Query 010900
Match_columns 498
No_of_seqs 275 out of 2014
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 7.2E-56 1.6E-60 438.8 54.3 436 42-481 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 1.8E-52 3.9E-57 418.7 55.3 436 39-477 21-467 (478)
3 PRK00187 multidrug efflux prot 100.0 7.7E-51 1.7E-55 407.0 56.2 432 41-475 4-447 (464)
4 PRK10367 DNA-damage-inducible 100.0 2.2E-48 4.7E-53 385.7 53.9 423 43-476 5-434 (441)
5 PRK01766 multidrug efflux prot 100.0 3.2E-48 6.9E-53 389.6 55.3 433 41-476 6-446 (456)
6 PRK09575 vmrA multidrug efflux 100.0 1.4E-48 3E-53 390.2 52.3 427 43-475 8-438 (453)
7 TIGR01695 mviN integral membra 100.0 1.1E-36 2.4E-41 310.7 49.9 413 49-472 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 3.5E-36 7.5E-41 306.1 47.7 413 50-471 2-433 (488)
9 TIGR00797 matE putative efflux 100.0 7.6E-36 1.7E-40 289.3 42.2 337 55-394 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 1.2E-34 2.6E-39 287.8 46.6 404 49-471 3-411 (416)
11 KOG1347 Uncharacterized membra 100.0 2.9E-36 6.4E-41 296.0 34.1 449 43-492 24-472 (473)
12 PF03023 MVIN: MviN-like prote 100.0 1.1E-29 2.3E-34 252.4 49.3 386 77-472 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 3.3E-28 7.1E-33 237.0 49.3 419 46-472 6-437 (518)
14 PRK10459 colanic acid exporter 100.0 7.2E-28 1.6E-32 244.8 46.7 398 46-471 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 5.6E-26 1.2E-30 230.5 41.5 404 45-470 4-409 (480)
16 PRK00187 multidrug efflux prot 99.9 5.2E-21 1.1E-25 191.9 27.7 208 40-248 229-443 (464)
17 COG0534 NorM Na+-driven multid 99.9 7.9E-21 1.7E-25 188.8 25.9 210 38-249 232-443 (455)
18 PRK10189 MATE family multidrug 99.9 3.7E-20 8.1E-25 185.8 28.7 212 41-253 253-466 (478)
19 PRK10367 DNA-damage-inducible 99.9 4.4E-20 9.6E-25 183.5 27.4 206 264-471 6-211 (441)
20 PRK01766 multidrug efflux prot 99.9 2E-19 4.4E-24 181.0 28.5 207 263-472 8-218 (456)
21 PRK09575 vmrA multidrug efflux 99.9 1.1E-19 2.3E-24 182.1 25.8 205 264-471 9-214 (453)
22 TIGR01695 mviN integral membra 99.8 5E-17 1.1E-21 166.1 31.5 205 42-248 218-427 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 4.3E-16 9.4E-21 145.8 33.4 271 49-335 1-272 (273)
24 TIGR00797 matE putative efflux 99.8 3.1E-16 6.7E-21 152.0 26.2 194 275-471 1-196 (342)
25 TIGR02900 spore_V_B stage V sp 99.7 8E-16 1.7E-20 156.7 25.1 203 41-248 219-433 (488)
26 PF01554 MatE: MatE; InterPro 99.7 5.1E-18 1.1E-22 145.6 7.0 162 275-438 1-162 (162)
27 PF03023 MVIN: MviN-like prote 99.7 9.7E-15 2.1E-19 145.5 30.7 206 42-249 193-403 (451)
28 PF01554 MatE: MatE; InterPro 99.7 5.3E-18 1.1E-22 145.5 5.0 160 55-215 1-162 (162)
29 PRK15099 O-antigen translocase 99.7 2.9E-14 6.3E-19 141.8 25.8 202 40-248 208-411 (416)
30 PRK10459 colanic acid exporter 99.7 3.8E-13 8.3E-18 137.0 34.4 201 42-248 202-404 (492)
31 COG0728 MviN Uncharacterized m 99.7 1E-12 2.2E-17 129.1 34.5 206 42-249 227-437 (518)
32 PF13440 Polysacc_synt_3: Poly 99.6 1.2E-12 2.6E-17 121.0 31.8 247 65-334 2-250 (251)
33 COG2244 RfbX Membrane protein 99.5 2.4E-12 5.2E-17 130.8 26.1 187 42-234 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.3 1.1E-08 2.4E-13 102.9 31.8 418 51-471 5-469 (549)
35 KOG1347 Uncharacterized membra 99.2 8.5E-10 1.8E-14 109.4 19.6 205 263-471 24-229 (473)
36 KOG2864 Nuclear division RFT1 99.0 6.2E-06 1.3E-10 78.0 35.0 414 46-471 7-448 (530)
37 PF07260 ANKH: Progressive ank 99.0 1.3E-06 2.7E-11 79.0 28.9 260 43-311 7-283 (345)
38 PF04506 Rft-1: Rft protein; 98.5 3E-05 6.4E-10 78.5 21.8 203 46-249 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 5.2E-05 1.1E-09 63.3 17.6 79 169-249 2-80 (146)
40 PF14667 Polysacc_synt_C: Poly 98.2 8.5E-06 1.8E-10 68.1 9.4 79 391-472 2-80 (146)
41 KOG2864 Nuclear division RFT1 98.2 0.00044 9.5E-09 65.8 21.2 200 47-248 239-448 (530)
42 PF01943 Polysacc_synt: Polysa 98.2 0.00061 1.3E-08 63.3 22.8 187 271-471 3-190 (273)
43 PF07260 ANKH: Progressive ank 98.2 0.00096 2.1E-08 60.8 21.8 155 264-428 8-169 (345)
44 PF13440 Polysacc_synt_3: Poly 97.9 0.0052 1.1E-07 56.3 22.4 163 291-470 8-171 (251)
45 COG4267 Predicted membrane pro 97.7 0.045 9.9E-07 51.2 36.2 337 94-457 71-431 (467)
46 COG4267 Predicted membrane pro 72.4 96 0.0021 30.0 20.3 136 319-471 75-210 (467)
47 PF05975 EcsB: Bacterial ABC t 63.9 1.5E+02 0.0033 29.1 16.1 37 340-376 89-125 (386)
48 PF00558 Vpu: Vpu protein; In 59.1 19 0.00041 26.1 3.9 28 459-486 20-47 (81)
49 PF04505 Dispanin: Interferon- 53.9 84 0.0018 22.9 6.8 40 322-361 34-73 (82)
50 KOG0569 Permease of the major 48.5 3.1E+02 0.0068 27.9 16.2 254 2-268 216-471 (485)
51 PTZ00370 STEVOR; Provisional 39.4 52 0.0011 30.2 4.5 35 446-480 255-292 (296)
52 PF12794 MscS_TM: Mechanosensi 36.9 3.9E+02 0.0085 25.7 22.8 28 342-369 119-146 (340)
53 PRK01637 hypothetical protein; 33.4 4E+02 0.0087 24.8 19.4 7 333-339 117-123 (286)
54 TIGR00822 EII-Sor PTS system, 33.0 4E+02 0.0086 24.6 17.9 37 314-350 106-142 (265)
55 PF02117 7TM_GPCR_Sra: Serpent 32.0 3E+02 0.0064 26.4 8.7 54 384-437 232-285 (328)
56 PRK06814 acylglycerophosphoeth 31.8 8.4E+02 0.018 28.0 41.3 28 182-209 130-157 (1140)
57 TIGR00383 corA magnesium Mg(2+ 30.1 1.7E+02 0.0036 27.8 6.8 57 415-474 253-317 (318)
58 PF12597 DUF3767: Protein of u 27.7 1.6E+02 0.0035 23.2 5.1 14 447-460 69-82 (118)
59 PF05975 EcsB: Bacterial ABC t 25.7 6.4E+02 0.014 24.7 16.6 35 119-153 89-124 (386)
60 PF06963 FPN1: Ferroportin1 (F 25.6 6.9E+02 0.015 25.0 16.5 56 301-366 37-92 (432)
61 PRK09546 zntB zinc transporter 24.6 2.3E+02 0.0049 27.0 6.6 50 422-474 266-323 (324)
62 PRK10739 putative antibiotic t 24.1 4.3E+02 0.0093 23.1 7.5 56 330-389 22-77 (197)
63 COG0598 CorA Mg2+ and Co2+ tra 23.9 4.5E+02 0.0097 25.0 8.4 75 396-474 239-321 (322)
64 PF05684 DUF819: Protein of un 23.1 7.2E+02 0.016 24.4 12.5 64 339-408 72-135 (378)
65 COG3715 ManY Phosphotransferas 21.2 6.5E+02 0.014 23.2 18.0 55 315-369 107-161 (265)
66 PF14184 YrvL: Regulatory prot 21.1 4.5E+02 0.0098 21.3 13.3 101 129-231 6-107 (132)
67 TIGR01478 STEVOR variant surfa 20.9 84 0.0018 28.9 2.5 26 446-471 259-284 (295)
68 PF03904 DUF334: Domain of unk 20.8 4.9E+02 0.011 23.2 7.0 39 119-157 142-180 (230)
69 PF03547 Mem_trans: Membrane t 20.8 5.8E+02 0.013 24.8 8.9 17 353-369 35-51 (385)
70 PF11457 DUF3021: Protein of u 20.6 4.5E+02 0.0097 21.0 16.6 18 467-484 118-135 (136)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=7.2e-56 Score=438.85 Aligned_cols=436 Identities=27% Similarity=0.399 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Q 010900 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (498)
Q Consensus 42 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~ 121 (498)
.++..|+++++++|++++++++.+++++|+.++||+|++++|+.+++.++..++ .....|++.+..+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 566889999999999999999999999999999999999999999999999987 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 010900 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (498)
++++..+++++++++++++..++ +++.++++.+++.++++.+.+.+|+++..++.++..+...+.+.+|+.||+|.++.
