RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010897
(498 letters)
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 581 bits (1498), Expect = 0.0
Identities = 377/502 (75%), Positives = 434/502 (86%), Gaps = 4/502 (0%)
Query: 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
MV+S ++S + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61 ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
VKL EGYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360
+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC N LREGLEK
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK 360
Query: 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVV 420
T RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV
Sbjct: 361 TERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVV 420
Query: 421 VREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPL--KKSVRET 478
+REDFSR+L ERL+ IE+V++E++ LPSRV K + + + KKS +
Sbjct: 421 IREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDK 480
Query: 479 QEEVTRHWKRFV--KGRRAGAC 498
Q ++ WK+FV + + +G C
Sbjct: 481 QRDIITGWKKFVADRKKTSGIC 502
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 555 bits (1431), Expect = 0.0
Identities = 197/447 (44%), Positives = 278/447 (62%), Gaps = 6/447 (1%)
Query: 16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW + KL
Sbjct: 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61
Query: 76 VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA ML G+
Sbjct: 62 MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121
Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA 195
A K +W+++ + GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G M+P +
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180
Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
+E DENTI V G T TG +E + LHD L K +TG D +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240
Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++YLG TF
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300
Query: 316 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVG 372
+NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 360
Query: 373 VPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLV 430
+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F
Sbjct: 361 IPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFA 420
Query: 431 ERLISHIEEVLKEIESLPSRVSTKTAH 457
E L+ + LK + P +
Sbjct: 421 ELLLEDYKASLKYLSDHPKLQGIAQQN 447
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 477 bits (1231), Expect = e-167
Identities = 89/421 (21%), Positives = 168/421 (39%), Gaps = 37/421 (8%)
Query: 32 MPDNSMPKEAAYQVINDELMLDGNPR-LNLASFVTTWMEPECDKLVMASINKNYVDMDEY 90
M + + ++ + + LD N+ + + + P K+V + N D +
Sbjct: 5 MQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGLF 64
Query: 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
T L+ + V ++ L N A G G +EA ++A K W++KR++
Sbjct: 65 KGTKLLEEKAVALLGSLLNNK-----DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119
Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTI-CVAAI 209
+ P I+ +EK ++E ++E Y ++ + V++ + + I
Sbjct: 120 KNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-YTIDEKFVKDAVEDYDVDGIIGI 178
Query: 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-------DLEWD 262
G+T G ++++ L + + N IHVDAA GG + PFL + ++D
Sbjct: 179 AGTTELGTIDNIEELSKIAKENN------IYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD 232
Query: 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS 322
F L V SI + HK G G ++++ L YL + T+ ++
Sbjct: 233 FSLG-VDSITIDPHKMGHCPIPSGGILFKDI-GYKRYLDVDAPYLTETRQA-TILGTRVG 289
Query: 323 SQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD 382
Y LG EG + I+ CM N L + L++ F+ + + + + +VA +D
Sbjct: 290 FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPI-LNIVAIEDED 347
Query: 383 SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442
E+ + LR G V LR+VV R ++ I + + +
Sbjct: 348 -----YKEVCKKLRDRGIYVSVCNCV------KALRIVVMPHIKREHIDNFIEILNSIKR 396
Query: 443 E 443
+
Sbjct: 397 D 397
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 455 bits (1171), Expect = e-157
Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 35/457 (7%)
Query: 8 TDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTW 67
R + A +PR +P + E A + AS
Sbjct: 52 ASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG----YASGAVYH 107
Query: 68 MEPECDKLV----MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT 123
