Query 010898
Match_columns 498
No_of_seqs 251 out of 522
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_B P2F; coiled coil domain 73.3 1.9 6.4E-05 27.5 2.0 20 28-47 9-28 (28)
2 1kd8_A GABH AIV, GCN4 acid bas 70.7 5.8 0.0002 27.4 4.1 24 26-49 8-31 (36)
3 3he5_A Synzip1; heterodimeric 64.2 13 0.00045 26.4 5.0 20 35-54 5-24 (49)
4 3m48_A General control protein 63.4 7.4 0.00025 26.4 3.4 24 24-47 5-28 (33)
5 2xus_A Breast cancer metastasi 54.7 12 0.00042 27.7 3.6 22 41-62 14-35 (49)
6 2wq1_A General control protein 54.7 18 0.00061 24.5 4.1 23 25-47 6-28 (33)
7 1uo4_A General control protein 54.1 13 0.00045 25.3 3.4 23 25-47 7-29 (34)
8 3ra3_A P1C; coiled coil domain 53.5 6.3 0.00021 25.1 1.6 23 34-56 1-23 (28)
9 1g6u_A Domain swapped dimer; d 52.7 19 0.00064 25.5 4.1 24 33-56 20-43 (48)
10 1t2k_D Cyclic-AMP-dependent tr 52.2 25 0.00086 26.5 5.3 28 28-55 31-58 (61)
11 4dzn_A Coiled-coil peptide CC- 50.8 30 0.001 22.8 4.5 25 31-55 7-31 (33)
12 4dzn_A Coiled-coil peptide CC- 48.8 25 0.00085 23.1 3.9 23 34-56 3-25 (33)
13 3c3f_A Alpha/beta peptide with 48.1 19 0.00064 24.5 3.4 23 25-47 7-29 (34)
14 1uii_A Geminin; human, DNA rep 47.9 24 0.00084 28.8 4.7 37 4-54 38-74 (83)
15 3viq_B Mating-type switching p 46.8 18 0.00063 29.7 3.9 28 29-56 4-31 (85)
16 1ci6_A Transcription factor AT 45.2 43 0.0015 25.6 5.6 27 27-53 31-57 (63)
17 1kd8_B GABH BLL, GCN4 acid bas 43.7 33 0.0011 23.7 4.1 25 25-49 7-31 (36)
18 1nkp_B MAX protein, MYC proto- 40.7 43 0.0015 26.6 5.3 30 27-56 48-77 (83)
19 1zme_C Proline utilization tra 40.7 24 0.00082 26.6 3.6 22 35-56 46-67 (70)
20 4dac_A Computationally designe 40.6 25 0.00086 22.3 2.9 22 29-50 4-25 (28)
21 2pnv_A Small conductance calci 40.0 25 0.00086 25.2 3.3 27 30-56 9-39 (43)
22 3c3g_A Alpha/beta peptide with 39.2 32 0.0011 23.3 3.4 22 26-47 7-28 (33)
23 2oxj_A Hybrid alpha/beta pepti 39.2 31 0.0011 23.5 3.4 23 25-47 7-29 (34)
24 2r2v_A GCN4 leucine zipper; co 37.3 35 0.0012 23.3 3.4 23 25-47 7-29 (34)
25 2dgc_A Protein (GCN4); basic d 37.1 41 0.0014 25.8 4.3 31 27-57 31-61 (63)
26 2wvr_A Geminin; DNA replicatio 35.6 39 0.0013 31.9 4.7 38 4-55 107-144 (209)
27 3he4_A Synzip6; heterodimeric 34.3 35 0.0012 24.8 3.2 18 36-53 34-51 (56)
28 1wlq_A Geminin; coiled-coil; 2 34.0 45 0.0015 27.2 4.2 37 4-54 30-66 (83)
29 2e50_A Protein SET; histone ch 33.8 63 0.0022 30.7 6.1 42 22-63 22-74 (225)
30 1hjb_A Ccaat/enhancer binding 33.6 53 0.0018 26.9 4.7 30 27-56 44-73 (87)
31 2aze_B Transcription factor E2 33.0 52 0.0018 27.8 4.8 36 22-57 2-37 (106)
32 2wuj_A Septum site-determining 31.7 24 0.00083 26.5 2.2 19 35-53 36-54 (57)
33 1jnm_A Proto-oncogene C-JUN; B 31.4 33 0.0011 26.0 3.0 28 28-55 24-51 (62)
34 1lq7_A Alpha3W; three helix bu 30.6 24 0.00083 26.5 2.0 18 34-51 49-66 (67)
35 3ph0_C ASCG; type III secretio 29.6 73 0.0025 24.3 4.5 13 26-38 3-15 (61)
36 2yy0_A C-MYC-binding protein; 29.2 1.1E+02 0.0038 22.6 5.4 35 22-56 15-49 (53)
37 2wt7_B Transcription factor MA 28.9 1.6E+02 0.0055 24.2 6.9 38 32-69 47-84 (90)
38 3fs3_A Nucleosome assembly pro 28.6 91 0.0031 31.9 6.5 42 22-63 45-97 (359)