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777766 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hC-cccchhHHHHHHHHHHHHHHHHHHHhcCCc--cccccCCCHHhHHHHHHHHHHHhHH
Q 010900 201 ISMAALIFHVFLNWILVAK-LN-YGIVGAAIAGDISLWLMVVGLVVYVTSGCF--PDAWTGFSLRAFKSLASFVKLSLAS 276 (498)
Q Consensus 201 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 276 (498)
.++++.++|++++++|+++ ++ +|+.|+++||++++.+.+++..+++.+++. .....+..+.+++.+|++++.|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999998742 3332333344567999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 010900 277 AVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSA 356 (498)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 356 (498)
++++..+...+...+.+++++| ++++|+|+++.++.++.++++.|++++.+|.+++++|+||++++++..+.+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 77999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHH
Q 010900 357 AFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAG 436 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 436 (498)
.++...+++++++++++..+|++|+++.+.+..++++.++..++++++.+..+.+++.||++.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 010900 437 ALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEALEA 481 (498)
Q Consensus 437 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (498)
+++.... +|..|+|+++..++.++.++..+++++++|+++..+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9996655 9999999999999999999999999999998775443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.8e-52 Score=418.67 Aligned_cols=436 Identities=16% Similarity=0.183 Sum_probs=400.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 010900 39 RERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAG 118 (498)
Q Consensus 39 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~ 118 (498)
+..+-+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++
T Consensus 21 ~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~ 99 (478)
T PRK10189 21 KSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKR 99 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 344555789999999999999999999999999999999999999999999998876 8899999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCh
Q 010900 119 RFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLS--QDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRV 195 (498)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (498)
|+|++++..++++.++++++++.+++ +++.++++.++. .|+++.+.+..|+++.+++.++..+...+++.+|+.||+
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~ 179 (478)
T PRK10189 100 DRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNT 179 (478)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999999999999888776 778899999984 689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh----CcccchhHHHHHHHHHHHHHHHHHHHhcC-C--ccccccC-CCHHhHHHHH
Q 010900 196 WVMTMISMAALIFHVFLNWILVAKL----NYGIVGAAIAGDISLWLMVVGLVVYVTSG-C--FPDAWTG-FSLRAFKSLA 267 (498)
Q Consensus 196 ~~~~~~~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~~~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~ 267 (498)
+.++..+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +++.+++.+|
T Consensus 180 ~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (478)
T PRK10189 180 KIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIW 259 (478)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHH
Confidence 9999999999999999999999753 78999999999999999988877766543 1 2222222 1122457899
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 010900 268 SFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFS 347 (498)
Q Consensus 268 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~ 347 (498)
++++.|+|.+++.........+.+.+++++| ++++|+|+++.++.++..++..|++++.+|.+++++|+||.+++++.
T Consensus 260 ~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~ 337 (478)
T PRK10189 260 EVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQ 337 (478)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999888888888889998 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 010900 348 IAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIAC 427 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 427 (498)
.+.+.+++++++..++++++++++++..+|++|+++.+.+..++++.++..++++++.+..+.+++.||++.++++++.+
T Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~ 417 (478)
T PRK10189 338 LRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLG 417 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010900 428 YYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKE 477 (498)
Q Consensus 428 ~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 477 (498)
.|++.+|+.+++....++|..|+|++..+++.+..++..+++++++|+++
T Consensus 418 ~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 418 MWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 99999999999977778999999999999999999999999999999873
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=7.7e-51 Score=407.00 Aligned_cols=432 Identities=22% Similarity=0.292 Sum_probs=392.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCc
Q 010900 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~ 120 (498)
++++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++.++. ..+..|++++..+.++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4567899999999999999999999999999999999999999999999998877 778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 010900 121 DMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (498)
|++++.++.++.+.++++++..++..+.++++.+++.|+|..+.+.+|+++..++.++..+....++++|+.||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988777655779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----CcccchhHHHHHHHHHHHHHHHHHHHhcCC--ccccc-cCCCHHhHHHHHHHHHHH
Q 010900 201 ISMAALIFHVFLNWILVAKL----NYGIVGAAIAGDISLWLMVVGLVVYVTSGC--FPDAW-TGFSLRAFKSLASFVKLS 273 (498)
Q Consensus 201 ~~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~ 273 (498)
.++++.++|++++++|+++. ++|+.|+++|+.+++.+..+...+++++++ .+.+. +++.+.+++..|++++.|
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999752 489999999999999888877766666542 11221 112223456889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 010900 274 LASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVI 353 (498)
Q Consensus 274 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~ 353 (498)
+|.++++.++.....+++.+++++| +++++++++++++..+...+..+++++..+.+++++|+||.+++++..+.+..
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~ 320 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIG 320 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccC--cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 010900 354 TSAAFGILFTLLVLAFENQFPKLFTD--KP---ILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACY 428 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 428 (498)
++.+++++.+++++++++++.++|++ |+ ++.+.+..++++.+++.++.+++.+..+++++.||++.++++++++.
T Consensus 321 ~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~ 400 (464)
T PRK00187 321 FGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACY 400 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHH
Confidence 99999999999999999999999964 43 67888999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 010900 429 YVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQ 475 (498)
Q Consensus 429 ~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 475 (498)
|++++|+.+++...+++|+.|+|+++.+++++..+....++++++|+
T Consensus 401 ~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~ 447 (464)
T PRK00187 401 WLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTAR 447 (464)
T ss_pred HHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877789999999999999999988876666544333
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2.2e-48 Score=385.69 Aligned_cols=423 Identities=17% Similarity=0.171 Sum_probs=372.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Q 010900 43 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHL-GEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (498)
Q Consensus 43 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~ 121 (498)
.+..|++++.++|.++++++..+.+.+|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45678999999999999999999999999999998 778999999999999877 7888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 010900 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (498)
++++..++++.++++++++..++ ..+.++++.+++.++++.+.+..|+++..++.++..+...+.+.+|+.||+|.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888766 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCC-cc-ccccCCCHHhHHHHHHHHHHHhHHHH
Q 010900 201 ISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGC-FP-DAWTGFSLRAFKSLASFVKLSLASAV 278 (498)
Q Consensus 201 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~ 278 (498)
.++++.++|+++++++++.+++|+.|+++|+.+++.+..++..+++.+++ .+ .+.+.++...++..|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999988877776531 11 11111221112468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 010900 279 MLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAF 358 (498)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (498)
+...+...+.+.+.+++++| ++++|+|+++.++.++.+++..|++++.+|.+++++|+||.+++|+..+.+.++....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 6699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---hhHHHHHHHHHHHHhhhHH
Q 010900 359 GILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGW---QFLVALISIACYYVFGLPA 435 (498)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l 435 (498)
+...+++++++++++..+|++|+|+.+.+..++++.++..+......+...++++.+| ++.++.++.++.|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999998764433355555555555554 99999999998764222
Q ss_pred HhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010900 436 GALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQK 476 (498)
Q Consensus 436 ~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 476 (498)
. .+.+|..|+|++..+++.++.++...++++ +|++
T Consensus 400 ---~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 400 ---T--LPWLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred ---H--HHHcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 1 124799999999999999999997766554 4754
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.2e-48 Score=389.64 Aligned_cols=433 Identities=23% Similarity=0.404 Sum_probs=395.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCc
Q 010900 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~ 120 (498)
..++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++.... ..+..|++.+..+.++|++|++|+
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3466799999999999999999999999999999999999999999999987765 678889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 010900 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (498)
|++++.+++++.+++.++++.+++ +.+.++++.+++.+++..+.+..|+++.+++.++..+...+++++++.|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 999999999999999999887766 7778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hCcccchhHHHHHHHHHHHHHHHHHHHhcCCc-c-c-cccCCCHHhHHHHHHHHHH
Q 010900 200 MISMAALIFHVFLNWILVAK----LNYGIVGAAIAGDISLWLMVVGLVVYVTSGCF-P-D-AWTGFSLRAFKSLASFVKL 272 (498)
Q Consensus 200 ~~~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~ 272 (498)
+.++++.++|+++++++++. +++|+.|+++++.+++.+..++..+++++++. + . .+.++...+++..|++++.
T Consensus 165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 244 (456)
T PRK01766 165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL 244 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence 99999999999999999863 35799999999999999999998888776421 1 1 1122222345678999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 010900 273 SLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSV 352 (498)
Q Consensus 273 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~ 352 (498)
++|.+++...+...+.++..+++++| ++++++++++.++.++...+..+++.+..+.+++++|+||.+++++..+.+.
T Consensus 245 ~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~ 322 (456)
T PRK01766 245 GLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGL 322 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhh
Q 010900 353 ITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFG 432 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 432 (498)
+++..++.+.++++..+++++.++|++|+++.+.+..++++..++.++.+++....+++++.||++.+++.++++.|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~ 402 (456)
T PRK01766 323 AVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLG 402 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010900 433 LPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQK 476 (498)
Q Consensus 433 i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 476 (498)
+|+.+++...+.+|..|+|+++.+++++..++..+++++.+|+.
