Query 010900
Match_columns 498
No_of_seqs 275 out of 2014
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 16:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010900.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010900hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 63.6 45 0.0033 28.9 41.0 26 444-469 406-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 28.3 1.7E+02 0.012 24.8 17.9 27 221-247 406-432 (447)
3 d1nkzb_ f.3.1.1 (B:) Light-har 8.0 1.7E+02 0.013 15.6 4.2 34 340-373 7-40 (41)
4 d2iuba2 f.17.3.1 (A:286-349) M 6.2 2.4E+02 0.017 16.6 3.2 9 431-439 15-23 (64)
5 d1lghb_ f.3.1.1 (B:) Light-har 5.6 2.6E+02 0.019 15.3 3.6 33 340-372 10-42 (43)
6 d1ppjd2 f.23.11.1 (D:196-241) 4.8 3.1E+02 0.022 15.2 3.0 13 465-477 23-35 (46)
7 d1vpua_ g.34.1.1 (A:) HIV-1 VP 4.8 38 0.0028 18.9 -1.2 21 475-495 4-24 (45)
8 d2yvxa3 f.57.1.1 (A:276-448) M 4.6 6.1E+02 0.045 18.4 7.0 47 98-144 52-98 (173)
9 d1ijdb_ f.3.1.1 (B:) Light-har 3.6 3.6E+02 0.026 14.2 4.2 32 340-371 8-39 (40)
10 d1pv7a_ f.38.1.2 (A:) Lactose 2.3 1.2E+03 0.089 17.8 38.1 64 47-118 7-73 (417)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=63.65 E-value=45 Score=28.95 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=15.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Q 010900 444 KLGINGIWSGLLLGCLFQTTVLVIRM 469 (498)
Q Consensus 444 ~~g~~g~~~a~~~~~~~~~~~~~~~~ 469 (498)
.+|..+..+......++..++.....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777766666666565555544433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=28.29 E-value=1.7e+02 Score=24.84 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=13.5
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHh
Q 010900 221 NYGIVGAAIAGDISLWLMVVGLVVYVT 247 (498)
Q Consensus 221 ~~g~~g~~~a~~~~~~~~~~~~~~~~~ 247 (498)
..|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356555555555555555544444433
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=8.01 E-value=1.7e+02 Score=15.57 Aligned_cols=34 Identities=3% Similarity=0.008 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010900 340 HPKAAKFSIAVSVITSAAFGILFTLLVLAFENQF 373 (498)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 373 (498)
+.++..+....+.|....+++..=++.+.+.|++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577888888888888888888877777777664
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.16 E-value=2.4e+02 Score=16.63 Aligned_cols=9 Identities=11% Similarity=0.120 Sum_probs=4.2
Q ss_pred hhhHHHhHH
Q 010900 431 FGLPAGALL 439 (498)
Q Consensus 431 ~~i~l~~~l 439 (498)
+.+|+.++-
T Consensus 15 iflP~t~i~ 23 (64)
T d2iuba2 15 IFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 445555443
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.60 E-value=2.6e+02 Score=15.27 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010900 340 HPKAAKFSIAVSVITSAAFGILFTLLVLAFENQ 372 (498)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (498)
+-+++.+.+..+++....+++..=++.+...|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345667777777777777777766676666654
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.79 E-value=3.1e+02 Score=15.16 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=8.6
Q ss_pred HHHHHHhcchHHH
Q 010900 465 LVIRMLQTNWQKE 477 (498)
Q Consensus 465 ~~~~~~~~~~~~~ 477 (498)
..++.+|..|...
T Consensus 23 l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 23 LVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 3566777778754
No 7
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=4.75 E-value=38 Score=18.85 Aligned_cols=21 Identities=5% Similarity=0.050 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCC
Q 010900 475 QKEALEAEDRLKTMEGPPDPQ 495 (498)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~ 495 (498)
.+.+++++|+-.....+++.+
T Consensus 4 drLi~RIrERAEDSGNESeGD 24 (45)
T d1vpua_ 4 DRLIDRITERAEDSGNESEGD 24 (45)
T ss_dssp HHHHHHHHHTTCHHHHTTTTH
T ss_pred HHHHHHHHHHcccCCCCCccc
Confidence 344556666555444444433
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.63 E-value=6.1e+02 Score=18.42 Aligned_cols=47 Identities=17% Similarity=-0.041 Sum_probs=26.0
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 010900 98 GIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPF 144 (498)
Q Consensus 98 ~~~~gl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (498)
.-..|-.+.....-+-+.|+-+.++.++.+.+=+..++..+..+.++
T Consensus 52 gGN~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 52 GGNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333334444456667777777777777777655543
No 9
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.57 E-value=3.6e+02 Score=14.17 Aligned_cols=32 Identities=3% Similarity=0.030 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010900 340 HPKAAKFSIAVSVITSAAFGILFTLLVLAFEN 371 (498)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (498)
+.+++.+....+.|....+++..=++.+.+.|
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45677888888888888888777666666554
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.34 E-value=1.2e+03 Score=17.82 Aligned_cols=64 Identities=6% Similarity=-0.040 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c--cChHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Q 010900 47 KKIWEIAGPVILASGSEFSITFVTAAFVG-H--LGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAG 118 (498)
Q Consensus 47 ~~~~~~~~p~~~~~~~~~l~~~i~~~~i~-~--lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~g~~ 118 (498)
|+++..+.-.+...+......-....++. . +++.++|.......+...+ .+-..-.+++.+|+|
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i--------~~~~~G~l~Dr~grr 73 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLL--------FQPLFGLLSDKLGLR 73 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------THHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCch
Confidence 45555666555555555444433333343 2 4566666655544444333 222223456666654
Done!