCCC---eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCeeEEEEeecCCCCHH
Q 010897 353 ALREGLEKTGR---FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENVAVLRVVVREDFSRS 428 (498)
Q Consensus 353 ~l~~~L~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~ 428 (498)
++.+.|++++. +++..+ ..+++.| + +.+. +++.+|. ++|+.+.. . .|+++.. .+.+
T Consensus 336 ~l~~~L~~~g~~~~~~~~~~--~~~~~~~-~----~~~~-~~~~~ll~~~gv~v~p----~-------~Ri~~~~-~~~~ 395 (409)
T 4eu1_A 336 RLVSELKACGSVHDWSHIER--QVGMMAY-T----GLTR-EQVELLRSEYHIYMTL----N-------GRAAVSG-LNST 395 (409)
T ss_dssp HHHHHHHHTTCCSCCHHHHH--SCSSEEE-C----CCCH-HHHHHHHHHHCEECCT----T-------CEEEGGG-CCTT
T ss_pred HHHHHHHhcCCCCCcceecC--CceEEEE-e----CCCH-HHHHHHHHcCCEEEcC----C-------CEEEEEe-cCHh
Confidence 99999998752 444433 3455555 1 1233 4455554 67987532 1 4888854 4667
Q ss_pred HHHHHHHHHHHHH
Q 010897 429 LVERLISHIEEVL 441 (498)
Q Consensus 429 ~~~~l~~~l~~~l 441 (498)
+++++++.|++++
T Consensus 396 ~i~~~~~~l~~~l 408 (409)
T 4eu1_A 396 NVEYVSQAIHNVT 408 (409)
T ss_dssp THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 8999999988765
No 202
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.84 E-value=4.1e-20 Score=188.11 Aligned_cols=289 Identities=17% Similarity=0.088 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHH----HHH
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FAR 172 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~----~~~ 172 (498)
..++++.+++++|.+. .+++++|++|+.+++. +.++ +++|+++.+.|.+... .++
T Consensus 57 ~~~lr~~la~~~g~~~-------~i~~~sGt~a~~~al~-~~~~-------------gd~Vi~~~~~y~~~~~~~~~~~~ 115 (393)
T 1n8p_A 57 RENLERAVAALENAQY-------GLAFSSGSATTATILQ-SLPQ-------------GSHAVSIGDVYGGTHRYFTKVAN 115 (393)
T ss_dssp HHHHHHHHHHHTTCSE-------EEEESCHHHHHHHHHH-TSCS-------------SCEEEEESSCCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhCCCc-------EEEECChHHHHHHHHH-HcCC-------------CCEEEEeCCCchHHHHHHHHHHH
Confidence 3466777999999862 6666667999998887 4321 4689999999984433 456
Q ss_pred HcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccc
Q 010897 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA 252 (498)
Q Consensus 173 ~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~ 252 (498)
..|++++.+|++ | ++|+++++++|++|++++++|++|.+.|+++|.++|+++++ ..|+++|+|++|+.+..
T Consensus 116 ~~G~~v~~v~~~------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~--~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 116 AHGVETSFTNDL------L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAA--GQDVILVVDNTFLSPYI 186 (393)
T ss_dssp TTCSCCEEESSH------H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTT--TTTCEEEEECTTTHHHH
T ss_pred HcCcEEEEeCCC------h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCC--CCCCEEEEeCCcccccc
Confidence 679999998864 7 89999999899999999999999999999999999999821 11699999999988753
Q ss_pred cccCCCCccccCCCCeeEEEEcCCccCCCCCC--e-EEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHH
Q 010897 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--V-GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY 329 (498)
Q Consensus 253 ~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g--~-g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~ 329 (498)
. .. ..+ ++|++..|+||+++ +.| + |+++.++++.+ +.+....... +... ....++
T Consensus 187 --~--~~-~~~---~~di~~~S~sK~~g-~~G~rigG~~~~~~~~~~-~~l~~~~~~~----------g~~~--~~~~~~ 244 (393)
T 1n8p_A 187 --S--NP-LNF---GADIVVHSATKYIN-GHSDVVLGVLATNNKPLY-ERLQFLQNAI----------GAIP--SPFDAW 244 (393)
T ss_dssp --C--CG-GGG---TCSEEEEETTTTTT-CSSCCCCEEEEESCHHHH-HHHHHHHHHH----------CCCC--CHHHHH
T ss_pred --C--CH-HHc---CCeEEEEECccccc-CCCCceeEEEEeCCHHHH-HHHHHHHHhc----------CCCC--CHHHHH
Confidence 1 11 111 48999999999875 444 6 88776543322 1111000001 1111 112233
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-eE-EeeCC--------------C--C-ccEEEEEecCCCCCCHHH
Q 010897 330 YQFIRLGFEGYKNIMENCMGNARALREGLEKTGR-FE-ILSKD--------------V--G-VPLVAFSLKDSSAHTVFE 390 (498)
Q Consensus 330 ~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~-~~-~~~~~--------------~--~-~~~v~f~~~~~~~~~~~~ 390 (498)
+++..+ +.+..++++..++++.+.+.|++.+. +. +..+. . . .+++.|.+++. ..+...
T Consensus 245 ~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~ 321 (393)
T 1n8p_A 245 LTHRGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-AEAASK 321 (393)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-HHHHHH
T ss_pred HHHhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-HHHHHH
Confidence 333222 33556777778888889999988775 44 22110 0 2 57899998641 123456
Q ss_pred HHHHHHhcCcEeeee------cCC---CC-----------CCCeeEEEEeecCCCCHHHHHHHHHHHHHH
Q 010897 391 ISEGLRKFGWIVPAY------TMP---AN-----------AENVAVLRVVVREDFSRSLVERLISHIEEV 440 (498)
Q Consensus 391 l~~~L~~~G~~v~~~------~~~---~~-----------~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~ 440 (498)
+.+.|...++.++.. ..| .+ ....+.+|+|++...+.++++.+.++|+++
T Consensus 322 ~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 322 FASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 666665444333211 111 11 111468999999877777776666666543
No 203
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.83 E-value=1.7e-18 Score=179.25 Aligned_cols=336 Identities=15% Similarity=0.065 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHhccCCCCCcCC-cchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 69 EPECDKLVMASINKNYVDMDEY-PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~~~~~~~-~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
+|.+.+++.+.+.... +..+ .....+..++.+.++++++.+. ..+++|+||++|+.+++.+++..+. .
T Consensus 68 ~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggsea~~~al~~~~~~~~----~ 136 (449)
T 3a8u_X 68 RKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTPGNL-----NHVFFTDSGSECALTAVKMVRAYWR----L 136 (449)
T ss_dssp CHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHH----H
T ss_pred CHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEcCcHHHHHHHHHHHHHHHHH----h
Confidence 6889999998887643 1111 2334455677788999886543 2499999999999999988764221 1
Q ss_pred cCCCCCCcEEEEcCC-chhHHHHHHHHcCC------------eeEEEEecCCccc-----cC--------HHHHHHHhh-
Q 010897 148 QGKPYDKPNIVTGAN-VQVCWEKFARYFEV------------ELKEVKLEEGYYV-----MN--------PVKAVELVD- 200 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~-~h~~~~~~~~~~g~------------~~~~v~~~~~~~~-----~d--------~~~L~~~i~- 200 (498)
.|.+ ++++|++.++ .|.+...++...|. +++.+++... +. +| +++|+++++
T Consensus 137 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~d~~~~~~~~~~~le~~l~~ 214 (449)
T 3a8u_X 137 KGQA-TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLL-ASNAYSRGMPKEGGIALADELLKLIEL 214 (449)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCC-GGGTTCSSSCSSSHHHHHHHHHHHHHH
T ss_pred cCCC-CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcc-ccCccccCChHHHHHHHHHHHHHHHHh
Confidence 1211 1356776555 44444445555442 3556665321 22 46 999999997
Q ss_pred ---hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEE
Q 010897 201 ---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSIN 272 (498)
Q Consensus 201 ---~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~ 272 (498)
+++++|++...++++|.+.| +++|.++|+++ |++|++|++|.++.. .......+ ++. ..|.++
T Consensus 215 ~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~-~~di~s 285 (449)
T 3a8u_X 215 HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH------NILLVFDEVITGFGR--TGSMFGADSFGV-TPDLMC 285 (449)
T ss_dssp HCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEEE
T ss_pred cCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh------CCEEEEeccccCccc--cCcchhhhhcCC-CCCEEE
Confidence 35555655544466899888 99999999999 999999999976531 11111111 121 246664
Q ss_pred EcCCccCCCC-CCeEEEEEeCCCCCCcccccccC--ccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 010897 273 VSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHIN--YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMG 349 (498)
Q Consensus 273 ~s~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~--yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~ 349 (498)
+ .|++.++ .++|+++.++ +.. +.+..... .........+ ++-+.....+..++++.+..+ +..++..+
T Consensus 286 ~--sK~l~~G~~~~G~~~~~~-~~~-~~l~~~~~~~~~~~~~~~~t--~~~~~~~~aa~~aal~~~~~~---~~~~~~~~ 356 (449)
T 3a8u_X 286 I--AKQVTNGAIPMGAVIAST-EIY-QTFMNQPTPEYAVEFPHGYT--YSAHPVACAAGLAALCLLQKE---NLVQSVAE 356 (449)
T ss_dssp E--CGGGGTTSSCCEEEEEEH-HHH-HHHHTCSSCTTSCSSCCCCT--TTTCHHHHHHHHHHHHHHHHT---THHHHHHH
T ss_pred E--cccccCCCCceEEEEECH-HHH-HHhhccCcccccccccccCC--CcccHHHHHHHHHHHHHHHhc---CHHHHHHH
Confidence 4 4877654 5589988764 221 22111000 0000000111 222233444455555544333 45677778
Q ss_pred HHHHHHHHHhcCCCeEEeeC-CCCccEEEEEecCCC-CC--CHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCC
Q 010897 350 NARALREGLEKTGRFEILSK-DVGVPLVAFSLKDSS-AH--TVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDF 425 (498)
Q Consensus 350 ~a~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~-~~--~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~ 425 (498)
+++++.+.|++++.+.++.. +...+++.+.++... .. +..++.+.|.++|+.+... + .++|++.....
T Consensus 357 ~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------g-~~iRis~~~~~ 428 (449)
T 3a8u_X 357 VAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG-------G-DTLQFGPTFNS 428 (449)
T ss_dssp HHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE-------T-TEEEECCCTTC
T ss_pred HHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC-------C-CEEEEECCCcC
Confidence 88888888887543321111 114578888885421 11 2347999999999887542 2 57999987778
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 010897 426 SRSLVERLISHIEEVLKE 443 (498)
Q Consensus 426 t~~~~~~l~~~l~~~l~~ 443 (498)
++++++++++.|+++++.
T Consensus 429 t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 429 KPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999988765
No 204
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.83 E-value=1.6e-18 Score=180.04 Aligned_cols=338 Identities=14% Similarity=0.039 Sum_probs=201.2
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.++.....+.......+...++.++++++++.+.+ .+.+|+||++|+..++.+++..+..
T Consensus 67 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-----~v~~~~ggseA~~~al~~~~~~~~~---- 137 (459)
T 4a6r_A 67 GRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFD-----RVFYTNSGSESVDTMIRMVRRYWDV---- 137 (459)
T ss_dssp CCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCC-----EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCC-----EEEEeCchHHHHHHHHHHHHHHHHh----
Confidence 3688999998888764432332234456667888999999876542 4999999999999999998764321
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHcCC-------------eeEEEEecC----CccccC--------HHHHHHHhh--
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYFEV-------------ELKEVKLEE----GYYVMN--------PVKAVELVD-- 200 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~-------------~~~~v~~~~----~~~~~d--------~~~L~~~i~-- 200 (498)
.|.+ ++++|++.+++|..+...+..++. ++..++... +++ +| +++|++++.
T Consensus 138 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~ 215 (459)
T 4a6r_A 138 QGKP-EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI 215 (459)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence 1222 245777766655533333333221 344555322 112 45 788998887
Q ss_pred --hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEE
Q 010897 201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINV 273 (498)
Q Consensus 201 --~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~ 273 (498)
+++.+|++...++++|.+.+ +++|.++|++| |+++++|++|.++.. ........ +++ ..|.+++
T Consensus 216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~G~~~~~~~~~~-~pdi~t~ 286 (459)
T 4a6r_A 216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY------DVLLVADEVICGFGR--TGEWFGHQHFGF-QPDLFTA 286 (459)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEEEE
T ss_pred CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--ccccchHhhcCC-CCCeeeh
Confidence 33455555444555567666 99999999999 999999999987631 11111111 122 2466666
Q ss_pred cCCccCCCC-CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHH--HHHHH
Q 010897 274 SGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIME--NCMGN 350 (498)
Q Consensus 274 s~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~--~~~~~ 350 (498)
+ |.+.++ .++|+++.+.+ .. +.+... .......+ ++-+.....+..++|+.+..+.+.+..+ ....+
T Consensus 287 s--K~l~gg~~~lg~v~~~~~-i~-~~~~~~----~~~~~~~t--~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~ 356 (459)
T 4a6r_A 287 A--KGLSSGYLPIGAVFVGKR-VA-EGLIAG----GDFNHGFT--YSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYM 356 (459)
T ss_dssp C--GGGGTTSSCCEEEEECHH-HH-HHHHHH----CTTHHHHH--HCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHH
T ss_pred h--hhhcCCCCCccceeeCHH-HH-HHhhcC----CCcccCCC--CCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4 766555 68899886432 21 111100 00000011 2222233344445554443443333222 22234
Q ss_pred HHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCCC---------CCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee
Q 010897 351 ARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSA---------HTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421 (498)
Q Consensus 351 a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v 421 (498)
++.|.+.|.+.+.+..+.. ...++.|.+..... ....++++.|.++|+++... + .++|++.
T Consensus 357 ~~~l~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------g-~~iRi~~ 426 (459)
T 4a6r_A 357 QKRWRETFSRFEHVDDVRG--VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC-------G-DHIVSAP 426 (459)
T ss_dssp HHHHHHHHTTCTTEEEEEE--ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE-------T-TEEEECC
T ss_pred HHHHHHHHhcCCCeEEEEE--EEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC-------C-CEEEEEC
Confidence 4444455555565544433 45677777743210 01568899999999887542 1 5799998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 422 REDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 422 ~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
....|+++++++++.|+++++++.
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 427 PLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999987764
No 205
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.83 E-value=1.5e-17 Score=172.25 Aligned_cols=338 Identities=12% Similarity=0.056 Sum_probs=195.8
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+...... .......+...++.++++++++... ..+.+|+||++|+..|+.+++..+..
T Consensus 61 ~~p~v~~A~~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGseA~~~al~~~~~~~~~---- 130 (448)
T 3dod_A 61 RKKELDDAIKKQLGKIAHS-TLLGMTNVPATQLAETLIDISPKKL-----TRVFYSDSGAEAMEIALKMAFQYWKN---- 130 (448)
T ss_dssp SCHHHHHHHHHHHTTCSCC-CCSSSEEHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccCc-cccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence 3688999999888764322 1222344566688889999986443 24999999999999999998764321
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHc-C------------CeeEEEEecCCcccc-----------CHHHHHHHhh---
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYF-E------------VELKEVKLEEGYYVM-----------NPVKAVELVD--- 200 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~-g------------~~~~~v~~~~~~~~~-----------d~~~L~~~i~--- 200 (498)
.|.+ ++++|++.+++|..+...+..+ | .++..+|... .|+. |+++|+++++
T Consensus 131 ~G~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~ 208 (448)
T 3dod_A 131 IGKP-EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY-VYRSESGDPDECRDQCLRELAQLLEEHH 208 (448)
T ss_dssp TTCT-TCCEEEEEC-----------------------------CEEECCCC-CTTSSSCCHHHHHHHHHHHHHHHHHHHG
T ss_pred hCCC-CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc-cccCCccchhhhhHHHHHHHHHHHHhCC
Confidence 1211 1367888777665433322222 2 1234454432 2333 5889999987
Q ss_pred hCCeEEEEeecc-CCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEc
Q 010897 201 ENTICVAAILGS-TLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVS 274 (498)
Q Consensus 201 ~~t~~v~~~~~~-t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s 274 (498)
+++++|++...+ +++|.+.+ +++|.++|++| |+++++|++|.++.. ........ +++ ..|.++++
T Consensus 209 ~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~lI~DEv~~g~g~--~g~~~a~~~~~~-~~di~t~s 279 (448)
T 3dod_A 209 EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY------DVLMIVDEVATGFGR--TGKMFACEHENV-QPDLMAAG 279 (448)
T ss_dssp GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEEEEC
T ss_pred CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--ccchhhhhhcCC-CCCEEEec
Confidence 345555555555 67787766 99999999999 999999999987631 11111111 121 24666554
Q ss_pred CCccCCCC-CCeEEEEEeCCCCCCcccccccCccCC--CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 010897 275 GHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNA 351 (498)
Q Consensus 275 ~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~--~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a 351 (498)
|.+.++ .++|+++.+.+ . .+.+.. .+... .....+ ++-+.....+..++|+.+..+. ..++..++.
T Consensus 280 --K~l~~G~~~ig~v~~~~~-~-~~~~~~--~~~~~~~~~~~~t--~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~ 348 (448)
T 3dod_A 280 --KGITGGYLPIAVTFATED-I-YKAFYD--DYENLKTFFHGHS--YTGNQLGCAVALENLALFESEN---IVEQVAEKS 348 (448)
T ss_dssp --GGGGTTSSCCEEEEEEHH-H-HHTTCS--CGGGCCCCCCCCT--TTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred --ccccCCcCceEEEEECHH-H-HHHhhh--ccccCCcccccCC--CCcCHHHHHHHHHHHHHHhccc---HHHHHHHHH
Confidence 877777 48899887642 1 111110 00000 000111 2222334444445555443333 344444555
Q ss_pred HHHHHHHh---cCCCeEEeeCCCCccEEEEEecCCCCC---------CHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEE
Q 010897 352 RALREGLE---KTGRFEILSKDVGVPLVAFSLKDSSAH---------TVFEISEGLRKFGWIVPAYTMPANAENVAVLRV 419 (498)
Q Consensus 352 ~~l~~~L~---~~~~~~~~~~~~~~~~v~f~~~~~~~~---------~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv 419 (498)
+++++.|+ +.+.+..+.. ...++.+.+...... ...++++.|.++|+.+... ..++|+
T Consensus 349 ~~~~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~iRi 418 (448)
T 3dod_A 349 KKLHFLLQDLHALPHVGDIRQ--LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL--------GDVIAF 418 (448)
T ss_dssp HHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE--------TTEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEe--eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc--------CCEEEE
Confidence 55555544 4443333322 345677777432110 0368999999999876432 257999
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHcC
Q 010897 420 VVREDFSRSLVERLISHIEEVLKEIESL 447 (498)
Q Consensus 420 ~v~~~~t~~~~~~l~~~l~~~l~~l~~~ 447 (498)
+.....|+++++++++.|+++++++...
T Consensus 419 ~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 419 LPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 8888889999999999999999876543
No 206
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.83 E-value=1.1e-18 Score=181.01 Aligned_cols=335 Identities=11% Similarity=-0.024 Sum_probs=207.7
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+....... ......+...+++++++++++.+. ..+.+|+||++|+..|+++++..|...
T Consensus 92 ~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~~L~e~la~~~~~~~-----~~v~~~~sGseA~~~Alk~a~~~~~~~--- 162 (457)
T 3tfu_A 92 GHPALDQALTTQLRVMNHVM-FGGLTHEPAARLAKLLVDITPAGL-----DTVFFSDSGSVSVEVAAKMALQYWRGR--- 162 (457)
T ss_dssp TCHHHHHHHHHHHHHCSCCC-SSSEECHHHHHHHHHHHHHSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHHT---
T ss_pred CCHHHHHHHHHHHHhccCcc-ccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCcHHHHHHHHHHHHHHHHHhc---
Confidence 46889999888877643221 111233455578888999996543 249999999999999999887654321
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHc--------------CCeeEEEEecCCc-cccCHHHHHHHhh---hCCeEEEEe
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYF--------------EVELKEVKLEEGY-YVMNPVKAVELVD---ENTICVAAI 209 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~--------------g~~~~~v~~~~~~-~~~d~~~L~~~i~---~~t~~v~~~ 209 (498)
|.+ ++.+||+.+++|......+... ..++..++...+. ...|+++|+++++ +++++|++.
T Consensus 163 -g~~-g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~e 240 (457)
T 3tfu_A 163 -GLP-GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVE 240 (457)
T ss_dssp -TCT-TCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred -CCC-CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 211 2346776555443222222222 2234455543221 2358899999998 567777777
Q ss_pred e-ccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCccCCCC-
Q 010897 210 L-GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVY- 282 (498)
Q Consensus 210 ~-~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~l~~p- 282 (498)
. +++++|.+.+ +++|.++|+++ |+++++|++|.++.. .......+ ++. ..|.+++ .|.+.++
T Consensus 241 p~~~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~gr--~G~~~a~~~~~~-~pdiit~--sK~l~gG~ 309 (457)
T 3tfu_A 241 PVVQGAGGMRFHDPRYLHDLRDICRRY------EVLLIFDEIATGFGR--TGALFAADHAGV-SPDIMCV--GKALTGGY 309 (457)
T ss_dssp SSEECTTTCEECCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCSEEEE--CGGGGTTS
T ss_pred CCCcCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEcCccCCcc--ccchhHhHhcCC-CceEEEE--ChhhhCCC
Confidence 7 7888998876 99999999999 999999999987631 11111111 121 2566655 4766555
Q ss_pred CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 010897 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT- 361 (498)
Q Consensus 283 ~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~- 361 (498)
.++|+++.+++ . .+.+.... .+......+ ++-+.....+..++|+.+..+ ...++..++.+++.+.|+++
T Consensus 310 ~~lG~v~~~~~-i-~~~~~~~~--~~~~~~~~t--~~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~ 380 (457)
T 3tfu_A 310 LSLAATLCTAD-V-AHTISAGA--AGALMHGPT--FMANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTAR 380 (457)
T ss_dssp SCCEEEEEEHH-H-HHHHHHSS--SCSCCCCCT--TTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGG
T ss_pred cceEEEEEcHH-H-HHHhhccC--CCceeEecC--CCcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHh
Confidence 58999987652 1 12111000 000000111 222233444445555544333 44566677788888888765
Q ss_pred --CCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 362 --GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 362 --~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
+.+..+.. ...++.|.+.. ..+..++.++|.++|+.+... ..++|++.....|+++++++++.|++
T Consensus 381 ~~~~v~~vr~--~G~~~~i~l~~--~~~~~~~~~~l~~~Gv~v~~~--------~~~lRi~p~~~~t~eei~~~l~~L~~ 448 (457)
T 3tfu_A 381 ALPAVTDVRV--CGAIGVIECDR--PVDLAVATPAALDRGVWLRPF--------RNLVYAMPPYICTPAEITQITSAMVE 448 (457)
T ss_dssp GSTTEEEEEE--CSSCEEEEESS--CCCHHHHHHHHHHTTEECCCB--------TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cCCCeeeeec--CCeEEEEEECC--cccHHHHHHHHHHCCeEEEec--------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44443322 35677788754 246789999999999876431 24699987777899999999999999
Q ss_pred HHHHHH
Q 010897 440 VLKEIE 445 (498)
Q Consensus 440 ~l~~l~ 445 (498)
+++++.