T Consensus 403 i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 403 LPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987777899999999999999999999888877765554
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.4e-48 Score=390.18 Aligned_cols=427 Identities=19% Similarity=0.212 Sum_probs=387.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Q 010900 43 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHL-GEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (498)
Q Consensus 43 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~ 121 (498)
++..|++++.++|.+++++...+++++|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45779999999999999999999999999999995 999999999999998876 7788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 010900 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (498)
++++.+++++.++++++++..++ +.+.++++.+++.+++..+.+..|+++.+++.++..+.....+.+|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999888776 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccccc-CCCHHhHHHHHHHHHHHhHHHHH
Q 010900 201 ISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWT-GFSLRAFKSLASFVKLSLASAVM 279 (498)
Q Consensus 201 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~ 279 (498)
.++++.++|+++++++++.+++|+.|+++|+++++.+..++..+++++++.+.+++ +..+.+++..|++++.|.|.+++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888899999999999999999999888776653222221 11122456789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 010900 280 LCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFG 359 (498)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 359 (498)
.....+...+.+.+++++|+ ++++|+++++.++..+...+..+++.+..|.+++++|+||.|++++..+.+.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888884 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhH
Q 010900 360 ILFTLLVLAFENQFPKLFTD-KPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGAL 438 (498)
Q Consensus 360 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 438 (498)
++.++++..+++++..+|++ |+|+.+.+.+++++.+++.++++++.+..+.+++.||++.++..+.... ++++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHH
Confidence 99999999999999999995 7889999999999999999999999999999999999999999997764 789999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcchH
Q 010900 439 LGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQ 475 (498)
Q Consensus 439 l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 475 (498)
+.. .+|+.|+|+++.+++.+..++..+++++ +|+
T Consensus 405 l~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 405 LPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 843 3799999999999999988886665543 444
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.1e-36 Score=310.70 Aligned_cols=413 Identities=16% Similarity=0.102 Sum_probs=348.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHhcCCCcchHHH
Q 010900 49 IWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEF-AAVSVVQNVIEGFVYGIM-LGMGSALETLSGQAVGAGRFDMLGI 125 (498)
Q Consensus 49 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~~~~~g~~~~~~~~~ 125 (498)
+.|.+....++++++.+.+++|..+++| +|++++ |+++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788999999999999999999999999 899999 899999999876623333 468888777776654332 56776
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHH
Q 010900 126 YLQRSFIVTGATAL-CLMPF-YIFATPFLKLL--SQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMI 201 (498)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (498)
.+.++......++. +..++ +++++++..++ +.+++..+.+..|++++.++.++..+....++++|+.+|++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776666554444 33444 67778888877 4466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccchhH--HHHHHHHHHHHHHHHHHHhcCCccccccCCCHHhHHHHHHHHHHHhHHHHH
Q 010900 202 SMAALIFHVFLNWILVAKLNYGIVGAA--IAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVM 279 (498)
Q Consensus 202 ~~~~~~~~i~l~~~li~~~~~g~~g~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 279 (498)
+++.+++++...+++. .++|..|++ +++++++.+..++..++.+|++.+.+. +++ .+++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 9999887776443333 478999988 999999999998887777664322211 111 1345789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 010900 280 LCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLM-ISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAF 358 (498)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 358 (498)
+...++...+++.+.+.++ ++++++|+.+.++.+++.. +..+++++..|.+++++|+||.++.++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877776 5688999999999988764 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhH
Q 010900 359 GILFTLLVLAFENQFPKLFTD----KPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLP 434 (498)
Q Consensus 359 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 434 (498)
+.|+++++.++++++.+++.+ |++.++.+..++++++++.++.+++.+..+.+++.||+|.+++.+.... +++++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHH
Confidence 999999999999999999976 5577889999999999999999999999999999999999999999987 78999
Q ss_pred HHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010900 435 AGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQT 472 (498)
Q Consensus 435 l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (498)
+++++ .+.+|..|+|+++.+++.+..++..++.+|+
T Consensus 393 l~~~l--~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 393 LSLLL--IFPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988 4568999999999999999998877777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=3.5e-36 Score=306.07 Aligned_cols=413 Identities=15% Similarity=0.145 Sum_probs=347.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHHH
Q 010900 50 WEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQ 128 (498)
Q Consensus 50 ~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (498)
.|.+.|.++++++..+.+++|+.+++| +|++++|+++.+.++..+.......|++++..+.++++.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 7999999999999998877455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 010900 129 RSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALI 207 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (498)
+++.+.++.+++.+++ +.+.+++...+..+++. ..++++.++..++..+.....+.+|+.+|+|..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888766 66677766666665543 346778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----hCcccchhHHHHHHHHHHHHHHHHHHHhcCCc-c--ccccCCCHHhHHHHHHHHHHHhHHHHH
Q 010900 208 FHVFLNWILVAK-----LNYGIVGAAIAGDISLWLMVVGLVVYVTSGCF-P--DAWTGFSLRAFKSLASFVKLSLASAVM 279 (498)
Q Consensus 208 ~~i~l~~~li~~-----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 279 (498)
+++.++..++.. .+.++.|+++++.+++.+..++..++.++++. + ..+.+....+++..|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776665542 23567788899999999999887766654321 1 111111223456889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 010900 280 LCLELWYYTAVILMVGWLNN-----PE---IAVDAI-SICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAV 350 (498)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~-----~~---~~va~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ 350 (498)
+....+....|+.++++... .. ..++.| +++.++..++..+..+++++..|.+++++|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888765321 01 233333 4566788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 010900 351 SVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYV 430 (498)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 430 (498)
+.++...++.|+++++.++++++..++.+++ .+.++++++++..++.+++.+..+++++.||+|.+++.++.+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 9999999999999999999999999988543 3678899999999999999999999999999999999999988 8
Q ss_pred hhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 431 FGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 431 ~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
+++++++++...+.+|..|+|+++.+++++..++..+..+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988843477999999999999999999998877765
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=7.6e-36 Score=289.33 Aligned_cols=337 Identities=33% Similarity=0.547 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 010900 55 PVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVT 134 (498)
Q Consensus 55 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 134 (498)
|.+++++...+...+|+.+++++|++++|+++++.++..+. ..+..|++++..+.++++.|++|+|+.++..+....+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999988866 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q 010900 135 GATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLN 213 (498)
Q Consensus 135 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 213 (498)
++++++.+++ +.+.+++..+++.+++..+.+..+++++++..++..+.....+.+++.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888876 788899999888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhC-cccchhHHHHHHHHHHHHHHHHHHHhcC-CccccccCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010900 214 WILVA-KLN-YGIVGAAIAGDISLWLMVVGLVVYVTSG-CFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAV 290 (498)
Q Consensus 214 ~~li~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 290 (498)
+++++ .++ +|+.|+++++.+++++..++..++.+++ +.+.+|++..+.+++..|+++++++|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 567 7899999999999999999888777753 33333222222345688999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010900 291 ILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFE 370 (498)
Q Consensus 291 ~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (498)
+.+++.+| ++++++|+++.++.++...+..+++++..|.++++++++|.++.++..+++.++.++++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcHHHHHHHHHHHHHH
Q 010900 371 NQFPKLFTDKPILIRETSKLAYFL 394 (498)
Q Consensus 371 ~~i~~l~~~~~~~~~~~~~~l~~~ 394 (498)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.2e-34 Score=287.81 Aligned_cols=404 Identities=10% Similarity=-0.006 Sum_probs=341.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHH
Q 010900 49 IWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYL 127 (498)
Q Consensus 49 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~ 127 (498)
+.|.+.+...++++..+.+++...+++| +|++++|.++...++..++......|++++..+.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788899999999999999999999998 79999999999999998775655888888888999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010900 128 QRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAAL 206 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 206 (498)
++++.+.+..+++.+++ +.+.+++...+..+++. ..+..+..+..++..+.....+.+|+.||++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888776 88888988877766653 23455666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCCc-cccccCCCHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 010900 207 IFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCF-PDAWTGFSLRAFKSLASFVKLSLASAVMLCLELW 285 (498)
Q Consensus 207 ~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 285 (498)
++|+.+ +++.... .|+.|+++|+++++.+..+...++++|++. +.++.+++ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 499999999999999998877777765421 11111122 2355789999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 010900 286 YYTAVILMVG-WLNNPEIAVDAISICMNLQQ-WTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFT 363 (498)
Q Consensus 286 ~~~~~~~~~~-~~~~~~~~va~~~~~~~i~~-~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (498)
....++.+++ .+| ++++|+|+++.|+.+ +...+..+++++..|.+++. +|.++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998885 777 779999999999977 55899999999999999985 6778899999999999999999999
Q ss_pred HHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhhc
Q 010900 364 LLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGF 443 (498)
Q Consensus 364 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 443 (498)
+++.+++++++.++.+|+ ++.+.+++++++++.++...+......+.+.++++......+... ++++++++++ .+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~l--i~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWL--IP 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HH
Confidence 999999999999999876 777899999999999999888888888888888887776666655 8899999998 66
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 444 KLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 444 ~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
.+|..|++++..+++.+..++..+...+
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999886665543
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=296.01 Aligned_cols=449 Identities=41% Similarity=0.668 Sum_probs=426.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcch
Q 010900 43 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDM 122 (498)
Q Consensus 43 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~ 122 (498)
..+.|++++++.|.++..+.+.+.+.+++.++||+|+.++++.+++.++.+.....+..|+..+..+.++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999987788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010900 123 LGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMIS 202 (498)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (498)
.....+++..+....+++...++.+.++++..++.++++...+..|.++..+..+..........++|++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccccCCCHHhHHHHHHHHHHHhHHHHHHHH
Q 010900 203 MAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCL 282 (498)
Q Consensus 203 ~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 282 (498)
.+..++++++++++++..++|..|++++..+++.+.......|......+..|..++.. ++.++++++.++|.+++..+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999999888775545566666666 88999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 010900 283 ELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILF 362 (498)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (498)
+.+.+.+.....+.++++..++++.++..++....++++.+++.+...++++.+|+++++++|.....+....+..+...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhh
Q 010900 363 TLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYG 442 (498)
Q Consensus 363 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 442 (498)
+..+....+.+..+|++|+++.+...+..++++++.++++.+.+..+..++.|+.++..++++.+.++..+|+.+.+...
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~ 422 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFF 422 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhhhcCCCC
Q 010900 443 FKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEALEAEDRLKTMEGPP 492 (498)
Q Consensus 443 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (498)
.++|..|.|.++..+.............+.+|+++..+.+++....+.++
T Consensus 423 ~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 423 TKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred EecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 88999999999999988888888888888999999999988877755543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.1e-29 Score=252.37 Aligned_cols=386 Identities=15% Similarity=0.136 Sum_probs=335.9
Q ss_pred cCh-HHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 010900 77 LGE-VEFAAVSVVQNVIEGFVYGIM-LGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLK 153 (498)
Q Consensus 77 lg~-~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 153 (498)
+|. ++..+|.++.++..++..... .++.++..|...+.. ++++|+.++..+....+..+++++++++ .+++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 467799999999998744444 468999999999998 8888999999988888888778777766 888999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCcc---cchhH
Q 010900 154 LL--SQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYG---IVGAA 228 (498)
Q Consensus 154 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~~ 228 (498)
.+ +.+++..+.+..+++++++..++.++..++.+++++++|...+....++.++..++..+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 88 456788899999999999999999999999999999999999999999888776664444333 356 88899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 010900 229 IAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAIS 308 (498)
Q Consensus 229 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~ 308 (498)
+|.+++.++..++.....+|...+.+... +. ..+..|++++...|..++....++...+++.+.+.+++ .++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~--G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKF-DW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE--GSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccC-CC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--cHHHHHH
Confidence 99999999999998888887644432221 11 12368999999999999999999999999999999884 4888999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC----cHHH
Q 010900 309 ICMNLQQWTL-MISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTD----KPIL 383 (498)
Q Consensus 309 ~~~~i~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~ 383 (498)
.++++.+++. .+..+++++..|.++++..++|.++.++..+++++..+.+.+|++++++.+++++++++.. |++.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999877 6688999999999999999999999999999999999999999999999999999999862 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 010900 384 IRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTT 463 (498)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~ 463 (498)
.+....++.+++++.++.++...+...+++.||+|.++..++.+. ++++.+++++ .+.+|..|++++..++..+..+
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~ 394 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILL--VPFFGVAGLALATSLSAIISAL 394 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999998 8999999888 6679999999999999999999
Q ss_pred HHHHHHHhc
Q 010900 464 VLVIRMLQT 472 (498)
Q Consensus 464 ~~~~~~~~~ 472 (498)
+....++|+
T Consensus 395 ~l~~~l~r~ 403 (451)
T PF03023_consen 395 LLYILLRRR 403 (451)
T ss_pred HHHHHHHHH
Confidence 988877765
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=3.3e-28 Score=237.00 Aligned_cols=419 Identities=14% Similarity=0.064 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh-HHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHhcCCCcch
Q 010900 46 SKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGE-VEFAAVSVVQNVIEGFVYGIML-GMGSALETLSGQAVGAGRFDM 122 (498)
Q Consensus 46 ~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~-~~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~~~~~~g~~~~~~ 122 (498)
.++++|.++-.....+++.+.+++...+++. +|+ ....++.++..+.+++--.+.. .++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 3566777777778888888899998888887 788 5778999999999987444443 478999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHH
Q 010900 123 LGIYLQRSFIVTGATALCLMPF-YIFATPFLKLL-SQ--DKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVM 198 (498)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (498)
.++..+........+.+.++++ .++.+++.... +. +++....+....+++.+..++.++.....+.+++.+|...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 7777666665666666666666 66777777344 33 23434468888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccccC-CCHHhHHHHHHHHHHHhHHH
Q 010900 199 TMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTG-FSLRAFKSLASFVKLSLASA 277 (498)
Q Consensus 199 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 277 (498)
.+..+.-++.-+.....+.........+.+|+..++.+++.++.+..++|.....+++. ++. +.+|++.+.-.|..