+ + N + D +P T + + V M AH+ A T G T
Sbjct: 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVT 166
Query: 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183
G +E+++LA ++ + K P V + ++K A+YF ++L L
Sbjct: 167 SGGTESLLLAMKTYRDWARAT-----KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL 221
Query: 184 EEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV 243
+ Y + E + NT+ VA G + + + L + HV
Sbjct: 222 DA-DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHV 274
Query: 244 DAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
DA GGFI P+ YP +DFRL V S++ HKYG G +++R D L +
Sbjct: 275 DACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334
Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359
++ G + T S+ + + + LG EGY + + A L+ G+
Sbjct: 335 YFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVR 394
Query: 360 KTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRV 419
+I +G PL ++ S ++++ E + GW + P
Sbjct: 395 AIPSLKI----LGDPLWVIAVA-SDELNIYQVMEEMAGRGWRLNGLHRPPAFH-----VA 444
Query: 420 VVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTA 456
+ +V+R ++ +++ + ++ + P + +
Sbjct: 445 LTLRHTEPGVVDRFLADLQDAVAQVRAHPEKATGMAP 481
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 434 bits (1118), Expect = e-149
Identities = 93/447 (20%), Positives = 190/447 (42%), Gaps = 35/447 (7%)
Query: 21 RYVRAAIPRFKMPDNSMPKEAAYQVIND--ELMLDGNPRLNLASFVTTWMEPECDKLVMA 78
R + ++P N +P++ + +N +L+ + S + L
Sbjct: 27 RSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTI 86
Query: 79 SINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134
+ K N + D +P ++++ V+M+ +FN P T G T G +E+++LA
Sbjct: 87 AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLAC 143
Query: 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVK 194
L+ K R +P I+ ++K A YF ++L+ V+L+ Y ++ K
Sbjct: 144 LSAKMYALHHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGK 198
Query: 195 AVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF 254
+ +++NT+ + + G +D++ L + K + P+HVD+ G FI F
Sbjct: 199 VKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSF 252
Query: 255 LYPDL-----EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS 309
+ DFR+P V SI+ HKYG G +++R D + + + G
Sbjct: 253 MEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG 312
Query: 310 DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK 369
+ TL S+ + ++ + + +G GY + +G A ++ +++ +
Sbjct: 313 LYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMG 372
Query: 370 DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSL 429
+ +++FS K + E+S+ L K GW A P A ++A R+ S +
Sbjct: 373 NPRYSVISFSSKT---LNIHELSDRLSKKGWHFNALQKPV-ALHMAFTRL------SAHV 422
Query: 430 VERLISHIEEVLKEIESLPSRVSTKTA 456
V+ + + ++E++S + +
Sbjct: 423 VDEICDILRTTVQELKSESNSKPSPDG 449
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 99.7 bits (248), Expect = 1e-22
Identities = 47/370 (12%), Positives = 106/370 (28%), Gaps = 59/370 (15%)
Query: 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
+ + ++ F + T S+ + L+ RK
Sbjct: 126 SGASIMYALTNKILESFFKQL---GLNVHAIATPISTGMSISLCLSAARKK--------- 173
Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEV--KLEEGYYVMNPVKAVELVDE-----NT 203
Y ++ K + + ++ V L+ + + + N
Sbjct: 174 -YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNR 232
Query: 204 ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWD 262
CV + L +D+ + + +D P ++ A +L +
Sbjct: 233 PCVLSTLTFFPPRNSDDIVEIAKICEN------YDIPHIINGAYAIQNNYYLEKLKKAFK 286
Query: 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS 322
+R+ ++ S K L G G V + + + P +
Sbjct: 287 YRVD---AVVSSSDKNLLTPIGGGLVYSTDAEFI--------KEISLSYPG-----RASA 330
Query: 323 SQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK-DVGVPLVAFSLK 381
+ ++ + +G + Y +++N + + L E L + DV P+ +
Sbjct: 331 TPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISV 390
Query: 382 DSSAHTVFEISEGLRKFGWIVPAYT----------MPANAENVAVLRVVVREDFSRSLVE 431
+S + LR G T + + V ED +
Sbjct: 391 NSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTED-----IV 445
Query: 432 RLISHIEEVL 441
+S +E++L
Sbjct: 446 NSVSKLEKIL 455
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 99.8 bits (249), Expect = 1e-22
Identities = 77/463 (16%), Positives = 156/463 (33%), Gaps = 64/463 (13%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD----GNPRLNLASFVTTWMEPE-CDKLV 76
Y+RA +P P++ ++ + I +M +P A + P ++