T Consensus 449 ~l~~~~ 454 (457)
T 3tfu_A 449 VARLVG 454 (457)
T ss_dssp HHHHC-
T ss_pred HHHHhc
Confidence 987643
No 207
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.83 E-value=6.3e-19 Score=189.61 Aligned_cols=301 Identities=13% Similarity=0.100 Sum_probs=202.4
Q ss_pred HHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCee
Q 010897 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL 178 (498)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~ 178 (498)
++.+.+|+++|.+. ...+++|++.||..++.++.++ ++.|+++.+.|.|+..++++.|+++
T Consensus 199 eaE~~lA~~fGa~~------a~~v~nGts~An~~ai~al~~p-------------GD~VLv~r~~H~S~~~~l~lsGa~p 259 (715)
T 3n75_A 199 EAEQYIARVFNADR------SYMVTNGTSTANKIVGMYSAPA-------------GSTILIDRNCHKSLTHLMMMSDVTP 259 (715)
T ss_dssp HHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCCT-------------TCEEEEESSCCHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHhCCCC------ceEECcHHHHHHHHHHHHhCCC-------------CCEEEECCCccHHHHHHHHHcCCEE
Confidence 55666999999974 2556677789998888777543 5799999999999999999999999
Q ss_pred EEEEecCCcccc---------CHHHHHHHhhhC--Ce---EEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEe
Q 010897 179 KEVKLEEGYYVM---------NPVKAVELVDEN--TI---CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD 244 (498)
Q Consensus 179 ~~v~~~~~~~~~---------d~~~L~~~i~~~--t~---~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD 244 (498)
++++.+.+.|.+ |+++|++++.++ ++ +|++++| |++|.+.|+++|.++|+++ + ++||
T Consensus 260 v~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~------~--livD 330 (715)
T 3n75_A 260 IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK------S--IHFD 330 (715)
T ss_dssp EEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCS------E--EEEE
T ss_pred EEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcC------c--EEEc
Confidence 999876434443 899999999864 34 7889999 8999999999999999765 3 8999
Q ss_pred cCcccccccccCCCCc--cccCCC-CeeE---EEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccC
Q 010897 245 AASGGFIAPFLYPDLE--WDFRLP-LVKS---INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNF 318 (498)
Q Consensus 245 ~A~~g~~~~~~~~~~~--~~~~~~-~~ds---i~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~ 318 (498)
+||+.+.. +.+..+ ..+... .+|. ++.|+||++.++.+.|++.+++. .....+.....++.+ .
T Consensus 331 EAH~~~~~--f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-i~~~~~~~~~~~~~S--------T 399 (715)
T 3n75_A 331 SAWVPYTN--FSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMMHTT--------T 399 (715)
T ss_dssp CTTCTTGG--GSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-CCHHHHHHHHHHTSC--------S
T ss_pred cccccccc--cCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-hhHHHHHHHHHhhcC--------C
Confidence 99986541 122111 011111 1444 48999999998889999998864 111111111112211 3
Q ss_pred CCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC------eEEeeCCCC--------------------
Q 010897 319 SKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR------FEILSKDVG-------------------- 372 (498)
Q Consensus 319 sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~------~~~~~~~~~-------------------- 372 (498)
|.+...+.++-++++.+....-.++.++..++++++++.|+++++ |.++.++.-
T Consensus 400 Spsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~ 479 (715)
T 3n75_A 400 SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNI 479 (715)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTC
T ss_pred CchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccccc
Confidence 444455566667777766422255789999999999999988753 555543210
Q ss_pred --------ccEEEEEecCC--------CCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHH
Q 010897 373 --------VPLVAFSLKDS--------SAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISH 436 (498)
Q Consensus 373 --------~~~v~f~~~~~--------~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~ 436 (498)
..=+.+..++- .+++...+.+.|+++|+.+--. +...+=+-++...|.+++++|+++
T Consensus 480 ~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~-------d~~~vl~l~s~g~~~~~~~~L~~a 552 (715)
T 3n75_A 480 DNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKT-------GPYNLLFLFSIGIDKTKALSLLRA 552 (715)
T ss_dssp CSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEE-------ETTEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEec-------CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 00122233221 1567789999999998764211 112233334445688899999999
Q ss_pred HHHHHHHHH
Q 010897 437 IEEVLKEIE 445 (498)
Q Consensus 437 l~~~l~~l~ 445 (498)
|.++-+..+
T Consensus 553 L~~~~~~~~ 561 (715)
T 3n75_A 553 LTDFKRAFD 561 (715)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 988766544
No 208
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.82 E-value=3.8e-18 Score=175.66 Aligned_cols=331 Identities=14% Similarity=-0.003 Sum_probs=200.4
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+.........+ ......++.+.++++++.+. ..+.+|+||++|+..++.+++..
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~ea~~~a~~~~~~~------- 125 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKLDHLFSEM--LSRPVVDLATRLANITPPGL-----DRALLLSTGAESNEAAIRMAKLV------- 125 (433)
T ss_dssp TCHHHHHHHHHHHHHCCCCCTTC--CCHHHHHHHHHHHHHSCTTC-----CEEEEESCHHHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHhCccccccc--CCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHh-------
Confidence 36888888888876532211222 23455677788999988654 23999999999999999876531
Q ss_pred cCCCCCCcEEEEcCCch-hHHHHHHHHcC-----------CeeEEEEecCC-----------ccccCHHHHHHHhhh---
Q 010897 148 QGKPYDKPNIVTGANVQ-VCWEKFARYFE-----------VELKEVKLEEG-----------YYVMNPVKAVELVDE--- 201 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h-~~~~~~~~~~g-----------~~~~~v~~~~~-----------~~~~d~~~L~~~i~~--- 201 (498)
. ++++|++.+++| .....+....+ .+++.+++... .+.+|+++|++++++
T Consensus 126 ~----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 201 (433)
T 1zod_A 126 T----GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 201 (433)
T ss_dssp H----TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCC
T ss_pred h----CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCC
Confidence 0 135677777654 43333332211 24555654321 013579999999973
Q ss_pred -CCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcC
Q 010897 202 -NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSG 275 (498)
Q Consensus 202 -~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~ 275 (498)
++++|++...++++|.+.+ +++|.++|++| |+++++|++|+++.. .......+ ++. ..|.++++
T Consensus 202 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~g~--~g~~~~~~~~~~-~~di~s~s- 271 (433)
T 1zod_A 202 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR------GMLLILDEAQTGVGR--TGTMFACQRDGV-TPDILTLS- 271 (433)
T ss_dssp SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCSEEEEC-
T ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--CchHhHHhhcCC-CCCEEEec-
Confidence 4455554433477897766 99999999999 999999999997631 11111111 121 24555443
Q ss_pred CccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 010897 276 HKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALR 355 (498)
Q Consensus 276 hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~ 355 (498)
|.+.++.++|+++.++ +.. +.+.. ..+. ...+ ++-+.....+..++++.+..++ ..++..++++++.
T Consensus 272 -K~~~~G~~ig~~~~~~-~~~-~~~~~-~~~~----~~~t--~~~~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~ 338 (433)
T 1zod_A 272 -KTLGAGLPLAAIVTSA-AIE-ERAHE-LGYL----FYTT--HVSDPLPAAVGLRVLDVVQRDG---LVARANVMGDRLR 338 (433)
T ss_dssp -HHHHTTSSCEEEEECH-HHH-HHHHH-TTCC----CCCT--TTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred -ccccCCCCeeEEEEhH-HHH-Hhhcc-CCCC----CCCC--CCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHH
Confidence 7766678899998764 221 22111 0111 0011 2222334444455555544433 4566666777777
Q ss_pred HHHhcC----CCeEEeeCCCCccEEEEEecCC------CCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCC
Q 010897 356 EGLEKT----GRFEILSKDVGVPLVAFSLKDS------SAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDF 425 (498)
Q Consensus 356 ~~L~~~----~~~~~~~~~~~~~~v~f~~~~~------~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~ 425 (498)
+.|+++ +.+..+.+ ..+++.+.+++. +..+..++.++|.++|+.+...... ....++|+++....
T Consensus 339 ~~l~~l~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~~~lRi~~~~~~ 413 (433)
T 1zod_A 339 RGLLDLMERFDCIGDVRG--RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLP---GMGGVFRIAPPLTV 413 (433)
T ss_dssp HHHHHHHHHCTTEEEEEE--ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCT---TSCCEEEECCCTTC
T ss_pred HHHHHHHHhCCCeEEEEE--EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCC---CCCCEEEEECCcCC
Confidence 777653 53333322 356777776421 0123678999999999887543211 12367999987778
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 010897 426 SRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 426 t~~~~~~l~~~l~~~l~~l 444 (498)
++++++++++.|+++++++
T Consensus 414 t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 414 SEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888654
No 209
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.82 E-value=2.5e-18 Score=178.20 Aligned_cols=330 Identities=10% Similarity=-0.001 Sum_probs=197.0
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+..... +.......+...++.++|+++++.+.. ..+.+|+||+||+..|++.++..
T Consensus 81 ~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~~----~~v~~~~sGseA~~~alk~a~~~------- 148 (453)
T 4ffc_A 81 SHPAVAAAIADQATHFTH-TCFMVTPYEQYVQVAELLNALTPGDHD----KRTALFNSGAEAVENAIKVARLA------- 148 (453)
T ss_dssp TCHHHHHHHHHHHHHCSC-CTTTTSCCHHHHHHHHHHHHHSSCSSC----EEEEEESSHHHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHhccc-cccCcCCCHHHHHHHHHHHHhCCCCCC----cEEEEeCcHHHHHHHHHHHHHHh-------
Confidence 368888988888776432 222223445666788889999874321 24999999999999999877642
Q ss_pred cCCCCCCcEEEEcCCchh-HHHHHHHHcCC-------------eeEEEEecC---CccccC--------HHHHHHHhhhC
Q 010897 148 QGKPYDKPNIVTGANVQV-CWEKFARYFEV-------------ELKEVKLEE---GYYVMN--------PVKAVELVDEN 202 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~-~~~~~~~~~g~-------------~~~~v~~~~---~~~~~d--------~~~L~~~i~~~ 202 (498)
.| +++|++.+++|. ....+....+. ++..+|... +.+.++ ++.|++.+..+
T Consensus 149 ~g----~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~ 224 (453)
T 4ffc_A 149 TG----RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQ 224 (453)
T ss_dssp HC----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred cC----CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCC
Confidence 11 356776665554 33333332221 456666641 111122 46677777655
Q ss_pred CeEEEEeeccCCcc-cccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCC
Q 010897 203 TICVAAILGSTLTG-EFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGH 276 (498)
Q Consensus 203 t~~v~~~~~~t~tG-~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~h 276 (498)
+.+++++.|++++| .+.+ +++|.++|++| |+++++|++|.++.. .......+ ++. ..|.++++
T Consensus 225 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~g~~~a~~~~~~-~pdi~t~s-- 293 (453)
T 4ffc_A 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN------GVVFIADEVQTGFAR--TGAWFASEHEGI-VPDIVTMA-- 293 (453)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCSEEEEC--
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--ccccchhhhcCC-CcchHhhh--
Confidence 66677777777764 5545 99999999999 999999999987631 11111111 121 24566554
Q ss_pred ccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 010897 277 KYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALRE 356 (498)
Q Consensus 277 K~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~ 356 (498)
|.+.++.++|+++.+.. .. +. +.......+ ++-+.....+..++++.+..+. ..++..++.+++++
T Consensus 294 K~~~~G~~~G~~~~~~~-i~-~~-------~~~~~~~~t--~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~ 359 (453)
T 4ffc_A 294 KGIAGGMPLSAVTGRAE-LM-DA-------VYAGGLGGT--YGGNPVTCAAAVAALGVMRELD---LPARARAIEASVTS 359 (453)
T ss_dssp GGGGTTSSCEEEEEEHH-HH-TT-------SCTTSSCCS--SSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred hhhcCCcCeEEEEECHH-HH-hh-------hcccCcCCC--CCcCHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHH
Confidence 87777788999987542 11 11 110001111 2222233334444454443333 33444444444444
Q ss_pred HH----hcCCCeEEeeCCCCccEEEEEecC-----CCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCH
Q 010897 357 GL----EKTGRFEILSKDVGVPLVAFSLKD-----SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSR 427 (498)
Q Consensus 357 ~L----~~~~~~~~~~~~~~~~~v~f~~~~-----~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~ 427 (498)
.| .+.+.+..+.. ...++.|.+.. ++..+..++.+.|.++|+.+.... ....++|+++....++
T Consensus 360 ~l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~~~~~~t~ 432 (453)
T 4ffc_A 360 RLSALAEEVDIIGEVRG--RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG-----TFGNVIRLLPPLVIGD 432 (453)
T ss_dssp HHHHHHHHCSSEEEEEE--ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC-----TTSCEEEECCCTTCCH
T ss_pred HHHHHHhhCCCeEEEEe--eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC-----CCCCEEEEECCCCCCH
Confidence 44 45564444332 35677777642 111235688899999998874421 1235799998888899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010897 428 SLVERLISHIEEVLKEIE 445 (498)
Q Consensus 428 ~~~~~l~~~l~~~l~~l~ 445 (498)
++++++++.|+++++++.
T Consensus 433 e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 433 DLLDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987653
No 210
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.82 E-value=1.5e-18 Score=179.64 Aligned_cols=336 Identities=13% Similarity=0.013 Sum_probs=201.5
Q ss_pred ChHHHH-H-HHHH---HhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHH
Q 010897 68 MEPECD-K-LVMA---SINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (498)
Q Consensus 68 ~~~~~~-~-~l~~---~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~ 142 (498)
.+|.+. + ++.+ .+......... ...+...++.+.++++++... ...+.+|+||++|+..++.+++....
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~la~~~~~~~----~~~v~~~~~gseA~~~aik~a~~~~~ 144 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALNKPSNSD--VYSVAMARFVETFARVLGDPA----LPHLFFVEGGALAVENALKAAFDWKS 144 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTCCCCTTT--CCCHHHHHHHHHHHHHHCCTT----CCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCcc--cCCHHHHHHHHHHHHhcCCCC----CCEEEEeCchHHHHHHHHHHHHHHhc
Confidence 368888 8 8888 66554321111 233445567777888887211 12499999999999999987653221
Q ss_pred HHHHhcCCCCC-CcEEEEcCCchhH-HHHHHHH--------cCC-----eeEEEEecC--Cc-------cccCHHHHHHH
Q 010897 143 QKRKEQGKPYD-KPNIVTGANVQVC-WEKFARY--------FEV-----ELKEVKLEE--GY-------YVMNPVKAVEL 198 (498)
Q Consensus 143 ~~~~~~g~~~~-~~~Iv~s~~~h~~-~~~~~~~--------~g~-----~~~~v~~~~--~~-------~~~d~~~L~~~ 198 (498)
......|.+.. +++||+.+++|.. ...+... .+. ++..+|.++ .. ...|+++|+++
T Consensus 145 ~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~ 224 (449)
T 2cjg_A 145 RHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAA 224 (449)
T ss_dssp HHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHH
Confidence 11011122211 4578887765542 2211111 222 456666543 11 13577789999
Q ss_pred hh---hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeE
Q 010897 199 VD---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKS 270 (498)
Q Consensus 199 i~---~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~ds 270 (498)
|+ +++++|++...++++|.+.+ +++|.++|++| |+++++|++|+++.. ........ +++ ..|.
T Consensus 225 i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~g~--~g~~~~~~~~~~-~~di 295 (449)
T 2cjg_A 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF------DALLIFDEVQTGCGL--TGTAWAYQQLDV-APDI 295 (449)
T ss_dssp HHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCSE
T ss_pred HHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC------CcEEEEeccccCCCc--cCcceeecccCC-CceE
Confidence 95 56777776666688998777 99999999999 999999999997531 11100111 122 2566
Q ss_pred EEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 010897 271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGN 350 (498)
Q Consensus 271 i~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~ 350 (498)
++++ |++ .+|+++.++ +.. +.+. ..++.......+ ++.+.....+..++++.+..+ +..++..++
T Consensus 296 ~t~s--K~l----~iG~~~~~~-~~~-~~l~--~~~~~~~~~~~t--~~~n~~~~~aa~aal~~~~~~---~~~~~~~~~ 360 (449)
T 2cjg_A 296 VAFG--KKT----QVCGVMAGR-RVD-EVAD--NVFAVPSRLNST--WGGNLTDMVRARRILEVIEAE---GLFERAVQH 360 (449)
T ss_dssp EEEC--GGG----SSEEEEECG-GGG-GSTT--CTTTSTTSSCCS--SSSCHHHHHHHHHHHHHHHHH---THHHHHHHH
T ss_pred EEec--Ccc----cEEEEEECH-HHh-hhhh--hcccCCcccccC--CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHH
Confidence 6554 876 478888754 222 2110 001111111111 222233444455556544333 355677778
Q ss_pred HHHHHHHHhcC----CC-eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCC
Q 010897 351 ARALREGLEKT----GR-FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDF 425 (498)
Q Consensus 351 a~~l~~~L~~~----~~-~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~ 425 (498)
++++.+.|+++ +. +..+.+ ..+++.|.+++ ..+..+++++|.++|+.+... +..++|+++...+
T Consensus 361 ~~~l~~~L~~l~~~~~~~~~~~~~--~g~~~~~~~~~--~~~~~~~~~~l~~~Gv~v~~~-------g~~~iRi~~~~~~ 429 (449)
T 2cjg_A 361 GKYLRARLDELAADFPAVVLDPRG--RGLMCAFSLPT--TADRDELIRQLWQRAVIVLPA-------GADTVRFRPPLTV 429 (449)
T ss_dssp HHHHHHHHHHHHHHSTTTSEEEEE--ETTEEEEECSS--HHHHHHHHHHHHHTTEECEEE-------TTTEEEECCCTTC
T ss_pred HHHHHHHHHHHHhhCCCceeeEee--ccEEEEEEECC--hHHHHHHHHHHHHCCeEEecC-------CCCEEEEECCCCC
Confidence 88888888753 43 433332 45677787743 123568999999999876542 2367999987788
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 010897 426 SRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 426 t~~~~~~l~~~l~~~l~~l 444 (498)
|+++++++++.|+++++.+
T Consensus 430 t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 430 STAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988653
No 211
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.82 E-value=3.7e-18 Score=177.75 Aligned_cols=349 Identities=13% Similarity=0.057 Sum_probs=209.8
Q ss_pred cCCCCCcccccc---cC-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 53 DGNPRLNLASFV---TT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 53 ~~~p~~~~~~~~---~~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
+|+..+.+.+.. +. +.+|.+.+++.+.++.....+.......+...++.++|+++++.+. ..+.+++||+|
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~-----~~v~~~~sGse 127 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL-----NHVFFAGGGSE 127 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE-----EEEEEESSHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHH
Confidence 455545544431 11 2468899999888876443222223344566678888999886543 24999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCC------------eeEEEEecCCccc----cC-
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV------------ELKEVKLEEGYYV----MN- 191 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~------------~~~~v~~~~~~~~----~d- 191 (498)
|+..|+++++..+.. .|.+ ++.+||+.+++|..+...+..++. ++..++... .|. +|
T Consensus 128 A~~~aik~a~~~~~~----~g~~-~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~~~~~ 201 (472)
T 3hmu_A 128 ANDTNIRMVRTYWQN----KGQP-EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPN-WWAEGGDMDP 201 (472)
T ss_dssp HHHHHHHHHHHHHHH----TTCT-TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCC-HHHHCTTCCH
T ss_pred HHHHHHHHHHHHHHh----cCCC-CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCc-cccCCcccCH
Confidence 999999998764321 1221 245677666555433333322222 355565422 111 33
Q ss_pred -------HHHHHHHhh----hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccC
Q 010897 192 -------PVKAVELVD----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256 (498)
Q Consensus 192 -------~~~L~~~i~----~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~ 256 (498)
+++|+++++ +++.+|++...++++|.+.+ +++|.++|+++ |+++++|++|.||.. ..
T Consensus 202 ~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr--~G 273 (472)
T 3hmu_A 202 EEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY------DILLIADEVICGFGR--TG 273 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEccccCCcc--cC
Confidence 788888886 34566666666666788777 99999999999 999999999988631 11
Q ss_pred CCCccc-cCCCCeeEEEEcCCccCCCC-CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHH
Q 010897 257 PDLEWD-FRLPLVKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR 334 (498)
Q Consensus 257 ~~~~~~-~~~~~~dsi~~s~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~ 334 (498)
...... +++ ..|.++++ |.+.++ .++|+++.+.+ . .+.+ .. +......+ ++-+.....+..++|+.
T Consensus 274 ~~~a~~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~~-i-~~~~--~~---~~~~~~~t--~~~np~a~aAa~aaL~~ 341 (472)
T 3hmu_A 274 NWFGTQTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCDE-V-AHVI--GK---DEFNHGYT--YSGHPVAAAVALENLRI 341 (472)
T ss_dssp SSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHH-H-HHHH--TT---SCBCCCCT--TTTCHHHHHHHHHHHHH
T ss_pred ccchhHHhCC-CCceeeec--hhhhcCCcceEEEEECHH-H-HHhc--cc---CCccccCC--CCCCHHHHHHHHHHHHH
Confidence 111111 122 25666665 776555 68899887542 1 1211 10 00001111 22222334444455544
Q ss_pred hcHHHHHHHHHHHH-HHHHHHHHHHhcC---CCeEEeeCCCCccEEEEEecCCCC----------CCHHHHHHHHHhcCc
Q 010897 335 LGFEGYKNIMENCM-GNARALREGLEKT---GRFEILSKDVGVPLVAFSLKDSSA----------HTVFEISEGLRKFGW 400 (498)
Q Consensus 335 lg~~g~~~~~~~~~-~~a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~----------~~~~~l~~~L~~~G~ 400 (498)
+..+ +..++.. ++.+++++.|+++ +.+..+.. ...++.|.+..... .....+++.|.++|+
T Consensus 342 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 416 (472)
T 3hmu_A 342 LEEE---NILDHVRNVAAPYLKEKWEALTDHPLVGEAKI--VGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNL 416 (472)
T ss_dssp HHHT---THHHHHHHTHHHHHHHHHHGGGGSTTEEEEEE--ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTB
T ss_pred HHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe--cCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCc
Confidence 4333 4455566 6666776666554 43443332 45677777743210 015678899999998
Q ss_pred EeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 401 IVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 401 ~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
++... + .++|++.....|.++++++++.|+++++++.
T Consensus 417 ~v~~~-------g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 417 IMRHV-------G-DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp CCEEE-------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 87542 1 6799997777899999999999999987764
No 212
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.82 E-value=1.3e-18 Score=177.31 Aligned_cols=284 Identities=17% Similarity=0.075 Sum_probs=185.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHH-----HH
Q 010897 98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-----AR 172 (498)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~-----~~ 172 (498)
.++.+.+++++|.+. .+++++|++|+.. +.++.+ .+++|+++.+.|...... ++
T Consensus 70 ~~l~~~la~l~g~~~-------~~~~~sG~~Ai~~-~~~l~~-------------~gd~Vi~~~~~y~~~~~~~~~~~~~ 128 (400)
T 3nmy_A 70 FAYERCVAALEGGTR-------AFAFASGMAATST-VMELLD-------------AGSHVVAMDDLYGGTFRLFERVRRR 128 (400)
T ss_dssp HHHHHHHHHHHTCSE-------EEEESSHHHHHHH-HHTTSC-------------TTCEEEEESSCCHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhCCCC-------EEEecCHHHHHHH-HHHHcC-------------CCCEEEEeCCCchHHHHHHHHhhHh
Confidence 355566889998763 7778888999876 333322 146899999999854444 33
Q ss_pred HcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccc
Q 010897 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA 252 (498)
Q Consensus 173 ~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~ 252 (498)
..|++++.++.+ |+++|+++++++|++|++..++||+|.+.|+++|.++|+++ |+++++|++|+.+..