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~---~~lk~~~~~~~p~~ 242 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKD---PGLKRFLKLMLPAL 242 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCc---hhHHHHHHHHHHHH
Confidence 99999988887755555544332246789999999999999999999998743332221 221 37899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 010900 278 VMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTL-MISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSA 356 (498)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 356 (498)
++....++...+++.+.+.+.+| +++.++.++++.+++. .+..+++++..|.+|++..++|.++.++..+.++++++
T Consensus 243 l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999844 7889999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhh
Q 010900 357 AFGILFTLLVLAFENQFPKLFTD----KPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFG 432 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 432 (498)
++++|.++++.++++++++++.. +++......+.+..++++.++..+..+....+++.+|+|.|+.+++++. ++|
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n 399 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVN 399 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHH
Confidence 99999999999999999999853 4555778899999999999999999999999999999999999999998 999
Q ss_pred hHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010900 433 LPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQT 472 (498)
Q Consensus 433 i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (498)
+.+++.+ .+.+|..|.+.+..++..+...+.++..+|+
T Consensus 400 ~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 400 ILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999777 6678999999999999988888877766654
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=7.2e-28 Score=244.84 Aligned_cols=398 Identities=11% Similarity=0.110 Sum_probs=321.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchHH
Q 010900 46 SKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLG 124 (498)
Q Consensus 46 ~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~ 124 (498)
.++..+.+.+..++++...+.+++...+++| +||+++|.++.+.++..+.......|++++... . +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---ccCC--H
Confidence 4678888999999999999999999999999 799999999999999998866777788876532 1 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010900 125 IYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISM 203 (498)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 203 (498)
+...+...+.+..+++..++ +.+.+++...+ ++++. ...+++.++..++..+.....+.+++.+|.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 34556666667777666655 44455544444 44443 34567777788888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccccCCCHHhHHHHHHHHHHHhHHHHHHHHH
Q 010900 204 AALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLE 283 (498)
Q Consensus 204 ~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 283 (498)
+..++..++...+.. .++|+.+.+++..++..+..++..+..++ ++++++ +++ ++..|++++++.|...++...
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~~---~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HFS---LASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-eec---HHHHHHHHhhhHHHHHHHHHH
Confidence 888888777766665 47899999999999998877655443333 222211 122 346899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 010900 284 LWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTL-MISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILF 362 (498)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (498)
.+....|+.+++.+.+ ++++|.|+.+.++.+.+. .+...+++...|.+++. ++|.++.++.+++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888764 788999999999988765 45566788999999885 5788899999999999999999999
Q ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhh
Q 010900 363 TLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYG 442 (498)
Q Consensus 363 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 442 (498)
++++.+++++++.++.+++ +..+...++++++..++..+..+...++++.||+|..+..+++.. ++.+|..+++ .
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~--~ 375 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIG--G 375 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHH--H
Confidence 9999999999999988766 788999999999999999999999999999999999998888877 7788877776 4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 443 FKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 443 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
+.+|..|+++++.+++.+..++..+..+|
T Consensus 376 ~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988887776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=5.6e-26 Score=230.45 Aligned_cols=404 Identities=15% Similarity=0.143 Sum_probs=315.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchH
Q 010900 45 ESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDML 123 (498)
Q Consensus 45 ~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~ 123 (498)
..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|++.+..+.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45788899999999999999999999999998 89999999999999999887777799999999999988765554444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHH
Q 010900 124 GIY-LQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMIS 202 (498)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 202 (498)
... ....+......+.+......+..+. ++ .....+++..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 3334333333333333322222221 22 223446678888899999999999999999999998884
Q ss_pred HHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccccCCCHHhHHHHHHHHHHHhHHHHHHHH
Q 010900 203 MAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCL 282 (498)
Q Consensus 203 ~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 282 (498)
+.+ ..-....+.+.. ....+..++...+......+...+..+++.+..+...+. .++..|+.+++++|..+++..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHHH
Confidence 444 122222222221 244556666666666666665555542221111122221 356889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 010900 283 ELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILF 362 (498)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (498)
..+....|+.+++++.+ ++++|.|+.+.++......+..+++.+..|.+++.+.++|.++.++..+++.++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhh
Q 010900 363 TLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYG 442 (498)
Q Consensus 363 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 442 (498)
.+++.++++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++.+.++. +.++.+++++ +
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l--i 382 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL--I 382 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH--H
Confidence 9999999999999998776 666999999999999999999999999999999999999999998 8999999999 6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010900 443 FKLGINGIWSGLLLGCLFQTTVLVIRML 470 (498)
Q Consensus 443 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 470 (498)
+.+|..|++.+. .+.........+..+
T Consensus 383 ~~~g~~g~~~a~-~~~~~~~~~~~~~~~ 409 (480)
T COG2244 383 PRFGLIGAAIAT-ASVIALALLLFYILR 409 (480)
T ss_pred HhhhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 678999999999 443333333333333
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=5.2e-21 Score=191.88 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=191.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 010900 40 ERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR 119 (498)
Q Consensus 40 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~ 119 (498)
+.+++..|++++.++|.++++++......+++.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 35677899999999999999999999999999999999999999999999999976 88999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Q 010900 120 FDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQ--DK---EISELAGKYSKWIVPQLFAYAINSPIQKFLQSQS 193 (498)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 193 (498)
+|++++..+.++.++++.+++.+++ +.+.+++.+++.+ ++ ++.+.+..|+++.+++.++.+++..+.+.+||.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999888776 7889999998853 33 6889999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHH-HHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhc
Q 010900 194 RVWVMTMISMAAL-IFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (498)
Q Consensus 194 ~~~~~~~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 248 (498)
|++.++..++++. ++++++++++.+.+++|+.|+++++.+++.+..++....+++
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996 899999999998778999999999999999998877666643
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=7.9e-21 Score=188.85 Aligned_cols=210 Identities=22% Similarity=0.244 Sum_probs=198.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Q 010900 38 FRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGA 117 (498)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~ 117 (498)
..+.+++..|++++.++|.+++++.......+.+.+++++|++.+|+++++.++.++. .++..|++++.++.+++++|+
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 3467788999999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChh
Q 010900 118 GRFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVW 196 (498)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (498)
||+|++++..+.+..++++++++..++ +.+.+++..+|..++++.+.+..++++..+..++.+.+....+.+||.||+|
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 999999999999999999999888776 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcC
Q 010900 197 VMTMISMAA-LIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (498)
Q Consensus 197 ~~~~~~~~~-~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 249 (498)
.+++.++++ ..+.+++.+++.... +|..|+|++...++.+..++..++++++
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 567888888888754 8999999999999999999999998874
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=3.7e-20 Score=185.78 Aligned_cols=212 Identities=16% Similarity=0.100 Sum_probs=195.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCc
Q 010900 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~ 120 (498)
.+.+.+|++++.++|..++.+...+...+.+.+++++|++++++++++.++.++. ..+..|++++.++.++|++|++|+
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4567899999999999999999999999999999999999999999999999977 889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 010900 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (498)
|++++..+.+..++++.++++.++ +.+.+++..+|..|+++.+.+..++++.++..++.+++....+.+||.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 999999999999999999888776 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCCccc
Q 010900 200 MISMAA-LIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPD 253 (498)
Q Consensus 200 ~~~~~~-~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 253 (498)
..++++ .++.+++.+++....++|+.|++++..+++.+..++..+++++.++++
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 999988 478888888887767899999999999999999999888887754444
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=4.4e-20 Score=183.48 Aligned_cols=206 Identities=11% Similarity=0.151 Sum_probs=192.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 010900 264 KSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKA 343 (498)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~ 343 (498)
+..|++++.++|..++++.......+|+.+++++++ ++++++.+++.++..+...+..+++.+..+.++|++|+||.++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 467899999999999999999999999999999863 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 010900 344 AKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALI 423 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 423 (498)
+++..+.++.+.++++++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+.......+++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 424 SIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 424 ~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
++++. ++|+++++++....++|+.|+++|+.+++.+..++..+++++
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 899999999876667899999999999999988876666554
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=2e-19 Score=180.97 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 010900 263 FKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPK 342 (498)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~ 342 (498)
++..|+++++++|..+++....+...+|+.+++++| ++++++++++.++..+...+..+++.+..|.+++++|++|.+
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 457899999999999999999999999999999998 668899999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 010900 343 AAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVAL 422 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 422 (498)
+.++..+.++++.++++++.+++++++++++..+++.|+++.+.+.+++++.+++.++..+.....+.+++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHhHHHhh----cccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010900 423 ISIACYYVFGLPAGALLGYG----FKLGINGIWSGLLLGCLFQTTVLVIRMLQT 472 (498)
Q Consensus 423 ~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 472 (498)
.+.+.. ++++++.+++... +.+|+.|+++++.+++.+..++..++.+|+
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999987 8899999887532 468999999999999999999877766554
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.86 E-value=1.1e-19 Score=182.10 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=192.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 010900 264 KSLASFVKLSLASAVMLCLELWYYTAVILMVGWL-NNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPK 342 (498)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~ 342 (498)
+..|++++.++|..++++...+...+|+.+++++ | ++++++++++.++..+...+..+++.+..+.+++++|+||+|
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4678999999999999999999999999999996 6 778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 010900 343 AAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVAL 422 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 422 (498)
+.++..+.+.++.++++++.++++.++++++..+++.|+++.+.+.+++++++++.++..+......++++.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 423 ISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 423 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
.++.+. ++|+++++++...+++|+.|+++++.+++.+..++..+++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999987 899999999976678999999999999999998886666554
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=5e-17 Score=166.07 Aligned_cols=205 Identities=14% Similarity=0.140 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Q 010900 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (498)
Q Consensus 42 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~ 121 (498)
+++..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++..+....+..+++++..|.++++.|++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45578999999999999999999999999988556899999999999999887634567899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChh
Q 010900 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQ----DKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVW 196 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (498)
+.++.++........++.+.++. ..++++++.++.+ +++....+..+++++++..++..+.....+.+++.||+|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999888876 8899999988865 457788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhc
Q 010900 197 VMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (498)
Q Consensus 197 ~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 248 (498)
.++..++...+++++++++++. .+|..|+++++.+++.+..++..++.+|
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988875 3699999999999999999988888776
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=4.3e-16 Score=145.83 Aligned_cols=271 Identities=14% Similarity=0.170 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHH
Q 010900 49 IWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYL 127 (498)
Q Consensus 49 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~ 127 (498)
++|.+.....+++...+.+++...+++| +|++++|.++...++.+++......|++++..+..++...+ +++.+...
