RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010897
(498 letters)
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 414 bits (1065), Expect = e-142
Identities = 199/443 (44%), Positives = 280/443 (63%), Gaps = 6/443 (1%)
Query: 11 REILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEP 70
E+L S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW +
Sbjct: 9 SELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDE 68
Query: 71 ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130
KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA
Sbjct: 69 NVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEAC 128
Query: 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVM 190
ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G M
Sbjct: 129 MLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFM 187
Query: 191 NPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF 250
+P + +E DENTI V G T TG +E + LHD L K +TG D +H+DAASGGF
Sbjct: 188 DPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 247
Query: 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310
+APF+ PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++YLG
Sbjct: 248 LAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ 307
Query: 311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK- 369
TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E +
Sbjct: 308 IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG 367
Query: 370 --DVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDF 425
D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F
Sbjct: 368 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGF 427
Query: 426 SRSLVERLISHIEEVLKEIESLP 448
E L+ + LK + P
Sbjct: 428 EMDFAELLLEDYKASLKYLSDHP 450
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 151 bits (382), Expect = 4e-41
Identities = 86/462 (18%), Positives = 155/462 (33%), Gaps = 63/462 (13%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECD-------- 73
Y+R IP P E Q + +M VT W P
Sbjct: 37 YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85
Query: 74 ------KLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV----GVGT 123
++ +I P TEL+ ++ + + P A GV
Sbjct: 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145
Query: 124 VGSSEAIMLAGLAFKRKWQQKRKE------QGKPYDKPNIVTGANVQVCWEKFARYFEVE 177
+SEA ++A LA + K ++ + QG +K E+ V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205
Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
LK + +G + M E ++ + V A LG+T F+++ + + +
Sbjct: 206 LKAIP-SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE- 263
Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291
D +HVDAA G + + S N + HK+ LV + +
Sbjct: 264 -----EDIWLHVDAAYAGSAFICPEFRHLLNG-VEFADSFNFNPHKWLLVNFDCSAMWVK 317
Query: 292 TKDDLP-----DELVFHINYLGSDQPTFTLNFSKGSSQ---IIAQYYQFIRLGFEGYKNI 343
+ DL D + ++ GS T ++ + + ++ F G +G +
Sbjct: 318 RRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAY 377
Query: 344 MENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVP 403
+ + + + + RFE+ + +V + LV F LK S + E + I
Sbjct: 378 IRKHVQLSHEFEAFVLQDPRFEVCA-EVTLGLVCFRLKGSDGLNE-ALLERINSARKI-- 433
Query: 404 AYTMPANAENVAVLRVVV-REDFSRSLVERLISHIEEVLKEI 444
+ +P VLR + V HI + E+
Sbjct: 434 -HLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 112 bits (280), Expect = 2e-27
Identities = 56/471 (11%), Positives = 125/471 (26%), Gaps = 74/471 (15%)
Query: 21 RYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASF------VTTWMEPECDK 74
+R + + K P++ + +++ ++D N L V + +
Sbjct: 8 HLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHY 67
Query: 75 LVMASINKNYVDMDEYP------VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128
+ I ++ P + ++ N V + L A ++
Sbjct: 68 RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH----SVASCFVVPMATG 123
Query: 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK--LEEG 186
+ R + K K I+ Q K E ++ LE
Sbjct: 124 MSLTLCFLTLRHKRPKAKY---------IIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 174
Query: 187 YYVMNPVKAVE----LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242