39 2bni_A General control protein 28.5 59 0.002 22.1 3.4 23 25-47 7-29 (34)
40 2wt7_A Proto-oncogene protein 28.4 1.2E+02 0.004 23.0 5.6 29 28-56 25-53 (63)
41 1ci6_A Transcription factor AT 28.3 1E+02 0.0035 23.4 5.3 30 27-56 24-53 (63)
42 2hy6_A General control protein 28.1 85 0.0029 21.4 4.1 24 24-47 6-29 (34)
43 1gu4_A CAAT/enhancer binding p 28.1 39 0.0013 27.1 3.0 26 28-53 45-70 (78)
44 3he5_A Synzip1; heterodimeric 27.4 82 0.0028 22.3 4.1 28 29-56 6-47 (49)
45 2l5g_B Putative uncharacterize 26.3 1.1E+02 0.0038 21.8 4.6 27 30-56 6-32 (42)
46 1t2k_D Cyclic-AMP-dependent tr 25.9 1.3E+02 0.0044 22.4 5.5 29 28-56 24-52 (61)
47 1zme_C Proline utilization tra 25.8 59 0.002 24.3 3.6 23 27-49 45-67 (70)
48 1jnm_A Proto-oncogene C-JUN; B 24.4 1.2E+02 0.0043 22.7 5.1 22 35-56 24-45 (62)
49 4g2k_A General control protein 23.7 2.1E+02 0.007 24.9 6.8 44 23-66 18-61 (125)
50 3swy_A Cyclic nucleotide-gated 23.5 1E+02 0.0035 22.4 4.1 28 37-69 2-29 (46)
51 2er8_A Regulatory protein Leu3 23.2 36 0.0012 25.8 1.9 21 33-53 49-69 (72)
52 1dh3_A Transcription factor CR 22.9 1.3E+02 0.0043 22.3 4.8 23 34-56 23-45 (55)
53 2wt7_A Proto-oncogene protein 22.7 1.5E+02 0.0051 22.4 5.3 29 27-55 31-59 (63)
54 2jee_A YIIU; FTSZ, septum, coi 22.5 2.2E+02 0.0074 23.0 6.4 32 25-56 12-43 (81)
55 2wuj_A Septum site-determining 22.5 62 0.0021 24.2 3.0 20 29-48 37-56 (57)
56 4etp_A Kinesin-like protein KA 22.0 1.7E+02 0.0057 30.1 7.2 39 27-65 11-49 (403)
57 4g1a_A AQ-C16C19 peptide; heli 21.6 33 0.0011 22.4 1.1 22 35-56 2-23 (32)
58 3kyp_A Pfnaps, nucleosome asse 21.4 1.5E+02 0.0052 27.3 6.1 37 27-63 4-44 (193)
59 1dh3_A Transcription factor CR 21.1 1.1E+02 0.0038 22.7 4.1 29 27-55 23-51 (55)
60 1a93_B MAX protein, coiled coi 21.0 1.2E+02 0.0042 20.7 3.8 28 25-52 6-33 (34)
61 2lw9_A Unconventionnal myosin- 20.6 70 0.0024 23.5 2.7 17 40-56 6-22 (51)
62 2lw1_A ABC transporter ATP-bin 20.4 1E+02 0.0034 24.8 4.1 25 32-56 21-45 (89)
63 1kd8_A GABH AIV, GCN4 acid bas 20.4 1.6E+02 0.0054 20.3 4.3 28 29-56 4-31 (36)
64 2uwj_G Type III export protein 20.2 64 0.0022 27.6 2.9 13 26-38 3-15 (115)
No 1
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=73.32 E-value=1.9 Score=27.47 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010898 28 AQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 28 ~~eLlaeiAvLE~eV~~LE~ 47 (498)
--.|-.|||.||-||.-|||
T Consensus 9 narlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHhcC
Confidence 34577899999999999986
No 2
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=70.74 E-value=5.8 Score=27.35 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 26 HEAQELLSNIALLETTVSKLEQEM 49 (498)
Q Consensus 26 ~~~~eLlaeiAvLE~eV~~LE~~v 49 (498)
.++.|||.+..-||.||.||.+-+
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 567788888888888888877644
No 3
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.22 E-value=13 Score=26.40 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010898 35 IALLETTVSKLEQEMVSLHF 54 (498)
Q Consensus 35 iAvLE~eV~~LE~~v~~l~~ 54 (498)
||.||.||+-||.+-.+|+.