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3678889999999999999999999998 89999999999999999886667899999999988887543 34444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 010900 128 QRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALI 207 (498)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (498)
.......++.+++...+.... ..+..+ +... .+........++........+++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~----~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIA----SFFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444333333332221 133333 2221 11212222225677888899999999999999999999988
Q ss_pred HHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccccCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010900 208 FHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYY 287 (498)
Q Consensus 208 ~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 287 (498)
...+...+++.. +.+..+..++..++..+..++..++.+|+. +.++. ..+++..|++++++.|..++++...+..
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRFS---FFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccc---ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777666654 445889999999999999888888887642 22222 2224688999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 288 TAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNE 335 (498)
Q Consensus 288 ~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~ 335 (498)
..|..+++.+.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998874 88899999999999999999999999999999975
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.76 E-value=3.1e-16 Score=152.02 Aligned_cols=194 Identities=18% Similarity=0.191 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 010900 275 ASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVIT 354 (498)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 354 (498)
|.++++....+...+++.+++++| ++++++|+++.++..+...+..+++++..|.+++++|++|.++.++..+...++
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 677888999999999999999998 668899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhH
Q 010900 355 SAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLP 434 (498)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 434 (498)
..+++++.++++.++++++..+++.|++..+.+..++++++++.++.+++.....++++.||.+.+...++.+. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999877888889999999999999999999999999999999999999999987 78888
Q ss_pred HHhHHHh-hcc-cchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 435 AGALLGY-GFK-LGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 435 l~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
+++.+.. ..+ +|..|++++..++.++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887754 445 679999999999999988887666654
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=8e-16 Score=156.66 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh------H---HHHHH-HHHHHHHHHHHHHHHHHHHhhHHH
Q 010900 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGE------V---EFAAV-SVVQNVIEGFVYGIMLGMGSALET 109 (498)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~------~---~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~ 109 (498)
.+++..|++++.++|..++++...+...+|+.++++ +++ + .+|.+ +.+.++..+. ..+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 456788999999999999999999999999999987 432 1 23333 3455666666 6678899999999
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 010900 110 LSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKF 188 (498)
Q Consensus 110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (498)
.++++.|++|+|+.++.+++...+...++.+.++. ..++++++.++..++ .+..+++++++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776 778889988886543 2567899999999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhc
Q 010900 189 LQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (498)
Q Consensus 189 l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 248 (498)
+++.||+|.++..+++..++|++++++++..+.+|..|+++++++++.+..++..++.+|
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988874446899999999999999999998888865
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=5.1e-18 Score=145.59 Aligned_cols=162 Identities=25% Similarity=0.405 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 010900 275 ASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVIT 354 (498)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 354 (498)
|.+++++...+...+++.+++++| ++++++++++.++.++...+..+++++..+.+++++|++|++++++..+.+..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999997 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhH
Q 010900 355 SAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLP 434 (498)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 434 (498)
...+++++++...++++++..+|+.|+++.+.+.+++++..++.++..+.....+++++.||++.+++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhH
Q 010900 435 AGAL 438 (498)
Q Consensus 435 l~~~ 438 (498)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 27
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.72 E-value=9.7e-15 Score=145.51 Aligned_cols=206 Identities=17% Similarity=0.207 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Q 010900 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (498)
Q Consensus 42 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~ 121 (498)
+.+..|++++...|..++.....+...+|+.+.+++++.++++++.+.++.++....+..++++...|.+++...++|.+
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~ 272 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE 272 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34468999999999999999999999999999999999999999999999998867888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChh
Q 010900 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLS----QDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVW 196 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (498)
+.++..++++...+.+.++.++. +.+++|+++.+. .+.+....+...+++.+++.++.++...+...+.+.+|+|
T Consensus 273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~ 352 (451)
T PF03023_consen 273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence 99999999999999999999876 889999997774 4567788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcC
Q 010900 197 VMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (498)
Q Consensus 197 ~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 249 (498)
.++..++++.++|++++.++.. .+|..|.++++.++..+..++..++++|+
T Consensus 353 ~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 353 TPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988875 47999999999999999999998888874
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=5.3e-18 Score=145.49 Aligned_cols=160 Identities=22% Similarity=0.379 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHH
Q 010900 55 PVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVT 134 (498)
Q Consensus 55 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 134 (498)
|.++++++..+...+++.+++++|++++++++++.++..+. ..+..|++.+..+.++|++|++|+|++++.++.++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH-HHHHHH
Q 010900 135 GATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAAL-IFHVFL 212 (498)
Q Consensus 135 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 212 (498)
+++++++.++ +.+.+++..+++.+++..+.+..|+++..+..++..+.....+++++.||++.+++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999887 88999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHH
Q 010900 213 NWI 215 (498)
Q Consensus 213 ~~~ 215 (498)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.67 E-value=2.9e-14 Score=141.82 Aligned_cols=202 Identities=8% Similarity=-0.034 Sum_probs=172.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 010900 40 ERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVG-HLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAG 118 (498)
Q Consensus 40 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~-~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~ 118 (498)
+++++..|++++.+.|..++++...+...+|+.+++ ++|++++|.|+.+.++...+...+..+++++..|.+++. +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 456778899999999999999999999999999998 599999999999999977443678899999999999995 5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhH
Q 010900 119 RFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWV 197 (498)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (498)
|+|+.++.++........++.+.++. ++++++++.++.+++ .+.+.++++++++...+...+..+...+.+.++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888777766 789999999987765 344677888888888888777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhc
Q 010900 198 MTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (498)
Q Consensus 198 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 248 (498)
.....+...+++++++++++.. +|..|+++++.+++.+..++..+...+
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999998854 699999999999999999887766654
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.67 E-value=3.8e-13 Score=136.98 Aligned_cols=201 Identities=12% Similarity=0.038 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCc
Q 010900 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (498)
Q Consensus 42 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~ 120 (498)
+++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.+.....+...++....|..++. ++|+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 35568999999999999999999999999999998 79999999999999988764555556777788888875 5677
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 010900 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (498)
++.++.+++.......++++.++. ..++++++.++.+++ +..+...++++++...+..+.......+++.||+|..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 888999999999988888888776 778899887776654 56678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhc
Q 010900 200 MISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (498)
Q Consensus 200 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 248 (498)
..+++..+++++..+++.. .+|+.|+++++.+++.+...+..++..|
T Consensus 358 ~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888877666653 4699999999999999988888877754
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.66 E-value=1e-12 Score=129.13 Aligned_cols=206 Identities=15% Similarity=0.153 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Q 010900 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD 121 (498)
Q Consensus 42 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~ 121 (498)
+.+..|++.+...|..++...+++..++|+.+.+.+.+.+.+.+..+..+.++..-.+..++++...|.+|+...++|.+
T Consensus 227 ~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~ 306 (518)
T COG0728 227 KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP 306 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 33578999999999999999999999999999999999999999999999999877899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChh
Q 010900 122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLS----QDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVW 196 (498)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (498)
+.++..+.++.++++++++.++. ..+++|+++.+. .+++....+...+...+++.++..+..++...+++.+|+|
T Consensus 307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999877 889999997773 3456667778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcC
Q 010900 197 VMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (498)
Q Consensus 197 ~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 249 (498)
.|+++.+++.++|+.+++.+.. .+|..|.++++.++..+.+.++++..+|+
T Consensus 387 tP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 387 TPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred cChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999966664 57888999999999999998888888775
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.64 E-value=1.2e-12 Score=120.95 Aligned_cols=247 Identities=16% Similarity=0.180 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 010900 65 SITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMP 143 (498)
Q Consensus 65 l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (498)
..+++...+++| +|++++|.|+...++..+.......|+.+...+ . .++++++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888998 899999999999999998855567777777544 2 2345556666666665554444433333
Q ss_pred HHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 010900 144 FYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYG 223 (498)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 223 (498)
+. ..+...+ .+++. ..++....+..+...+.....+.+++.+|.+.....+....+.......++.. .+.+
T Consensus 77 ~~---~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 LA---ILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred HH---HHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 21 1111233 33332 23445566677888888999999999999999999999998888555544444 3448
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCccccccCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 010900 224 IVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIA 303 (498)
Q Consensus 224 ~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (498)
..+..++..++..+..++.....++ +.+. .+ +.+..| .++.+.|..+.+.........+..+++.+. ++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRR-KLRL--SF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-ccCC--Cc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 8889999998888887766654432 1111 11 112334 799999999999999999999999999843 3889
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010900 304 VDAISICMNLQQWTL-MISLGFHTAISVRVSN 334 (498)
Q Consensus 304 va~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~ 334 (498)
+|.|+++.++...+. .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.54 E-value=2.4e-12 Score=130.78 Aligned_cols=187 Identities=20% Similarity=0.274 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCc
Q 010900 42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (498)
Q Consensus 42 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~ 120 (498)
.++..|++++.++|..++++...+.+.+|+.++++ +|++++|.|+.+..+.... ..+...++....|.+++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 47789999999999999999999999999999998 7999999999888888876 888899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 010900 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (498)
++.++..++.......++++..+. ..+++|++..+.+++. ..+...++++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998877 8888899887766652 2267788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHH
Q 010900 200 MISMAALIFHVFLNWILVAKLNYGIVGAAIAGDIS 234 (498)
Q Consensus 200 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~ 234 (498)
..+.++.++|++++++++. .+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 9999999999999999985 46888999988 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.29 E-value=1.1e-08 Score=102.95 Aligned_cols=418 Identities=12% Similarity=0.029 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHHH
Q 010900 51 EIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIE-GFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQ 128 (498)
Q Consensus 51 ~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~-~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (498)
+-+.-.++.|++..+.+++.+.++-| ++|+.+|..++=..+.. .+.+..=.++-.+.++.-.+...+++.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45566778888888888887777776 89999998865444443 22245566777776553333211112222222222
Q ss_pred HHHHHHHHHHHHHHHH-H-HhH--HH--HHHHcC-CCHH---HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHhhcCC
Q 010900 129 RSFIVTGATALCLMPF-Y-IFA--TP--FLKLLS-QDKE---ISELAGKYSKWIVPQLFAYAINSPI----QKFLQSQSR 194 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~-~~~--~~--i~~~~~-~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~ 194 (498)
....+..+++.+...+ + +.. .. ...+.. ..++ ..+.....+.+...+.....+...+ +..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 2222222222211111 1 000 00 011111 1111 0111122223333344444333333 344444445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-hCccc------chhHHHHHHHHHHHHHHHHHHHhc-CCcc-----ccccCCCH-
Q 010900 195 VWVMTMISMAALIFHVFLNWILVAK-LNYGI------VGAAIAGDISLWLMVVGLVVYVTS-GCFP-----DAWTGFSL- 260 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~i~l~~~li~~-~~~g~------~g~~~a~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~- 260 (498)
.+.-........+.+..+.+..... .+++. .-+.++..++++...+........ ...+ ....+...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 5555555555555554443333211 01111 112344445555544332221111 1111 11111111
Q ss_pred --HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 010900 261 --RAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGW--LNNPEIAVDAISICMNLQQWTL-MISLGFHTAISVRVSNE 335 (498)
Q Consensus 261 --~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~va~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~ 335 (498)
.....-++.++.......+++.-.+....+..++.. +.+ .++-|.|++++++-++.. ++...+-.+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 001123678888888999999999999999888888 665 677889999999977655 77888899998888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010900 336 LGAGHP---------KAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAV 406 (498)
Q Consensus 336 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 406 (498)
..+++. ++..+.....++....+++.+...-..+++.+..++.++...-..+...+++++...++.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 776543 33555666677777777776666666677777777765543334468999999999999999999
Q ss_pred HHHHHhhcCchhHHHHHH---HHHHHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 407 LLGVAVGAGWQFLVALIS---IACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 407 ~~~~l~~~g~~~~~~~~~---~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
.....++....+.....+ .+.. ++.+..++.+... .+|..|..+|-.+.+..+.+....+.+|
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987766543332 2222 5566777777554 6999999999999999999887776654
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.23 E-value=8.5e-10 Score=109.40 Aligned_cols=205 Identities=17% Similarity=0.239 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 010900 263 FKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQW-TLMISLGFHTAISVRVSNELGAGHP 341 (498)
Q Consensus 263 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~-~~~~~~~~~~~~~p~~~~~~g~~~~ 341 (498)
..+.|++.+++.|..+..........++..+++++|+ ...++.++++...+. -+.+..++..+..|.+++++|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 4678999999999999999999999999999999994 488899888888665 5577889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010900 342 KAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVA 421 (498)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 421 (498)
+......+++.........|.+. ++.+.+++...+..|+++...+..+.++.....+-..........+++.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999998888888887774 55666999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 422 LISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 422 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
++..... ++++++++++....++|..|++++..+++.+...+...+...