+ L E+ +C+ + + ++ L + +D P
Sbjct: 175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICAN------YDIPHV 228
Query: 243 VDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302
V+ A G + ++ ++ R+ + + S K +V G + + +
Sbjct: 229 VNNAYGLQSSKCMHL-IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFI------ 281
Query: 303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG 362
+ +S + + LG GY+ +++ L L+K
Sbjct: 282 -------QDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA 334
Query: 363 RFEIL---------------------SKDVGVPLVAFSLKDS--SAHTVFEISEGLRKFG 399
D V + L S + G
Sbjct: 335 EAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSG 394
Query: 400 WIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSR 450
+ A+ A L V+ I +++ L + +R
Sbjct: 395 HTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTR 445
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 74.6 bits (182), Expect = 5e-15
Identities = 52/470 (11%), Positives = 123/470 (26%), Gaps = 74/470 (15%)
Query: 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
++ E +L+ + + K+P+N + E + M+D +
Sbjct: 9 LIPKNMEKRGELVLNEYL--KEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKS 66
Query: 61 AS--------FVTTWMEPECDKLVMASINKNYVDMDEY----PVTTELQNRCVNMIAHLF 108
+ E + N VD + L N+ +
Sbjct: 67 VRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQL 126
Query: 109 NTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE 168
V + T S+ + L+ RK ++
Sbjct: 127 GLNVH------AIATPISTGMSISLCLSAARKKYGSNV----------VIYPYASHKSPI 170
Query: 169 KFARYFEVELKEVK--LEEGYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFEDV 221
K + + ++ V+ L+ + + + N CV + L +D+
Sbjct: 171 KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDI 230
Query: 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV 281
+ + + P ++ A Y + V ++ S K L
Sbjct: 231 VEIAKICENYD------IPHIINGAYAIQNN--YYLEKLKKAFKYRVDAVVSSSDKNLLT 282
Query: 282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYK 341
G G V + + I+ + ++ ++ + +G + Y
Sbjct: 283 PIGGGLVYSTDAEFI-----KEISL--------SYPGRASATPVVNTLVSLLSMGSKNYL 329
Query: 342 NIMENCMGNARALREGLEKTGR---FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKF 398
+++N + + L E L + + L + + D EI+ L
Sbjct: 330 ELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPV-----EIAAKLYNL 384
Query: 399 G--------WIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440
+ + + +S +E++
Sbjct: 385 RVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 42.1 bits (98), Expect = 1e-04
Identities = 27/208 (12%), Positives = 62/208 (29%), Gaps = 16/208 (7%)
Query: 237 WDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296
+D + VD + + +++ G G + ++
Sbjct: 206 YDALVMVDDSHAVGFVGENGRGSHEYCDVM--GRVDIITGTLGKALGGASGGYTAARKEV 263
Query: 297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALRE 356
+ +L + FS + I + E + + NAR RE
Sbjct: 264 VE-------WLRQRSRPYL--FSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFRE 314
Query: 357 GLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAV 416
+ G + +P++ A + + L+K G V + P + A
Sbjct: 315 QMSAAGFTLAGADHAIIPVMLGD-----AVVAQKFARELQKEGIYVTGFFYPVVPKGQAR 369
Query: 417 LRVVVREDFSRSLVERLISHIEEVLKEI 444
+R + + + R + + K++
Sbjct: 370 IRTQMSAAHTPEQITRAVEAFTRIGKQL 397
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 41.0 bits (94), Expect = 2e-04
Identities = 49/392 (12%), Positives = 99/392 (25%), Gaps = 59/392 (15%)
Query: 56 PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEY---PVTTELQNRCVNMIAHLFNTPV 112
P L +S PE + A + + Y +T +++ + +F V
Sbjct: 3 PALGFSSDNIAGASPE---VAQALVKHSSGQAGPYGTDELTAQVKRK----FCEIFERDV 55
Query: 113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY-----DKPNIVTGANVQVCW 167
+ A L A W P + +
Sbjct: 56 E------VFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTV 109
Query: 168 EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL 227
+ A ++ + E ++ + + V +I DV L
Sbjct: 110 DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSL 169
Query: 228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW 287
+H+D + L V +++ K G++ A
Sbjct: 170 G------------LHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIV 217