T Consensus 5 vaqlenevaslenenetlkk 24 (49)
T 3he5_A 5 VAQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHH
Confidence 34555555555555554443
No 4
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.45 E-value=7.4 Score=26.41 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 010898 24 FSHEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 24 lP~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
|-.++.|||.|-.-||.||.||-.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345788999999999999999853
No 5
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=54.74 E-value=12 Score=27.66 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010898 41 TVSKLEQEMVSLHFQLSQERNE 62 (498)
Q Consensus 41 eV~~LE~~v~~l~~~l~qe~~~ 62 (498)
+++.||+|-..|+-+||+||..
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl~ 35 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERLS 35 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566779999999999999866
No 6
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=54.73 E-value=18 Score=24.49 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
-.++.|||.+..-||.||.||-+
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35788999999999999999854
No 7
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=54.14 E-value=13 Score=25.32 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
-.++.|||.+-.-||.||.||-+
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35788999999999999999854
No 8
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.51 E-value=6.3 Score=25.07 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010898 34 NIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 34 eiAvLE~eV~~LE~~v~~l~~~l 56 (498)
||..||-|---|||++-.|+|++
T Consensus 1 eidalefendaleqkiaalkqki 23 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHH
Confidence 45678888889999999998877
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=52.68 E-value=19 Score=25.53 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 33 SNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 33 aeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
.|+|.||-|..-||+++-.|+.+|
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999998776
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.24 E-value=25 Score=26.51 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 28 AQELLSNIALLETTVSKLEQEMVSLHFQ 55 (498)
Q Consensus 28 ~~eLlaeiAvLE~eV~~LE~~v~~l~~~ 55 (498)
+.+|-.|-..|+.+|..|++++..|++.
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555443
No 11
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=50.79 E-value=30 Score=22.77 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 31 LLSNIALLETTVSKLEQEMVSLHFQ 55 (498)
Q Consensus 31 LlaeiAvLE~eV~~LE~~v~~l~~~ 55 (498)
|-.|||.|..||.-|.=++-.|+|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444444444444444443
No 12
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.79 E-value=25 Score=23.13 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010898 34 NIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 34 eiAvLE~eV~~LE~~v~~l~~~l 56 (498)
|||.|..||.-|.+++-.|++.+
T Consensus 3 eiaalkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888766
No 13
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.14 E-value=19 Score=24.51 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
-.++.|||.+-.-||.||.||-.
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 35788999999999999999854
No 14
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.88 E-value=24 Score=28.77 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 4 HVSLENAIKKNTMKLSSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLHF 54 (498)
Q Consensus 4 h~aLerA~~~~~~~L~~~~~lP~~~~eLlaeiAvLE~eV~~LE~~v~~l~~ 54 (498)
|.||+.||.- -..|-.+|..|++||..|.+....|+-
T Consensus 38 R~AL~eaL~E--------------N~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 38 RKALYEALKE--------------NEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666653 367888888888888888888887763
No 15
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=46.83 E-value=18 Score=29.65 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 29 ~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
..|-++|+.|++++..||+++..+.-+|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888888888888888888887544
No 16
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.17 E-value=43 Score=25.56 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLH 53 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~ 53 (498)
++.+|=.+.+.|+.+|..|+.++..|+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.72 E-value=33 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQEM 49 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~~v 49 (498)
-.++.|||.+-.-||.||.||-+-+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3578899999999999999886544
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.73 E-value=43 Score=26.58 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
+++.|-.++..|+.|+..|.++...|.++|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777777666
No 19
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=40.70 E-value=24 Score=26.55 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010898 35 IALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 35 iAvLE~eV~~LE~~v~~l~~~l 56 (498)
|..||.+|..||++|..|+..|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777776544
No 20
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=40.61 E-value=25 Score=22.32 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010898 29 QELLSNIALLETTVSKLEQEMV 50 (498)
Q Consensus 29 ~eLlaeiAvLE~eV~~LE~~v~ 50 (498)
-.|=|++.-||.||-+||-+|-
T Consensus 4 ykldanvkrlekevgklegeva 25 (28)
T 4dac_A 4 YKLDANVKRLEKEVGKLEGEVA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeccccHHHHHHHHhhhhhhhh
Confidence 3456677777777777776653
No 21
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=40.03 E-value=25 Score=25.23 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=22.7
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 010898 30 ELLSNI----ALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 30 eLlaei----AvLE~eV~~LE~~v~~l~~~l 56 (498)
+|+.|+ ..||+-|..||.++.+|..+|
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 579999999999999999877
No 22
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.23 E-value=32 Score=23.30 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010898 26 HEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 26 ~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
.++.|||.+=.-||.||.||-.