T Consensus 129 ~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~------g~~livDe~~~~~~~ 196 (400)
T 3nmy_A 129 TAGLDFSFVDLT------DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKH------GLLTVVDNTFASPML 196 (400)
T ss_dssp HHCCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHHH
T ss_pred hcCeEEEEECCC------CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 469988888753 79999999999999999999999999999999999999999 999999999986532
Q ss_pred cccCCCCccccCCCCeeEEEEcCCccCCCCC-CeEE--EEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHH
Q 010897 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGW--VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY 329 (498)
Q Consensus 253 ~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~-g~g~--~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~ 329 (498)
..+ . + .++|.++.|.+|++.++. .+|. ++.++++. .+.+.....+.+. + ...+..|
T Consensus 197 --~~~-~--~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~-~~~l~~~~~~~g~---------~---~~~~~a~ 255 (400)
T 3nmy_A 197 --QRP-L--S---LGADLVVHSATKYLNGHSDMVGGIAVVGDNAEL-AEQMAFLQNSIGG---------V---QGPFDSF 255 (400)
T ss_dssp --CCG-G--G---GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHH-HHHHHHHHHHHCC---------B---CCHHHHH
T ss_pred --CCh-h--h---cCCcEEEecCccccCCCCCcceeEEEEeCCHHH-HHHHHHHHHhcCC---------C---CCHHHHH
Confidence 111 1 1 158999999999998763 3443 44333322 1111111111111 1 1223344
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC----------------CccEEEEEecCCCCCCHHHHHH
Q 010897 330 YQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----------------GVPLVAFSLKDSSAHTVFEISE 393 (498)
Q Consensus 330 ~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~~~~~~~~~l~~ 393 (498)
.+++. .+.+..++++..++++++.+.|++.|.+.-+..+. ...+++|.+++. .....++.+
T Consensus 256 ~~l~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~-~~~~~~~~~ 332 (400)
T 3nmy_A 256 LALRG--LKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG-FDAAKRFCE 332 (400)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHH
T ss_pred HHHHh--HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc-HHHHHHHHH
Confidence 44443 34567788889999999999999998776442221 246899999541 112345555
Q ss_pred HHHhcCcEeeee------cCCCC--------------CCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 394 GLRKFGWIVPAY------TMPAN--------------AENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 394 ~L~~~G~~v~~~------~~~~~--------------~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
.|.-.++.++-. ..|.. .....++|++++. |+++.++++|+++++
T Consensus 333 ~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 333 KTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI----EDLGDLRGDLERALV 397 (400)
T ss_dssp HCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHC
T ss_pred cCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 554433221100 01100 1134689999974 567777888888775
No 213
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.81 E-value=7e-19 Score=178.92 Aligned_cols=294 Identities=12% Similarity=0.067 Sum_probs=188.5
Q ss_pred CCcCCcch-----HHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCc----E
Q 010897 86 DMDEYPVT-----TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP----N 156 (498)
Q Consensus 86 ~~~~~~~~-----~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~----~ 156 (498)
.|....+. .++++.+.+++. ..|.+.... ..+++|+|+++++.+++.++.++ ++ +
T Consensus 58 ~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~--~~i~~t~G~~~al~~~~~~l~~~-------------Gd~~~~~ 121 (391)
T 3bwn_A 58 YFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATED--RYIVVGTGSTQLCQAAVHALSSL-------------ARSQPVS 121 (391)
T ss_dssp SCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSS--SEEEEEEHHHHHHHHHHHHHHHT-------------SSSSSEE
T ss_pred cCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCC--CeEEEeCChHHHHHHHHHHhcCC-------------CCCCcce
Confidence 34444455 788888877776 456553221 24899999999999998887653 35 8
Q ss_pred EEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccC
Q 010897 157 IVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETG 236 (498)
Q Consensus 157 Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~ 236 (498)
|++++++|..+...++..|++++.++++.+++ + .+++++|++++|+||||.+.+ +|++ ++++
T Consensus 122 Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l--~--------~~~~k~v~l~~p~NPtG~~~~--~l~~--~~~~---- 183 (391)
T 3bwn_A 122 VVAAAPFYSTYVEETTYVRSGMYKWEGDAWGF--D--------KKGPYIELVTSPNNPDGTIRE--TVVN--RPDD---- 183 (391)
T ss_dssp EEECSSCCTHHHHHHHTTCBTTEEEEEESTTC--C--------CCSCEEEEEESSCTTTCCCCC--CCC-----------
T ss_pred EEEcCCCchhHHHHHHHcCCeEEEecCCHHHc--C--------CCCCEEEEECCCCCCCchhHH--HHHH--Hhhc----
Confidence 99999999999999999999999999876533 2 257899999999999999986 4433 2251
Q ss_pred CCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccC-CCCCCeEEEEEeCCCCCCcccccccCccCCCCCCcc
Q 010897 237 WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315 (498)
Q Consensus 237 ~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l-~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~ 315 (498)
.+++|++|++|+.. + . +.+. .....+++..|.+|.+ +++.++||++..+++.+ ..+.....+.
T Consensus 184 ~~~~ii~De~y~~~--~-~-~~l~---~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~-~~l~~~~~~~-------- 247 (391)
T 3bwn_A 184 DEAKVIHDFAYYWP--H-Y-TPIT---RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVA-KKMVEYIIVN-------- 247 (391)
T ss_dssp CCCEEEEECTTCST--T-T-SCCC---CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHH-HHHHHHHHHH--------
T ss_pred CCCEEEEeCCCCCC--C-C-Cccc---cCCCCeEEEEechhhcCCCccceEEEEecCHHHH-HHHHHHhccc--------
Confidence 04999999999741 1 1 1111 1123567778899976 46677899987443221 1111100000
Q ss_pred ccCCCchHHHHHHHHHHHHhc------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC------------
Q 010897 316 LNFSKGSSQIIAQYYQFIRLG------------FEGYKNIMENCMGNARALREGLEKTGRFEILSKDV------------ 371 (498)
Q Consensus 316 l~~sr~~~~~~a~~~~l~~lg------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~------------ 371 (498)
..+- ..+.|.++...+. .+.+++..++..++++++.+.|++++++++..+..
T Consensus 248 -~~~~---~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~ 323 (391)
T 3bwn_A 248 -SIGV---SKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLES 323 (391)
T ss_dssp -HSSC---CHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECC
T ss_pred -ccCC---CHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCC
Confidence 0111 2233443333332 23466777888889999999999987777653211
Q ss_pred CccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 372 GVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 372 ~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
...++.+.+++. ..+.+.|.++|+.+....... .+..++|+++.. +.++++++++.|+++++
T Consensus 324 ~g~~~~~~~~~~-----~~~~~~l~~~gV~v~pg~~fg--~~~~~iRis~~~--~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 324 YPAFAWLGTKEE-----TDLVSELRRHKVMSRAGERCG--SDKKHVRVSMLS--REDVFNVFLERLANMKL 385 (391)
T ss_dssp CCSEEEEEESSS-----CCHHHHHHHTTEECEEGGGGT--CCTTEEEEESCS--CHHHHHHHHHHHHSCC-
T ss_pred cceEEEecCCcH-----HHHHHHHHHCCEEEccCCCCC--CCCCEEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 112566677431 256677888999876533221 134679999973 67778877777766553
No 214
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.81 E-value=1.4e-17 Score=172.54 Aligned_cols=326 Identities=15% Similarity=0.076 Sum_probs=191.8
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+..... +.......+...++.++|+++++.+.. ..+.+|+||+||+..|++.++..
T Consensus 78 ~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~~----~~v~~~~sGseA~~~Alk~a~~~------- 145 (451)
T 3oks_A 78 SAPKVVEAVRSQVGDFTH-TCFMVTPYEGYVAVCEQLNRLTPVRGD----KRSALFNSGSEAVENAVKIARSH------- 145 (451)
T ss_dssp TCHHHHHHHHHHHTTCSC-CTTTTSCCHHHHHHHHHHHHHSSCCSS----EEEEEESSHHHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHhccc-ccCCccCCHHHHHHHHHHHHhCCcCCC----CEEEEeCcHHHHHHHHHHHHHHh-------
Confidence 368899999888876432 222223345666788889998864321 24999999999999999887652
Q ss_pred cCCCCCCcEEEEcCCchh-HHHHHHHHcC-------------CeeEEEEecCCccc-------------cCHHHHHHHhh
Q 010897 148 QGKPYDKPNIVTGANVQV-CWEKFARYFE-------------VELKEVKLEEGYYV-------------MNPVKAVELVD 200 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~-~~~~~~~~~g-------------~~~~~v~~~~~~~~-------------~d~~~L~~~i~ 200 (498)
.| +++|++.+.+|. ....+....+ .++..+|.... ++ .+++.+++.+.
T Consensus 146 ~g----~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~l~ 220 (451)
T 3oks_A 146 TH----KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYP-FRDAEFGKELATDGELAAKRAITVID 220 (451)
T ss_dssp HC----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCH-HHHGGGCTTTTTCHHHHHHHHHHHHH
T ss_pred cC----CCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcc-ccccccccccchhhHHHHHHHHHHHH
Confidence 11 356776665544 3332222222 14666765421 11 13444445544
Q ss_pred ----hCCeEEEEeeccCCc-ccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeE
Q 010897 201 ----ENTICVAAILGSTLT-GEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKS 270 (498)
Q Consensus 201 ----~~t~~v~~~~~~t~t-G~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~ds 270 (498)
.++.+++++.|++++ |.+.+ +++|.++|++| |+++++|++|.++.. .......+ ++. ..|.
T Consensus 221 ~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~--~g~~~~~~~~~~-~pdi 291 (451)
T 3oks_A 221 KQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN------DVVFIADEVQTGFAR--TGAMFACEHEGI-DPDL 291 (451)
T ss_dssp HHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSE
T ss_pred hhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--cccchhhhhcCC-CCCe
Confidence 345556666666665 55555 99999999999 999999999987631 11111111 121 2466
Q ss_pred EEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 010897 271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGN 350 (498)
Q Consensus 271 i~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~ 350 (498)
++++ |.+.++.++|+++.+.. .. +.+ .......+ ++-+.....+..++++.+..+. ..++..++
T Consensus 292 ~t~s--K~l~~G~~iG~v~~~~~-~~-~~~-------~~~~~~~t--~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~ 355 (451)
T 3oks_A 292 IVTA--KGIAGGLPLSAVTGRAE-IM-DSP-------HVSGLGGT--YGGNPIACAAALATIETIESEG---LVARAQQI 355 (451)
T ss_dssp EEEC--GGGGTTSSCEEEEEEHH-HH-TCS-------CTTSBCCS--SSSCHHHHHHHHHHHHHHHHTT---HHHHHHHH
T ss_pred eeeh--hhhhCCcceEEEEECHH-HH-hhh-------cCCCcCCC--CCCCHHHHHHHHHHHHHHhhhh---HHHHHHHH
Confidence 6554 88877788999887542 11 111 10001111 2222233333444444443333 34444445
Q ss_pred HHHHHHHH----hcCCCeEEeeCCCCccEEEEEecC-----CCCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee
Q 010897 351 ARALREGL----EKTGRFEILSKDVGVPLVAFSLKD-----SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421 (498)
Q Consensus 351 a~~l~~~L----~~~~~~~~~~~~~~~~~v~f~~~~-----~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v 421 (498)
.+++++.| .+.+.+..+.. ...++.+.+.. +...+..++.+.|.++|+.+.... ....++|+++
T Consensus 356 ~~~l~~~L~~~~~~~~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~iRi~~ 428 (451)
T 3oks_A 356 EKIMKDRLGRLQAEDDRIGDVRG--RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG-----TYGNVVRFLP 428 (451)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEE--ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC-----TTSCEEEECC
T ss_pred HHHHHHHHHHHHhhCCCeEEEEE--eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC-----CCCCEEEEEC
Confidence 55555544 44554443332 34577777632 111235688999999998875421 1235799998
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 010897 422 REDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 422 ~~~~t~~~~~~l~~~l~~~l~ 442 (498)
....|+++++++++.|+++++
T Consensus 429 ~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 429 PLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 888899999999999998875
No 215
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.81 E-value=2.9e-18 Score=181.42 Aligned_cols=355 Identities=11% Similarity=0.019 Sum_probs=208.6
Q ss_pred cccCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHH-HHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHH
Q 010897 63 FVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNR-CVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (498)
Q Consensus 63 ~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~-~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~ 141 (498)
..+..+++.+.+.+.+.+.. ..|...++...+.++ +..++.+..+..........+++|+|+++++.+++.++..+
T Consensus 112 g~~~~~~~~~~~al~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~- 188 (546)
T 2zy4_A 112 DQLGLDPAAFLHEMVDGILG--CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLN- 188 (546)
T ss_dssp HTSCCCHHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCChHHHHHHHHhhhc--CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhh-
Confidence 33444556666666665543 223333345556555 44455555443110000124899999999999888774211
Q ss_pred HHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHc--CCeeEEEEecC-CccccCHHHHHHHhhhCCeEEEEeeccCCcccc
Q 010897 142 QQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF--EVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEF 218 (498)
Q Consensus 142 ~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~--g~~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~ 218 (498)
.....++.|++++++|..+..++... |++++.+++++ ++|.+|+++|+++++.++++|++++|+||||.+
T Consensus 189 -------~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~ 261 (546)
T 2zy4_A 189 -------GLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVK 261 (546)
T ss_dssp -------TSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBC
T ss_pred -------hcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCCCcc
Confidence 00012468999999999999987765 57788888864 347899999999888889999999999999999
Q ss_pred cC---HHHHHHHH--HHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccC-CCCCCeEEEEEeC
Q 010897 219 ED---VKLLHDLL--TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-LVYAGVGWVVWRT 292 (498)
Q Consensus 219 ~~---l~~I~~la--~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l-~~p~g~g~~~~~~ 292 (498)
.+ +++|.++| +++ |++|++|++|+.+... .+... .. .+..+.+..|.+|++ .++.++||++..+
T Consensus 262 ~~~~~l~~l~~~a~~~~~------~~~ii~De~y~~~~~~--~~s~~-~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 331 (546)
T 2zy4_A 262 MDQRSLERVRNIVAEHRP------DLMILTDDVYGTFADD--FQSLF-AI-CPENTLLVYSFSKYFGATGWRLGVVAAHQ 331 (546)
T ss_dssp CCHHHHHHHHHHHHHTCT------TCEEEEECTTGGGSTT--CCCHH-HH-CGGGEEEEEESTTTTTCGGGCEEEEEEES
T ss_pred CCHHHHHHHHHHHHhccC------CcEEEEeCcchhhccc--CcCHH-Hh-CCCCEEEEEeCccccCCCCcceEEEEECC
Confidence 76 55677887 677 9999999999987521 11110 11 123567778899987 4677899999876
Q ss_pred CCCCCccccc----------ccCccC------------------CCCCCccccCCCchHHHHHHHHHH-HHhc--HHHHH
Q 010897 293 KDDLPDELVF----------HINYLG------------------SDQPTFTLNFSKGSSQIIAQYYQF-IRLG--FEGYK 341 (498)
Q Consensus 293 ~~~l~~~~~~----------~~~yl~------------------~~~~~~~l~~sr~~~~~~a~~~~l-~~lg--~~g~~ 341 (498)
.+.+ +.+.. ...|.. .....+...+.....+.....+++ ..+. ....+
T Consensus 332 ~~l~-~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~ 410 (546)
T 2zy4_A 332 QNVF-DLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKH 410 (546)
T ss_dssp SCHH-HHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHH-HHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHH
Confidence 4222 11100 000000 000000000111111111111112 2222 22234
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCccE-EEEEecC------CC--------CC-CHHHHHHHHHhcCcEeeee
Q 010897 342 NIMENCMGNARALREGLEKTGRFEILSKDVGVPL-VAFSLKD------SS--------AH-TVFEISEGLRKFGWIVPAY 405 (498)
Q Consensus 342 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~-v~f~~~~------~~--------~~-~~~~l~~~L~~~G~~v~~~ 405 (498)
+..+.+.++++.+.+.|. .+ +.+. ++ ..++ +.++++. .. .. +...+.+.|.++|+.+...
T Consensus 411 ~~r~~~~~r~~~l~~~L~-~~-~~~~-~~-~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG 486 (546)
T 2zy4_A 411 TLKQLIRRRETTLYRELG-MP-PLRD-EN-AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPG 486 (546)
T ss_dssp HHHHHHHHHHHHHHGGGT-SS-CCCC-TT-BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEES
T ss_pred HHHHHHHHHHHHHHHhcC-CC-cccC-CC-CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCc
Confidence 555555667777777775 43 3322 22 4444 4556531 00 01 2344677788999887543
Q ss_pred cCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 406 TMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 406 ~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
.... .+..++|+++. ..+.++++++++.|+++++++.
T Consensus 487 ~~F~--~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 487 RGFG--SNRPSGRASLA-NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp SCTT--CSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccC--CCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 3221 13467999996 3478899999999999887655
No 216
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.80 E-value=1.1e-17 Score=174.48 Aligned_cols=340 Identities=12% Similarity=-0.010 Sum_probs=205.5
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+......+. +....+...++.++++++++.+. ..+.+++||++|+..|+.+++..+..
T Consensus 71 ~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGseA~~~Aik~a~~~~~~---- 140 (476)
T 3i5t_A 71 GRREIVDAMAHQAMVLPYASP-WYMATSPAARLAEKIATLTPGDL-----NRIFFTTGGSTAVDSALRFSEFYNNV---- 140 (476)
T ss_dssp CCHHHHHHHHHHHHHCCCCCT-TTCBCHHHHHHHHHHHTTSSTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccCccc-CccCCHHHHHHHHHHHhcCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence 468899999888876433222 13345666788899999986543 24999999999999999998765432
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHHHHc-CC------------eeEEEEecCC--ccccC--------HHHHHHHhh----
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFARYF-EV------------ELKEVKLEEG--YYVMN--------PVKAVELVD---- 200 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~d--------~~~L~~~i~---- 200 (498)
.|.+ ++++||+.+++|..+...+..+ |. ++..++.... .+..| +++|+++++
T Consensus 141 ~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 219 (476)
T 3i5t_A 141 LGRP-QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP 219 (476)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCCC-CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 2221 2456776665554333333322 21 2334443210 01122 788998886
Q ss_pred hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc--cCCCCeeEEEEc
Q 010897 201 ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD--FRLPLVKSINVS 274 (498)
Q Consensus 201 ~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~--~~~~~~dsi~~s 274 (498)
+++.+|++..+++++|.+.+ +++|.++|+++ |+++++|++|.|+.. ........ +++ ..|.++++
T Consensus 220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~------gillI~DEv~~g~gr--~G~~~~~~~~~~v-~pdi~t~s 290 (476)
T 3i5t_A 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH------DILYISDEVVTGFGR--CGEWFASEKVFGV-VPDIITFA 290 (476)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHTTCC-CCSEEEEC
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--ccCceeeecccCC-Ccchhhhh
Confidence 44667777767777777655 99999999999 999999999988631 11111111 121 24666654
Q ss_pred CCccCCCC-CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 010897 275 GHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA 353 (498)
Q Consensus 275 ~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~ 353 (498)
|.+.++ .++|+++.+.+ . .+.+..............+ ++-+.....+..++|+.+..+ +..++..++.++
T Consensus 291 --K~l~~G~~plg~v~~~~~-i-~~~~~~~~~~~~~~~~~~t--~~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~ 361 (476)
T 3i5t_A 291 --KGVTSGYVPLGGLAISEA-V-LARISGENAKGSWFTNGYT--YSNQPVACAAALANIELMERE---GIVDQAREMADY 361 (476)
T ss_dssp --GGGGTTSSCCEEEEECHH-H-HHTTSGGGCTTCEECCCCT--TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHH
T ss_pred --hhhcCCCcCeEEEEECHH-H-HHHHhcCCcccccccccCC--CCcCHHHHHHHHHHHHHHHhH---HHHHHHHHHHHH
Confidence 777666 78898887542 1 1111110000000000111 222233444445555544333 456667777778
Q ss_pred HHHHHhcC---CCeEEeeCCCCccEEEEEecCCCC----C-----CHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee
Q 010897 354 LREGLEKT---GRFEILSKDVGVPLVAFSLKDSSA----H-----TVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421 (498)
Q Consensus 354 l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~----~-----~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v 421 (498)
+.+.|+++ +.+..+.. ...++.+.+..... + ....+++.|.++|+++... + .++|++.
T Consensus 362 l~~~L~~l~~~~~v~~v~~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------g-~~iRi~p 431 (476)
T 3i5t_A 362 FAAALASLRDLPGVAETRS--VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL-------G-DLCVISP 431 (476)
T ss_dssp HHHHHHTTTTSTTEEEEEE--ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE-------T-TEEEECC
T ss_pred HHHHHHHHhcCCCeEEEEe--cCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec-------C-CEEEEEC
Confidence 87777764 33333322 35577777743210 0 1457889999999887542 2 5799997
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 422 REDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 422 ~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
....|+++++++++.|+++++++.+
T Consensus 432 ~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 432 PLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7778999999999999999977643
No 217
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.80 E-value=5e-17 Score=162.36 Aligned_cols=340 Identities=15% Similarity=0.118 Sum_probs=218.7
Q ss_pred CChHHHHHHHHHHhccCCC-------CCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYV-------DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR 139 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~ 139 (498)
+.++.+.+++-..+..-+. +|..-....++|.-+++...++||++... ..+-+-..+|+.||+.+..++.+
T Consensus 65 ~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~--w~VNVQP~SGs~AN~avy~All~ 142 (490)
T 3ou5_A 65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQ--WGVNVQPYSGSPANLAVYTALLQ 142 (490)
T ss_dssp CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTT--EEEECCCSSHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccc--cCCCCCcCCHHHHHHHHHHHHcC
Confidence 3567788877665544221 12222246789999999999999998520 00134555899999988888876
Q ss_pred HHHHHHHhcCCCCCCcEEEEcCC---chhHHHH-----HHHHcCCe--eEEEEecCCccccCHHHHHHHhhh-CCeEEEE
Q 010897 140 KWQQKRKEQGKPYDKPNIVTGAN---VQVCWEK-----FARYFEVE--LKEVKLEEGYYVMNPVKAVELVDE-NTICVAA 208 (498)
Q Consensus 140 ~~~~~~~~~g~~~~~~~Iv~s~~---~h~~~~~-----~~~~~g~~--~~~v~~~~~~~~~d~~~L~~~i~~-~t~~v~~ 208 (498)
+ ++.|+.-+. .|.+... .....|.- +...+++++++.+|.|++++...+ +|++|++
T Consensus 143 P-------------GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~ 209 (490)
T 3ou5_A 143 P-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp --------------CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEE
T ss_pred C-------------CCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEE
Confidence 5 467776554 4444331 22333433 444556766789999999988765 7887754
Q ss_pred eeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCc-ccccccccCCCCccccCCCCeeEEEEcCCccCCCCCCeEE
Q 010897 209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS-GGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW 287 (498)
Q Consensus 209 ~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~-~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~g~g~ 287 (498)
- .+..-...|++++.++|++. |.++++|.|| +|.++.-..|.+ ++.+|+++.+.||.|.+|.| |+
T Consensus 210 G--~SaY~r~id~~~~reIAd~v------GA~Lm~DmAHiaGLVA~g~~psP-----~~~ADvVTtTTHKTLrGPrG-G~ 275 (490)
T 3ou5_A 210 G--TSAYARLIDYARMREVCDEV------KAHLLADMAHISGLVAAKVIPSP-----FKHADIVTTTTHKTLRGARS-GL 275 (490)
T ss_dssp C--CSSCCSCCCHHHHHHHHHHH------TCEEEEECGGGHHHHHTTSSCCG-----GGTCSEEEEESSSTTCSCSC-EE
T ss_pred C--CccCccccCHHHHHHHHhhc------ccEEEechhhhhhhhcccccCCc-----cccceEEeccccccccCCCc-eE
Confidence 3 33334566899999999999 9999999999 555432222221 24689999999999988775 78
Q ss_pred EEEeCCCCC--C---c----cc--ccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 010897 288 VVWRTKDDL--P---D----EL--VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALRE 356 (498)
Q Consensus 288 ~~~~~~~~l--~---~----~~--~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~ 356 (498)
+++++...- + + .+ .++... ..+++|......+.+...++..-....+++..++..++++.|.+
T Consensus 276 Il~~~~~~~~~~k~~~~~~~~~~kkin~aV------FPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~ 349 (490)
T 3ou5_A 276 IFYRKGVKAVDPKTGREIPYTFEDRINFAV------FPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMAD 349 (490)
T ss_dssp EEEECSEEEECC--CCEEECCCHHHHHHHH------TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccccccccccchhHHHHHHHHHhhc------CccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 887763100 0 0 00 000000 11233444445566666666554455678899999999999999
Q ss_pred HHhcCCCeEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEeeeecCCCC--CCCeeEEEEeecC----CCCHHHH
Q 010897 357 GLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPAN--AENVAVLRVVVRE----DFSRSLV 430 (498)
Q Consensus 357 ~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~--~~~~~~lRv~v~~----~~t~~~~ 430 (498)
.|.+.| |.+++......++.+.+.+ .+++..+..+.|.+.||.+-.-..|.+ ......||+.+-. .+.++|+
T Consensus 350 ~L~~~G-~~vvsGgTdnHlvLvDl~~-~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm 427 (490)
T 3ou5_A 350 ALLERG-YSLVSGGTDNHLVLVDLRP-KGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDF 427 (490)
T ss_dssp HHHHTT-CEEGGGSCSSSEEEEECGG-GTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred HHHhCC-CeeecCCCCceEEEEeccc-cCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHH
Confidence 999987 9999876677899998864 357888899999999998865555543 1223469998643 4566788
Q ss_pred HHHHHHHHHHHHH
Q 010897 431 ERLISHIEEVLKE 443 (498)
Q Consensus 431 ~~l~~~l~~~l~~ 443 (498)
+++.+-|.+++..