Sbjct: 42 YLRAQLPES-APEDPDSWDSIFGDIERIIMPGVVHWQSPH-MHAYYPALTSWPSLLGDML 99
Query: 77 MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-----VADDKTAVGVGTVGSSEAIM 131
+IN P TEL+ ++ +A + P GV SE+ +
Sbjct: 100 ADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTL 159
Query: 132 LAGLAFKRKWQQKRKEQGKPYDKPN------IVTGANVQVCWEKFARYFEVELKEVKLEE 185
+A LA ++ + K D+ + EK V++K + +++
Sbjct: 160 IALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDD 219
Query: 186 GYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
+ + + ++E+ + V A LG+T F+ + L + E W
Sbjct: 220 NF-SLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPIC---AREGLW-- 273
Query: 240 PIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD 298
+H+DAA G FL P+ + + S + K+ +V+ + K L
Sbjct: 274 -LHIDAAYAG--TAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQ 330
Query: 299 ELVFHINYLGSDQPTFTLNFSKGSSQ------------IIAQYYQFIRLGFEGYKNIMEN 346
+ YL +F +I + G + + + +
Sbjct: 331 TFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF------GVKNLQAHVRH 384
Query: 347 CMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYT 406
A+ + FEI +K + LV F LK ++ T + + + K G +
Sbjct: 385 GTEMAKYFESLVRNDPSFEIPAK-RHLGLVVFRLKGPNSLTE-NVLKEIAKAGRLFLIPA 442
Query: 407 MPANAENVAVLRVVV------REDFSRSLVERLISHIEEVLKE 443
++ ++R V R+D + +L +
Sbjct: 443 T---IQDKLIIRFTVTSQFTTRDDI-LRDWNLIRDAATLILSQ 481
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 96.7 bits (241), Expect = 1e-21
Identities = 80/456 (17%), Positives = 158/456 (34%), Gaps = 52/456 (11%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD----GNPRLNLASFVTTWMEPE-CDKLV 76
Y++ IP P+ + Q I +M +P+ A F T P ++
Sbjct: 37 YLKPLIPDA-APEKPEKWQDVMQDIERVIMPGVTHWHSPK-FHAYFPTANSYPAIVADML 94
Query: 77 MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP----VADDKTAVGVGTVGSSEAIML 132
+I P TEL+ ++ + + P GV +SE+ ++
Sbjct: 95 SGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLV 154
Query: 133 AGLAFKRKWQQKRKEQGKPYDKPN------IVTGANVQVCWEKFARYFEVELKEVKLEEG 186
A L K K ++ KE +D+ E+ V+L+ V+ E
Sbjct: 155 ALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN- 213
Query: 187 YYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
+ M + ++++ LG+T + F+ + + N+ W
Sbjct: 214 -HRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG---NKHNLW--- 266
Query: 241 IHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
IHVDAA G + F+ P+ + + S N + HK+ LV + + + +
Sbjct: 267 IHVDAAYAG--SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNA 324
Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQ------IIAQYYQFIRLGFEGYKNIMENCMGNARA 353
YL D ++ + ++ G E + + A+
Sbjct: 325 FNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQ 384
Query: 354 LREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAEN 413
+ RFE+ ++ + + LV F LK S+ + + + G I ++
Sbjct: 385 FGDLCVADSRFELAAE-INMGLVCFRLKGSNERNE-ALLKRINGRGHIHLVPAK---IKD 439
Query: 414 VAVLRVVV------REDFSRSLVERLISHIEEVLKE 443
V LR+ + ED + + + +E+ +E
Sbjct: 440 VYFLRMAICSRFTQSEDM-EYSWKEVSAAADEMEQE 474
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 93.3 bits (232), Expect = 1e-20
Identities = 86/473 (18%), Positives = 146/473 (30%), Gaps = 85/473 (17%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
Y+R IP P E Q + +M VT W P
Sbjct: 37 YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85
Query: 73 -----DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP----VADDKTAVGVGT 123
++ +I P TEL+ ++ + + P + GV
Sbjct: 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145
Query: 124 VGSSEAIMLAGLA----FKRKWQQKRKEQGKPYDKPNIV--TGANVQVCWEKFARYFEVE 177
+SEA ++A LA R+ Q + +V E+ V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205
Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
LK + + + M E ++ + V A LG+T F+++ + +
Sbjct: 206 LKAIPSDGKF-AMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC--- 261
Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW 290
+EE W +HVDAA G + F+ P+ + S N + HK+ LV +
Sbjct: 262 HEEDIW---LHVDAAYAG--SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV 316
Query: 291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR-------------LGF 337
+ + DL YL L Q+ R G
Sbjct: 317 KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL-----PLGRRFRSLKMWFVFRMYGV 371
Query: 338 EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK 397
+G + + + + + + RFE+ ++ V + LV F LK S + E +
Sbjct: 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE-VTLGLVCFRLKGSDGLNE-ALLERINS 429