Query: 288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENC 347
+ + +L S L + +
Sbjct: 218 LFNTSLATEMSYRRKRAGHLSSKMR-------------FLSAQIDAYLTDDLWLRNARKA 264
Query: 348 MGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTM 407
A+ L +GLE G E+L ++ L + + L K G+
Sbjct: 265 NAAAQRLAQGLEGLGGVEVLG-GTEANILFCRLDS-------AMIDALLKAGFGFYH--- 313
Query: 408 PANAENVAVLRVVVREDFSRSLVERLISHIEE 439
+ V+R V + V+ L++ +
Sbjct: 314 --DRWGPNVVRFVTSFATTAEDVDHLLNQVRL 343
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 36.3 bits (82), Expect = 0.006
Identities = 38/366 (10%), Positives = 99/366 (27%), Gaps = 55/366 (15%)
Query: 87 MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKR 145
+ P+ + N+ + VA T G+ EA + K+
Sbjct: 43 IKTPPIHDFIHNQ----LPKFLGCDVA-------RVTNGAREAKFAVMHSLAKKDAWVVM 91
Query: 146 KEQGKP-YDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTI 204
E G N+ + + + + + +
Sbjct: 92 DENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG---------EVV 142
Query: 205 CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR 264
G DVK + + ++ + + + +
Sbjct: 143 LALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA-------------IGRMPVSLK 189
Query: 265 LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI---NYLGSDQPTFTLNFSKG 321
I SGHK +G + K++ + ++ + T +
Sbjct: 190 EIGADFIVGSGHKSMAASGPIGVMG--MKEEWAEIVLRRSEKYKNKEVELLGCTARGATI 247
Query: 322 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381
+ + + + R+ + + AR +EK G ++ L+ F +
Sbjct: 248 ITLMASFPHVRERI------KRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE 301
Query: 382 DSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAV----LRVVVREDFSRSLVERLISHI 437
++EIS+ + + + + + S V+ +++
Sbjct: 302 -----VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAF 356
Query: 438 EEVLKE 443
+E++++
Sbjct: 357 KEIIEK 362
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 36.1 bits (82), Expect = 0.008
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 7/140 (5%)
Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360
V + ++ + +Q + IR + E R G++
Sbjct: 250 VADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDAR--REKLAALITRFRAGVQD 307
Query: 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVV 420
S PL+ +++E LR+ G V A P A LR+
Sbjct: 308 LPFTLADSCSAIQPLIVGD-----NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLT 362
Query: 421 VREDFSRSLVERLISHIEEV 440
+ ++RL+ +
Sbjct: 363 LTAAHEMQDIDRLLEVLHGN 382
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 35.5 bits (80), Expect = 0.011
Identities = 38/355 (10%), Positives = 92/355 (25%), Gaps = 29/355 (8%)
Query: 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI--MLAGLAFKRKWQQKRKEQ 148
+ + + L + T+V + S A+ +L +
Sbjct: 29 DYNIGVVEQIRQQLTALATAS--EGYTSV-LLQGSGSYAVEAVLGSALGPQDKVLIVSNG 85
Query: 149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAA 208
+ + +++ + A+ + T +
Sbjct: 86 AYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGML-- 143
Query: 209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLV 268
+ + + VDA S P L D+ +
Sbjct: 144 ----------------NPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSA 187
Query: 269 KSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ 328
+ V A + L + + + F+ + ++A
Sbjct: 188 NKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAF 247
Query: 329 YYQFIRLGFEGYKNIMEN-CMGNARALREGLEKTGRFEILSKDVGVP-LVAFSLKDSSAH 386
L EG N R+L G+ G +L ++ P + AF + +
Sbjct: 248 AQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQY 307
Query: 387 TVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441
E L++ G+++ + + R+ + + + L++ I +
Sbjct: 308 RFSEFYRRLKEQGFVIYPGKVSQSD----CFRIGNIGEVYAADITALLTAIRTAM 358
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 35.6 bits (81), Expect = 0.015
Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 6/124 (4%)
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVA 377
+ + LG EG + + + A L L + + A
Sbjct: 320 TTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFA 379
Query: 378 FSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHI 437