T Consensus 428 ~~IA~~I~~~l~~ 440 (490)
T 3ou5_A 428 RRVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8777777777754
No 218
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.80 E-value=1e-17 Score=172.61 Aligned_cols=332 Identities=11% Similarity=0.057 Sum_probs=192.6
Q ss_pred cCCCCCccccccc---C-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 53 DGNPRLNLASFVT---T-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 53 ~~~p~~~~~~~~~---~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
+|+..+++.+... . +.+|.+.+++.+.+...... .++ .....++.++++++++ +. ..+.+|+||++
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~--~~~~~~l~~~la~~~~-~~-----~~v~~~~sGse 122 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY--GTP--TALEVKFAKMLKEAMP-AL-----DKVRFVNSGTE 122 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC--SSC--CHHHHHHHHHHHHHCT-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC--CCC--CHHHHHHHHHHHHhCC-CC-----CEEEEeCchHH
Confidence 4555444444321 1 24688889888887663221 122 2344466677888886 22 24999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHH-HcCCe-------------------eEEEEecCCcc
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR-YFEVE-------------------LKEVKLEEGYY 188 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~-~~g~~-------------------~~~v~~~~~~~ 188 (498)
|+.+++.+++... ++++|++.+++|..+...+. ..|.. +..+|.
T Consensus 123 a~~~ai~~a~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 186 (434)
T 3l44_A 123 AVMTTIRVARAYT-----------GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF----- 186 (434)
T ss_dssp HHHHHHHHHHHHH-----------CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT-----
T ss_pred HHHHHHHHHHHhh-----------CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc-----
Confidence 9999998876521 13578776665543222211 11211 122211
Q ss_pred ccCHHHHHHHhh---hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcc
Q 010897 189 VMNPVKAVELVD---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 261 (498)
Q Consensus 189 ~~d~~~L~~~i~---~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~ 261 (498)
.|+++|+++++ +++.+|++...++++|.+.| +++|.++|++| |++||+|++|.+| . .......
T Consensus 187 -~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~illI~DEv~~g~-~--~g~~~~~ 256 (434)
T 3l44_A 187 -NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEA------GALVIYDEVITAF-R--FMYGGAQ 256 (434)
T ss_dssp -TCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTT-T--SSSSCHH
T ss_pred -ccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccce-e--ccccHHH
Confidence 18999999987 34566666655556677777 99999999999 9999999999886 1 1111111
Q ss_pred c-cCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccc-cCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHH
Q 010897 262 D-FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG 339 (498)
Q Consensus 262 ~-~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~-~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g 339 (498)
+ ++. ..|.++++ |.+.++.++|+++.+. +.. +.+... ..+.++ + ++-+.....+..++++.+..+
T Consensus 257 ~~~~~-~~di~t~s--K~~~~G~~iG~~~~~~-~i~-~~~~~~~~~~~~~---t----~~~~~~a~aaa~aal~~~~~~- 323 (434)
T 3l44_A 257 DLLGV-TPDLTALG--KVIGGGLPIGAYGGKK-EIM-EQVAPLGPAYQAG---T----MAGNPASMASGIACLEVLQQE- 323 (434)
T ss_dssp HHHTC-CCSEEEEE--GGGGTTSSCEEEEECH-HHH-TTBTTTSSBCCCC---T----TTTCHHHHHHHHHHHHHHTST-
T ss_pred HHcCC-CCCeeehh--hhhcCCcCeeeEEEcH-HHH-HhhccCCCcccCC---C----CCcCHHHHHHHHHHHHHHHcc-
Confidence 1 121 24555543 7666788999987543 221 111100 000110 1 222233444444555544333
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCeEEeeCCCCccEEEEEecCCCC-----------CCHHHHHHHHHhcCcEeee
Q 010897 340 YKNIMENCMGNARALREGLEK----TGRFEILSKDVGVPLVAFSLKDSSA-----------HTVFEISEGLRKFGWIVPA 404 (498)
Q Consensus 340 ~~~~~~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~~-----------~~~~~l~~~L~~~G~~v~~ 404 (498)
+..++..++++++.+.|++ .+....+.. ..+++.|.+..... .+..++.+.|.++|+.+..
T Consensus 324 --~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 399 (434)
T 3l44_A 324 --GLYEKLDELGATLEKGILEQAAKHNIDITLNR--LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAP 399 (434)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE--ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCS
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe--eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEee
Confidence 3445555566666666554 442222222 45677777742211 1236788999999987643
Q ss_pred ecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 405 YTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 405 ~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
. +...+|++ ...|+++++++++.|+++++++++
T Consensus 400 ~-------~~~~~rl~--~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 400 S-------KYEAWFLT--TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp S-------TTCCEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------CCCcEEEe--cccCHHHHHHHHHHHHHHHHHHHh
Confidence 2 12347775 457999999999999999987653
No 219
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.80 E-value=1.6e-17 Score=170.74 Aligned_cols=315 Identities=13% Similarity=0.049 Sum_probs=187.4
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.++.... +. + ......++.++++++++ +. ..+++|+||++|+..++..++..
T Consensus 69 ~~p~v~~a~~~~~~~~~~-~~-~--~~~~~~~la~~l~~~~~-~~-----~~v~~~~ggsea~~~al~~a~~~------- 131 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGTS-FG-A--PCALENVLAEMVNDAVP-SI-----EMVRFVNSGTEACMAVLRIMRAY------- 131 (427)
T ss_dssp TCHHHHHHHHHHHTTCSC-CS-S--CCHHHHHHHHHHHHHST-TC-----SEEEEESSHHHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHhCCC-cC-C--CCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHh-------
Confidence 468899999988876432 11 1 34566688888999987 22 24999999999999999766532
Q ss_pred cCCCCCCcEEEEcCCchh-HHHHHHHHcCC-------------------eeEEEEecCCccccCHHHHHHHhhh---CCe
Q 010897 148 QGKPYDKPNIVTGANVQV-CWEKFARYFEV-------------------ELKEVKLEEGYYVMNPVKAVELVDE---NTI 204 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~-~~~~~~~~~g~-------------------~~~~v~~~~~~~~~d~~~L~~~i~~---~t~ 204 (498)
.| +++||+.+++|. .+..+....|. .+..+|. -|+++|++++++ +++
T Consensus 132 ~~----~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~ 201 (427)
T 3fq8_A 132 TG----RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY------NDLEAVKALFAENPGEIA 201 (427)
T ss_dssp HC----CCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET------TCHHHHHHHHHHSTTTEE
T ss_pred hC----CCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC------CCHHHHHHHHHhCCCCEE
Confidence 11 346666554443 22211111111 1222221 189999999986 567
Q ss_pred EEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCccC
Q 010897 205 CVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYG 279 (498)
Q Consensus 205 ~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~l 279 (498)
+|++...++++|.+.| +++|.++|++| |+++++|++|+++ . .......+ ++. ..|.++++ |.+
T Consensus 202 ~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~~~~~~-~~di~t~s--K~~ 269 (427)
T 3fq8_A 202 GVILEPIVGNSGFIVPDAGFLEGLREITLEH------DALLVFDEVITGF-R--IAYGGVQEKFGV-TPDLTTLG--KII 269 (427)
T ss_dssp EEEECSSBCTTSCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTBT-T--TBTTHHHHHTTC-CCSEEEEC--GGG
T ss_pred EEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchhhHhcCC-CCChhhhh--hhh
Confidence 7777777777899988 99999999999 9999999999976 1 11111111 111 24555554 877
Q ss_pred CCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHh
Q 010897 280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (498)
Q Consensus 280 ~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~ 359 (498)
.++.++|+++.+. +.+ +.+.....+.. ..+ ++-+.....+..++++.+..+ +..++..++.+++.+.|+
T Consensus 270 ~~G~~~G~~~~~~-~~~-~~~~~~~~~~~----~~t--~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~~~~~l~ 338 (427)
T 3fq8_A 270 GGGLPVGAYGGKR-EIM-QLVAPAGPMYQ----AGT--LSGNPLAMTAGIKTLELLRQP---GTYEYLDQITKRLSDGLL 338 (427)
T ss_dssp GTTSSCEEEEECH-HHH-TTBTTTSSBCC----CCT--TTTCHHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHH
T ss_pred hCCcceEEEEEcH-HHH-HhhccCCCccc----cCC--CCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH
Confidence 7777799987643 221 11110000000 001 222234444455555544433 344555555566655554
Q ss_pred c----CCCeEEeeCCCCccEEEEEecCCCCC-----------CHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCC
Q 010897 360 K----TGRFEILSKDVGVPLVAFSLKDSSAH-----------TVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVRED 424 (498)
Q Consensus 360 ~----~~~~~~~~~~~~~~~v~f~~~~~~~~-----------~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~ 424 (498)
+ .+ +...... ...++.|.+...... ...++.+.|.++|+.+.... . .|+++...
T Consensus 339 ~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-------~--~r~~~~~~ 407 (427)
T 3fq8_A 339 AIAQETG-HAACGGQ-VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ-------F--EAGFTSLA 407 (427)
T ss_dssp HHHHHTT-CCCEEEE-ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-------T--SCEECCTT
T ss_pred HHHHhCC-CCeEEEE-eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC-------C--CCEEeeCc
Confidence 4 33 2111111 345677776432111 13578999999998764321 1 15555567
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 010897 425 FSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 425 ~t~~~~~~l~~~l~~~l~~ 443 (498)
.|+++++++++.|++++++
T Consensus 408 ~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 408 HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 7999999999999988764
No 220
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.80 E-value=2.2e-18 Score=176.19 Aligned_cols=250 Identities=18% Similarity=0.158 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceee---ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CchhHHH----
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWE---- 168 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~-~~h~~~~---- 168 (498)
.+++.+.+|+++|.+. .++ +++|++|+.+++.++.++ +++|++++ +.|..+.
T Consensus 75 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~p-------------GD~Vl~~~~~~y~~~~~~~g 134 (427)
T 3i16_A 75 RDSLDAVYARVFNTES-------ALVRPHFVNGTHALGAALFGNLRP-------------GNTMLSVCGEPYDTLHDVIG 134 (427)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHHCCT-------------TCEEEESSSSCCGGGHHHHT
T ss_pred HHHHHHHHHHHhCCcc-------eEEeCCCccHHHHHHHHHHHHhCC-------------CCEEEEeCCCccHHHHHHHh
Confidence 4455567999999864 455 788999998888876442 47899998 7887655
Q ss_pred -------HHHHHcCCeeEEEEecCCccccCHHHHHHHhh--hCCeEEEEee----ccCCcccccCHHHHHHHHHH--hhc
Q 010897 169 -------KFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNE 233 (498)
Q Consensus 169 -------~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~--~~t~~v~~~~----~~t~tG~~~~l~~I~~la~~--~~~ 233 (498)
..++..|++++.++++++ +.+|+++|+++++ ++|++|+++. ++|++|.+.|+++|.++|++ +
T Consensus 135 ~~~~~~~~~l~~~G~~~~~v~~~~~-g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~-- 211 (427)
T 3i16_A 135 ITENSNMGSLKEFGINYKQVDLKED-GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRK-- 211 (427)
T ss_dssp CSCCCSSCCTGGGTCEEEECCCCTT-SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCT--
T ss_pred ccccchHHHHHHcCCEEEEecCccC-CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCC--
Confidence 334567999999998765 7899999999998 7899999999 99999999999999999999 8
Q ss_pred ccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCC--CCeEEEEEeCCCCCCccccc--ccCccCC
Q 010897 234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRTKDDLPDELVF--HINYLGS 309 (498)
Q Consensus 234 ~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p--~g~g~~~~~~~~~l~~~~~~--~~~yl~~ 309 (498)
|++++||++|+.++. ... ... .++|+++.|.||+++++ ...|+++.+ ++.+ +.+.. ....++.
T Consensus 212 ----g~~livD~a~~~~~~---~~~-p~~---~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li-~~l~~~~~~~~~g~ 278 (427)
T 3i16_A 212 ----DIICFVDNCYGEFMD---TKE-PTD---VGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCI-EKTSYRLTVPGIGG 278 (427)
T ss_dssp ----TSEEEEECTTTTTSS---SSC-GGG---GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHH-HHHHHHHSCTTTGG
T ss_pred ----CCEEEEECCCccccc---cCC-ccc---cCCeEEEecCcccCCCCCCceEEEEEEC-HHHH-HHHHHhcccCccCc
Confidence 999999999987652 111 111 25799999999998663 334777754 2222 22111 1111111
Q ss_pred CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCCCcc-----EEEEEecCCC
Q 010897 310 DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP-----LVAFSLKDSS 384 (498)
Q Consensus 310 ~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~-----~v~f~~~~~~ 384 (498)
. .+. ... ..+..++ |......++++..+++.++.+.|+++| +++++.+ .+ +++|.+.+
T Consensus 279 ~-------~~~-~~~--~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~p~~--~~~~~~~i~~i~l~~-- 341 (427)
T 3i16_A 279 E-------CGS-TFG--VVRSMYQ--GLFLAPHISMEALKGAILCSRIMELAG-FEVMPKY--DEKRSDIIQSIKFND-- 341 (427)
T ss_dssp G-------CCC-CTT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEESCT--TSCCSSSCEEEECSS--
T ss_pred c-------CCc-cHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCC--CCCCccEEEEEEECC--
Confidence 0 010 011 0222222 223446788999999999999999998 7875432 33 78888842
Q ss_pred CCCHHHHHHHHHhcC
Q 010897 385 AHTVFEISEGLRKFG 399 (498)
Q Consensus 385 ~~~~~~l~~~L~~~G 399 (498)
.....++++.|....
T Consensus 342 ~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 342 KDKLIEFCKGIQTGS 356 (427)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhcC
Confidence 234568888888865
No 221
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.79 E-value=1.4e-18 Score=177.15 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceee---ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CchhHHHHH--
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEKF-- 170 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~-~~h~~~~~~-- 170 (498)
.+++.+.+|+++|.+. ..+ +++|++|+.+++.++.++ +++|++++ +.|..+...
T Consensus 61 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~~-------------GD~Vl~~~~~~y~~~~~~~~ 120 (409)
T 3jzl_A 61 RDTLERVYATVFKTEA-------ALVRPQIISGTHAISTVLFGILRP-------------DDELLYITGQPYDTLEEIVG 120 (409)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEETTSCSHHHHHHHHHHHHCCT-------------TCEEEECSSSCCTTHHHHHT
T ss_pred HHHHHHHHHHHhCCCc-------EEEECCCccHHHHHHHHHHHhcCC-------------CCEEEEeCCCCcHhHHHHHh
Confidence 4455667999999864 444 889999999888876442 47899988 888877743
Q ss_pred --------HHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEee----ccCCcccccCHHHHHHHHHH--hhcccC
Q 010897 171 --------ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEETG 236 (498)
Q Consensus 171 --------~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~----~~t~tG~~~~l~~I~~la~~--~~~~~~ 236 (498)
++..|++++.++++++ +.+|+++|+++++++|++|+++. ++|++|.+.|+++|.++|++ +
T Consensus 121 ~~g~~~~~l~~~G~~~~~v~~~~~-g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~----- 194 (409)
T 3jzl_A 121 IRKQGQGSLKDFHIGYSSVPLLEN-GDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINP----- 194 (409)
T ss_dssp SSSSSSSCTGGGTCEEEECCCCTT-SCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-----
T ss_pred cccchhhHHHHcCCEEEEeCCCCC-CCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCC-----
Confidence 4567999999998765 88999999999999999999999 99999999999999999999 8
Q ss_pred CCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCCC--CeEEEEEeCCCCCCccccc--ccCccCCCCC
Q 010897 237 WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVF--HINYLGSDQP 312 (498)
Q Consensus 237 ~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p~--g~g~~~~~~~~~l~~~~~~--~~~yl~~~~~ 312 (498)
|+++|||++|+.++. ..+. .. .++|++..|.||+++++. ..|+++.+ ++.+ +.+.. ...+++...
T Consensus 195 -~~~livD~a~~~~~~---~~~p-~~---~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li-~~l~~~~~~~~~g~~~- 263 (409)
T 3jzl_A 195 -EVIVFVDNCYGEFVE---YQEP-PE---VGADIIAGSLIKNPGGGLAKTGGYIAGK-EALV-DLCGYRLTTPGIGREA- 263 (409)
T ss_dssp -TCEEEEECTTCTTTS---SCCS-GG---GTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHH-HHHHHHHSCTTTGGGC-
T ss_pred -CCEEEEeCCcccccc---cCCc-cc---cCCeEEEECccccCCccCCceEEEEEeC-HHHH-HHHHHHhccccccccc-
Confidence 999999999987652 1111 11 258999999999987653 24777654 3222 22211 111121110
Q ss_pred CccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--Cc-cEEEEEecCCCCCCHH
Q 010897 313 TFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GV-PLVAFSLKDSSAHTVF 389 (498)
Q Consensus 313 ~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~-~~v~f~~~~~~~~~~~ 389 (498)
+..... +++.++. ......++++..++++++.+.|+++| +++.+.+. +. -+++|.+.+ .....
T Consensus 264 -----g~~~~~----~~~~l~g--l~~~~~r~~~~~~~a~~la~~L~~~g-~~v~p~~~~~~~~~i~~i~l~~--~~~~~ 329 (409)
T 3jzl_A 264 -----GASLYS----LLEMYQG--FFLAPHVTAQAIKGARFTAAMLAEFG-VEADPVWDAPRTDLIQSVSFHN--KEKMV 329 (409)
T ss_dssp -----CCCTTC----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTT-CEEESCTTSCCSSSCCEEECSC--HHHHH
T ss_pred -----cccHHH----HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCCCCCccEEEEEEeCC--HHHHH
Confidence 111000 1222222 23346778888999999999999997 78754321 11 177788742 33457
Q ss_pred HHHHHHHhcC
Q 010897 390 EISEGLRKFG 399 (498)
Q Consensus 390 ~l~~~L~~~G 399 (498)
++++.|....
T Consensus 330 ~~~~~L~~~~ 339 (409)
T 3jzl_A 330 AFAQAIQAAS 339 (409)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 8889998876
No 222
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.78 E-value=2.7e-17 Score=169.50 Aligned_cols=331 Identities=13% Similarity=0.035 Sum_probs=197.1
Q ss_pred cCCCCCcccccc---c-CCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 53 DGNPRLNLASFV---T-TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 53 ~~~p~~~~~~~~---~-~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
+|+..+++.+.. + .+.+|.+.+++.+.+..... + . ...++..++.++++++++ .. ..+.+|+||++
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~-~-~--~~~~~~~~l~~~la~~~~-~~-----~~v~~~~sgse 123 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWL-Y-G--APGEAEVLLAEKILGYVK-RG-----GMIRFVNSGTE 123 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC-C-S--SCCHHHHHHHHHHHHHHC-TT-----CEEEEESSHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCC-C-C--CCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHH
Confidence 455444554432 1 12568899999888876321 1 1 234555677888888884 11 13899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhH-HHHHHH-------------HcCC------eeEEEEecCCcc
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC-WEKFAR-------------YFEV------ELKEVKLEEGYY 188 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~-~~~~~~-------------~~g~------~~~~v~~~~~~~ 188 (498)
|+.+++.+++.- . +++.||+.+++|.. ...+.. ..|+ .+..++.
T Consensus 124 A~~~al~~ar~~-~----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 187 (434)
T 2epj_A 124 ATMTAIRLARGY-T----------GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY----- 187 (434)
T ss_dssp HHHHHHHHHHHH-H----------CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----
T ss_pred HHHHHHHHHHHh-h----------CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----
Confidence 999999886431 1 13466666554432 211110 1232 2444442
Q ss_pred ccCHHHHHHHhhh---CCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCcc
Q 010897 189 VMNPVKAVELVDE---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 261 (498)
Q Consensus 189 ~~d~~~L~~~i~~---~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~ 261 (498)
.|+++|++++++ ++++|++...++++|.+.| +++|.++|+++ |+++++|++|+++. ..+....
T Consensus 188 -~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~~---~g~~~~~ 257 (434)
T 2epj_A 188 -NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES------GALLILDEVVTGFR---LGLEGAQ 257 (434)
T ss_dssp -TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH------TCEEEEEETTTTTT---SSTTHHH
T ss_pred -CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEcchhcee---CCcchhh
Confidence 389999999974 5666655555566899888 99999999999 99999999999762 1111111
Q ss_pred c-cCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHH
Q 010897 262 D-FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGY 340 (498)
Q Consensus 262 ~-~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~ 340 (498)
+ ++. ..|.+++ +|.+.++.++|+++.++. .. +.+... +......+ ++.+.....+..++++.+..