Query: 398 FGWIVPAYTMPANAENVAVLRVVV------REDFSRSLVERLISHIEEVLKEI 444
I VLR + V HI + E+
Sbjct: 430 ARKIHLVPCR---LRGQFVLRFAICSRKVESGH-----VRLAWEHIRGLAAEL 474
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 84.7 bits (210), Expect = 1e-17
Identities = 68/470 (14%), Positives = 154/470 (32%), Gaps = 83/470 (17%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
+ AI + + + P ++ + + + P+C
Sbjct: 63 ALEDAINAVDLDNKNAPLKSVIDDVAELVA----------KNAIFTQHPDCIAHLHTPPL 112
Query: 73 ------DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
+ ++A++N++ D+ T ++ + VN + ++ + A G+ T G
Sbjct: 113 MPAVAAE-AMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS----EKADGIFTSGG 167
Query: 127 SEAIMLAGLA-----FKRKWQQKRKEQGKPYDKPN--IVTGANVQVCWEKFARYF---EV 176
+++ + + + ++ G P IV +K A + E
Sbjct: 168 TQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEK 227
Query: 177 ELKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTK 230
+ V M+ K E++ + + G+T G +D+ + D+
Sbjct: 228 AVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA-- 284
Query: 231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVV 289
+ W +HVD A GG + + + + SI+V HK G ++
Sbjct: 285 -VKHDMW---MHVDGAYGG---ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALL 337
Query: 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ------IIAQYYQFIRLGFEGYKNI 343
K + L+ H +YL + N S + + +G + ++
Sbjct: 338 VNDKSNF-KFLLHHADYLNREHDELP-NLVDKSIATTKRFDALKVFMTMQNVGPKALGDM 395
Query: 344 MENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHT---VFEISEGLRKFGW 400
++ + + + + +FE+L+ + + V F +A + G
Sbjct: 396 YDHLLAQTLEVADMIRTNDQFELLA-EPSLSTVLFRATHETADLDELNKALRLEALTRGI 454
Query: 401 IVPAYTMPANAENVAVLRVVV------REDFSRSLVERLISHIEEVLKEI 444
V T+ + L+ + D E L+S I + E+
Sbjct: 455 AVLGETI---VDGKTALKFTILNPCLTTSD-----FESLLSKINMLAVEL 496
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 82.0 bits (203), Expect = 8e-17
Identities = 77/479 (16%), Positives = 155/479 (32%), Gaps = 84/479 (17%)
Query: 22 YVRAAIPRF--KMPDNSMPKEAAYQVINDELMLD---GNPR--------LNLASFVTTWM 68
+ + F ++ D+ E D L G+PR L++ W+
Sbjct: 54 QLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWL 113
Query: 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128
++ N N + PV ++ + + + K G+ + G +
Sbjct: 114 --------TSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS---SKDGDGIFSPGGAI 162
Query: 129 AIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFARYF---EVELKEVKLE 184
+ M + +A + K+ + K +G K + T +K + +K
Sbjct: 163 SNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN 222
Query: 185 EGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238
E + P + E V A G+T+ G F+ ++ + D+ + W
Sbjct: 223 E-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC---EKYNLW- 277
Query: 239 TPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP 297
+HVDAA GG + + S+ + HK V ++ + K L
Sbjct: 278 --LHVDAAWGG--GLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQ 333
Query: 298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQ----------YYQFIRLGFEGYKNIMENC 347
YL + +++ G I Q + + G G++N + C
Sbjct: 334 GCNQMCAGYLFQPDKQYDVSYDTGDKAI--QCGRHVDIFKFWLMWKAKGTVGFENQINKC 391
Query: 348 MGNARALREGLEKTGRFEILSK-DVGVPLVAF-----SLKDSSAHTVFE---------IS 392
+ A L ++ FE++ + V F SL+ I
Sbjct: 392 LELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIK 451
Query: 393 EGLRKFGWIVPAYTMPANAENVAVLRVVV------REDFSRSLVERLISHIEEVLKEIE 445
+ + G + Y + R+V+ + D ++ LI IE + +++
Sbjct: 452 ALMMESGTTMVGYQ--PQGDKANFFRMVISNPAATQSD-----IDFLIEEIERLGQDLH 503
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 79.4 bits (196), Expect = 5e-16
Identities = 75/473 (15%), Positives = 153/473 (32%), Gaps = 81/473 (17%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD---GNPR--------LNLASFVTTWMEP 70
++ + ++ ++ + + G+PR L+ + +
Sbjct: 73 ELKQLLD-LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRII-- 129
Query: 71 ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130
S+N + + PV ++ + + L D G+ G S +
Sbjct: 130 ------TESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGD-----GIFCPGGSISN 178
Query: 131 MLAGLAFKRKWQQKRKEQG-KPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEG 186
M A + + K++G + + T +K A + ++ VK +E
Sbjct: 179 MYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADER 238
Query: 187 YYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
M P + V+A G+T+ G F+ ++ + D+ W
