Query 010900
Match_columns 498
No_of_seqs 275 out of 2014
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:38:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.3E-48 4.4E-53 393.4 33.4 430 41-473 6-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 3.8E-20 1.3E-24 185.6 20.1 208 41-249 232-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 86.6 22 0.00077 33.7 37.4 21 444-464 409-429 (451)
4 4aps_A DI-OR tripeptide H+ sym 71.8 73 0.0025 30.6 27.2 23 442-464 445-467 (491)
5 4ev6_A Magnesium transport pro 35.1 64 0.0022 29.7 6.2 55 417-474 276-338 (339)
6 2knc_B Integrin beta-3; transm 32.3 97 0.0033 21.4 5.2 16 448-463 11-26 (79)
7 2k1k_A Ephrin type-A receptor 27.4 66 0.0023 18.6 3.0 22 225-246 14-35 (38)
8 3o7q_A L-fucose-proton symport 26.2 3.9E+02 0.013 24.6 31.6 43 48-90 27-71 (438)
9 2ks1_B Epidermal growth factor 20.0 1.6E+02 0.0053 17.8 4.5 21 228-248 17-37 (44)
10 2l2t_A Receptor tyrosine-prote 17.5 1.8E+02 0.0062 17.5 3.6 6 243-248 31-36 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.3e-48 Score=393.39 Aligned_cols=430 Identities=23% Similarity=0.385 Sum_probs=393.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCc
Q 010900 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~ 120 (498)
..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++++.|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4567889999999999999999999999999999999999999999999998866 778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHH
Q 010900 121 DMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (498)
++.++.+++++.+.++++++.++++.+.++++.+++.+++..+.+..|+++++++.++..+.....+.+++.||++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988776677888988888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-h---CcccchhHHHHHHHHHHHHHHHHHHHhcCCccc--c-ccCCCHHhHHHHHHHHHHH
Q 010900 201 ISMAALIFHVFLNWILVAK-L---NYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPD--A-WTGFSLRAFKSLASFVKLS 273 (498)
Q Consensus 201 ~~~~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 273 (498)
.++++.++|+++++++++. + ++|+.|+++++.+++.+..++..+++++++... + ++++...+++..|+++++|
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 3 689999999999999999999888887752211 1 1222233456889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 010900 274 LASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVI 353 (498)
Q Consensus 274 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~ 353 (498)
+|..++.....+...+++.+++++| ++++++|++++++.++...+..+++++..|.+++++|++|.++.++..+++.+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999997 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhh
Q 010900 354 TSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGVAVGAGWQFLVALISIACYYVFGL 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 433 (498)
+...+++++++++.++++++..+|.+|+++++.+..++++++++.++.+++.+..+++++.||+|.+++.++++.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHhh----cc-cchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010900 434 PAGALLGYG----FK-LGINGIWSGLLLGCLFQTTVLVIRMLQTN 473 (498)
Q Consensus 434 ~l~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 473 (498)
|+++++... ++ +|..|+|+++.+++++..++..++++|+.
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999665 55 99999999999999999888766665543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=3.8e-20 Score=185.62 Aligned_cols=208 Identities=17% Similarity=0.094 Sum_probs=192.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCc
Q 010900 41 RIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRF 120 (498)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~~~ 120 (498)
.+++..|++++.++|.+++++...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++++|++|+
T Consensus 232 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~ 310 (460)
T 3mkt_A 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDT 310 (460)
T ss_dssp STTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4556789999999999999999999999999999999999999999999999987 788899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHH
Q 010900 121 DMLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT 199 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (498)
|+.++..+.+..+...++++.+++ +.+++++..++..|++..+.+..++++.++..++.+++....+.+++.||+|.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 390 (460)
T 3mkt_A 311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390 (460)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 999999999999999999988876 8899999999988888888899999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHh----hC-cccchhHHHHHHHHHHHHHHHHHHHhcC
Q 010900 200 MISMAAL-IFHVFLNWILVAK----LN-YGIVGAAIAGDISLWLMVVGLVVYVTSG 249 (498)
Q Consensus 200 ~~~~~~~-~~~i~l~~~li~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 249 (498)
..++++. ++++++++++... ++ +|..|+++++.+++.+..++..++++|+
T Consensus 391 ~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 9999999999876 56 8999999999999999988877666553
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=86.59 E-value=22 Score=33.75 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=11.9
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 010900 444 KLGINGIWSGLLLGCLFQTTV 464 (498)
Q Consensus 444 ~~g~~g~~~a~~~~~~~~~~~ 464 (498)
..|....++...+..++..++
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 356666666655555555444
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=71.84 E-value=73 Score=30.60 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=10.8
Q ss_pred hcccchhHHHHHHHHHHHHHHHH
Q 010900 442 GFKLGINGIWSGLLLGCLFQTTV 464 (498)
Q Consensus 442 ~~~~g~~g~~~a~~~~~~~~~~~ 464 (498)
....+....+.......++..++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 445 YNAKSEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp GGGSSTTHHHHHTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHH
Confidence 33445555555444444444444
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=35.09 E-value=64 Score=29.66 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHhhhHHHhHHHhh-------cccc-hhHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010900 417 QFLVALISIACYYVFGLPAGALLGYG-------FKLG-INGIWSGLLLGCLFQTTVLVIRMLQTNW 474 (498)
Q Consensus 417 ~~~~~~~~~~~~~~~~i~l~~~l~~~-------~~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (498)
.+..-..++++ ++.+|+.++-+.+ |..+ -+|-|++.. ..++.+++.+++++|++|
T Consensus 276 N~~mk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~-~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 276 NQIMKILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMA-LMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 33334445554 4567777766542 1111 234444443 345555666777888888
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.27 E-value=97 Score=21.42 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 010900 448 NGIWSGLLLGCLFQTT 463 (498)
Q Consensus 448 ~g~~~a~~~~~~~~~~ 463 (498)
.++..+...+-++..+
T Consensus 11 ~~Iv~gvi~gilliGl 26 (79)
T 2knc_B 11 LVVLLSVMGAILLIGL 26 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3344444444333333
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.38 E-value=66 Score=18.65 Aligned_cols=22 Identities=18% Similarity=0.006 Sum_probs=10.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 010900 225 VGAAIAGDISLWLMVVGLVVYV 246 (498)
Q Consensus 225 ~g~~~a~~~~~~~~~~~~~~~~ 246 (498)
.|+.++.+++-.+...+.+++.
T Consensus 14 AGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHHHHe
Confidence 4455555554444444433333
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=26.25 E-value=3.9e+02 Score=24.63 Aligned_cols=43 Identities=5% Similarity=-0.052 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHH
Q 010900 48 KIWEIAGPVILASGSEFSITFVTAAFVGHL--GEVEFAAVSVVQN 90 (498)
Q Consensus 48 ~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l--g~~~~~~~~~~~~ 90 (498)
.+.-...-..+..............+..++ ++.+.+.......
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 71 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFY 71 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333344444444444444454444455544 4555555444333
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.99 E-value=1.6e+02 Score=17.76 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 010900 228 AIAGDISLWLMVVGLVVYVTS 248 (498)
Q Consensus 228 ~~a~~~~~~~~~~~~~~~~~~ 248 (498)
.++-++.-.+..+..+++.+|
T Consensus 17 VVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 333333333333333444444
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=17.49 E-value=1.8e+02 Score=17.48 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=2.4
Q ss_pred HHHHhc
Q 010900 243 VVYVTS 248 (498)
Q Consensus 243 ~~~~~~ 248 (498)
+++.+|
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 334444
Done!