T Consensus 258 ~~~~~-~~di~s~--sK~l~~G~~~G~v~~~~~-~~-~~l~~~----~~~~~~~t--~~~~~~~~aa~~a~l~~~~~--- 323 (434)
T 2epj_A 258 GYFNI-EGDIIVL--GKIIGGGFPVGAVAGSRE-VM-SLLTPQ----GKVFNAGT--FNAHPITMAAGLATLKALEE--- 323 (434)
T ss_dssp HHHTC-CCSEEEE--EGGGGTTSSCEEEEECHH-HH-TTBTTT----SSBCCCCT--TTTCHHHHHHHHHHHHHHHH---
T ss_pred HHhCC-CCCeeee--cchhcCCcceeeeeecHH-HH-HhhccC----CCcccCCC--CCcCHHHHHHHHHHHHHHHh---
Confidence 1 121 2455544 588777778899987642 21 111110 00000011 22223344444555554433
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----CCeEEeeCCCCccEEEEEecCCC-----------CCCHHHHHHHHHhcCcEeeee
Q 010897 341 KNIMENCMGNARALREGLEKT----GRFEILSKDVGVPLVAFSLKDSS-----------AHTVFEISEGLRKFGWIVPAY 405 (498)
Q Consensus 341 ~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~-----------~~~~~~l~~~L~~~G~~v~~~ 405 (498)
.+..++..++++++.+.|+++ + +.....+ ..+++.+.+++.. ..+..++.+.|.++|+.+...
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 401 (434)
T 2epj_A 324 EPVYSVSREAAKALEEAASEVLDRTG-LPYTINR-VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPS 401 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEE-ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEE-eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEecc
Confidence 345667777888888888764 4 3211112 3567888875311 123568999999999876432
Q ss_pred cCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 406 TMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 406 ~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
. ...+|+ ....|.++++++++.|+++++++
T Consensus 402 ~-------~~~~~~--~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 402 N-------LEAVFT--GLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp T-------TSCEEC--CTTCSHHHHHHHHHHHHHHHHHH
T ss_pred C-------CCcEEE--eccCCHHHHHHHHHHHHHHHHHH
Confidence 1 112454 45679999999999999998765
No 223
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.77 E-value=3.5e-17 Score=168.41 Aligned_cols=336 Identities=13% Similarity=0.076 Sum_probs=191.5
Q ss_pred cCCCCCccccccc---C-CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 53 DGNPRLNLASFVT---T-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 53 ~~~p~~~~~~~~~---~-~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
+|+..+.+.+... . +.+|.+.+++.+.+....... ++ .....++.+.++++++ .. ..+.+|+||++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~--~~--~~~~~~l~~~la~~~~-~~-----~~v~~~~~Gse 120 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFG--AP--TEIENKLAKLVIERVP-SI-----EIVRMVNSGTE 120 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCS--SC--CHHHHHHHHHHHHHST-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcC--CC--CHHHHHHHHHHHHhCC-CC-----CEEEEeCChHH
Confidence 4555554444322 2 247889999988877643211 22 2333456667888875 22 24999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCC-chhHHHHHHHHcCCeeEEEEecCCccc-------------cCHHH
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN-VQVCWEKFARYFEVELKEVKLEEGYYV-------------MNPVK 194 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~-~h~~~~~~~~~~g~~~~~v~~~~~~~~-------------~d~~~ 194 (498)
|+..++..++... ++++|++.++ .|.....++...|..+..++.....+. -|+++
T Consensus 121 a~~~ai~~a~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 3k28_A 121 ATMSALRLARGYT-----------GRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLES 189 (429)
T ss_dssp HHHHHHHHHHHHH-----------TCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHH
T ss_pred HHHHHHHHHHHhh-----------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHH
Confidence 9999998876531 1346666554 443333332222322222221110000 18999
Q ss_pred HHHHhh---hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCC
Q 010897 195 AVELVD---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLP 266 (498)
Q Consensus 195 L~~~i~---~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~ 266 (498)
|+++++ +++.+|++...++++|.+.| +++|.++|++| |+++|+|++|.++ . .......+ ++.
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~~~~~~- 259 (429)
T 3k28_A 190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQN------GALLIFDEVMTGF-R--VAYNCGQGYYGV- 259 (429)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTT-T--SSTTHHHHHHTC-
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchHHHHhCC-
Confidence 999887 34566666555556678877 99999999999 9999999999875 2 11110001 121
Q ss_pred CeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHH
Q 010897 267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMEN 346 (498)
Q Consensus 267 ~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~ 346 (498)
..|.++++ |.+.++.++|+++.+++ .. +.+....... ...+ ++.+.....+..++++.+. ++..++
T Consensus 260 ~~di~t~s--K~~~~G~~iG~~~~~~~-~~-~~~~~~~~~~----~~~t--~~~~~~a~aaa~aal~~~~----~~~~~~ 325 (429)
T 3k28_A 260 TPDLTCLG--KVIGGGLPVGAYGGKAE-IM-RQVAPSGPIY----QAGT--LSGNPLAMAAGYETLVQLT----PESYVE 325 (429)
T ss_dssp CCSEEEEC--GGGGTTSCCEEEEECHH-HH-TTBTTTSSBC----CCCT--TTTCHHHHHHHHHHHHTCC----HHHHHH
T ss_pred CCceehhh--hhhcCCCCeEEEEEcHH-HH-hhhccCCCcc----ccCC--CCCChHHHHHHHHHHHHHH----HHHHHH
Confidence 24555543 77667788999886542 21 1111000000 0001 2222233344444454433 456677
Q ss_pred HHHHHHHHHHHHhcC----CCeEEeeCCCCccEEEEEecCCCC-----------CCHHHHHHHHHhcCcEeeeecCCCCC
Q 010897 347 CMGNARALREGLEKT----GRFEILSKDVGVPLVAFSLKDSSA-----------HTVFEISEGLRKFGWIVPAYTMPANA 411 (498)
Q Consensus 347 ~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~-----------~~~~~l~~~L~~~G~~v~~~~~~~~~ 411 (498)
..++++++.+.|+++ +....+.. ..+++.|.+..... ....++.+.|.++|+.+...
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------ 397 (429)
T 3k28_A 326 FERKAEMLEAGLRKAAEKHGIPHHINR--AGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPS------ 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEE--ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSS------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEe--eccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecC------
Confidence 777777777777654 42222222 35677777643211 11368889999999876432
Q ss_pred CCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 412 ENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 412 ~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
+...+|++ ...|+++++++++.|+++++++
T Consensus 398 -~~~~~r~~--~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 398 -QFEGLFLS--TVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp -TTSCBCCC--TTCCHHHHHHHHHHHHHHHHTC
T ss_pred -CCCCEEEE--CCCCHHHHHHHHHHHHHHHHHH
Confidence 12346775 4568999999999999888653
No 224
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.77 E-value=4.5e-17 Score=168.78 Aligned_cols=317 Identities=12% Similarity=0.017 Sum_probs=188.9
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+..... + ....+++.++.++++++++ .. ..+.+|+||++|+.+++.+++.- .
T Consensus 74 ~~~~v~~a~~~~~~~~~~-~---~~~~~~~~~la~~l~~~~~-~~-----~~v~~~~gg~eA~~~al~~ar~~-~----- 137 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGVQ-Y---AASHPLEVRWAERIVAAFP-SI-----RKLRFTGSGTETTLLALRVARAF-T----- 137 (453)
T ss_dssp TCHHHHHHHHHHHTTTCS-S---CSSCHHHHHHHHHHHHHCT-TC-----SEEEEESCHHHHHHHHHHHHHHH-H-----
T ss_pred CCHHHHHHHHHHHHhCCC-C---CCCCHHHHHHHHHHHhhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHh-h-----
Confidence 568899999988876321 1 2356788899999999885 22 24999999999999999886431 1
Q ss_pred cCCCCCCcEEEEcCCchhHHHHHH-HH----------cCCe------eEEEEecCCccccCHHHHHHHhhh---CCeEEE
Q 010897 148 QGKPYDKPNIVTGANVQVCWEKFA-RY----------FEVE------LKEVKLEEGYYVMNPVKAVELVDE---NTICVA 207 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~~~-~~----------~g~~------~~~v~~~~~~~~~d~~~L~~~i~~---~t~~v~ 207 (498)
+++.||+.+++|..+...+ .. .|+. +..++ + .|+++|++++++ ++++|+
T Consensus 138 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~-~d~~~le~~l~~~~~~~~~vi 206 (453)
T 2cy8_A 138 -----GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR-----P-DDIEGMREVFANHGSDIAAFI 206 (453)
T ss_dssp -----CCCEEEEECC----------------------------CGGGEEEEC-----T-TCHHHHHHHHHHHGGGEEEEE
T ss_pred -----CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC-----C-CCHHHHHHHHHhcCCCEEEEE
Confidence 1246777666554332211 11 1331 22222 2 489999999973 566665
Q ss_pred EeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCccCCCC
Q 010897 208 AILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVY 282 (498)
Q Consensus 208 ~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~l~~p 282 (498)
+...++++|.+.| +++|.++|++| |+++++|++|+++. ..+....+ +++ ..|.++ ..|++.++
T Consensus 207 ~ep~~~~tG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~~---~g~~~~~~~~~~-~~di~s--~sK~l~~G 274 (453)
T 2cy8_A 207 AEPVGSHFGVTPVSDSFLREGAELARQY------GALFILDEVISGFR---VGNHGMQALLDV-QPDLTC--LAKASAGG 274 (453)
T ss_dssp ECSSEHHHHTEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTT---TCTTHHHHHHTC-CCSEEE--EEGGGGTT
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecCccccc---cCchhhhHHhCC-CCcEEE--EChhhhCC
Confidence 5544566898877 99999999999 99999999999752 11111111 121 245554 44888777
Q ss_pred CCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHhcC
Q 010897 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR-LGFEGYKNIMENCMGNARALREGLEKT 361 (498)
Q Consensus 283 ~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~-lg~~g~~~~~~~~~~~a~~l~~~L~~~ 361 (498)
.++|+++.+++ .. +.+.. ...+.. .....++.+.....+..++++. + .+ +..++..++++++.+.|+++
T Consensus 275 ~~~G~v~~~~~-~~-~~l~~--~~~~~~--~~~~t~~~n~~~~aa~~aal~~~~-~~---~~~~~~~~~~~~l~~~L~~~ 344 (453)
T 2cy8_A 275 LPGGILGGRED-VM-GVLSR--GSDRKV--LHQGTFTGNPITAAAAIAAIDTIL-ED---DVCAKINDLGQFAREAMNHL 344 (453)
T ss_dssp SSCEEEEECHH-HH-TTSSS--CC-----------CCCCHHHHHHHHHHHHHHH-HT---THHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEechHH-HH-HHhcc--ccCCCc--eeCCCCCCCHHHHHHHHHHHHHHh-hh---hHHHHHHHHHHHHHHHHHHH
Confidence 88999987642 21 11110 000000 0000122223444445555655 4 33 45566677777887777654
Q ss_pred ----CCeEEeeCCCCccEEEEEecC-----C------------CCCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEe
Q 010897 362 ----GRFEILSKDVGVPLVAFSLKD-----S------------SAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVV 420 (498)
Q Consensus 362 ----~~~~~~~~~~~~~~v~f~~~~-----~------------~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~ 420 (498)
+....+. + ..+++.+.+++ . +..+..++.+.|.++|+.+. |. + . +|+
T Consensus 345 ~~~~~~~~~~~-~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~----~~---~-~-~~l- 412 (453)
T 2cy8_A 345 FARKGLNWLAY-G-RFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIG----GR---G-S-VFL- 412 (453)
T ss_dssp HHHTTCCEEEE-C-CTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECB----TT---T-E-EEC-
T ss_pred HhhCCCcEEEE-E-eeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEe----CC---C-C-EEe-
Confidence 4222222 2 45678888753 1 01125689999999998762 21 1 2 555
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 421 VREDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 421 v~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
....++++++++++.|+++++.+.+
T Consensus 413 -~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 413 -SAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -eccCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567999999999999999988754
No 225
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.77 E-value=2.8e-18 Score=176.53 Aligned_cols=319 Identities=11% Similarity=0.034 Sum_probs=201.8
Q ss_pred cccccccCCC-hHHHHHHHHHHhcc-CCC--CCcCCc-c---hHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHH
Q 010897 59 NLASFVTTWM-EPECDKLVMASINK-NYV--DMDEYP-V---TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (498)
Q Consensus 59 ~~~~~~~~~~-~~~~~~~l~~~~~~-n~~--~~~~~~-~---~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~ 130 (498)
++....+..+ ++.+.+++.+++.. +.. .|.... + ..++++.+.+++.+..+...+. ..+++|+|+++++
T Consensus 60 ~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~---~~iv~t~G~~~al 136 (427)
T 2hox_A 60 DVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKD---RYIVFGVGVTQLI 136 (427)
T ss_dssp ECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTT---CEEEEESHHHHHH
T ss_pred EecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCC---CEEEEeCCHHHHH
Confidence 3343333333 34567777777632 221 244444 5 6788888888887654432211 2489999999999
Q ss_pred HHHHHHH--------HHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhC
Q 010897 131 MLAGLAF--------KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN 202 (498)
Q Consensus 131 ~la~~a~--------~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~ 202 (498)
.+++.++ .+ .+++|+++.++|..+...++.+|++++. +.+|+++|+++++++
T Consensus 137 ~~~~~~l~~~~~~~~~~-------------~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~-------~~~d~~~l~~~~~~~ 196 (427)
T 2hox_A 137 HGLVISLSPNMTATPDA-------------PESKVVAHAPFYPVFREQTKYFDKKGYV-------WAGNAANYVNVSNPE 196 (427)
T ss_dssp HHHHHHHSCCTTTCTTS-------------CCEEEEECSSCCHHHHHHHHHSCBTTEE-------EEEEGGGGTTCSCGG
T ss_pred HHHHHHHhhccccccCC-------------CCCEEEEeCCCcccHHHHHHHcCCeeee-------ecCCHHHHHHhhcCC
Confidence 9988887 32 1468999999999999999999998763 457788888888888
Q ss_pred CeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCC-C
Q 010897 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-V 281 (498)
Q Consensus 203 t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~-~ 281 (498)
+++|++++|+||||.+.+ + ++ . ++..++|+++.. ++.. -. .+. ...+++..|.+|.++ +
T Consensus 197 ~k~v~l~~p~NPtG~~~~-~----~l--~------~~~~i~d~~~~~---~~~s-~~--~~~-~~~~i~~~S~SK~~g~~ 256 (427)
T 2hox_A 197 QYIEMVTSPNNPEGLLRH-A----VI--K------GCKSIYDMVYYW---PHYT-PI--KYK-ADEDILLFTMSKFTGHS 256 (427)
T ss_dssp GEEEEEESSCTTTCCCCC-C----SS--T------TCEEEEECTTCS---TTTS-CC--CSC-BCCSEEEEEHHHHTSCG
T ss_pred ceEEEEcCCCCCcccccH-H----HH--c------CCCEEEeecccC---CCCC-cc--ccC-CCceEEEEeChhcCCCC
Confidence 999999999999999988 4 22 2 456888887743 1110 00 111 246788889999874 5
Q ss_pred CCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcH-------------HHHHHHHHHHH
Q 010897 282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-------------EGYKNIMENCM 348 (498)
Q Consensus 282 p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~-------------~g~~~~~~~~~ 348 (498)
+.++||++.++++.+ ..+.....+.. .+ ...+.|.++...+.. +-+++..++..
T Consensus 257 G~RiG~~~~~~~~l~-~~l~~~~~~~~---------~~---~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (427)
T 2hox_A 257 GSRFGWALIKDESVY-NNLLNYMTKNT---------EG---TPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLR 323 (427)
T ss_dssp GGCCEEEEECCHHHH-HHHHHHHHHHT---------SS---CCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHH
T ss_pred CceEEEEEECCHHHH-HHHHHHHHhcC---------CC---CCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHH
Confidence 567999997544322 11111000000 00 122334444433322 12345567777
Q ss_pred HHHHHHHHHHhcCCCeEE--ee-----------CCCCccEEEEEecCCCCCCHHHHHHHHH-hcCcEeeeecCCCCCCCe
Q 010897 349 GNARALREGLEKTGRFEI--LS-----------KDVGVPLVAFSLKDSSAHTVFEISEGLR-KFGWIVPAYTMPANAENV 414 (498)
Q Consensus 349 ~~a~~l~~~L~~~~~~~~--~~-----------~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~G~~v~~~~~~~~~~~~ 414 (498)
++++++.+.|++++++.+ +. .+....++.++++. +..+++++|. ++|+.+........ +.
T Consensus 324 ~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~----~~~~~~~~ll~~~gI~v~pg~~f~~--~~ 397 (427)
T 2hox_A 324 ERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW----EEDKDCYQTFQNGRINTQNGVGFEA--SS 397 (427)
T ss_dssp HHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS----GGGCSHHHHHHHTTEECEEGGGGTS--CT
T ss_pred HHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC----cHHHHHHHHHHHCCEEEcCCCccCC--CC
Confidence 889999999999877875 21 12234566667743 3346777764 78988764332111 35
Q ss_pred eEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 415 AVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 415 ~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
.++|+++.. +.++++++++.|++++
T Consensus 398 ~~~Ris~~~--~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 398 RYVRLSLIK--TQDDFDQLMYYLKDMV 422 (427)
T ss_dssp TEEEEECSS--CHHHHHHHHHHHHHHH
T ss_pred CEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 689999974 6777777777776655
No 226
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.77 E-value=1.5e-17 Score=170.09 Aligned_cols=251 Identities=15% Similarity=0.121 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcceee---ecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CchhHHH----
Q 010897 97 QNRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWE---- 168 (498)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~---t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~-~~h~~~~---- 168 (498)
.+++.+.+++++|.+. .++ +++|++||.+++.++.++ +++|++++ +.|..+.
T Consensus 76 ~~~Le~~lA~l~g~e~-------alv~p~~~sGt~A~~~al~all~p-------------GD~Vl~~~~~~y~~~~~~~g 135 (427)
T 3hvy_A 76 RDSLDRVYANIFNTES-------AFVRPHFVNGTHAIGAALFGNLRP-------------NDTMMSICGMPYDTLHDIIG 135 (427)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHTCCT-------------TCEEEECSSSCCGGGHHHHT
T ss_pred HHHHHHHHHHHhCCCc-------eEEeCCCCcHHHHHHHHHHHhcCC-------------CCEEEEeCCCCchhHHHHhc
Confidence 4455667999999874 455 788999998888876443 57899988 7776554
Q ss_pred -------HHHHHcCCeeEEEEecCCccccCHHHHHHHhh--hCCeEEEEee----ccCCcccccCHHHHHHHHHH--hhc
Q 010897 169 -------KFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNE 233 (498)
Q Consensus 169 -------~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~--~~t~~v~~~~----~~t~tG~~~~l~~I~~la~~--~~~ 233 (498)
..++..|++++.+++ + ++.+|+++|+++++ ++|++|+++. ++|++|.+.|+++|.++|++ +
T Consensus 136 ~~~~~~~~~l~~~G~~~~~v~~-~-~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~-- 211 (427)
T 3hvy_A 136 MDDSKKVGSLREYGVKYKMVDL-K-DGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNE-- 211 (427)
T ss_dssp CCTTCCSCCTGGGTCEEEECCC-B-TTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCS--
T ss_pred cccchhhhHHHHcCCEEEEecC-C-CCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCC--
Confidence 334567999999998 4 37899999999998 7899999999 99999999999999999999 7
Q ss_pred ccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCCC--CCeEEEEEeCCCCCCccccc--ccCccCC
Q 010897 234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRTKDDLPDELVF--HINYLGS 309 (498)
Q Consensus 234 ~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~p--~g~g~~~~~~~~~l~~~~~~--~~~yl~~ 309 (498)
|++++||+||+.++. ... +.. .++|+++.|.||+++++ ...|+++.+ ++.+ +.+.. ....++.
T Consensus 212 ----g~~livD~a~~~~~~---~~~-p~~---~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li-~~l~~~~~~~~~g~ 278 (427)
T 3hvy_A 212 ----NVIVFVDNCYGEFVE---EKE-PTD---VGADIIAGSLIKNIGGGIATTGGYIAGK-EEYV-TQATFRVTVPGIGG 278 (427)
T ss_dssp ----SSEEEEECTTCTTTS---SSC-GGG---GTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHH-HHHHHHHSCTTTGG
T ss_pred ----CCEEEEECCcccccc---CCC-Ccc---cCCeEEEECCcccccccccceEEEEEEC-HHHH-HHHHHHhhcCCccc
Confidence 999999999987652 111 111 24799999999998763 233777654 3222 22111 1111111
Q ss_pred CCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--Cc-cEEEEEecCCCCC
Q 010897 310 DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GV-PLVAFSLKDSSAH 386 (498)
Q Consensus 310 ~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~~-~~v~f~~~~~~~~ 386 (498)
. .+.. .. ..+..++ +......++++..+++.++.+.|+++| +++.+.+. +. -+++|.+.+ ..
T Consensus 279 ~-------~~~~-~~--~a~~~~~--gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~p~~~~~~~~li~~~~l~~--~~ 343 (427)
T 3hvy_A 279 E-------CGST-FG--VMRSLYE--GLFMAPHVTIEAVKGAVFCARIMELAG-FDVLPKYNDKRTDIIQAIKFND--EK 343 (427)
T ss_dssp G-------CCCC-TT--CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEESCTTSCCSSSEEEEECSS--HH
T ss_pred c-------cCCC-HH--HHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCCCCCceEEEEEeCCC--HH
Confidence 0 0000 01 0122222 223345788889999999999999998 78754321 11 178888742 23
Q ss_pred CHHHHHHHHHhcC
Q 010897 387 TVFEISEGLRKFG 399 (498)
Q Consensus 387 ~~~~l~~~L~~~G 399 (498)
...++++.|....
T Consensus 344 ~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 344 KLIDFIKGIQTAS 356 (427)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccc
Confidence 4567888888754
No 227
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.76 E-value=5.8e-17 Score=168.77 Aligned_cols=345 Identities=12% Similarity=0.058 Sum_probs=201.6
Q ss_pred cCCCCCccccccc----CCChHHHHHHHHHHhccC----CCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeec
Q 010897 53 DGNPRLNLASFVT----TWMEPECDKLVMASINKN----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTV 124 (498)
Q Consensus 53 ~~~p~~~~~~~~~----~~~~~~~~~~l~~~~~~n----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ 124 (498)
+|+..+++.+... .+.+|.+.+++.+.+... ...+.. ....++++++.+.|+++++... ..+.+++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~~~-----~~v~f~~ 134 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKGM-----SQLITMA 134 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTTC-----CEEEEES
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCCCc-----CEEEEeC
Confidence 4555555544332 234788888888765431 111111 2235667776666777664322 2399999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHh--------------cCCCC-CCcEEEEcCC-chhHHHHHHHHcCCe-----------
Q 010897 125 GSSEAIMLAGLAFKRKWQQKRKE--------------QGKPY-DKPNIVTGAN-VQVCWEKFARYFEVE----------- 177 (498)
Q Consensus 125 g~sea~~la~~a~~~~~~~~~~~--------------~g~~~-~~~~Iv~s~~-~h~~~~~~~~~~g~~----------- 177 (498)
||+||+..|+++++..+..+.+. .+.+. .+++||+.+. .|.....+....|..