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 5788999999999999998854
No 23
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.21 E-value=31 Score=23.47 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
-.++.|||.|=.-||.||.+|-.
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 35788999999999999998854
No 24
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=37.26 E-value=35 Score=23.26 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
-.++.|||.+---||.||.||-+
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 45788999999999999998854
No 25
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.11 E-value=41 Score=25.78 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l~ 57 (498)
.+.+|=.+|+.|+.|-..|+.+|..|+..+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888888888876663
No 26
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.56 E-value=39 Score=31.90 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.3
Q ss_pred HHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 4 HVSLENAIKKNTMKLSSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLHFQ 55 (498)
Q Consensus 4 h~aLerA~~~~~~~L~~~~~lP~~~~eLlaeiAvLE~eV~~LE~~v~~l~~~ 55 (498)
|.||+.||.- -.+|-.+|..|++||..|.+....|+--
T Consensus 107 R~AL~eaLeE--------------N~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 107 RKALYEALKE--------------NEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777754 3678889999999999999999888743
No 27
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.35 E-value=35 Score=24.84 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010898 36 ALLETTVSKLEQEMVSLH 53 (498)
Q Consensus 36 AvLE~eV~~LE~~v~~l~ 53 (498)
|-||..|.+||+.+-+|-
T Consensus 34 anlekdianlekdianle 51 (56)
T 3he4_A 34 ANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 28
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.99 E-value=45 Score=27.22 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=28.4
Q ss_pred HHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 4 HVSLENAIKKNTMKLSSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLHF 54 (498)
Q Consensus 4 h~aLerA~~~~~~~L~~~~~lP~~~~eLlaeiAvLE~eV~~LE~~v~~l~~ 54 (498)
|.||+.||.-+ ..|-.+|..+++||..|.+....|+-
T Consensus 30 r~AL~eaL~EN--------------~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 30 RKALYEALKEN--------------EKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677766533 56888899999999999988888874
No 29
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=33.83 E-value=63 Score=30.74 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 010898 22 SCFSHEAQELLSNIALLE-----------TTVSKLEQEMVSLHFQLSQERNER 63 (498)
Q Consensus 22 ~~lP~~~~eLlaeiAvLE-----------~eV~~LE~~v~~l~~~l~qe~~~~ 63 (498)
...|...++.|.++..+. +||..||++-..+|+-||++|.+.
T Consensus 22 ~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eI 74 (225)
T 2e50_A 22 ETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSEL 74 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 456666666666555443 456677777778888899999774
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.57 E-value=53 Score=26.94 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
.+.+|-+|=+.|+.+|..|++++..|+.-|
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666555444
No 31
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.00 E-value=52 Score=27.81 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 22 SCFSHEAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (498)
Q Consensus 22 ~~lP~~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l~ 57 (498)
+.+..+...|=+||+-|+.+=..|.+++..++++|-
T Consensus 2 ~~~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 2 SHMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999883
No 32
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.67 E-value=24 Score=26.46 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010898 35 IALLETTVSKLEQEMVSLH 53 (498)
Q Consensus 35 iAvLE~eV~~LE~~v~~l~ 53 (498)
++.|..|+..|++++..|.