Sbjct: 239 G-KMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVC---QRHGLW--- 291
Query: 241 IHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDD-LPD 298
+HVDAA GG + L + S+ + HK ++ + + L
Sbjct: 292 LHVDAAWGG--SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKR 349
Query: 299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQ----------YYQFIRLGFEGYKNIMENCM 348
+YL + + G + Q + + G +G + ++
Sbjct: 350 CHGSQASYLFQQDKFYDVALDTGDKVV--QCGRRVDCLKLWLMWKAQGDQGLERRIDQAF 407
Query: 349 GNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFE--------------ISEG 394
AR L E ++K FE++ + V F S E + E
Sbjct: 408 VLARYLVEEMKKREGFELVM-EPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKER 466
Query: 395 LRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESL 447
+ K G ++ Y + RVVV + S + + ++ +L E+E L
Sbjct: 467 MVKEGSMMIGYQP--HGTRGNFFRVVV----ANSALTC--ADMDFLLNELERL 511
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 1e-08
Identities = 61/492 (12%), Positives = 123/492 (25%), Gaps = 145/492 (29%)
Query: 2 VISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLA 61
++S E D I+ D ++ +L + +
Sbjct: 45 ILSKEEID--HII----------------MSKD---AVSGTLRLF--WTLLSKQEEM-VQ 80
Query: 62 SFVTTWMEPECDKLVMASINKNYVDMDEYP-VTTELQNRCVNMIAHLFNTPVADDKTAVG 120
FV + L M+ I P + T + + L+N K
Sbjct: 81 KFVEEVLRINYKFL-MSPIKTEQRQ----PSMMTRMYIEQRD---RLYNDNQVFAK---- 128
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQ----------GKP------YDKPNIVTGANVQ 164
V + L ++ + R + GK + + +
Sbjct: 129 -YNVSRLQPY----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 165 VCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKL- 223
+ W E L++ Y ++P D S + ++
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDH---------SSNIKLRIHSIQAE 233
Query: 224 LHDLLTKKNEETG-------WDTPIHVDAASGGF--------------IAPFLYPDLEWD 262
L LL K E + +A F + FL
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQN-AKAWNA----FNLSCKILLTTRFKQVTDFLSAATT-- 286
Query: 263 FRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELV----FHINYLGSDQPTFTLN 317
+ L + + DLP E++ ++ + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIAE-------S 336
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE---ILSKDVGVP 374
G + ++ + + I+E+ + L + F+ + +P
Sbjct: 337 IRDGLATW--DNWK--HVNCDKLTTIIESSL---NVLEPAEYRK-MFDRLSVFPPSAHIP 388
Query: 375 LVAFSL--KDSSAHTVFEISEGLRKFGWIV-----PAYTMP-------ANAENVAVLRVV 420
+ SL D V + L K+ + ++P EN L
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-- 446
Query: 421 VREDFSRSLVER 432
RS+V+
Sbjct: 447 ------RSIVDH 452
Score = 47.5 bits (112), Expect = 8e-06
Identities = 52/371 (14%), Positives = 112/371 (30%), Gaps = 136/371 (36%)
Query: 6 TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL------N 59
T + + +L +Y+ +P+E L NPR +
Sbjct: 299 TPDEVKSLLL-----KYL-------DCRPQDLPREV----------LTTNPRRLSIIAES 336
Query: 60 LASFVTTW---MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF--NTPVAD 114
+ + TW CDKL +I ++ +++ E E + + + ++ +F + +
Sbjct: 337 IRDGLATWDNWKHVNCDKL--TTIIESSLNVLE---PAEYR-KMFDRLS-VFPPSAHI-- 387
Query: 115 DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF 174
I+L+ + W D +V K +Y
Sbjct: 388 -------------PTILLSLI-----WFDV-----IKSDVMVVV---------NKLHKYS 415
Query: 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD-LLTKKNE 233
VE K+ K E + + + L + E+ LH ++ N
Sbjct: 416 LVE-KQPK-ESTISIPS------------------IYLELKVKLENEYALHRSIVDHYNI 455
Query: 234 ETGWD----TPIHVDAASGGFIA---------------PFLYPDLEWDFRLPLVKSINVS 274
+D P ++D I ++ D + ++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF------LEQ---- 505
Query: 275 GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT------LNFSKGSSQ--II 326
K + + W + + +L F+ Y+ + P + L+F + I
Sbjct: 506 --K--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 327 AQYYQFIRLGF 337
++Y +R+
Sbjct: 562 SKYTDLLRIAL 572
Score = 40.6 bits (94), Expect = 0.001
Identities = 43/346 (12%), Positives = 89/346 (25%), Gaps = 124/346 (35%)
Query: 163 VQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVK 222
+ V + F F+ K+V ++ + + + E +D I+ S
Sbjct: 22 LSVFEDAFVDNFDC--KDV--QD---MPKSILSKEEIDH-------IIMSK--DAVSGTL 65
Query: 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY 282
L L K EE V F+ L + ++ L+ I
Sbjct: 66 RLFWTLLSKQEEM-------VQK----FVEEVLRINYKF-----LMSPIKT--------- 100
Query: 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKN 342
R + + + L +D F +K Y RL +
