Query 010898
Match_columns 498
No_of_seqs 251 out of 522
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 16:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nlwa_ a.38.1.1 (A:) Mad prot 24.9 55 0.004 23.7 5.3 28 29-56 50-77 (79)
2 d1wu9a1 a.245.1.1 (A:191-249) 24.7 52 0.0038 23.3 4.8 28 27-55 2-29 (59)
3 d1hywa_ d.186.1.1 (A:) Head-to 23.9 16 0.0012 26.0 1.7 28 282-309 26-53 (58)
4 d2azeb1 e.63.1.2 (B:201-301) T 23.3 61 0.0044 25.2 5.5 31 27-57 2-32 (101)
5 d1seta1 a.2.7.1 (A:1-110) Sery 20.9 1.1E+02 0.0082 23.2 6.7 34 25-58 63-96 (110)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 19.7 89 0.0065 22.9 5.6 25 32-56 51-75 (88)
7 d1khba1 c.91.1.1 (A:260-622) C 16.0 13 0.00091 35.9 -0.5 58 412-483 233-301 (363)
8 d2bz1a1 c.144.1.1 (A:1-174) GT 15.9 49 0.0036 27.9 3.6 45 376-420 27-85 (174)
9 d1v74b_ a.24.20.1 (B:) Colicin 15.1 38 0.0028 25.9 2.2 18 179-196 37-54 (87)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 14.2 84 0.0061 24.6 4.4 30 27-56 2-31 (133)
No 1
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.90 E-value=55 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 29 ~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
+.|-.++..|+.++..|..+...|+++|
T Consensus 50 ~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 50 KKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555444
No 2
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.70 E-value=52 Score=23.29 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQ 55 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~ 55 (498)
++.+|-.||+-|...|..||++ -+||++
T Consensus 2 e~~~L~~ei~elk~~v~~lEkE-RdFYF~ 29 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKE-RDFYFG 29 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5678999999999999999998 677764
No 3
>d1hywa_ d.186.1.1 (A:) Head-to-tail joining protein W, gpW {Bacteriophage lambda [TaxId: 10710]}
Probab=23.89 E-value=16 Score=25.95 Aligned_cols=28 Identities=7% Similarity=0.318 Sum_probs=24.1
Q ss_pred eecCcchhhhhhhhHHHHHHHHHHHhcc
Q 010898 282 MSVGKQQLEYASGALKTFRTLVEQLAKV 309 (498)
Q Consensus 282 ~s~d~~~~~y~s~~l~~f~~ll~~L~~v 309 (498)
+..|++++.|....+..++.|+.+|+.+
T Consensus 26 vqKDGr~Veytaasi~eL~~yI~~lE~~ 53 (58)
T d1hywa_ 26 VQKDGRRVEFTATSVSDLKKYIAELEVQ 53 (58)
T ss_dssp EECSSCEEEECTTTHHHHHHHHHHHHHH
T ss_pred EecCCcEEEEeccCHHHHHHHHHHHHHH
Confidence 4678899999988889999999999764
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.33 E-value=61 Score=25.16 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l~ 57 (498)
+.+.|=+||+-|+.+-..|.+++..+.++|.
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~ 32 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLR 32 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999884
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=20.86 E-value=1.1e+02 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 25 SHEAQELLSNIALLETTVSKLEQEMVSLHFQLSQ 58 (498)
Q Consensus 25 P~~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l~q 58 (498)
+..+.+|++|+..|-.+|..||+++..+..++..
T Consensus 63 ~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 63 PEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998877753
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.67 E-value=89 Score=22.94 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 32 LSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 32 laeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
+.-|-.|+.++..|++++..|+++.
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~ 75 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777766666666544
No 7
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.00 E-value=13 Score=35.86 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHhccccccCCeEEechhhH--Hhhcc----C-----CCCchHHHHHHhhCCHHHHHHHHHHHHhhhhccCCCcceEE
Q 010898 412 DFIRASVGFSSKGKLLVPKMLH--CFCKG----S-----VDDANLAVWISHYLPPLQAAFVEQCISQRRQSFLGSRNCGI 480 (498)
Q Consensus 412 efl~~~v~v~~~~kV~LpKIf~--wY~~D----F-----~~~~~ll~~I~~ylp~~~~~~i~~~l~~~~~~~~~~~~ve~ 480 (498)
+|+++-..+-.+..-.+||||+ ||++| | |++.-+|+||...+..... . ....|.|
T Consensus 233 dY~~hWL~~g~~~~~k~PkIF~VNWFrKd~~GkFLWPGfGeN~RVLkWI~~Rv~G~~~-A-------------~eTPIG~ 298 (363)
T d1khba1 233 KYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKAS-T-------------KLTPIGY 298 (363)
T ss_dssp HHHHHHHHGGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTC--C-E-------------EEETTEE
T ss_pred HHHHHHHhhhcccccCCCcEEEEEeeeecCCCCccCCCcchhhHHHHHHHHHhcCCcc-c-------------cccCcee
Confidence 4555543332211234899986 99887 2 2345799999987765321 0 1345888
Q ss_pred ecc
Q 010898 481 LPF 483 (498)
Q Consensus 481 ~pY 483 (498)
+|+
T Consensus 299 vP~ 301 (363)
T d1khba1 299 IPK 301 (363)
T ss_dssp EEC
T ss_pred ccC
Confidence 887
No 8
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
Probab=15.94 E-value=49 Score=27.88 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=29.9
Q ss_pred CCcceeeeeccCCCC--CCC-ccccchhhH-----------HHHHHHHHHHHHHhcccc
Q 010898 376 YEPLVAFALSCGMYS--SPA-ISIYTAKNV-----------REELQEAQRDFIRASVGF 420 (498)
Q Consensus 376 ~dPrIhFAL~cGs~S--~P~-lrvYta~~l-----------~~qLe~A~refl~~~v~v 420 (498)
.|..+||||+.|.++ .|+ |||-...-+ ..||++|.+..-+...||
T Consensus 27 ~~~~~HlALvkG~i~~~~~vlVRVHs~~~~~Dv~~~~~~~~~~~L~~al~~I~~~g~Gv 85 (174)
T d2bz1a1 27 ATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGI 85 (174)
T ss_dssp TTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHHTSEE
T ss_pred CCCeEEEEEEEcCcccccceeEEeeecccccceecccccccchhHHHHHHHHHHcCCcE
Confidence 578899999999764 344 486544333 357877777666655554
No 9
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=15.15 E-value=38 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=15.8
Q ss_pred CCcccHHHHhHHHHHHHH
Q 010898 179 PNQLSEEMVRCMKNIFMS 196 (498)
Q Consensus 179 PN~LSEemvrC~~~Iy~~ 196 (498)
-++++.++-.|++.|||-
T Consensus 37 ~~~~~~~l~eClssiF~~ 54 (87)
T d1v74b_ 37 VKDLSPNILNCGEELFMA 54 (87)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHH
Confidence 457789999999999996
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.20 E-value=84 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.378 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010898 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (498)
Q Consensus 27 ~~~eLlaeiAvLE~eV~~LE~~v~~l~~~l 56 (498)
+..||.+.+.+|+.++-.|++++..|...+
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~ 31 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATI 31 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999998766
Done!