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 9999988 999999999999999999999999999999988886666654
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=6.2e-06 Score=77.98 Aligned_cols=414 Identities=12% Similarity=0.008 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHhcCCCcchH
Q 010900 46 SKKIWEIAGPVILASGSEFSITFVTAAFVGH-LGEVEFAAVSVVQNVIEGF-VYGIMLGMGSALETLSGQAVGAGRFDML 123 (498)
Q Consensus 46 ~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~-~~~~~~gl~~~~~~~~~~~~g~~~~~~~ 123 (498)
.....+.+.-.+..|++..+.++..+.++-| ++++.+|..++-..+..-- .+..-.++.-| ....|..+.|.-
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPADTW 81 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCccH
Confidence 3444555566667777777777776655554 8999999998776655511 12233334433 333343332322
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHcCCCHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 010900 124 GIYLQRSFIVTGATALCLMPF--YIFATPFLKLLSQDKE-ISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (498)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (498)
.+ +.+..+++..++.+..+. +++...... .|+. ..+.-..-..+...+.+.-.+...+.-..|...+.+.-.+
T Consensus 82 te-~~n~~wlS~~L~~~i~~~~i~~wl~~~~s---~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i 157 (530)
T KOG2864|consen 82 TE-FINLLWLSVPLQTAINVACIYFWLGFLSS---SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI 157 (530)
T ss_pred HH-HHHhhhhhhhHHHHHHHHHHHHHHHHhhc---cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22 334455555554444332 111111111 1110 0111111122333344444444444445555556666666
Q ss_pred HHHHHHHHHHHHHHHHHH-hh-CcccchhHHHHHHHHHHHHHHHHHHHhcC-Cccccc-----------cCCCHH-hHHH
Q 010900 201 ISMAALIFHVFLNWILVA-KL-NYGIVGAAIAGDISLWLMVVGLVVYVTSG-CFPDAW-----------TGFSLR-AFKS 265 (498)
Q Consensus 201 ~~~~~~~~~i~l~~~li~-~~-~~g~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~-~~~~ 265 (498)
...+..++.-++.+..++ +. .+++...++|.........+...+++.+. +-+... +....+ ..-.
T Consensus 158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence 666666555333333332 22 24445555555544444333223332221 200000 000000 0001
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHH
Q 010900 266 LASFVKLSLASAVMLCLELWYYTAVILMVGWLNN-PEIAVDAISICMNLQQWTL-MISLGFHTAISVRVSNELGAGHPKA 343 (498)
Q Consensus 266 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~va~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~g~~~~~~ 343 (498)
=++..+.-.....+.+.-++....+..+++.... .-.+-|.|.+.++.-++.. .+...+-.......++...+++.|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 1344555555555666666666666555542211 0123458888888855444 6777888888888888888777776
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 010900 344 AKFSI---AVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLV 420 (498)
Q Consensus 344 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 420 (498)
.++.. .+.+++...+++.....-..+++.++.+.+++.-.-..+...+++++...++.+++.+......+.+..+..
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 66654 455555555555555555555667777776544323346789999999999999999999999998877664
Q ss_pred HHHH---HHHHHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 421 ALIS---IACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 421 ~~~~---~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
...+ .+.. ++.+.+++++.. .+|..|..+|-.+.+.++-+....++++
T Consensus 398 ~~~n~~mlafS-viflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 398 DKHNKFMLAFS-VIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HhcccchhHHH-HHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 2333 566778888844 4899999999999998887775555543
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.04 E-value=1.3e-06 Score=79.03 Aligned_cols=260 Identities=12% Similarity=0.033 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Q 010900 43 WNESKKIWEIAGPVILASGSEFSITFVTAAFVGH-L-GE-VEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR 119 (498)
Q Consensus 43 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-l-g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~ 119 (498)
...++++.++-+|..+++....+...+.+.-++| - .+ +.+++|+++.++.-++ ..+...+-+.... +++++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~-----~V~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLV-----FVNSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHH-----Hhcch
Confidence 3468899999999999999999999999999987 3 23 5599999999988877 5555555555333 34333
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HH-hHHHHH-HHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChh
Q 010900 120 FDMLGIYLQRSFIVTGATALCLMPF-YI-FATPFL-KLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVW 196 (498)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (498)
+++ ++..........+.+.+..++ +- ....++ ..++.++++.+.+...+.++.+..++.++...++|++.-.+++.
T Consensus 81 rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 332 222222222222222222222 22 223333 66688999999999999999999999999999999988667776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCccc-chhH---HHHHHHHHHHH---HHHHHHHhcCCccccccCCCHHhHHHHHHH
Q 010900 197 VMTMISMAALIFHVFLNWILVAKLNYGI-VGAA---IAGDISLWLMV---VGLVVYVTSGCFPDAWTGFSLRAFKSLASF 269 (498)
Q Consensus 197 ~~~~~~~~~~~~~i~l~~~li~~~~~g~-~g~~---~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (498)
.....++...+..+++..+++.. ++.. ..+. .+...+..+.+ .+.+|...+ +...............++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~-~~~p~~~~~~~~~~~tl~~~ 237 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIH-DIIPQLSGLEKGDSATLQRM 237 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCcccCCChhHHHH
Confidence 66666665555555544445531 1111 1111 22222222222 122221111 22222222333344578999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHHH
Q 010900 270 VKLSLASAVMLCLELWYYTAVILMVGW-LNNP---EIAVDAISICM 311 (498)
Q Consensus 270 ~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~va~~~~~~ 311 (498)
+++.+|.+........+..+.+.++++ +++. +++++...+.+
T Consensus 238 l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~y 283 (345)
T PF07260_consen 238 LKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATY 283 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhcccc
Confidence 999999999999889899999999988 5442 35555544433
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.48 E-value=3e-05 Score=78.51 Aligned_cols=203 Identities=12% Similarity=0.060 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcc-
Q 010900 46 SKKIWEIAGPVILASGSEFSITFVTAAFVGH--L-GEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD- 121 (498)
Q Consensus 46 ~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~- 121 (498)
-++.++.+.....+++...+.+--|.+++.. + +.++-|.|++++++-+++.-.+...+-.+.-.+.++...+++++
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 3677888888999999999999999999997 5 78999999999999998888888889998888888887665432
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc
Q 010900 122 --------MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQ 192 (498)
Q Consensus 122 --------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 192 (498)
+..+.+...+.+...+++++..+ ...++.++.+++++.=..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 34556666677777777766665 667777777775443223345677899999999999999999999988
Q ss_pred CChhHHHHH---HHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcC
Q 010900 193 SRVWVMTMI---SMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (498)
Q Consensus 193 ~~~~~~~~~---~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 249 (498)
...+-.... +.+..++-+..+++++.. ++|..|..+|.++...+..+...++.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776554444 444456667777888865 78999999999999999999998888763
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.37 E-value=5.2e-05 Score=63.30 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=73.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhc
Q 010900 169 SKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (498)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 248 (498)
+++++++.++..+.....+.+++.||+|..+..++++.++|++++++++. ++|..|+++++.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999974 5799999999999999999998888877
Q ss_pred C
Q 010900 249 G 249 (498)
Q Consensus 249 ~ 249 (498)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.22 E-value=8.5e-06 Score=68.11 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010900 391 AYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRML 470 (498)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 470 (498)
+++++++.++.++....++++++.||+|..+..+.+.. ++++++++++ .+.+|..|+++++.+++....++..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999998 9999999999 77899999999999999999999888887
Q ss_pred hc
Q 010900 471 QT 472 (498)
Q Consensus 471 ~~ 472 (498)
|+
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=0.00044 Score=65.85 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchH
Q 010900 47 KKIWEIAGPVILASGSEFSITFVTAAFVG--H-LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDML 123 (498)
Q Consensus 47 ~~~~~~~~p~~~~~~~~~l~~~i~~~~i~--~-lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~ 123 (498)
++..+......-+.++..+.+=-|.+++. . ++-++-|.|.++.++-+++.-.+...+--....+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 34445555555566677777777888887 2 46678899999999888887888889999999999999988887777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 010900 124 GIYLQ---RSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (498)
Q Consensus 124 ~~~~~---~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (498)
++... ..+.+...++++.+.. ...++..+.++++++=....+...+++.+..+++.+++.+..+++.+.+..+-.-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 66444 4444455555554444 4456666677765533333445778999999999999999999999877655433
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhc
Q 010900 200 ---MISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTS 248 (498)
Q Consensus 200 ---~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 248 (498)
....+.+++-.+++++++.. +|..|..+|.++...+.-+....+.++
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777888888876 477999999999888888777666665
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.21 E-value=0.00061 Score=63.32 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=113.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 010900 271 KLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMI-SLGFHTAISVRVSNELGAGHPKAAKFSIA 349 (498)
Q Consensus 271 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~g~~~~~~~~~~~~ 349 (498)
|-+...............+...++.+..+ +++.|.|+....+.++...+ ..|++++..-..+++..+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 33444455555555555555555554442 78899999999998887766 778888888888876432 233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 010900 350 VSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYY 429 (498)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 429 (498)
.......+..+.......+.. .+..++ .. ..+........++..........+++.++.+......+...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGNPS--LS--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCCch--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444333333333333332222 333322 11 11222222222578888889999999999998888888877
Q ss_pred HhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 430 VFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 430 ~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
+..+.+...+.. ...+..+...+..++.++..++.....+|
T Consensus 150 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454544444422 23348889999999999888876666654
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.18 E-value=0.00096 Score=60.83 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 010900 264 KSLASFVKLSLASAVMLCLELWYYTAVILMVGW-LNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPK 342 (498)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~ 342 (498)
...+++.++-+|.++++....+.-.+.+.-+++ -.+..+.+|+|+++..+.-++..+...+.+.....+.. +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 467899999999999999999999999888876 34445779999999999999999998888887766642 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-----cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010900 343 AAKFSIAVSVITSAAFGILFTLL-VLAFEN-----QFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGW 416 (498)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 416 (498)
-++.. .++ .+.+...+.+ ..+--. -+.+++.-|+++.+.+...+.++.+-.+++++.....+++.=.++
T Consensus 83 -rr~~v-l~~---~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~ 157 (345)
T PF07260_consen 83 -RRKAV-LCM---AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH 157 (345)
T ss_pred -hHHHH-HHH---HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence 12222 222 2223323222 122222 233445567889999999999999999999999999988885666
Q ss_pred hhHHHHHHHHHH
Q 010900 417 QFLVALISIACY 428 (498)
Q Consensus 417 ~~~~~~~~~~~~ 428 (498)
+......++...