T Consensus 36 ~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 36 YEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.39 E-value=33 Score=25.96 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 28 AQELLSNIALLETTVSKLEQEMVSLHFQ 55 (498)
Q Consensus 28 ~~eLlaeiAvLE~eV~~LE~~v~~l~~~ 55 (498)
+.+|-.++..||.+-..|..+|..|+..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 34
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.58 E-value=24 Score=26.51 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010898 34 NIALLETTVSKLEQEMVS 51 (498)
Q Consensus 34 eiAvLE~eV~~LE~~v~~ 51 (498)
|+.-+|+||.+||+++..
T Consensus 49 evkkveeevkkleeeikk 66 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 456789999999998754
No 35
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=29.64 E-value=73 Score=24.32 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 010898 26 HEAQELLSNIALL 38 (498)
Q Consensus 26 ~~~~eLlaeiAvL 38 (498)
.+.+.||||||+.
T Consensus 3 ~~l~~lLAe~AL~ 15 (61)
T 3ph0_C 3 VQLKKQLAELALA 15 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678899999986
No 36
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.21 E-value=1.1e+02 Score=22.62 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 22 SCFSHEAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 22 ~~lP~~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
..-+..+-.|.+|++-|-.+|..|.+++-.|+.+|
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999998877
No 37
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.92 E-value=1.6e+02 Score=24.25 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 010898 32 LSNIALLETTVSKLEQEMVSLHFQLSQERNERRLAEYR 69 (498)
Q Consensus 32 laeiAvLE~eV~~LE~~v~~l~~~l~qe~~~~~~~~~~ 69 (498)
+.++..||.|+..|-.++..|++.+.+=..++.....+
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998876555554443333
No 38
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=28.63 E-value=91 Score=31.94 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Q 010898 22 SCFSHEAQELLSNIALLET-----------TVSKLEQEMVSLHFQLSQERNER 63 (498)
Q Consensus 22 ~~lP~~~~eLlaeiAvLE~-----------eV~~LE~~v~~l~~~l~qe~~~~ 63 (498)
..||+.+++=|..+.-|+. ||..||++-..+|+-||+.|.+.
T Consensus 45 ~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eI 97 (359)
T 3fs3_A 45 TDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREA 97 (359)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6799988865555554443 45566666677888899998874
No 39
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.54 E-value=59 Score=22.13 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
-.++.|||.+=.-||.||.||-+
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHH
Confidence 35788999999999999998853
No 40
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.40 E-value=1.2e+02 Score=22.99 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 28 ~~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
+.+|-.++..||.+-..|..+|..|+..+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655443
No 41
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.34 E-value=1e+02 Score=23.42 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
.+.+|-.++..||.+...|+.+|..|...+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888887777655
No 42
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.14 E-value=85 Score=21.36 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 010898 24 FSHEAQELLSNIALLETTVSKLEQ 47 (498)
Q Consensus 24 lP~~~~eLlaeiAvLE~eV~~LE~ 47 (498)
|-.++.|||.+=.-||.||.||-+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345788999999999999998854
No 43
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=28.11 E-value=39 Score=27.14 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 28 AQELLSNIALLETTVSKLEQEMVSLH 53 (498)
Q Consensus 28 ~~eLlaeiAvLE~eV~~LE~~v~~l~ 53 (498)
+.+|-+|=+.|+.+|..|++++..|+
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554
No 44
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.36 E-value=82 Score=22.32 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q 010898 29 QELLSNIALLETT--------------VSKLEQEMVSLHFQL 56 (498)
Q Consensus 29 ~eLlaeiAvLE~e--------------V~~LE~~v~~l~~~l 56 (498)
-.|=.|||.||.| |++||+++-+||.++
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4567899999987 556666666666544
No 45
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.30 E-value=1.1e+02 Score=21.80 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 30 ELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 30 eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
|||.-|.-+--||.+-|+++..|+-++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888888888655
No 46
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.92 E-value=1.3e+02 Score=22.44 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 28 ~~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
+.+|=.++..||.+-..|+.+|..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666554
No 47
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.81 E-value=59 Score=24.28 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEM 49 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v 49 (498)
.+.+|-..|+.||.+|..|+..|
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999998865
No 48
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.44 E-value=1.2e+02 Score=22.66 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010898 35 IALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 35 iAvLE~eV~~LE~~v~~l~~~l 56 (498)
|.-||.+|..||.+-..|...+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 49
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=23.73 E-value=2.1e+02 Score=24.92 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010898 23 CFSHEAQELLSNIALLETTVSKLEQEMVSLHFQLSQERNERRLA 66 (498)
Q Consensus 23 ~lP~~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l~qe~~~~~~~ 66 (498)
.|-.++.|+|.-|--+|.||++|.+-|-+|=-.|-+-.|.+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~a 61 (125)
T 4g2k_A 18 QIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKS 61 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999999988887777776444
No 50
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.47 E-value=1e+02 Score=22.36 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 010898 37 LLETTVSKLEQEMVSLHFQLSQERNERRLAEYR 69 (498)
Q Consensus 37 vLE~eV~~LE~~v~~l~~~l~qe~~~~~~~~~~ 69 (498)
-|||-|.+||.-|..|+-.+ .|.++||.