Sbjct: 101 ------EQRQPSMMTRMYIEQRDRLYNDNQVF----AK---------YNVSRL-----QP 136
Query: 343 IMENCMGNARALREGLEKTGRFEILS--------KDVGVPLVAFSLKDSSAHTVFEISEG 394
++ LR+ L + + + K + +
Sbjct: 137 YLK--------LRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMD---- 181
Query: 395 LRKFG--WIVPAYTMPANAENVAVLRVVVREDFSRSLVE---RLISHIEEVLKEIESLPS 449
F W+ N+ + +++E +L+ I+ S
Sbjct: 182 ---FKIFWL-----------NLK------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 450 RVSTKTAHVIPMVNETQGDKPLKKS------VRETQEEVTRHWKRF 489
+ + + + KP + V+ + W F
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-----AKAWNAF 262
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 47.7 bits (113), Expect = 5e-06
Identities = 36/267 (13%), Positives = 85/267 (31%), Gaps = 36/267 (13%)
Query: 100 CVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVT 159
+++ ++ + V + + ++ L L + K + + I+
Sbjct: 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKY----------IIW 149
Query: 160 GANVQVCWEKFARY--FEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGST 213
Q K FE + E LE + + E + +C+ +
Sbjct: 150 PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACF 209
Query: 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV 273
+ ++ L + +D P V+ A G + ++ ++ R+ + +
Sbjct: 210 APRVPDRLEELAVICAN------YDIPHVVNNAYGLQSSKCMH-LIQQGARVGRIDAFVQ 262
Query: 274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333
S K +V G G ++ + ++ S P+ + + S
Sbjct: 263 SLDKNFMVPVG-GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLS----------- 310
Query: 334 RLGFEGYKNIMENCMGNARALREGLEK 360
LG GY+ +++ L L+K
Sbjct: 311 -LGCSGYRKLLKERKEMFVYLSTQLKK 336
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 46.2 bits (109), Expect = 1e-05
Identities = 39/267 (14%), Positives = 82/267 (30%), Gaps = 36/267 (13%)
Query: 100 CVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVT 159
+++ + V + + ++ L L + K + + I+
Sbjct: 118 TNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKY----------IIW 167
Query: 160 GANVQVCWEKFARY--FEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGST 213
Q K FE + E LE + V E +C+ +
Sbjct: 168 PRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCF 227
Query: 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV 273
+ ++ L + +D P V+ A G + ++ ++ R+ + +
Sbjct: 228 APRVPDRLEELAVICAN------YDIPHIVNNAYGVQSSKCMH-LIQQGARVGRIDAFVQ 280
Query: 274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333
S K +V G G ++ D E+ S P+ + + S
Sbjct: 281 SLDKNFMVPVG-GAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLS----------- 328
Query: 334 RLGFEGYKNIMENCMGNARALREGLEK 360
LG GYK +++ L ++K
Sbjct: 329 -LGSNGYKKLLKERKEMFSYLSNQIKK 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 5e-05
Identities = 51/269 (18%), Positives = 88/269 (32%), Gaps = 91/269 (33%)
Query: 289 VWRTKDD-LPDELVFHINYLGSDQPT-FTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMEN 346
VW D+ D F I + + P T++F + I + Y + ++ I++
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-----FETIVDG 1699
Query: 347 CMGNARALREGLEKTGRFEILSKDVGV--------P-LVAFSLKDSSAHTVFEI--SEGL 395
+ + +E E + + + G+ P L A FE S+GL
Sbjct: 1700 KLKTEKIFKEINEHSTSY-TFRSEKGLLSATQFTQPALTLMEK----A--AFEDLKSKGL 1752
Query: 396 RKFGWIVPA------YT-MPANAENV----AVLRVV-VREDFSRSLVER----------- 432
A Y + + A+ V +++ VV R + V R
Sbjct: 1753 IPADATF-AGHSLGEYAALASLAD-VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 433 -------LISHIEEVLKEIESLPSRVSTKTAHVIPMVN---ETQ-----GDK-------- 469
S +E L+ + RV +T ++ +VN E Q GD
Sbjct: 1811 AINPGRVAASFSQEALQYVV---ERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 470 -------------PLKKSVRETQEEVTRH 485
L+KS+ + EEV H
Sbjct: 1868 VLNFIKLQKIDIIELQKSL--SLEEVEGH 1894
Score = 39.3 bits (91), Expect = 0.003
Identities = 31/228 (13%), Positives = 58/228 (25%), Gaps = 74/228 (32%)
Query: 295 DLPDELVFHINYL----GSDQPTFTLNFSKG---SSQI--IAQYYQFIRLGFEGYKNIME 345
+P F + L P T F+ ++ + ++ ++
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV------------ 68
Query: 346 NCMGNARALREGLEKTGRFEILSKDVGVPLVAFS---LKDSSAHTV-----FEISEGLRK 397
+ + K G+F+ + L F L+ + H + E L K
Sbjct: 69 -----SSLVEPS--KVGQFDQVLNLC---LTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 398 FGWIVPAYTM--------PANAENVAVLRVVVRED------F------------------ 425
++ Y N A+ R V + F
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 426 -SRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVN--ETQGDKP 470
LV LI E L E+ + ++ E + P