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~ 214 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 214 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence 99999999999886543211000 00011 1357777664 444444444443321
Q ss_pred eEEEEecCCcc-------------ccCHHHHHHHhhh------CCeEEEEeeccCCcccccC----HHHHHHHHHHhhcc
Q 010897 178 LKEVKLEEGYY-------------VMNPVKAVELVDE------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEE 234 (498)
Q Consensus 178 ~~~v~~~~~~~-------------~~d~~~L~~~i~~------~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~ 234 (498)
+..++.....+ ..|+++|+++|++ ++++|++...++++|.+.| +++|.++|+++
T Consensus 215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~--- 291 (472)
T 1ohv_A 215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH--- 291 (472)
T ss_dssp CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT---
T ss_pred CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh---
Confidence 11223211001 2378999999986 7888887777788999887 99999999999
Q ss_pred cCCCceEEEecCcccccccccCCCCccc-cCCC-CeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCC
Q 010897 235 TGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLP-LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQP 312 (498)
Q Consensus 235 ~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~-~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~ 312 (498)
|+++|+|++|.|+.. ...-.... +++. ..|.++++ |.+++ .|+++ + ++ +.. ....+.
T Consensus 292 ---g~lli~DEv~~g~g~--~g~~~~~~~~gv~~~~Di~t~s--K~~l~---GG~~~-~-~~-~~~---~~~~~~----- 350 (472)
T 1ohv_A 292 ---GCAFLVDEVQTGGGS--TGKFWAHEHWGLDDPADVMTFS--KKMMT---GGFFH-K-EE-FRP---NAPYRI----- 350 (472)
T ss_dssp ---TCEEEEECTTTTTTT--TSSSSGGGGGCCSSCCSEEEEC--GGGSS---EEEEE-C-GG-GSC---SSSSSS-----
T ss_pred ---CCEEEEeCcccCCCC--CCCchhccccCCCCCCCEEEEc--ccccc---CCccC-c-hh-hcc---cccccc-----
Confidence 999999999986431 11100111 1221 26777665 87322 26554 2 21 210 011000
Q ss_pred CccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CC-eEEeeCCCCccEEEEEecCCCCCC
Q 010897 313 TFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GR-FEILSKDVGVPLVAFSLKDSSAHT 387 (498)
Q Consensus 313 ~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~-~~~~~~~~~~~~v~f~~~~~~~~~ 387 (498)
..+ ++-+.....+..++|+.+..+ ...++..+++++|.+.|+++ +. +.-+.. ...++.|.+.+ ..+
T Consensus 351 ~~T--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~--~g~~~~~~~~~--~~~ 421 (472)
T 1ohv_A 351 FNT--WLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD--ESI 421 (472)
T ss_dssp CCS--SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS--HHH
T ss_pred cCc--cCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC--CceEEEEEeCC--hhH
Confidence 111 122223444455666555443 34567777888888887764 32 332222 34677777632 123
Q ss_pred HHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHH
Q 010897 388 VFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 388 ~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
...++++|.++|+.+... +..++|+++...+|.++++++++.|++++++
T Consensus 422 ~~~~~~~l~~~Gv~~~~~-------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 422 RNKLISIARNKGVMLGGC-------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHHHHHHHHTTEECEEE-------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCeEEecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 568999999999876432 2357999998889999999999999988764
No 228
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.76 E-value=2.3e-16 Score=162.26 Aligned_cols=333 Identities=11% Similarity=0.072 Sum_probs=183.7
Q ss_pred cCCCCCcccccccC----CChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 53 DGNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 53 ~~~p~~~~~~~~~~----~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
+|+..+.+.+.... +.+|.+.+++.+.+...... .++ .....++.++++++++ .. ..+++|+||++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~--~~~--~~~~~~la~~l~~~~~-~~-----~~v~~~~sGse 120 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF--GAP--TEMEVKMAQLVTDLVP-TM-----DMVRMVNSGTE 120 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC--SSC--CHHHHHHHHHHHHHST-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc--CCC--CHHHHHHHHHHHhhCC-CC-----CEEEEeCcHHH
Confidence 45554444443321 24688999999888764321 122 2445567778888886 22 24999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCC-chhHHHHHHHHcCCeeE--EEEecCC--------c--c-ccCHHH
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN-VQVCWEKFARYFEVELK--EVKLEEG--------Y--Y-VMNPVK 194 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~-~h~~~~~~~~~~g~~~~--~v~~~~~--------~--~-~~d~~~ 194 (498)
|+.++++.++.. . +++.|++.+. .|.....++...+.... ..|...+ . . ..|+++
T Consensus 121 a~~~al~~a~~~-------~----~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 4e77_A 121 ATMSAIRLARGY-------T----GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLAS 189 (429)
T ss_dssp HHHHHHHHHHHH-------H----CCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHH
T ss_pred HHHHHHHHHHHh-------h----CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHH
Confidence 999999876542 1 1346665544 44444322222121110 1111100 0 0 128999
Q ss_pred HHHHhhh---CCeEEEEeeccCC-cccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCC
Q 010897 195 AVELVDE---NTICVAAILGSTL-TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRL 265 (498)
Q Consensus 195 L~~~i~~---~t~~v~~~~~~t~-tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~ 265 (498)
|++++++ ++++| ++.|+++ +|.+.| +++|.++|+++ |+++|+|++|+++ . .......+ ++.
T Consensus 190 le~~l~~~~~~~~~v-i~ep~~~~~g~~~~~~~~l~~l~~l~~~~------~~lli~DEv~~g~-r--~g~~~~~~~~~~ 259 (429)
T 4e77_A 190 VRQAFEQYPQEVACI-IVEPVAGNMNCIPPLPEFLPGLRALCDEF------GALLIIDEVMTGF-R--VALAGAQDYYHV 259 (429)
T ss_dssp HHHHHHHSTTTEEEE-EECSSBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEEETTTBT-T--TBTTCHHHHTTC
T ss_pred HHHHHHhcCCCEEEE-EECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCc-c--cCcchHHHhcCC
Confidence 9999974 34444 4555555 567777 99999999999 9999999999976 1 11111011 121
Q ss_pred CCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccc-cCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHH
Q 010897 266 PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIM 344 (498)
Q Consensus 266 ~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~-~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~ 344 (498)
..|.++++ |.+.++.++|+++.+. +.. +.+... ..+.+ .+ ++-+.....+..++++.+..+ +..
T Consensus 260 -~pdi~t~s--K~~~~G~~~G~~~~~~-~~~-~~l~~~~~~~~~---~t----~~~~~~~~aaa~aal~~~~~~---~~~ 324 (429)
T 4e77_A 260 -IPDLTCLG--KIIGGGMPVGAFGGRR-EVM-NALAPTGPVYQA---GT----LSGNPIAMAAGFACLTEISQV---GVY 324 (429)
T ss_dssp -CCSEEEEE--GGGGTTSCCEEEEECH-HHH-TTBTTTSSBCC-----C----CCCCHHHHHHHHHHHHHHTST---THH
T ss_pred -CCCeeeec--ccccCCCCeEEEEECH-HHH-HHhccCCCcccc---CC----CCCCHHHHHHHHHHHHHHHhc---CHH
Confidence 23555444 8777778899887643 221 111100 00010 01 223334455555666555333 344
Q ss_pred HHHHHHHHHHHHHHhc----CCCeEEeeCCCCccEEEEEecCCCC------------CCHHHHHHHHHhcCcEeeeecCC
Q 010897 345 ENCMGNARALREGLEK----TGRFEILSKDVGVPLVAFSLKDSSA------------HTVFEISEGLRKFGWIVPAYTMP 408 (498)
Q Consensus 345 ~~~~~~a~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~~------------~~~~~l~~~L~~~G~~v~~~~~~ 408 (498)
++..++.+++++.|++ .+ +...... ...++.+.+++... .+..++.+.|.++|+.+....
T Consensus 325 ~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-- 400 (429)
T 4e77_A 325 ETLTELTDSLATGLRHAAKEEN-IPLVVNH-VGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA-- 400 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCCEEEE-ETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST--
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CceEEEE-eeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC--
Confidence 4555555555555544 34 2211111 45677777754211 122688999999998764321
Q ss_pred CCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHH
Q 010897 409 ANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442 (498)
Q Consensus 409 ~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~ 442 (498)
...+|+ ....|+++++++++.|+++++
T Consensus 401 -----~~~~~~--~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 401 -----FEAGFM--SLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp -----TSCEEC--CTTCCHHHHHHHHHHHHHHHT
T ss_pred -----CCCEEE--eccCCHHHHHHHHHHHHHHHH
Confidence 112444 456799999999999988874
No 229
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.75 E-value=1.1e-17 Score=171.79 Aligned_cols=256 Identities=15% Similarity=0.123 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CchhHHHHHHH-
Q 010897 95 ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEKFAR- 172 (498)
Q Consensus 95 ~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~-~~h~~~~~~~~- 172 (498)
...+++.+++++++|.+... ..+.+++|++|+..++.++.++ +++|++++ +.|.++...++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~----~~i~~~sGt~Ai~~al~al~~~-------------Gd~Vl~~~~~~y~~~~~~~~l 127 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGL----VRPQIISGTHAISTALFGILRP-------------GDELLYITGKPYDTLEEIVGV 127 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEEC----CBTTSCSHHHHHHHHHHTTCCT-------------TCEEEECSSSCCTTHHHHTTS
T ss_pred hhHHHHHHHHHHHhCCCccc----ccceeeCHHHHHHHHHHHhCCC-------------CCEEEEeCCCCchhHHHHHhh
Confidence 34667888899999997521 1112347799998888766432 46899988 88998886654
Q ss_pred ---------HcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEee----ccCCcccccCHHHHHHHHHH--hhcccCC
Q 010897 173 ---------YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEETGW 237 (498)
Q Consensus 173 ---------~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~----~~t~tG~~~~l~~I~~la~~--~~~~~~~ 237 (498)
.+|++++.++++++ +.+|+++|+++++++|++|+++. +++++|..+|+++|.++|++ +
T Consensus 128 ~g~~~~~~~~~G~~~~~v~~~~~-~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~------ 200 (431)
T 3ht4_A 128 RGKGVGSFKEYNIGYNAVPLTEG-GLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP------ 200 (431)
T ss_dssp SSCSSSCSGGGTCEEEECCBCTT-SSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT------
T ss_pred cccccchHHHcCCEEEEeCCCCC-CCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC------
Confidence 47999999999875 88999999999999999999996 66667788999999999999 8
Q ss_pred CceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCccCCC---CCCeEEEEEeCCCCCCccccc--ccCccCCCCC
Q 010897 238 DTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV---YAGVGWVVWRTKDDLPDELVF--HINYLGSDQP 312 (498)
Q Consensus 238 ~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK~l~~---p~g~g~~~~~~~~~l~~~~~~--~~~yl~~~~~ 312 (498)
|+++++|++|+.+..+ .. ...+ ++|.+..+.+|++++ +.| |+++.+. +.+ +.+.. ....++...
T Consensus 201 ~~~livDea~~~~~~~---~~-~~~~---g~Di~~~S~sK~lgg~~~~~G-G~v~~~~-~li-~~l~~~~~~~~~g~~~- 269 (431)
T 3ht4_A 201 DVVVFVDNCYGEFIEE---QE-PCHV---GADLMAGSLIKNPGGGIVKTG-GYIVGKE-QYV-EACAYRLTSPGIGAEA- 269 (431)
T ss_dssp TCEEEEECTTCTTSSS---CC-GGGT---TCSEEEEETTSGGGTTTCSSC-EEEEECH-HHH-HHHHHHHSCTTTTTSC-
T ss_pred CCEEEEeCCChhhccC---CC-cccc---CCeEEEcCccccCCCCCCCce-EEEEecH-HHH-HHHHHHhccCCccccc-
Confidence 9999999999987521 11 1111 479999999999655 556 8887643 221 21111 111111110
Q ss_pred CccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeeCCC--C-ccEEEEEecCCCCCCHH
Q 010897 313 TFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--G-VPLVAFSLKDSSAHTVF 389 (498)
Q Consensus 313 ~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--~-~~~v~f~~~~~~~~~~~ 389 (498)
. .+...... ...++ .....++++..++++++.+.|++++ +++.+.+. + .-++.|.+.+ .....
T Consensus 270 --~--~~~~~~~~--~~~~l-----~~~~~~~~~~~~~a~~l~~~L~~~g-~~v~p~~~~~~~~li~~i~l~~--~~~~~ 335 (431)
T 3ht4_A 270 --G--ASLYSLQE--MYQGF-----FLAPHVAGQALKGAIFTAAFLEKLG-MNTSPAWNAPRTDLIQSVQFDD--KDRMI 335 (431)
T ss_dssp --S--CCCSCSHH--HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-CCEESCTTSCCSSSCCEEECCC--HHHHH
T ss_pred --C--ccHHHHHH--HHhHh-----hhHHHHHHHHHHHHHHHHHHHHhCc-CEecCCCCCCCccEEEEEEeCC--HHHHH
Confidence 0 01110011 11222 3345677888899999999999987 67643321 1 1167777742 23456
Q ss_pred HHHHHHHhcC
Q 010897 390 EISEGLRKFG 399 (498)
Q Consensus 390 ~l~~~L~~~G 399 (498)
++++.|.+..
T Consensus 336 ~~~~~l~~~~ 345 (431)
T 3ht4_A 336 AFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 8888888864
No 230
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.75 E-value=6.8e-17 Score=164.97 Aligned_cols=355 Identities=13% Similarity=0.095 Sum_probs=215.0
Q ss_pred HHHHHHHHHHhhhccCCCCCccccccc------CCChHHHHHHHHHHhccCCC-CCcCCcchHHHHHHHHHHHHHHcCCC
Q 010897 39 KEAAYQVINDELMLDGNPRLNLASFVT------TWMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTP 111 (498)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~~~~~~~------~~~~~~~~~~l~~~~~~n~~-~~~~~~~~~~le~~~~~~la~l~g~~ 111 (498)
++.++...+. +.-+.+|.+||+-++. ++..|.+.++....++.+.. .|....+..++.+.+.+++ +|-.
T Consensus 29 ~d~i~~l~~~-~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~ 104 (420)
T 4h51_A 29 PDVIFDLAKR-AAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNT 104 (420)
T ss_dssp CCHHHHHHHH-HHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC--
T ss_pred CChHHHHHHH-HhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCC
Confidence 3455555433 4456777777765531 13346777777666655432 3666678888888766554 3432
Q ss_pred CCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEE-EEe-cCCccc
Q 010897 112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE-VKL-EEGYYV 189 (498)
Q Consensus 112 ~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~-v~~-~~~~~~ 189 (498)
... +....+.|.|+|.|+..++..+.+.+ ...+++|++++|+|.++....+..|++.+. .+. +++++.
T Consensus 105 ~~~-~~~~~~qt~ggtga~~~a~~~l~~~~---------~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~ 174 (420)
T 4h51_A 105 VEL-ENLVAVQTLSGTGAVSLGAKLLTRVF---------DAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVS 174 (420)
T ss_dssp -CG-GGEEEEEEEHHHHHHHHHHHHHTTTS---------CTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTE
T ss_pred ccc-cccceeeecCchHHHHHHHHHHHHhc---------CCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccC
Confidence 211 12235568899999988876654321 112568999999999999999999998544 333 344578
Q ss_pred cCHHHHHHHhh---hCCeEEEEeeccCCcccc---cCHHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCC-cc-
Q 010897 190 MNPVKAVELVD---ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW- 261 (498)
Q Consensus 190 ~d~~~L~~~i~---~~t~~v~~~~~~t~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~-~~- 261 (498)
+|.+.+.+.+. +++++++.+.++||||.. +.+++|.++|+++ +++++.|++|.++.. ...+. .+
T Consensus 175 ~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~------~~~~~~D~~Y~~~~~--~~~~~~~~~ 246 (420)
T 4h51_A 175 LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK------HHQVFFDSAYQGYAS--GSLDTDAYA 246 (420)
T ss_dssp ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTT--SCHHHHTHH
T ss_pred CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc------CceEeeehhhhhhcc--CCcccchHH
Confidence 89998887775 456778888899999998 5677899999999 999999999998752 11000 00
Q ss_pred --cc--CCCCeeEEEEcCCc-cCCCCCCeEEEEEeCCCCCCcccccc--cCccCCCCCCccccCCCchHHHHHHHHHHHH
Q 010897 262 --DF--RLPLVKSINVSGHK-YGLVYAGVGWVVWRTKDDLPDELVFH--INYLGSDQPTFTLNFSKGSSQIIAQYYQFIR 334 (498)
Q Consensus 262 --~~--~~~~~dsi~~s~hK-~l~~p~g~g~~~~~~~~~l~~~~~~~--~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~ 334 (498)
.+ ....+.. ..|..| +++.+.++||+....+..- ...... ...+.. .. .+. .....+.++...
T Consensus 247 ~~~~~~~~~~~i~-~~s~SK~~~~~G~RvG~~~~~~~~~~-~~~~~~~~l~~~~r--~~----~s~--~p~~~a~~~~~~ 316 (420)
T 4h51_A 247 ARLFARRGIEVLL-AQSFSKNMGLYSERAGTLSLLLKDKT-KRADVKSVMDSLIR--EE----YTC--PPAHGARLAHLI 316 (420)
T ss_dssp HHHHHHTTCCCEE-EEECTTTSCCGGGCEEEEEEECSCHH-HHHHHHHHHHHHHH--TT----TSS--CCHHHHHHHHHH
T ss_pred HHhHHhhCceEEE-EeccccccccccCceEEEEecccCHH-HHHHHHHHHHHhhh--cc----cCc--chHHHHHHHHHH
Confidence 01 1123333 345555 7778899999987654211 000000 000000 00 111 111222222222
Q ss_pred hc--------HHHHHHHHHHHHHHHHHHHHHHhcCCC---eEEeeCCCCccEEEEEecCCCCCCHHHHHHHHHhcCcEee
Q 010897 335 LG--------FEGYKNIMENCMGNARALREGLEKTGR---FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVP 403 (498)
Q Consensus 335 lg--------~~g~~~~~~~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~G~~v~ 403 (498)
+. .+..+.+.++..++++.|.+.|++.+. |..+.+. .++++|. +++. +.++.|+++|+.+.
T Consensus 317 l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q--~GmF~~~-----gls~-e~v~~L~e~~Vy~~ 388 (420)
T 4h51_A 317 LSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQ--IGMFSFL-----GLSK-AQCEYCQNHNIFIT 388 (420)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHC--CSSEEEC-----CCCH-HHHHHHHHTTEECC
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCC--CceEEec-----CcCH-HHHHHHHhCCEEEc
Confidence 22 233456667777889999999998752 3222232 3344441 2454 44588999997542
Q ss_pred eecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 404 AYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 404 ~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
+. -||++. ..+.+.++++.+.|.++++.+.
T Consensus 389 ----~~-------gRis~A-gl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 389 ----VS-------GRANMA-GLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp ----TT-------CEEEGG-GCCHHHHHHHHHHHHHHHC---
T ss_pred ----CC-------CEEEec-cCCHHHHHHHHHHHHHHHHHhh
Confidence 21 299984 4578899999999999987654
No 231
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.72 E-value=3.9e-16 Score=160.26 Aligned_cols=310 Identities=13% Similarity=0.044 Sum_probs=183.9
Q ss_pred ChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHh
Q 010897 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (498)
Q Consensus 68 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~ 147 (498)
.+|.+.+++.+.+..... + ....+++.++.++++++++ .. ..+.+|+||++|+..++.+++.- .
T Consensus 69 ~~p~v~~a~~~~~~~~~~-~---~~~~~~~~~l~~~l~~~~~-~~-----~~v~~~~~g~ea~~~al~~ar~~-~----- 132 (424)
T 2e7u_A 69 AHPKVLARVRETLERGLT-F---GAPSPLEVALAKKVKRAYP-FV-----DLVRFVNSGTEATMSALRLARGY-T----- 132 (424)
T ss_dssp TCHHHHHHHHHHHHTCSC-C---SSCCHHHHHHHHHHHHHCT-TC-----CEEEEESSHHHHHHHHHHHHHHH-H-----
T ss_pred CCHHHHHHHHHHHHhCCC-C---CCCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHh-h-----
Confidence 568899999888876321 1 1234566678888999885 22 23899999999999999875431 1
Q ss_pred cCCCCCCcEEEEcCCchhHHHH-HHHH-------------cCC------eeEEEEecCCccccCHHHHHHHhhh---CCe
Q 010897 148 QGKPYDKPNIVTGANVQVCWEK-FARY-------------FEV------ELKEVKLEEGYYVMNPVKAVELVDE---NTI 204 (498)
Q Consensus 148 ~g~~~~~~~Iv~s~~~h~~~~~-~~~~-------------~g~------~~~~v~~~~~~~~~d~~~L~~~i~~---~t~ 204 (498)
+++.||+.+++|..+.. +... .|+ .+..+| + .|+++|++++++ +++
T Consensus 133 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~-----~-~d~~~le~~l~~~~~~~~ 201 (424)
T 2e7u_A 133 -----GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE-----Y-NDPEGLREVLKRRGEEIA 201 (424)
T ss_dssp -----CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEEC-----T-TCHHHHHHHHHHHGGGEE
T ss_pred -----CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCC-----C-CCHHHHHHHHHhCCCCEE
Confidence 13467666665543222 1111 122 233333 1 489999999873 444
Q ss_pred EEEEeeccCC-cccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCcc
Q 010897 205 CVAAILGSTL-TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKY 278 (498)
Q Consensus 205 ~v~~~~~~t~-tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~ 278 (498)
+| ++.|+++ +|.+.| +++|.++ ++| |+++++|++|+++. ..+....+ ++. ..|.+ +..|.