T Consensus 158 s~iV~~aSI~~v 169 (345)
T PF07260_consen 158 SWIVGSASIADV 169 (345)
T ss_pred eeEeehHHHHHH
Confidence 666555555544
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.91 E-value=0.0052 Score=56.33 Aligned_cols=163 Identities=15% Similarity=0.230 Sum_probs=104.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 291 ILMVGWLNNPEIAVDAISICMNLQQWTLMI-SLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAF 369 (498)
Q Consensus 291 ~~~~~~~~~~~~~va~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (498)
..++++..+ +++.|.|+....+..+...+ ..++.+...- ..++|.++.++..+.......+.++...++....
T Consensus 8 ~~~lar~l~-~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PF13440_consen 8 LILLARYLG-PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILI 81 (251)
T ss_pred HHHHHHHCC-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 77889999999988877765 4455444333 2345666777777666655555544444433223
Q ss_pred cccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhhcccchhH
Q 010900 370 ENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGING 449 (498)
Q Consensus 370 ~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g 449 (498)
.. .+ ++++ ...++.++++..++..+.......+++.+|.+.......... +..+.+...+. ....+..+
T Consensus 82 ~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 150 (251)
T PF13440_consen 82 AY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLWS 150 (251)
T ss_pred HH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHHH
Confidence 22 33 3332 334556677788888999999999999999999888888877 44433333332 22237888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010900 450 IWSGLLLGCLFQTTVLVIRML 470 (498)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~ 470 (498)
..++..++.++..+......+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 889988888887776554333
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.70 E-value=0.045 Score=51.23 Aligned_cols=337 Identities=9% Similarity=0.039 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 010900 94 GFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIV 173 (498)
Q Consensus 94 ~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 173 (498)
+++..++.|+....++++|...=+||.+++..-+--...+....+..+..+ +-...++.... |=...+
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~-----yk~l~~ 138 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIV-----YKILAC 138 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHH-----HHHHHH
Confidence 345667889999999999998877777776544333333322222222211 11111222111 112234
Q ss_pred hhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHhcC-Ccc
Q 010900 174 PQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG-CFP 252 (498)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~ 252 (498)
...+..+...+...++.+.+|.|.....-.++.++.+.+..++-. .+..|..++..++..+.......+..|. +-+
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 455666667777888999999999999999999888888876653 5889999999999999888888887764 211
Q ss_pred ccccCCCHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH------HHHHHHHHHHHHHHHHH----
Q 010900 253 DAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVD------AISICMNLQQWTLMISL---- 322 (498)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va------~~~~~~~i~~~~~~~~~---- 322 (498)
. ...++.- +..+--....+-.....+...+++.+.-..+++++-.+ .|-+..-...+..+|..
T Consensus 216 ~-~i~FdFL------~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 216 R-RIGFDFL------LYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred c-ccceehh------hhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 1 1122221 11111222334445566666667666554443222211 12222222222223322
Q ss_pred -HHHHHHHHHHHHhhc----C-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHH
Q 010900 323 -GFHTAISVRVSNELG----A-------GHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKL 390 (498)
Q Consensus 323 -~~~~~~~p~~~~~~g----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 390 (498)
.+.+..++.--+.+. . ++.++.....++.+.-..-+-...++.+.++++.+..++.-++ ...+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHH
Confidence 233344443322221 1 2233344445555555566677788889999999999887654 24455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHh-hcccchhHHHHHHHHH
Q 010900 391 AYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGY-GFKLGINGIWSGLLLG 457 (498)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~-~~~~g~~g~~~a~~~~ 457 (498)
.++-.++.-........-++..-..+.+..+..+..-. +.|-.+.++... .|++--.|...|..+.
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~ 431 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLY 431 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHH
Confidence 56666666666665666666666666666555555544 666666666533 2333344555554443
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=72.42 E-value=96 Score=29.98 Aligned_cols=136 Identities=19% Similarity=0.169 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHH
Q 010900 319 MISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATI 398 (498)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~ 398 (498)
++..+++-...-.+|...=+++.+++...+.-...+....+..++..+ ++.+++ +...... ..+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v---------f~~~~~--~si~yk~--l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV---------FFVNNQ--YSIVYKI--LACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh---------hhhcCc--hhHHHHH--HHHHHH
Confidence 345566666666666666566666666655555555444444444321 122222 2222222 234444
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 399 FLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 399 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
...+...+....+.+++|.+.....-.++. ++...++.++.. .+..|.-++..++.....++...+..|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 556667778888899999988665555554 777777777643 588999999999988877776666554
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=63.88 E-value=1.5e+02 Score=29.06 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 010900 340 HPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKL 376 (498)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 376 (498)
+.++.+++.+++.+.+.+......+++.+..-|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999888888777777663
No 48
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=59.06 E-value=19 Score=26.06 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhh
Q 010900 459 LFQTTVLVIRMLQTNWQKEALEAEDRLK 486 (498)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (498)
++...+.+..+++.+.+++.++..++++
T Consensus 20 IvvW~iv~ieYrk~~rqrkId~li~RIr 47 (81)
T PF00558_consen 20 IVVWTIVYIEYRKIKRQRKIDRLIERIR 47 (81)
T ss_dssp HHHHHHH------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444555666666666666555543
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=53.86 E-value=84 Score=22.91 Aligned_cols=40 Identities=18% Similarity=-0.002 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 010900 322 LGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGIL 361 (498)
Q Consensus 322 ~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (498)
.-++......+-+.+.+||++++++..+++.++..+-...
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444456677788899999999999998888654443
No 50
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=48.48 E-value=3.1e+02 Score=27.90 Aligned_cols=254 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHhhcccccccccccccCCccccchhh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChH
Q 010900 2 EETEEETAALMAEKRQKFEIETKTREQDDDLGSHKNF-RERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEV 80 (498)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~ 80 (498)
++.||+.+++..-+..+++.+..+..+......+.+. .........+--..-.|..+.-.+.....+.....+..++++
T Consensus 216 ~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~ 295 (485)
T KOG0569|consen 216 GDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTS 295 (485)
T ss_pred CCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH
Q 010900 81 EFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKE 160 (498)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 160 (498)
-+--.++-..-.... ....|.-.-...+++-..-++-.+| ..+..+.....+..++......+.........
T Consensus 296 i~~~aG~~~~~a~~a--n~~~g~v~~~~t~~~~~lid~~gRR------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (485)
T KOG0569|consen 296 IFKTAGFTPEEAQYA--NLGIGIVNLLSTLVSPFLIDRLGRR------PLLLISLSLMAVALLLMSIALFLSNSFGSWLS 367 (485)
T ss_pred HHHHcCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHHHHHHHH
Q 010900 161 ISELAGKYSKWIVPQLFAYAINSPIQKFLQSQS-RVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMV 239 (498)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~~~~~~~~ 239 (498)
+...+...+....+..-...+...+.+=+-..+ |.........+.++.|.+..+.+... ....|. ...+-..+.+
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l--~~~~g~--~~filF~i~~ 443 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL--QNVIGP--YVFILFVIPL 443 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcc--hhhHHHHHHH
Q ss_pred HHHHHHHhcCCccccccCCCHHhHHHHHH
Q 010900 240 VGLVVYVTSGCFPDAWTGFSLRAFKSLAS 268 (498)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (498)
.+...++++ ..+-.+.+-..+-.+..++
T Consensus 444 ~~~~i~~~~-~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 444 AIFLIYLYR-YLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHHHH-hCcccCCCCHHHHHHHHHh
No 51
>PTZ00370 STEVOR; Provisional
Probab=39.43 E-value=52 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc---chHHHHHH
Q 010900 446 GINGIWSGLLLGCLFQTTVLVIRMLQT---NWQKEALE 480 (498)
Q Consensus 446 g~~g~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 480 (498)
+..|++.-.++--.+..++++++++|| .|+.+.++
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 334444444444444445544444433 36655443
No 52
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=36.87 E-value=3.9e+02 Score=25.70 Aligned_cols=28 Identities=4% Similarity=-0.151 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 342 KAAKFSIAVSVITSAAFGILFTLLVLAF 369 (498)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (498)
++..+..++-++......+|......+.
