BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010902
         (498 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
           Sap
 pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
           With Maltotetraose
          Length = 877

 Score = 30.0 bits (66), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 348 IEGSFDPPNSFLGLKVSAGETTTLSMKPWKFEQSVYGYSAILNWFLHDSMDGREVFSS 405
           I+G F+P      +  +    TT   + W+F+  +Y YS  L   L+   DG +V +S
Sbjct: 96  IKGDFNPKQGHFNISYNGNNVTT--RQSWEFKDQLYAYSGNLGAVLN--QDGSKVEAS 149


>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
           Paralogue S-D1 (Smipp-S-D1)
 pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
           Paralogue S-D1 (Smipp-S-D1)
          Length = 235

 Score = 28.5 bits (62), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 42  LNLFVTKNLQSPSLIFSIAADFSVPISLWSSKAFKINPKSSKLLQ 86
           L+   TK ++ PSL++    D SV +S W S  FK    S  L++
Sbjct: 97  LDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLME 141


>pdb|1WJN|A Chain A, Solution Structure Of The C-Terminal Ubiquitin-Like Domain
           Of Mouse Tubulin-Specific Chaperone E
          Length = 97

 Score = 28.5 bits (62), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 307 EKHFPSRISLQLTPTMQTNILSVSVSK------SSENPTREIEIEKTIE 349
           EK  P  +++Q    + + +L V VS+      SS+ P REIE+E  ++
Sbjct: 26  EKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQ 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,417,771
Number of Sequences: 62578
Number of extensions: 562890
Number of successful extensions: 1120
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 3
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)