T Consensus 202 ~v-i~ep~~~~~G~~~~~~~~l~~l~~l-~~~------g~~lI~DEv~~g~~---~g~~~~~~~~~~-~~di~--s~sK~ 267 (424)
T 2e7u_A 202 AI-IFEPVVGNAGVLVPTEDFLKALHEA-KAY------GVLLIADEVMTGFR---LAFGGATELLGL-KPDLV--TLGKI 267 (424)
T ss_dssp EE-EECSSBCTTSCBCCCHHHHHHHHHG-GGG------TCEEEEECTTTTTT---SSTTHHHHHHTC-CCSEE--EECGG
T ss_pred EE-EEeCCCCCCCCcCCCHHHHHHHHHH-HHc------CCEEEEecCccccc---cchhHHHHHhCC-Ccchh--hhhhh
Confidence 44 4556555 898877 9999999 999 99999999999762 11111111 121 24555 44698
Q ss_pred CCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 010897 279 GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL 358 (498)
Q Consensus 279 l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L 358 (498)
+.++.++|+++.+++ .. +.+...... ....+ ++.+.....+..++++.+.. ..+..++..++++++.+.|
T Consensus 268 l~~G~~~G~~~~~~~-~~-~~~~~~~~~----~~~~t--~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L 337 (424)
T 2e7u_A 268 LGGGLPAAAYAGRRE-IM-EKVAPLGPV----YQAGT--LSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGL 337 (424)
T ss_dssp GGTTSSCEEEEECHH-HH-TTBTTTSSB----CCCCT--TCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHH
T ss_pred hhCCcceEEEEEcHH-HH-hhhcccCCc----ccCCC--CCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Confidence 877788999987642 21 211110000 00001 22222344444455554433 1456677777888888888
Q ss_pred hcC----CCeE-EeeCCCCccEEEEEecCCC-----------CCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeec
Q 010897 359 EKT----GRFE-ILSKDVGVPLVAFSLKDSS-----------AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVR 422 (498)
Q Consensus 359 ~~~----~~~~-~~~~~~~~~~v~f~~~~~~-----------~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~ 422 (498)
+++ + +. .+.. ..+++.+.+.+.. ..+..++.+.|.++|+.+.... . ..+|++
T Consensus 338 ~~~~~~~~-~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~--~~~~~~-- 405 (424)
T 2e7u_A 338 KEVLKEKG-LPHTVNR--VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN-----F--EAAFLS-- 405 (424)
T ss_dssp HHHHHHTT-CCCEEEE--ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS-----S--SCEECC--
T ss_pred HHHHHhCC-CceEEEe--eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC-----C--CceEee--
Confidence 764 4 32 1222 3567778774310 1124578999999998764321 1 124544
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 010897 423 EDFSRSLVERLISHIEEV 440 (498)
Q Consensus 423 ~~~t~~~~~~l~~~l~~~ 440 (498)
...++++++++++.|+++
T Consensus 406 ~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 406 VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh
Confidence 567899999988888765
No 232
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.34 E-value=2.2e-16 Score=163.04 Aligned_cols=335 Identities=11% Similarity=-0.005 Sum_probs=191.3
Q ss_pred ccCCCCCccccccc----CCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcC-CCCCCCCCcceeeecCh
Q 010897 52 LDGNPRLNLASFVT----TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGS 126 (498)
Q Consensus 52 ~~~~p~~~~~~~~~----~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~g~ 126 (498)
.+||..+++.+... ...+|.+.+++.+.+...... . ...+.+.++.+.|+++++ .+ ...++++|
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~--~--~~~~~~~~Lae~L~~~~p~~~-------~v~~~nSG 165 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNL--S--TQTENEALFAEAVCDRFPSID-------LVRFTNSG 165 (465)
Confidence 35666655555332 124678888888877663211 1 223444566677888873 32 28899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCch-hHHHHHH---HHcCCeeEEEEecCCccccCHHHHHHHhh--
Q 010897 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ-VCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVD-- 200 (498)
Q Consensus 127 sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h-~~~~~~~---~~~g~~~~~v~~~~~~~~~d~~~L~~~i~-- 200 (498)
+||+..|++.++.. . ++++||+.+.+| .....+. ...|+....+++. + .|+++|+++++
T Consensus 166 seA~~~Aik~ar~~-t----------gr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~---~-~d~~~l~~~l~~~ 230 (465)
T 2yky_A 166 TEANLMALATATAI-T----------GRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV---Y-NDVEGTADLLKRH 230 (465)
Confidence 99999999887532 0 134676665544 4333222 1123311112221 2 47889999997
Q ss_pred -hCCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEc
Q 010897 201 -ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVS 274 (498)
Q Consensus 201 -~~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s 274 (498)
+++++|++....+++|.+.| +++|.++|+++ |+++++|++|+ +.. .+....+ +++ ..|.+ +
T Consensus 231 ~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~-~r~---g~~~a~~~~gv-~pDi~--t 297 (465)
T 2yky_A 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRC------GALLIFDEVMT-SRL---SGGGAQEMLGI-SADLT--T 297 (465)
Confidence 56777776654556898766 99999999999 99999999999 631 1110011 111 24544 4
Q ss_pred CCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 010897 275 GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAL 354 (498)
Q Consensus 275 ~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l 354 (498)
..|++.++.++|+++.+.. .. +.+... ..+......+ ++-+.....+..++|+.+.++ ...++..++.++|
T Consensus 298 ~sK~lg~G~piG~v~~~~~-i~-~~l~~~--~~g~~~~~~T--~~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l 368 (465)
T 2yky_A 298 LGKYIGGGMSFGAFGGRRD-LM-ERFDPA--RDGAFAHAGT--FNNNILTMSAGHAALTQIYTR---QAASDLSASGDRF 368 (465)
Confidence 5698887778898876542 22 221110 0000000111 112122333344455555443 3566777778888
Q ss_pred HHHHhcCC-CeEEeeC-CCCccEEEEEecCCC-----------CCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee
Q 010897 355 REGLEKTG-RFEILSK-DVGVPLVAFSLKDSS-----------AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421 (498)
Q Consensus 355 ~~~L~~~~-~~~~~~~-~~~~~~v~f~~~~~~-----------~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v 421 (498)
.+.|+++. .+.+... .....++.|.+.+.. ......+.+.|.++|+++...... . ++
T Consensus 369 ~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~-------~--~s- 438 (465)
T 2yky_A 369 RANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY-------A--LS- 438 (465)
Confidence 87777652 1222111 113456666654210 011457889999999876432110 1 33
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q 010897 422 REDFSRSLVERLISHIEEVLKEIE 445 (498)
Q Consensus 422 ~~~~t~~~~~~l~~~l~~~l~~l~ 445 (498)
..+|.++++++++.|++++++++
T Consensus 439 -~~~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 439 -LEIADAGRDAFAEALADFIGEQR 461 (465)
Confidence 34688999999999998887653
No 233
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.46 E-value=4.1e-12 Score=130.33 Aligned_cols=333 Identities=16% Similarity=0.077 Sum_probs=186.4
Q ss_pred cCCCCCccccccc----CCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 53 DGNPRLNLASFVT----TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 53 ~~~p~~~~~~~~~----~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
+||..+.+.+... .+.+|.+.+++.+.+......... ...+.++.+.|++++.-. ....++++|||
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~----~~~~~~lae~l~~~~p~~------~~v~f~~SGsE 154 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGH----NLLEGRLARLICERFPQI------EQLRFTNSGTE 154 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSE----ESSHHHHHHHHHHHSTTC------SEEEEESSHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCC----cHHHHHHHHHHHHhCCCC------CEEEEeCchHH
Confidence 4565544433221 234788999998888764322111 223445666678777321 24899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEE-cCCchhHHHHHHHHc---CCeeEEEEecCCccccCHHHHHHHhhh---
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVT-GANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDE--- 201 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~-s~~~h~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~L~~~i~~--- 201 (498)
|++.|++.++... | +.+|+. ....|.......... ........+.. -|++.+++.+++
T Consensus 155 A~e~AiklAr~~t-------g----r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~----nd~~~l~~~l~~~~~ 219 (454)
T 4ao9_A 155 ANLMALTAALHFT-------G----RRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY----NDAQTARAQIERHGP 219 (454)
T ss_dssp HHHHHHHHHHHHH-------T----CCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT----TCHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHhcc-------c----CCeEEEEeCCcCCccccccccccCccCCCCcccCCC----chHHHHHHHHhhcCC
Confidence 9999999987642 2 356654 445554322111110 11112222211 478889888875
Q ss_pred CCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccccCCCCeeEEEEcCCc
Q 010897 202 NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHK 277 (498)
Q Consensus 202 ~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~~~~~~~dsi~~s~hK 277 (498)
++.+|++--.....|.+.| +++|.++|++| |+++++|+++.|-...+... ..+++ ..|.+++ -|
T Consensus 220 ~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~------g~lLI~DEV~tGR~G~~~a~---e~~gv-~PDi~t~--gK 287 (454)
T 4ao9_A 220 EIAVVLVEPMQGASGCIPGQPDFLQALRESATQV------GALLVFDEVMTSRLAPHGLA---NKLGI-RSDLTTL--GK 287 (454)
T ss_dssp GEEEEEECSEESTTTCEECCHHHHHHHHHHHHHH------TCEEEEECTTGGGGSTTCHH---HHHTC-CCSEEEE--EG
T ss_pred ceEEEEeccccCCCCccCCchhhHHHHHHHHhhc------CCEEEEECCCcCCCccccch---hccCC-CCcEEEe--cc
Confidence 3455655444455677777 99999999999 99999999997532111100 01222 2466655 46
Q ss_pred cCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 010897 278 YGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREG 357 (498)
Q Consensus 278 ~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~ 357 (498)
.+.++..+|.++.+.+ .. +.+.... +......| ++-++..+.+..++|+.+..++ ..++..++.++|.+.
T Consensus 288 ~lggG~Piga~~~~~e-i~-~~~~~~~---~~~~h~~T--~~gnPla~AAala~L~~l~~~~---~~~~~~~~g~~l~~~ 357 (454)
T 4ao9_A 288 YIGGGMSFGAFGGRAD-VM-ALFDPRT---GPLAHSGT--FNNNVMTMAAGYAGLTKLFTPE---AAGALAERGEALRAR 357 (454)
T ss_dssp GGGTTSSCEEEEECHH-HH-GGGCTTT---CSCCCCCT--TTTCHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHH
T ss_pred ccCCCCcceeeeeHHH-HH-HHHhhcc---CCccccCC--CCCCHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHH
Confidence 6666677888876642 11 1111100 00001112 2333456666677777776543 345555566666666
Q ss_pred Hhc----CCC-eEEeeCCCCccEEEEEecCCC--------CCC---HHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee
Q 010897 358 LEK----TGR-FEILSKDVGVPLVAFSLKDSS--------AHT---VFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421 (498)
Q Consensus 358 L~~----~~~-~~~~~~~~~~~~v~f~~~~~~--------~~~---~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v 421 (498)
|++ .+- .++... ..++.+.+...+ ..+ ...+...|.++|+++. |. + ++.+
T Consensus 358 L~~l~~~~~~~~~vrg~---G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~----p~---~----~~~~ 423 (454)
T 4ao9_A 358 LNALCANEGVAMQFTGI---GSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSS----PR---G----FVVL 423 (454)
T ss_dssp HHHHHHHHTBSCEEEEE---TTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECC----TT---C----EEEC
T ss_pred HHHHHhhCCCCEEEeee---ceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEc----CC---C----CEEE
Confidence 654 331 122211 234444442211 112 2456778899998752 21 1 2334
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHc
Q 010897 422 REDFSRSLVERLISHIEEVLKEIES 446 (498)
Q Consensus 422 ~~~~t~~~~~~l~~~l~~~l~~l~~ 446 (498)
...+|++++|+++++|++++++...
T Consensus 424 s~~~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 424 SLPLTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred eCCCCHHHHHHHHHHHHHHHHhccc
Confidence 4567999999999999999987543
No 234
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.40 E-value=2.3e-10 Score=118.23 Aligned_cols=355 Identities=13% Similarity=0.008 Sum_probs=194.5
Q ss_pred cCCCCCcccccc----cCCChHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhH
Q 010897 53 DGNPRLNLASFV----TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (498)
Q Consensus 53 ~~~p~~~~~~~~----~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~se 128 (498)
+||..+.+.+.. -.+.+|.+.+++.+.+++.......+....+.+.++.+.|.++...+. ..+.++++|||
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGsE 139 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS-----GRVFYTNSGSE 139 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS-----CEEEEESSHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc-----cEEEEeCchHH
Confidence 466554433322 124578898998888876433222222233444467777888875443 24899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEE-cCCchhHHHHHHHHcCC-----------eeEEEEecC-----Ccccc-
Q 010897 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVT-GANVQVCWEKFARYFEV-----------ELKEVKLEE-----GYYVM- 190 (498)
Q Consensus 129 a~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~-s~~~h~~~~~~~~~~g~-----------~~~~v~~~~-----~~~~~- 190 (498)
|+..|++.++..+.. .|.+ ++.+||. ....|....-++...|- .+..++... +....
T Consensus 140 A~e~AiKlAr~~~~~----~g~~-~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 214 (473)
T 4e3q_A 140 ANDTMVKMLWFLHAA----EGKP-QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETE 214 (473)
T ss_dssp HHHHHHHHHHHHHHH----TTCT-TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCH
T ss_pred HHHHHHHHHHHHHHh----cCCC-CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchh
Confidence 999999988754432 2322 2345554 44566544444443331 234444321 00001
Q ss_pred ------CHHHHHHHhhh----CCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccC
Q 010897 191 ------NPVKAVELVDE----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256 (498)
Q Consensus 191 ------d~~~L~~~i~~----~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~ 256 (498)
..+++++.|.. +..+|++--.....|.+.| +++|.++|++| |+++++|+++.||.- ..
T Consensus 215 ~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~------gilLI~DEV~tGfGR--tG 286 (473)
T 4e3q_A 215 EQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY------DIPVISDEVICGFGR--TG 286 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCCEEEECTTTSSST--TS
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc------ceEEeccCccccCCc--cc
Confidence 12345555542 2344544433334465533 78999999999 999999999988631 11
Q ss_pred CCCccc-cCCCCeeEEEEcCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHh
Q 010897 257 PDLEWD-FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL 335 (498)
Q Consensus 257 ~~~~~~-~~~~~~dsi~~s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~l 335 (498)
.-.... +++ ..|.+++ ++..+.+...+|.++.+++ . .+.+..............| ++-++....+..+.|+.+
T Consensus 287 ~~fa~e~~gv-~PDi~t~-~K~l~gG~~Pl~av~~~~~-i-~~~~~~~~~~~~~~~hg~T--~~Gnpla~Aaala~L~~i 360 (473)
T 4e3q_A 287 NTWGCVTYDF-TPDAIIS-SKNLTAGFFPMGAVILGPE-L-SKRLETAIEAIEEFPHGFT--ASGHPVGCAIALKAIDVV 360 (473)
T ss_dssp SSCHHHHTTC-CCSEEEE-CGGGGTTSSCCEEEEECHH-H-HHHHHHHHHHHSCCCCCCT--TTTCHHHHHHHHHHHHHH
T ss_pred chhHHHhcCC-CCChHHh-cccccCCCCCcccccccHH-H-HHHhccccccccccccCCC--CCCCcchhhhhhhhhhhh
Confidence 111111 122 2576655 3334444477888887653 1 1111110011111111122 233335556666777777
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEeeCCCCccEEEEEecCCC----CCC-----HHHHHHHHHhcCcEee
Q 010897 336 GFEGYKNIMENCMGNARALREGLEKT---GRFEILSKDVGVPLVAFSLKDSS----AHT-----VFEISEGLRKFGWIVP 403 (498)
Q Consensus 336 g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~----~~~-----~~~l~~~L~~~G~~v~ 403 (498)
.++++ .++..++.++|.+.|+++ +.+.-+.. ..-++.+.+..+. ..+ ...+.+.+.++|+++.
T Consensus 361 ~~~~l---~~~~~~~g~~l~~~L~~l~~~~~v~~vRG--~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~ 435 (473)
T 4e3q_A 361 MNEGL---AENVRRLAPRFEERLKHIAERPNIGEYRG--IGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICR 435 (473)
T ss_dssp HHSSH---HHHHHHHHHHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECE
T ss_pred ccccH---HHHHHHHHHHHHHHHHHHhcCCCeeEEee--cceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEE
Confidence 66554 455556667777766654 33221111 1234556553211 011 4578899999998864
Q ss_pred eecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 404 AYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 404 ~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.. ...+|++--..+|.+++|++++.|+++++++
T Consensus 436 ~~--------g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 436 PL--------GQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp EE--------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ec--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 32 1358877555679999999999999998765
No 235
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.34 E-value=4.2e-09 Score=108.31 Aligned_cols=330 Identities=12% Similarity=-0.009 Sum_probs=183.7
Q ss_pred CChHHHHHHHHHHhccCCCC-CcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHH
Q 010897 67 WMEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (498)
Q Consensus 67 ~~~~~~~~~l~~~~~~n~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~ 145 (498)
+.+|.+.+++.+.+.+.... ....+ .+.+.++.+.|.+++..+. .....++++||||+..|++.++...
T Consensus 80 h~~p~v~~Ai~~q~~~~~~~~~~~~~--~~~~~~lae~L~~~~p~~~----~~~v~f~~sGsEA~e~AlklAr~~t---- 149 (456)
T 4atq_A 80 ASDPAVVAAVQEAAAHFTHTCFMVTP--YEGYVAVTEQLNRLTPGDH----AKRTVLFNSGAEAVENAVKVARLAT---- 149 (456)
T ss_dssp TTCHHHHHHHHHHHHHCSCCTTTTSC--CHHHHHHHHHHHHHSSCSS----CEEEEEESSHHHHHHHHHHHHHHHH----
T ss_pred CCCHHHHHHHHHHHhhccCcccCccC--cHHHHHHHHHHHHhCCCCC----CcEEEEeCChHHHHHHHHHHHhhhh----
Confidence 34688888888877663321 11112 2233355666888774321 1237889999999999999987542
Q ss_pred HhcCCCCCCcEEEEc-CCchhHHHHHHHHcC-------------CeeEEEEecCC-----ccccCHHHHHHHh-------
Q 010897 146 KEQGKPYDKPNIVTG-ANVQVCWEKFARYFE-------------VELKEVKLEEG-----YYVMNPVKAVELV------- 199 (498)
Q Consensus 146 ~~~g~~~~~~~Iv~s-~~~h~~~~~~~~~~g-------------~~~~~v~~~~~-----~~~~d~~~L~~~i------- 199 (498)
| +.+|+.- ...|....-+....+ -.+..+|.... ....+.+.+++.+
T Consensus 150 ---~----r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 222 (456)
T 4atq_A 150 ---G----RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQI 222 (456)
T ss_dssp ---C----CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHT
T ss_pred ---c----CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhh
Confidence 2 3466654 455654443333322 13556664310 0112233333333
Q ss_pred hh-CCeEEEEeeccCCcccccC----HHHHHHHHHHhhcccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEE
Q 010897 200 DE-NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINV 273 (498)
Q Consensus 200 ~~-~t~~v~~~~~~t~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~ 273 (498)
.. +..+|++--.....|.+.| +++|.++|++| |+++++|+++.|+.- ...-..+. +++ ..|.+++
T Consensus 223 ~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~------gillI~DEV~tG~GR--tG~~~a~e~~gv-~PDivt~ 293 (456)
T 4atq_A 223 GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK------GIVFIADEVQSGFCR--TGEWFAVDHEGV-VPDIITM 293 (456)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTC-CCSEEEE
T ss_pred cCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc------CCceEecccccccCC--ccccccccccCC-CCchhhh
Confidence 22 3444554433333465543 89999999999 999999999987521 11111111 222 2587776
Q ss_pred cCCccCCCCCCeEEEEEeCCCCCCcccccccCccCCCCCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 010897 274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA 353 (498)
Q Consensus 274 s~hK~l~~p~g~g~~~~~~~~~l~~~~~~~~~yl~~~~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~~~a~~ 353 (498)
+ |.+.++..+|.++.+.+- . +.+ .+... ..| ++-+.....+..+.|+.+.++++. ++..++.++
T Consensus 294 g--K~lggg~P~~av~~~~~i-~-~~~--~~~~~-----~~T--f~gnpla~aaala~L~~i~~~~l~---~~~~~~g~~ 357 (456)
T 4atq_A 294 A--KGIAGGLPLSAITGRADL-L-DAV--HPGGL-----GGT--YGGNPVACAAALAAIDTMEQHDLN---GRARHIEEL 357 (456)
T ss_dssp C--GGGGTTSSCEEEEEEHHH-H-TTS--CTTSS-----CCS--SSSCHHHHHHHHHHHHHHHHTTHH---HHHHHHHHH
T ss_pred h--hcccCcCCceeeEecHHH-H-hcc--cccCC-----CCC--CCCChHHHHhhHHHHHHHhhccHH---HHHHHHHHH
Confidence 5 556666778888877531 1 111 11111 112 233335666677777777666543 444445555
Q ss_pred HHHHHhc----CCC--eEEeeCCC-CccEEEEEecCCCC--CC---HHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEee
Q 010897 354 LREGLEK----TGR--FEILSKDV-GVPLVAFSLKDSSA--HT---VFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV 421 (498)
Q Consensus 354 l~~~L~~----~~~--~~~~~~~~-~~~~v~f~~~~~~~--~~---~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v 421 (498)
|.+.|++ .+. ..++.+-. ..-++.+.+..+.. .+ ...+.+++.++|+++... ....+++|+.-
T Consensus 358 l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~-----g~~~~~irl~P 432 (456)
T 4atq_A 358 ALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC-----GTYGNVIRLLP 432 (456)
T ss_dssp HHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE-----CTTSCEEEECC
T ss_pred HHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec-----CCCCCEEEEEC
Confidence 5555543 321 11222111 22355666643211 11 357888999999886432 12345799886
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 010897 422 REDFSRSLVERLISHIEEVLKE 443 (498)
Q Consensus 422 ~~~~t~~~~~~l~~~l~~~l~~ 443 (498)
-..+|++++|++++.|+++++.
T Consensus 433 pL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 433 PLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 6667999999999999988864
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.23 E-value=2.1e-10 Score=126.37 Aligned_cols=341 Identities=11% Similarity=-0.016 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHhccCCCCCcCCcchHHHHHHHHHHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhc
Q 010897 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ 148 (498)
Q Consensus 69 ~~~~~~~l~~~~~~n~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~ 148 (498)
+|++.+++.+.+.+-.+... .....+...++.+.|+++++-+. .....++++|||||-.|++.+++.|... .
T Consensus 399 ~p~i~~Ai~~Q~~~l~h~~~-~~~~~~~~~~Lae~L~~~~p~~~----l~~vff~~SGSeA~E~AlK~A~r~~~~~---~ 470 (831)
T 4a0g_A 399 QAELAREMGYTAARFGHVMF-PENVYEPALKCAELLLDGVGKGW----ASRVYFSDNGSTAIEIALKMAFRKFCVD---H 470 (831)
T ss_dssp HHHHHHHHHHHHHHHSSCCC-TTEECHHHHHHHHHHHHTTTTTT----CCEEEEESSHHHHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHHHHhhcccccc-cccCCHHHHHHHHHHHHhCCCCC----CCEEEECCChhHHHHHHHHHHHHHHHhh---c
Confidence 67888888877766332211 11122333356667888876321 0238999999999999999885544321 1
Q ss_pred CCCC-------CCcEEEE-cCCchhHHHHHHHHcCCe----------------------------eEEEEecCCccc---
Q 010897 149 GKPY-------DKPNIVT-GANVQVCWEKFARYFEVE----------------------------LKEVKLEEGYYV--- 189 (498)
Q Consensus 149 g~~~-------~~~~Iv~-s~~~h~~~~~~~~~~g~~----------------------------~~~v~~~~~~~~--- 189 (498)
|.+. ++.+||. ....|....-++...|.. +..+++... ++
T Consensus 471 g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~-~~~~~ 549 (831)
T 4a0g_A 471 NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES-FSEIA 549 (831)
T ss_dssp TC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTT-SCCCC
T ss_pred CCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcc-ccccc
Confidence 2110 2345654 556776666666655421 011222110 00
Q ss_pred ------cC------------------HHHHHHHhhh-------CCeEEEEeec--cCCcccccC----HHHHHHHHHHhh
Q 010897 190 ------MN------------------PVKAVELVDE-------NTICVAAILG--STLTGEFED----VKLLHDLLTKKN 232 (498)
Q Consensus 190 ------~d------------------~~~L~~~i~~-------~t~~v~~~~~--~t~tG~~~~----l~~I~~la~~~~ 232 (498)
-| .+.|++.|.+ ...+.+++-| ....|.+.+ +++|.++|++|
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~- 628 (831)
T 4a0g_A 550 PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR- 628 (831)
T ss_dssp SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT-
T ss_pred cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc-
Confidence 01 2567777752 2334444444 345566654 89999999999
Q ss_pred cccCCCceEEEecCcccccccccCCCCccc-cCCCCeeEEEEcCCccCCCC-CCeEEEEEeCCCCCCcccccccCccCCC
Q 010897 233 EETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSD 310 (498)
Q Consensus 233 ~~~~~~~~l~vD~A~~g~~~~~~~~~~~~~-~~~~~~dsi~~s~hK~l~~p-~g~g~~~~~~~~~l~~~~~~~~~yl~~~ 310 (498)
|+++++|+++.||.- ........ +++ ..|++++ -|.+.++ ..+|+++.+++ +.+.+..... ....