+L + L + G+ EN + E + L +
Sbjct: 380 LALPKDPE----AVRRALAERGFHGATPVPREYGEN--LALFAATELHEEEDLLALREAL 433
Query: 438 EEVL 441
+EVL
Sbjct: 434 KEVL 437
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 35.1 bits (79), Expect = 0.019
Identities = 45/375 (12%), Positives = 90/375 (24%), Gaps = 68/375 (18%)
Query: 94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD 153
+L R N +A L + V ++ + L+ + Q R +
Sbjct: 69 RDLSERLGNRLATLIGARDGE------VVVTDTTSINLFKVLSAALRVQATRS-----PE 117
Query: 154 KPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST 213
+ IVT + A L++ + + +D++T V +
Sbjct: 118 RRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELP--QAIDQDTAVVMLTHVNY 175
Query: 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV 273
TG +HD+ D A P D+
Sbjct: 176 KTG------YMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADY-------AIG 222
Query: 274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN---------------- 317
+KY G VW + + G +
Sbjct: 223 CTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQ 282
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG---VP 374
+ + F + + L E +++
Sbjct: 283 PITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS 342
Query: 375 LVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVV------REDFSRS 428
V+F + A + + L G ++ Y P ++R +
Sbjct: 343 HVSFEHPEGYA-----VIQALIDRG-VIGDYREPR------IMRFGFTPLYTTFTE---- 386
Query: 429 LVERLISHIEEVLKE 443
V + + E+L
Sbjct: 387 -VWDAVQILGEILDR 400
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 34.4 bits (77), Expect = 0.031
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 364 FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVRE 423
+ + +DV +V + E LR G + NA + +R+V +
Sbjct: 270 YSVNPEDVKTNMVILRTDNLKV-NAHGFIEALRNSGVLA-------NAVSDTEIRLVTHK 321
Query: 424 DFSRSLVERLISHIEEVLKEI 444
D SR+ +E ++ E++ ++
Sbjct: 322 DVSRNDIEEALNIFEKLFRKF 342
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 33.0 bits (73), Expect = 0.081
Identities = 29/348 (8%), Positives = 71/348 (20%), Gaps = 40/348 (11%)
Query: 93 TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY 152
+ +I L P AD G ++ ++A R W+ Q
Sbjct: 33 QDSHCAKAARLIGELLERPDAD-----VHFISGGTQTNLIACSLALRPWEAVIATQLGHI 87
Query: 153 DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS 212
+ + + + +
Sbjct: 88 STHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTT------ 141
Query: 213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSIN 272
E +L + +D A DL L
Sbjct: 142 ----EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFY 197
Query: 273 VSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF 332
+ K G + + + +
Sbjct: 198 IGATK------AGGMFGEALIILNDALKPNARHLIKQRGALM-------AKGWLLGIQFE 244
Query: 333 IRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEIS 392
+ + + + + A L+ GLE G + + L+++ E++
Sbjct: 245 VLMKDNLFFELGAHSNKMAAILKAGLEACG-IRLAW-PSASNQLFPILENTMIA---ELN 299
Query: 393 EGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440
+ + ++R+ R + ++ +
Sbjct: 300 NDFDMYTV-------EPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 30.5 bits (67), Expect = 0.51
Identities = 50/374 (13%), Positives = 101/374 (27%), Gaps = 65/374 (17%)
Query: 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
P L + +++ +++ T + T G + A+
Sbjct: 47 PAFLALMDEIQSLLRYVWQTE--NPLTIAVSG--TGTAAMEATIANAVEPGD-------- 94
Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL 210
I A + +++ + G L +A +
Sbjct: 95 ---VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVH 151
Query: 211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKS 270
T TG + ++ + +L + + T + VD + F
Sbjct: 152 AETSTGARQPLEGVGELCRE------FGTLLLVDTVT--------SLGGVPIFLDAWGVD 197
Query: 271 INVSGHKYGLVYAGVGWVVWRTKDDLPDEL----------VFHINYLGSDQPTFTLNFSK 320
+ S + GL + + + + + +
Sbjct: 198 LAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTA 257
Query: 321 GSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP-LVAFS 379
+ A + EG N + N L E LE G + K+ +P L
Sbjct: 258 PINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVC 317
Query: 380 LKDS-SAHTV---------FEISEGLRKF-GWIVPAYTMPANAENVAVLRVVVREDFSRS 428