T Consensus 2 dlEekv~~Le~~ld~LqTr~-----ArLlae~~ 29 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRF-----ARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 37899999999998888766 55666665
No 51
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=23.15 E-value=36 Score=25.76 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010898 33 SNIALLETTVSKLEQEMVSLH 53 (498)
Q Consensus 33 aeiAvLE~eV~~LE~~v~~l~ 53 (498)
..|+.||.+|..||+.|..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667788888888888776553
No 52
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.89 E-value=1.3e+02 Score=22.33 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010898 34 NIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 34 eiAvLE~eV~~LE~~v~~l~~~l 56 (498)
-|.-||.+|..||++-..|+.++
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655554
No 53
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.73 E-value=1.5e+02 Score=22.36 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQ 55 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~ 55 (498)
++..|=.+-+.|..+|..|++++..|..-
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555443
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.48 E-value=2.2e+02 Score=23.04 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
=.+++.+|..|++|..||--|.++-..|-++.
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999998888887766543
No 55
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.48 E-value=62 Score=24.17 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010898 29 QELLSNIALLETTVSKLEQE 48 (498)
Q Consensus 29 ~eLlaeiAvLE~eV~~LE~~ 48 (498)
.+|++|++-|++++.+||++
T Consensus 37 ~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 37 EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44566666666666666554
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.00 E-value=1.7e+02 Score=30.11 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLSQERNERRL 65 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l~qe~~~~~~ 65 (498)
+..+|-.+++-||++|..+|+++..+..++.+|...|+.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~ 49 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRT 49 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777777666544
No 57
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=21.60 E-value=33 Score=22.40 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010898 35 IALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 35 iAvLE~eV~~LE~~v~~l~~~l 56 (498)
||.||..|.-|||+--..-|++
T Consensus 2 iaaleqkiaaleqkcaaceqki 23 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKI 23 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776655544443
No 58
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=21.37 E-value=1.5e+02 Score=27.34 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q 010898 27 EAQELLSNIALLET----TVSKLEQEMVSLHFQLSQERNER 63 (498)
Q Consensus 27 ~~~eLlaeiAvLE~----eV~~LE~~v~~l~~~l~qe~~~~ 63 (498)
..++|=.|+..||+ |+..||++-..+|+-+|+.|.+.
T Consensus 4 ~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~i 44 (193)
T 3kyp_A 4 DFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEI 44 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 45566677777775 58899999999999999999884
No 59
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.12 E-value=1.1e+02 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQ 55 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~ 55 (498)
++.+|=.+|+.||.|-..|.+++..|...
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999988754
No 60
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.00 E-value=1.2e+02 Score=20.66 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQEMVSL 52 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~~v~~l 52 (498)
=.+..+.-++|.-|+..-..||+||-.|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3466778888888888888888887554
No 61
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.59 E-value=70 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010898 40 TTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 40 ~eV~~LE~~v~~l~~~l 56 (498)
|||.+||..+-.|+++-
T Consensus 6 EEILRLErEIE~Lqrqk 22 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMK 22 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57778888888887654
No 62
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.41 E-value=1e+02 Score=24.84 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 32 LSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 32 laeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
=.|+.-||.+|..||+++-.|..+|
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777776665
No 63
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.40 E-value=1.6e+02 Score=20.28 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 29 ~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
..|=+.|.-|..+...||.+|..|+--|
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3566788889999999999999988544
No 64
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=20.23 E-value=64 Score=27.61 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 010898 26 HEAQELLSNIALL 38 (498)
Q Consensus 26 ~~~~eLlaeiAvL 38 (498)
++.+.||||||+.
T Consensus 3 ~~l~~lLAE~AL~ 15 (115)
T 2uwj_G 3 TSLIRELAELALA 15 (115)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678899999986
Done!