T Consensus 629 -----gilLI~DEV~tGfGR--tG~~fa~e~~gv-~PDiitl--sK~L~gG~~Plgav~~~~~--i~~~~~~~~~-~~~~ 695 (831)
T 4a0g_A 629 -----KIPVIFDEVFTGFWR--LGVETTTELLGC-KPDIACF--AKLLTGGMVPLAVTLATDA--VFDSFSGDSK-LKAL 695 (831)
T ss_dssp -----TCCEEEECTTTTTTT--TSBSSTHHHHSS-CCSEEEE--CGGGGTTSSCCEEEEECHH--HHHTTCSSCG-GGSC
T ss_pred -----CCeEEEEcCcccccc--CCCchhhHhcCC-CCcEEEE--ecccccCccCcEEEEECHH--HHHHHhcccc-cccc
Confidence 999999999987621 11111111 122 2466654 4666554 57788887653 1111110000 0000
Q ss_pred CCCccccCCCchHHHHHHHHHHHHhcHHHHHHHHHHHH-HH----HHHHHHHHhcCCCeEEeeCCCCccEEEEEecCCC-
Q 010897 311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCM-GN----ARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS- 384 (498)
Q Consensus 311 ~~~~~l~~sr~~~~~~a~~~~l~~lg~~g~~~~~~~~~-~~----a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~- 384 (498)
...+| ++-+.....+..++|+.+..+.+.+.+.+.. .+ .+.+.+.+++.+.+.-+.. ...++.+.+..+.
T Consensus 696 ~hg~T--~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg--~Gl~~~iel~~~~~ 771 (831)
T 4a0g_A 696 LHGHS--YSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV--IGTLFALELKADAS 771 (831)
T ss_dssp CCCCT--TTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE--ETTEEEEEEC----
T ss_pred eeecC--CcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee--cccEEEEEEecCcc
Confidence 01112 2333345555566666553333322221111 11 2235556667775543322 3456666664221
Q ss_pred -----CCCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 010897 385 -----AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444 (498)
Q Consensus 385 -----~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l~~l 444 (498)
.....++.++|.++|+++... ...+|++....+|.++++++++.|+++++++
T Consensus 772 ~~~~~~~~a~~~~~~l~e~Gv~v~p~--------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 772 NSGYASLYAKSLLIMLREDGIFTRPL--------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -----CHHHHHHHHHHHHTTEECCCB--------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ccccchHHHHHHHHHHHHCCcEEEec--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 112457889999999886421 2579999888889999999999999887643
No 237
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=38.38 E-value=20 Score=31.30 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=37.7
Q ss_pred CHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEEEecCccc
Q 010897 191 NPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (498)
Q Consensus 191 d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~A~~g 249 (498)
|.+.|+++++.....|++. +|.+..++++.+.++++++ -+++|+|-..|-
T Consensus 18 ~~~~l~~al~s~~~~ifll-----~g~i~~l~~~v~~lk~~~K----~v~Vh~Dli~Gl 67 (192)
T 3kts_A 18 NQKDMEKILELDLTYMVML-----ETHVAQLKALVKYAQAGGK----KVLLHADLVNGL 67 (192)
T ss_dssp SSHHHHHHTTSSCCEEEEC-----SEETTTHHHHHHHHHHTTC----EEEEEGGGEETC
T ss_pred CHHHHHHHHcCCCCEEEEe-----cCcHHHHHHHHHHHHHcCC----eEEEecCchhcc
Confidence 5788999988766655543 3566789999999999954 577888877664
No 238
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=37.71 E-value=1.3e+02 Score=22.63 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=44.0
Q ss_pred eEEeeCCCCccEEEEEecCCCCCC-HHHHHHHHHh-cCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHHHH
Q 010897 364 FEILSKDVGVPLVAFSLKDSSAHT-VFEISEGLRK-FGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441 (498)
Q Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~-~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~~l 441 (498)
++++... -+...|.+.+.+ .+ ...|...|.+ .++.+.+|..|-.....-.+||-+....+.. +.|.++++.+.
T Consensus 3 ikvi~k~--~n~~~f~i~~ED-HTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~--~al~~a~~~l~ 77 (92)
T 2pa8_L 3 IRILKSE--SNYLELEIEGED-HTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPK--DALLKAIENIR 77 (92)
T ss_dssp EEEEEEE--TTEEEEEEETCC-HHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHH--HHHHHHHHHHH
T ss_pred eEEEecC--CCeEEEEEecCc-hhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHH--HHHHHHHHHHH
Confidence 4455542 345566665432 11 2355555555 5777788887765677788999886554442 33344444444
Q ss_pred HHHHc
Q 010897 442 KEIES 446 (498)
Q Consensus 442 ~~l~~ 446 (498)
+.++.
T Consensus 78 ~~~~~ 82 (92)
T 2pa8_L 78 GMTSH 82 (92)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 239
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=36.71 E-value=1.5e+02 Score=23.28 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=48.2
Q ss_pred HHhcCCCeEEeeCCCCccEEEEEecCCCCCC-HHHHHHHHHh-cCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHH
Q 010897 357 GLEKTGRFEILSKDVGVPLVAFSLKDSSAHT-VFEISEGLRK-FGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLI 434 (498)
Q Consensus 357 ~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-~~~l~~~L~~-~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~ 434 (498)
+.+++. +++.... -+...|.+.+.+ .+ ...|...|.+ .++.+.+|..|-.....-.|||-+.... -.+.|.
T Consensus 7 ~~~kme-iki~~k~--~n~~~f~i~~ED-HTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~---p~eaL~ 79 (115)
T 1xpp_A 7 RTAESS-LRVISKE--KNSITVEMINYD-NTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK---PQSAIK 79 (115)
T ss_dssp --CCCE-EEEEEEC--SSEEEEEEESCC-HHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSC---HHHHHH
T ss_pred cccceE-EEEEcCC--CCEEEEEEeCCC-chhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCC---hHHHHH
Confidence 334444 6777653 455667665432 11 2345555544 5777888888765677778999886543 233444
Q ss_pred HHHHHHHHHHHcCccc
Q 010897 435 SHIEEVLKEIESLPSR 450 (498)
Q Consensus 435 ~~l~~~l~~l~~~~~~ 450 (498)
++++.+.+.++...+.
T Consensus 80 ~al~~L~~~~~~l~~~ 95 (115)
T 1xpp_A 80 RAVRKLSKLYEDLGTQ 95 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555444444333
No 240
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=36.44 E-value=2.1e+02 Score=25.68 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=52.1
Q ss_pred EEEE-cCCchh-HHHHHHHHcCCeeEEEEecC-------CccccCHHHHHHHhhh-CCeEEEEeeccCCcccccCHHHHH
Q 010897 156 NIVT-GANVQV-CWEKFARYFEVELKEVKLEE-------GYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLH 225 (498)
Q Consensus 156 ~Iv~-s~~~h~-~~~~~~~~~g~~~~~v~~~~-------~~~~~d~~~L~~~i~~-~t~~v~~~~~~t~tG~~~~l~~I~ 225 (498)
.|+. .+..+. .+....+..+.++..+++.. +.+.|++++..++++. +++.++.++-.+..-.-.+.+++.
T Consensus 162 ~i~~~GDt~~~~~~~~~~~~~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~l~~~~vi~~H~~~~~~~~~~~~~l~ 241 (264)
T 3rpc_A 162 TVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVR 241 (264)
T ss_dssp CEEECCSCCSCHHHHHHHHHHCCSEEEEECSCBCBTTCSSCSSCCHHHHHHHHHHCTTSEEEEESCSSSTTBCSCHHHHH
T ss_pred EEEEECCcCchHHHHHHHHHhCCCEEEEecCccccccccCCcccCHHHHHHHHHhCCcCeEEEEccccccccccCHHHHH
Confidence 4544 444444 45555666788988888862 3478999887776654 567788888766443446788999
Q ss_pred HHHHHh
Q 010897 226 DLLTKK 231 (498)
Q Consensus 226 ~la~~~ 231 (498)
+.+++.
T Consensus 242 ~~~~~~ 247 (264)
T 3rpc_A 242 KFIKGN 247 (264)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 988877
No 241
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=31.69 E-value=1.9e+02 Score=25.92 Aligned_cols=77 Identities=9% Similarity=0.011 Sum_probs=42.3
Q ss_pred EEEcCCchh-------HHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHH
Q 010897 157 IVTGANVQV-------CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT 229 (498)
Q Consensus 157 Iv~s~~~h~-------~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~ 229 (498)
++++...+. .+.++++..|.++..+..+.+ ..-..+.++.++..+..+|++... .. +.+.++.+.++
T Consensus 13 ~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~-~~----~~~~~~~~~~~ 86 (293)
T 3l6u_A 13 FTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS-RISEREQILEFVHLKVDAIFITTL-DD----VYIGSAIEEAK 86 (293)
T ss_dssp EEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHHHHHHHHTTCSEEEEECS-CT----TTTHHHHHHHH
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEecC-Ch----HHHHHHHHHHH
Confidence 455654443 344566777888887765432 111224556666667777776533 22 23445555666
Q ss_pred HhhcccCCCceEE-Eec
Q 010897 230 KKNEETGWDTPIH-VDA 245 (498)
Q Consensus 230 ~~~~~~~~~~~l~-vD~ 245 (498)
+. +++++ +|.
T Consensus 87 ~~------~iPvV~~~~ 97 (293)
T 3l6u_A 87 KA------GIPVFAIDR 97 (293)
T ss_dssp HT------TCCEEEESS
T ss_pred Hc------CCCEEEecC
Confidence 66 67654 444
No 242
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=29.89 E-value=50 Score=31.69 Aligned_cols=75 Identities=19% Similarity=0.101 Sum_probs=47.2
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHh
Q 010897 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV 199 (498)
Q Consensus 120 ~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i 199 (498)
++-+++|..+.-+|..+.+. |. +-.|++|+..-..-...++.+|++++.++...+ ...+.....+..
T Consensus 90 Vv~aSsGN~g~alA~~aa~~---------G~---~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~-~~~~~~~~~~~~ 156 (344)
T 3vc3_A 90 LIEPTSGNMGISMAFMAAMK---------GY---KMVLTMPSYTSLERRVTMRAFGAELILTDPAKG-MGGTVKKAYELL 156 (344)
T ss_dssp EEEECSSHHHHHHHHHHHHH---------TC---EEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH-HHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHc---------CC---cEEEEECCCChHHHHHHHHHcCCEEEEECCCCc-chHHHHHHHHHH
Confidence 55566778887777666543 22 248899998877888888999999998875432 222233333444
Q ss_pred hhCCeEEE
Q 010897 200 DENTICVA 207 (498)
Q Consensus 200 ~~~t~~v~ 207 (498)
.+.+...+
T Consensus 157 ~~~~~~~~ 164 (344)
T 3vc3_A 157 ENTPNAHM 164 (344)
T ss_dssp HHSTTEEC
T ss_pred hhccCcee
Confidence 44444443
No 243
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=29.75 E-value=52 Score=23.87 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 386 HTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 386 ~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
.+...+..+|...|+-.. .. .+..+.||-+++..++++.+.+.+.|+.
T Consensus 21 ~~A~~l~~~L~~~G~~a~--i~----~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 21 EQAETVRAQLAFEGFDSK--IT----TNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp HHHHHHHHHHHHHTCCEE--EE----ECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeE--EE----eCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 367889999999886422 11 1234578888877788877765555543
No 244
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=27.08 E-value=68 Score=22.93 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhcCcEeeeecCCCCCCCeeEEEEeecCCCCHHHHHHHHHHHHH
Q 010897 386 HTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEE 439 (498)
Q Consensus 386 ~~~~~l~~~L~~~G~~v~~~~~~~~~~~~~~lRv~v~~~~t~~~~~~l~~~l~~ 439 (498)
.+...+..+|...|+-.. .. .+..+.||.+++..++++.+.+++.|+.
T Consensus 21 ~~A~~~~~~L~~~g~~~~--i~----~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 21 ANADSLASNAEAKGFDSI--VL----LKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp HHHHHHHHHHHHHTCCEE--EE----EETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeE--Ee----cCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 357889999999885421 11 1234578888877788888766665554
No 245
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=24.05 E-value=3.1e+02 Score=25.05 Aligned_cols=85 Identities=9% Similarity=-0.001 Sum_probs=49.1
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHHHHh
Q 010897 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV 199 (498)
Q Consensus 120 ~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i 199 (498)
.++.+|++.++=.++.-..-. +| -+|++.+..--..++.++.+|.+...+.+|- -|.+++++++
T Consensus 31 valVTGas~GIG~aiA~~la~-------~G-----a~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv----~~~~~v~~~~ 94 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRFVA-------EG-----ARVFITGRRKDVLDAAIAEIGGGAVGIQADS----ANLAELDRLY 94 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHH-------TT-----CEEEEEESCHHHHHHHHHHHCTTCEEEECCT----TCHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHH-------CC-----CEEEEEECCHHHHHHHHHHcCCCeEEEEecC----CCHHHHHHHH
Confidence 555566776764443222111 23 4666666566677777777888888888763 2455555544
Q ss_pred hh------CCeEEEEeeccCCcccccC
Q 010897 200 DE------NTICVAAILGSTLTGEFED 220 (498)
Q Consensus 200 ~~------~t~~v~~~~~~t~tG~~~~ 220 (498)
+. +...++-+.|....+.+.+
T Consensus 95 ~~~~~~~G~iDiLVNNAG~~~~~~~~~ 121 (273)
T 4fgs_A 95 EKVKAEAGRIDVLFVNAGGGSMLPLGE 121 (273)
T ss_dssp HHHHHHHSCEEEEEECCCCCCCCCTTS
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhh
Confidence 32 2345666667666666643
No 246
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.63 E-value=2.4e+02 Score=25.76 Aligned_cols=67 Identities=4% Similarity=-0.117 Sum_probs=38.7
Q ss_pred HHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEE-Eec
Q 010897 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH-VDA 245 (498)
Q Consensus 167 ~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~-vD~ 245 (498)
+.+.++..|.++.....+.+ ..--.+.++.++..+..+|++... .+ .......+.+++. +++++ +|.
T Consensus 25 i~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~~~~~~vdgiIi~~~-~~----~~~~~~~~~~~~~------giPvV~~~~ 92 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYADDD-IPNQLSQIENMVTKGVKVLVIASI-DG----TTLSDVLKQAGEQ------GIKVIAYDR 92 (330)
T ss_dssp HHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHHTCSEEEECCS-SG----GGGHHHHHHHHHT------TCEEEEESS
T ss_pred HHHHHHHcCCEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEEEcC-Cc----hhHHHHHHHHHHC------CCCEEEECC
Confidence 44567778888777764322 112234566677777777776533 22 2345556666777 77664 444
No 247
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=23.39 E-value=2.6e+02 Score=25.41 Aligned_cols=68 Identities=6% Similarity=-0.054 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCeeEEEEecCCccccCHHHHHHHhhhCCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEE-Ee
Q 010897 166 CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH-VD 244 (498)
Q Consensus 166 ~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~-vD 244 (498)
.+...++..|..+.......+ ..-..+.++.++..+..+|++... .+. .+.+..+.+++. +++++ +|
T Consensus 23 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiIi~~~-~~~----~~~~~~~~~~~~------~iPvV~~~ 90 (313)
T 3m9w_A 23 IFVKKAESLGAKVFVQSANGN-EETQMSQIENMINRGVDVLVIIPY-NGQ----VLSNVVKEAKQE------GIKVLAYD 90 (313)
T ss_dssp HHHHHHHHTSCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEEECS-STT----SCHHHHHHHHTT------TCEEEEES
T ss_pred HHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEeCC-Chh----hhHHHHHHHHHC------CCeEEEEC
Confidence 445667778888877765332 111224456666667777766543 221 234555666667 77664 44
Q ss_pred c
Q 010897 245 A 245 (498)
Q Consensus 245 ~ 245 (498)
.
T Consensus 91 ~ 91 (313)
T 3m9w_A 91 R 91 (313)
T ss_dssp S
T ss_pred C
Confidence 3
No 248
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=22.12 E-value=1.5e+02 Score=25.97 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=28.4
Q ss_pred CCeEEEEeeccCCcccccCHHHHHHHHHHhhcccCCCceEE
Q 010897 202 NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (498)
Q Consensus 202 ~t~~v~~~~~~t~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (498)
.|.+|++-.-.+..|......++.+++++| ++.++
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h------~l~ii 193 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKH------GIKII 193 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHH------TCCEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHc------CCcEE
Confidence 566666555547889999999999999999 88765
No 249
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=21.96 E-value=1.2e+02 Score=30.05 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=35.1
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEe
Q 010897 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183 (498)
Q Consensus 120 ~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~ 183 (498)
++-.++|..+.-+|..+.+. |. +..|++|+..-..-...++.+|++++.++.
T Consensus 178 VV~aSsGNhG~AlA~aAa~~---------Gl---~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 178 LVEPTSGNTGIGLAFIAASR---------GY---RLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp EEEECSSHHHHHHHHHHHHH---------TC---EEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred EEEECCCHHHHHHHHHHHHh---------CC---EEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34445666666566554432 32 247888887766777788999999988874
No 250
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=21.19 E-value=3.7e+02 Score=22.63 Aligned_cols=84 Identities=14% Similarity=0.245 Sum_probs=51.4
Q ss_pred HHHHHHcCCCCCCCCCcceeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCc-EEEEcCCchhHHHHHHHHcCCeeEE
Q 010897 102 NMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP-NIVTGANVQVCWEKFARYFEVELKE 180 (498)
Q Consensus 102 ~~la~l~g~~~~~~~~~~~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~-~Iv~s~~~h~~~~~~~~~~g~~~~~ 180 (498)
...|+.||++ +++-++..+.+.-.+.-..++| . ++ .|- ..+|.+..+-.|..++.
T Consensus 25 ~LtARAfGA~--------~iil~~~D~~v~esv~dV~~rw------G-----G~F~ve-----~~~w~~~i~~w~G~VVH 80 (178)
T 2o3a_A 25 ALTARAFGAK--------GIYFDTEDKSVFESVRDVVERW------G-----GDFFIK-----AVSWKKLLREFDGLKVH 80 (178)
T ss_dssp HHHHHHTTCS--------EEEESSCCHHHHHHHHHHHHHH------C-----SCCEEE-----ECCHHHHHHHCCSEEEE
T ss_pred HHHHHHhCCC--------eeEEeCCCHHHHHHHHHHHHhc------C-----CceEEE-----ecCHHHHHHHcCCEEEE
Confidence 3478889986 4555555888878887777777 1 23 333 24566666666877777
Q ss_pred EEecCCccccCHHHHHHHhhhCCeEEEEeeccC
Q 010897 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGST 213 (498)
Q Consensus 181 v~~~~~~~~~d~~~L~~~i~~~t~~v~~~~~~t 213 (498)
+.+ |.+.++++.+.|.+...++++....-
T Consensus 81 LTM----YG~~i~dvi~~Ir~~~~iLvVVGaeK 109 (178)
T 2o3a_A 81 LTM----YGIPLPQKLEEIKRADKVLVVVGAEK 109 (178)
T ss_dssp EEE----EEEEHHHHHHHHHTCSEEEEEEC---
T ss_pred Eec----CCCchHHHHHHhhcCCCEEEEECCCc
Confidence 765 55778888777763333333343333
No 251
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=20.93 E-value=4.7e+02 Score=23.72 Aligned_cols=83 Identities=18% Similarity=0.114 Sum_probs=51.2
Q ss_pred EEEEcCCchh-HHHHHHHHcCCe-eEEEEecCCcc------------ccCHHHHHHHhhh----CC--eEEEEeeccCCc
Q 010897 156 NIVTGANVQV-CWEKFARYFEVE-LKEVKLEEGYY------------VMNPVKAVELVDE----NT--ICVAAILGSTLT 215 (498)
Q Consensus 156 ~Iv~s~~~h~-~~~~~~~~~g~~-~~~v~~~~~~~------------~~d~~~L~~~i~~----~t--~~v~~~~~~t~t 215 (498)
-.|.|...|. .+.+.++..|-+ +..+|+.+.++ .++.+++++.+.. =| .+|.=-.|+-.|
T Consensus 59 ~Ai~P~~p~~~~~a~~A~~~G~EvllHlPMep~~~p~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnNHmGS~~T 138 (261)
T 2qv5_A 59 LGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNYTGVMNYLGGRFL 138 (261)
T ss_dssp EEEETTCSSHHHHHHHHHHHTCCEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCCCCSEEEEEECTTGG
T ss_pred EEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCcCcCcCCCCHHHHHHHHHHHHHHCCCcEEEecccccchh
Confidence 4456654444 677788888987 56678764323 2677877777763 23 333222344445
Q ss_pred ccccCHHHHHHHHHHhhcccCCCceEEEec
Q 010897 216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDA 245 (498)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~ 245 (498)
..-..++.+.+.++++ |++++ |.
T Consensus 139 ~~~~~M~~vm~~L~~~------gL~Fl-DS 161 (261)
T 2qv5_A 139 AEQSALEPVMRDIGKR------GLLFL-DD 161 (261)
T ss_dssp GCHHHHHHHHHHHHHT------TCEEE-EC
T ss_pred cCHHHHHHHHHHHHHC------CCEEE-cC
Confidence 5556778888888888 75554 54
No 252
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=20.50 E-value=4.9e+02 Score=23.75 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=40.7
Q ss_pred cEEEEcCCchhHHHHHHHHcCCeeEEEEecCCccccCHHHHH---HHhhhC-CeEEEEeeccCCcccccCHHHHHHHHHH
Q 010897 155 PNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAV---ELVDEN-TICVAAILGSTLTGEFEDVKLLHDLLTK 230 (498)
Q Consensus 155 ~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~L~---~~i~~~-t~~v~~~~~~t~tG~~~~l~~I~~la~~ 230 (498)
..+++ .|.++..+++.+|++...+.--...-...+.+|. +.+.++ .++| +..+..+. +.+..|+++
T Consensus 180 ~~~v~---~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~i-f~e~~~~~------~~~~~la~~ 249 (286)
T 3gi1_A 180 KTFVT---QHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTI-FAEDNVNP------KIAHAIAKS 249 (286)
T ss_dssp CEEEE---EESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEE-EECTTSCT------HHHHHHHHT
T ss_pred CEEEE---ECCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEE-EEeCCCCh------HHHHHHHHH
Confidence 35554 4777778889999998776532111335555554 455544 4444 44454442 333456778
Q ss_pred hhcccCCCceEE
Q 010897 231 KNEETGWDTPIH 242 (498)
Q Consensus 231 ~~~~~~~~~~l~ 242 (498)
. |+.+.
T Consensus 250 ~------g~~v~ 255 (286)
T 3gi1_A 250 T------GAKVK 255 (286)
T ss_dssp T------TCEEE
T ss_pred h------CCeEE
Confidence 7 77664
No 253
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=20.11 E-value=94 Score=29.34 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=35.1
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCchhHHHHHHHHcCCeeEEEEec
Q 010897 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE 184 (498)
Q Consensus 120 ~~~t~g~sea~~la~~a~~~~~~~~~~~~g~~~~~~~Iv~s~~~h~~~~~~~~~~g~~~~~v~~~ 184 (498)
++..++|..+.-+|..+.+. |. +..|++|...-..-...++.+|++++.++.+
T Consensus 76 vv~aSsGN~g~alA~aa~~~---------G~---~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 76 ILEPTSGNTGISLAMAARLK---------GY---RLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp EEEECSSHHHHHHHHHHHHH---------TC---EEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred EEEeCCcHHHHHHHHHHHHc---------CC---cEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 44445666666555555322 32 2478888876666677888999999988753
Done!