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 40.7 bits (96), Expect = 8e-04
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA 409
NARAL GL+ G F + ++ +VA L+D + + L G V PA
Sbjct: 324 NARALHGGLKAMG-FRLGTETCDSAIVAVMLED--QEQAAMMWQALLDGGLYVNMARPPA 380
Query: 410 NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444
+LR + + + + ++ ++ + + +
Sbjct: 381 TPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 40.2 bits (95), Expect = 0.001
Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA 409
N + L G F++ + + P++ ++ F +++ L+ G V PA
Sbjct: 303 NTDYAKAQLLDHG-FDLGATES--PILPIFIRS--NEKTFWVTKMLQDDGVFVNPVVSPA 357
Query: 410 NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445
+++R + + ++ I + +V K+ E
Sbjct: 358 VPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 38.4 bits (90), Expect = 0.005
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA 409
AR LR GL + G I S+ + L D ++ + L G + PA
Sbjct: 316 MARKLRIGLSQLG-LTIRSESQIIGLE---TGD--ERNTEKVRDYLESNGVFGSVFCRPA 369
Query: 410 NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSR 450
++N ++R+ + D + + ++I + + + R
Sbjct: 370 TSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGD-FYFR 409
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 37.5 bits (88), Expect = 0.008
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA 409
NAR RE + G F + D ++ L D A + + L+K G V + P
Sbjct: 308 NARQFREQMSAAG-FTLAGADH--AIIPVMLGD--AVVAQKFARELQKEGIYVTGFFYPV 362
Query: 410 NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444
+ A +R + + + R + + K++
Sbjct: 363 VPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 36.8 bits (86), Expect = 0.014
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA 409
N+R R G+EK G F+++ + P++ L D A +++ L + G V ++ P
Sbjct: 307 NSRYFRAGMEKLG-FQLVPGNH--PIIPVMLGD--AQLATNMADHLLQEGIYVVGFSYPV 361
Query: 410 NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444
A +RV + ++ ++R I +V K++
Sbjct: 362 VPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 35.0 bits (81), Expect = 0.053
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA 409
NAR L L++ G + + +DV +V + E LR G +
Sbjct: 261 NARFLALKLKEIG-YSVNPEDVKTNMVILRTDNLKV-NAHGFIEALRNSGVLA------- 311
Query: 410 NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 444
NA + +R+V +D SR+ +E ++ E++ ++
Sbjct: 312 NAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 33.1 bits (76), Expect = 0.19
Identities = 7/96 (7%), Positives = 20/96 (20%), Gaps = 6/96 (6%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA 409
A+ L E + + +A ++ + + G Y +
Sbjct: 264 QAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDK 323
Query: 410 NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445
+ + E + +
Sbjct: 324 D------GYCSTEISVGDAYGELDQQTRDAGFARLR 353
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 30.5 bits (69), Expect = 0.92
Identities = 8/80 (10%), Positives = 20/80 (25%)
Query: 220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG 279
+ ++ L + N LPL+ + KY
Sbjct: 77 EQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYV 136
Query: 280 LVYAGVGWVVWRTKDDLPDE 299
+ +A + + + +
Sbjct: 137 ICHADYPFDEYEFGKPVDHQ 156
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 31.0 bits (71), Expect = 1.0
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 350 NARALREGLEKTGRFEILSKDVG-VPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMP 408
R G++ F + PL+ +++E LR+ G V A P
Sbjct: 298 LITRFRAGVQDLP-FTLADSCSAIQPLIV-----GDNSRALQLAEKLRQQGCWVTAIRPP 351
Query: 409 ANAENVAVLRVVVREDFSRSLVERLISHIEEV 440
A LR+ + ++RL+ +
Sbjct: 352 TVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 29.7 bits (67), Expect = 2.6
Identities = 46/350 (13%), Positives = 100/350 (28%), Gaps = 84/350 (24%)
Query: 123 TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN----VQVCWEKFARYFEVEL 178
T G+ EA + K +V N V E+ + +
Sbjct: 75 TNGAREAKFAVMHSL-----------AKKDAW--VVMDENCHYSSYVAAER----AGLNI 117
Query: 179 KEVKL-EEGYYVMNPVKAVELVDENTICVAAIL-----GSTLTGEFEDVKLLHDLLTKKN 232
V + Y + P + ++E +L G DVK + + ++ +
Sbjct: 118 ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYD 177
Query: 233 EETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV-----SGHKYGLVYAGVGW 287
P+ V+ A + +K I SGHK A G
Sbjct: 178 ------VPLLVNGAYA---IGRMPVS---------LKEIGADFIVGSGHK---SMAASGP 216
Query: 288 V-VWRTKDDLPDELVFHINYLGSDQPTFTLNFSK--GSSQIIAQYYQF-IRLGF-EGYKN 342
+ V K++ + ++ + + G + A