+ D V E+ GL + G + M N+ +E
Sbjct: 318 IPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSR---------KES---- 364
Query: 429 LVERLISHIEEVLK 442
V++LI +E+VL+
Sbjct: 365 -VDQLIPALEQVLR 377
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 29.9 bits (66), Expect = 0.67
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 395 LRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEV 440
L +G V P LR ++ L+ ++ +
Sbjct: 350 LSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 29.3 bits (65), Expect = 1.3
Identities = 36/345 (10%), Positives = 92/345 (26%), Gaps = 51/345 (14%)
Query: 111 PVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF 170
A D+ V G G ++ I ++ +V A + +
Sbjct: 119 AAAKDRYIV-FGV-GVTQLIHGLVISLSPNMTATPDAPES-----KVVAHAPFYPVFREQ 171
Query: 171 ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK 230
+YF+ + N V + + + G L H ++
Sbjct: 172 TKYFDKKGYVWAG-------NAANYVNVSNPEQYIEMVTSPNNPEG-----LLRHAVIKG 219
Query: 231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW 290
I+ P Y E + K SG ++G V
Sbjct: 220 CKS-------IYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYN 272
Query: 291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGN 350
+ ++ P T S + + + + +
Sbjct: 273 NLLN--------YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE 324
Query: 351 ARA-LREGLEKTGRFEI----------LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFG 399
+ L+++ RF + + P +++ + + +
Sbjct: 325 RWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGR 384
Query: 400 -WIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKE 443
A++ V R+ + + ++ ++L+ ++++++K
Sbjct: 385 INTQNGVGFEASSRYV---RLSLIK--TQDDFDQLMYYLKDMVKA 424
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 27.8 bits (61), Expect = 1.6
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 408 PANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQG 467
A +EN E F+R V ++ ++ + E+ + + VS + I
Sbjct: 10 SARSEN---------ESFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHGYNNDP 60
Query: 468 DKPLKKSVRETQEEVTRHWKRFVKG 492
+ + SV V + G
Sbjct: 61 NGIVSISVIIEDGVVHLTVRDEGVG 85
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 27.5 bits (60), Expect = 3.4
Identities = 29/177 (16%), Positives = 47/177 (26%), Gaps = 18/177 (10%)
Query: 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKN 342
G + R K+ E+ L + F +A +
Sbjct: 29 GGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQLGPEDM 88
Query: 343 IMENCMGNARALREGLEKTGRFEILSKD-VGVPLVAFSLKDSSAHTVFEISEGLRKFGWI 401
+E A L G E L + G + + GL I
Sbjct: 89 PIEVAKEIAPNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKI 148
Query: 402 VPAYTMP-----------------ANAENVAVLRVVVREDFSRSLVERLISHIEEVL 441
V + +P + +AV+ V+ + R E L +EEVL
Sbjct: 149 VESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEVL 205
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 26.8 bits (58), Expect = 5.4
Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 5/141 (3%)
Query: 186 GYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA 245
G V + VE ++ T + + ++ L + N
Sbjct: 48 GDLVDRGAENVECLELITFPWFRAVRGN-----HEQMMIDGLSERGNVNHWLLNGGGWFF 102
Query: 246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305
LPL+ + KY + +A + + + + V
Sbjct: 103 NLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNR 162
Query: 306 YLGSDQPTFTLNFSKGSSQII 326
S+ + KG+ I
Sbjct: 163 ERISNSQNGIVKEIKGADTFI 183
>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
(ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}
Length = 431
Score = 26.5 bits (57), Expect = 9.0
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141
+ D P + V+ +A + V D + + T G++ A
Sbjct: 79 LFQDYHGLP---AFKKAMVDFMAEIRGNKVTFDPNHLVL-TAGATSANETFIFCLADPG 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,877,710
Number of extensions: 90116
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 23
Length of query: 498
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,185,626
Effective search space: 484921034
Effective search space used: 484921034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)