T Consensus 119 ~~~~~~~r~~l~~~~~~~~pl~~~~~~~ 146 (340)
T PF12794_consen 119 KERVQRLRRQLRWLIWVLVPLLFISIFA 146 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666666666666555444
No 53
>PRK01637 hypothetical protein; Reviewed
Probab=33.41 E-value=4e+02 Score=24.80 Aligned_cols=7 Identities=0% Similarity=-0.140 Sum_probs=2.9
Q ss_pred HHhhcCC
Q 010900 333 SNELGAG 339 (498)
Q Consensus 333 ~~~~g~~ 339 (498)
.+.++.+
T Consensus 117 N~i~~~~ 123 (286)
T PRK01637 117 NTIWRSK 123 (286)
T ss_pred HHHhCCC
Confidence 3344433
No 54
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=33.04 E-value=4e+02 Score=24.61 Aligned_cols=37 Identities=5% Similarity=-0.100 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 010900 314 QQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAV 350 (498)
Q Consensus 314 ~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~ 350 (498)
.+....+...++.......=++..++|.++.++....
T Consensus 106 g~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~ 142 (265)
T TIGR00822 106 GQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVT 142 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 3344455666677777778888888998888665443
No 55
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=32.04 E-value=3e+02 Score=26.37 Aligned_cols=54 Identities=9% Similarity=0.034 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHh
Q 010900 384 IRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGA 437 (498)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 437 (498)
.+.+..+..+...-.++..++.....+++..++.-.+.....+..|+-..|.+-
T Consensus 232 i~ST~aI~~i~~~Q~i~~~iys~~v~~l~~~~~~i~~~~~~~~~~~~Yt~py~~ 285 (328)
T PF02117_consen 232 INSTKAICIISISQFICMFIYSFGVFILRNFRSSISPETFHNIVLWFYTFPYAA 285 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHhcccHHH
Confidence 334444444444444566666666777776665555555444444444444333
No 56
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=31.81 E-value=8.4e+02 Score=28.01 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=15.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 010900 182 NSPIQKFLQSQSRVWVMTMISMAALIFH 209 (498)
Q Consensus 182 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 209 (498)
.......+...++.+...+.+....+-.
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~ 157 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAI 157 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHH
Confidence 3344455666666666666655554433
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=30.13 E-value=1.7e+02 Score=27.75 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=28.6
Q ss_pred CchhHHHHHHHHHHHHhhhHHHhHHHhh-------cccc-hhHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010900 415 GWQFLVALISIACYYVFGLPAGALLGYG-------FKLG-INGIWSGLLLGCLFQTTVLVIRMLQTNW 474 (498)
Q Consensus 415 g~~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (498)
+..+..-..++++ ++..|..++-+.+ |... -+|-++ .....++.+++.+++++|++|
T Consensus 253 ~~N~~mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~-~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPA-VLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHH-HHHHHHHHHHHHHHHHHHcCC
Confidence 3444444555555 4556666664432 1111 123333 333344445555778888887
No 58
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=27.68 E-value=1.6e+02 Score=23.23 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHHH
Q 010900 447 INGIWSGLLLGCLF 460 (498)
Q Consensus 447 ~~g~~~a~~~~~~~ 460 (498)
...+..++.++.+.
T Consensus 69 ~nwavgsF~l~s~~ 82 (118)
T PF12597_consen 69 ANWAVGSFFLGSLG 82 (118)
T ss_pred hhhhhHHHHHHHHH
Confidence 34444444444333
No 59
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=25.75 E-value=6.4e+02 Score=24.71 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=27.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 010900 119 RFDMLGIYLQRSFIVTGATALCLMPF-YIFATPFLK 153 (498)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 153 (498)
++++.+++++.+...+.+...+..++ .....|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999988877655 666667665
No 60
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=25.59 E-value=6.9e+02 Score=25.03 Aligned_cols=56 Identities=14% Similarity=0.002 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010900 301 EIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLV 366 (498)
Q Consensus 301 ~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (498)
-.-++.|+..... ......|.+++...+.++.+.-+.....-+..+..+..+...+
T Consensus 37 Ll~~siygl~~~~----------~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l 92 (432)
T PF06963_consen 37 LLPVSIYGLVRSL----------SAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLL 92 (432)
T ss_pred cHHHHHHHHHHHH----------HHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567654443 3445567788988777666555554444455555544444443
No 61
>PRK09546 zntB zinc transporter; Reviewed
Probab=24.60 E-value=2.3e+02 Score=27.04 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhhHHHhHHHhh-------cccc-hhHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010900 422 LISIACYYVFGLPAGALLGYG-------FKLG-INGIWSGLLLGCLFQTTVLVIRMLQTNW 474 (498)
Q Consensus 422 ~~~~~~~~~~~i~l~~~l~~~-------~~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (498)
..++++ ++.+|+.++-+.+ |... -+|-++... ..++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~-im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCL-LLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcchHHHHHH-HHHHHHHHHHHHHHhccc
Confidence 444554 3556777765432 1111 123333333 344444555677888777
No 62
>PRK10739 putative antibiotic transporter; Provisional
Probab=24.06 E-value=4.3e+02 Score=23.12 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=35.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHH
Q 010900 330 VRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSK 389 (498)
Q Consensus 330 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 389 (498)
|..-..-++.+.++.|+..++.. +.+..+.+.+.+..+.+..+|+=+-+....+..
T Consensus 22 piflslt~~~~~~~r~~ia~~a~----~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGG 77 (197)
T PRK10739 22 PIFMSVLKHLEPKRRRAIMIREL----LIALLVMLVFLFAGEKILAFLNLRTETVSISGG 77 (197)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44444444455566666666555 455556668888999999999866444554443
No 63
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.86 E-value=4.5e+02 Score=25.02 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhhHHHhHHHhh-------cccc-hhHHHHHHHHHHHHHHHHHHH
Q 010900 396 ATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGLPAGALLGYG-------FKLG-INGIWSGLLLGCLFQTTVLVI 467 (498)
Q Consensus 396 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g-~~g~~~a~~~~~~~~~~~~~~ 467 (498)
.......+.....+..+ .......-..++++ ++.+|..++.+.+ |... -+|.|++..+.-++ +++.++
T Consensus 239 ~~~~l~~l~d~~~s~is-~~~N~imk~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~-~~~~~~ 314 (322)
T COG0598 239 LRERLSSLLDAYLSLIN-NNQNEIMKILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLL-ALLLYL 314 (322)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHH-HHHHHH
Confidence 33444444445544442 33344434444444 4566777765542 1111 22555555554444 444477
Q ss_pred HHHhcch
Q 010900 468 RMLQTNW 474 (498)
Q Consensus 468 ~~~~~~~ 474 (498)
+++|++|
T Consensus 315 ~frrk~W 321 (322)
T COG0598 315 YFRRKGW 321 (322)
T ss_pred HHHhcCc
Confidence 7888877
No 64
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=23.13 E-value=7.2e+02 Score=24.37 Aligned_cols=64 Identities=13% Similarity=-0.051 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010900 339 GHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLL 408 (498)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 408 (498)
-|.++..+.-++.+...++-++...++..+ +-.+.....+ +| .......++-+..--+.|+.-.
T Consensus 72 ~Dlr~i~~~g~~~l~~F~~~~~g~viG~~v-a~~l~~~~l~-~~----~wk~ag~l~gsyiGGs~N~~Av 135 (378)
T PF05684_consen 72 ADLRRILRLGGRLLLAFLIGAVGTVIGAVV-AFLLFGGFLG-PE----GWKIAGMLAGSYIGGSVNFVAV 135 (378)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhccc-ch----HHHHHHHHHhcccCchhHHHHH
Confidence 356666666666665555554444444432 2222221111 22 3344445555555555555543
No 65
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=21.25 E-value=6.5e+02 Score=23.16 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 315 QWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAF 369 (498)
Q Consensus 315 ~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (498)
+.+..+...+........=++..++|.+.+.+....+.........+.+++...+
T Consensus 107 q~l~~~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~ 161 (265)
T COG3715 107 QFLTTFVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYF 161 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555677777777777888889999998888888754444444444444433
No 66
>PF14184 YrvL: Regulatory protein YrvL
Probab=21.09 E-value=4.5e+02 Score=21.25 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 010900 129 RSFIVTGATALCLMPFYIFATPFLKLLSQDK-EISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALI 207 (498)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (498)
......+.+.++.+...+....+++++|.+= .......-.+.....+.++..+...+...+.-.+-++... ......
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHHH
Confidence 3334444444444444556666777777552 2222222333344556666666666655555543333332 244456
Q ss_pred HHHHHHHHHHHhhCcccchhHHHH
Q 010900 208 FHVFLNWILVAKLNYGIVGAAIAG 231 (498)
Q Consensus 208 ~~i~l~~~li~~~~~g~~g~~~a~ 231 (498)
+...++++.++.-+.=+.+..+.+
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is~ 107 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISIST 107 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeCc
Confidence 777777777765443333444333
No 67
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.91 E-value=84 Score=28.89 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Q 010900 446 GINGIWSGLLLGCLFQTTVLVIRMLQ 471 (498)
Q Consensus 446 g~~g~~~a~~~~~~~~~~~~~~~~~~ 471 (498)
...|++.-.++--.+..++++++++|
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyr 284 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYR 284 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444554554444
No 68
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.80 E-value=4.9e+02 Score=23.22 Aligned_cols=39 Identities=5% Similarity=0.069 Sum_probs=18.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Q 010900 119 RFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQ 157 (498)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (498)
+++...+.+..++...+++.++++++..+..++..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 344444444444444443333444445555666666653
No 69
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.76 E-value=5.8e+02 Score=24.76 Aligned_cols=17 Identities=0% Similarity=-0.322 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010900 353 ITSAAFGILFTLLVLAF 369 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ 369 (498)
++..-+.+|+.+.--+.
T Consensus 35 ~lv~~~~lP~liF~~i~ 51 (385)
T PF03547_consen 35 KLVFNVFLPALIFSSIA 51 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555444433
No 70
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=20.63 E-value=4.5e+02 Score=21.03 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=9.5
Q ss_pred HHHHhcchHHHHHHHHHH
Q 010900 467 IRMLQTNWQKEALEAEDR 484 (498)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~ 484 (498)
+...+..++++.+|..|+
T Consensus 118 w~~~y~~~k~~i~kiN~k 135 (136)
T PF11457_consen 118 WLIFYLYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444566666665554
Done!