BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010898
         (498 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6C074|COQ4_YARLI Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Yarrowia
           lipolytica (strain CLIB 122 / E 150) GN=COQ4 PE=3 SV=1
          Length = 262

 Score = 34.3 bits (77), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 354 ALLLALQKLKVTEEQRKCAIDEYEPLVAFALSCGMYSSPAISIYTAKNVREELQEAQRDF 413
            L + L  LK   +QRK   D Y P   +AL  G  S P I++Y  + + ++ +E +RD 
Sbjct: 187 GLGMVLTPLKFKPKQRKRYFDVYLP---WALYNGFRSKPVINVYWEEVLEKDAEELRRDL 243


>sp|Q9PK91|SYV_CHLMU Valine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
           GN=valS PE=3 SV=1
          Length = 939

 Score = 33.5 bits (75), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 371 CAIDEYEPLVAFALSCGMYSSPAIS---IYTAKNVREELQEAQRDFIRASVGFSSKGKLL 427
           C I  Y   +  +   G+  S AI+   +YT +N+R E+Q   RD ++A +  S K +LL
Sbjct: 770 CMIAGYPQPIELSFPQGLRESFAIAEKLVYTIRNIRGEMQLDPRDLLQAFIISSEKKELL 829

Query: 428 ---VPKM 431
              +P M
Sbjct: 830 DACIPIM 836


>sp|A5DVZ3|COQ4_LODEL Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Lodderomyces
           elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
           NBRC 1676 / NRRL YB-4239) GN=COQ4 PE=3 SV=1
          Length = 369

 Score = 33.1 bits (74), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 13/112 (11%)

Query: 311 PVHLSSNEKLAFWINLYNALIMHAYLAYGVP-----RNDLKLFSLMQKALLLA-----LQ 360
           PV    NE+LA+    Y       +   G+P        +K+   M   + ++       
Sbjct: 192 PVRYIDNEELAYIFQRYRECHDFYHAITGLPIIIEGEISVKVLEYMNIGIPMSGLGALFA 251

Query: 361 KLKVTEEQRKCAIDEYEPLVAFALSCGMYSSPAISIYTAKNVREELQEAQRD 412
            L++   QRK   + Y P   +A+  G+YS P I++Y  K + +++ E +R+
Sbjct: 252 PLRLKPSQRKRLREIYYP---WAIKNGLYSKPLINVYWEKILDKDINEFRRE 300


>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2
           SV=2
          Length = 747

 Score = 32.3 bits (72), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 30  ELLSNIALLETTVSKLEQEMVSLHFQLSQERNERRLAEYRLRHS 73
           E  S I  LE     LE EM+SLH +L QER +  + E ++R++
Sbjct: 660 EYESRIKSLEQRNLTLETEMLSLHDELDQERKKFTMIEIKMRNA 703


>sp|Q8N264|RHG24_HUMAN Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1
           SV=2
          Length = 748

 Score = 32.3 bits (72), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 30  ELLSNIALLETTVSKLEQEMVSLHFQLSQERNERRLAEYRLRHS 73
           E  S I  LE     LE EM+SLH +L QER +  + E ++R++
Sbjct: 661 EYESRIKSLEQRNLTLETEMMSLHDELDQERKKFTMIEIKMRNA 704


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.129    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,192,289
Number of Sequences: 539616
Number of extensions: 6389499
Number of successful extensions: 17826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 17560
Number of HSP's gapped (non-prelim): 148
length of query: 498
length of database: 191,569,459
effective HSP length: 122
effective length of query: 376
effective length of database: 125,736,307
effective search space: 47276851432
effective search space used: 47276851432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)