Sbjct: 217 IGVMGMKEEWAEIVLR-------RSEKYKNKEVELLGCTARGATIITLMASFPHVRERIK 269
Query: 343 IMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIV 402
+ + AR +EK G ++ L+ F + ++EIS+ + + +
Sbjct: 270 RWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE-----VLYEISKKAKGGRFFL 324
Query: 403 PAYTMPANAENVAVLRVVV---------REDFSRSLVERLISHIEEVLKE 443
+ E+ V+ +++ +E++++
Sbjct: 325 YRELKSRKIHGIKPGLTRYFKLSTYGLSDEE-----VDYVLNAFKEIIEK 369
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166,
structural genomics, JC protein structure initiative;
2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Length = 442
Score = 29.1 bits (66), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 350 NARALREGLEKT---GRFEILSKDVGVPLV 376
+ +A+REGL+ GRFEIL K+ +
Sbjct: 291 SEKAIREGLKNAKNLGRFEILEKN--GKMY 318
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 28.7 bits (65), Expect = 4.1
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 23/101 (22%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVF-----EISEGLRKFGWIVPA 404
A+ L +GLE G E+L + A+ +F + + L K G+
Sbjct: 272 AAQRLAQGLEGLGGVEVLG-------------GTEANILFCRLDSAMIDALLKAGFGF-- 316
Query: 405 YTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 445
Y + V+R V + V+ L++ + +
Sbjct: 317 Y---HDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRTQ 354
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 28.9 bits (64), Expect = 4.2
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 420 VVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVI 459
+ ++ E L + +I + R + T +
Sbjct: 379 IGTKEEVLKCAEELHDRYMHIFNDILDIEWRKARVTPWFM 418
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 28.7 bits (65), Expect = 4.6
Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 10/108 (9%)
Query: 338 EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK 397
G + A R ++ FE++S+ + + ++A+ +F + +
Sbjct: 274 GGADAEVARIASQAADFRAKIKDLP-FELVSESPANGVTSVHPTTANAYDIF--LKLKDE 330
Query: 398 FGWIVPAYTMPANAENVA--VLRVVVREDFSRSLVERLISHIEEVLKE 443
+G + N + + RV + L++ +++ K
Sbjct: 331 YG-----IWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 28.4 bits (63), Expect = 5.0
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 421 VREDFSRSL--VERLISHIEEVLKEIESLPSRVST--KTAHVIPMVNETQGDKPLKKSVR 476
+ ED E +++ L +V A + +T ++++
Sbjct: 240 LPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRL----QTAYAGEKAEAIQ 295
Query: 477 ETQEEVTRHWKRF---VKGRRA 495
++EV+ W+ GRR
Sbjct: 296 NKEQEVSAAWQALLDACAGRRT 317
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan
synthesis, cell division; HET: ADP; 2.0A {Mycobacterium
tuberculosis} PDB: 2vor_A*
Length = 487
Score = 28.8 bits (65), Expect = 5.2
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 350 NARALREGLEKT---GRFEILSKDVGVPLV 376
+ A+R G GR E + P V
Sbjct: 322 DGDAVRAGFAAVTSPGRLERMRSA---PTV 348
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 7.3
Identities = 5/22 (22%), Positives = 13/22 (59%), Gaps = 8/22 (36%)
Query: 127 SEAIMLAGLAFKRKWQQKRKEQ 148
E+I RKW+++++++
Sbjct: 84 PESI--------RKWREEQRKR 97
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 27.9 bits (63), Expect = 8.1
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 19/116 (16%)
Query: 338 EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP---LVAFSLKDSSAHTVFEISEG 394
G + N R+L G+ G F L D + + AF + + E
Sbjct: 262 GGVAARHQRYQQNQRSLVAGMRALG-FNTLLDD-ELHSPIITAFYSPEDPQYRFSEFYRR 319
Query: 395 LRKFGWIVPAYTMPANAENVAVLRV-----VVREDFSRSLVERLISHIEEVLKEIE 445
L++ G+++ P R+ V D + L++ I + +
Sbjct: 320 LKEQGFVI----YPGKVSQSDCFRIGNIGEVYAAD-----ITALLTAIRTAMYWTK 366
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 27.6 bits (62), Expect = 8.9
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 12/93 (12%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPA 409
A L+ GLE G + + L+++ E++ +
Sbjct: 276 MAAILKAGLEACG-IRLAW-PSASNQLFPILENTMIA---ELNNDFDMYTV-------EP 323
Query: 410 NAENVAVLRVVVREDFSRSLVERLISHIEEVLK 442
+ ++R+ R + ++ ++
Sbjct: 324 LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,763,540
Number of extensions: 480841
Number of successful extensions: 1301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 50
Length of query: 498
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 400
Effective length of database: 3,965,535
Effective search space: 1586214000
Effective search space used: 1586214000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)