Query 010902
Match_columns 498
No_of_seqs 41 out of 43
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 05:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4792 EscU Type III secretor 63.3 9.5 0.00021 40.4 4.3 76 97-181 99-190 (349)
2 PRK12473 hypothetical protein; 56.7 9.8 0.00021 37.8 2.9 39 428-475 104-143 (198)
3 PF14097 SpoVAE: Stage V sporu 30.7 1.1E+02 0.0024 30.2 5.6 56 229-284 51-109 (180)
4 PF13617 Lipoprotein_19: YnbE- 24.5 53 0.0012 27.0 1.9 22 273-294 28-50 (59)
5 PF03633 Glyco_hydro_65C: Glyc 23.4 1.5E+02 0.0033 22.6 4.1 27 265-291 10-36 (54)
6 PF15013 CCSMST1: CCSMST1 fami 21.5 92 0.002 26.9 2.8 38 129-166 35-72 (77)
7 PF14026 DUF4242: Protein of u 20.6 26 0.00057 29.3 -0.6 9 141-149 49-57 (77)
8 PF01506 HCV_NS5a: Hepatitis C 16.8 25 0.00054 24.1 -1.2 9 9-17 6-14 (23)
9 PF07505 Gp37_Gp68: Phage prot 14.9 95 0.0021 31.9 1.7 72 384-470 184-258 (261)
10 PRK10076 pyruvate formate lyas 12.5 93 0.002 30.5 0.8 16 427-442 31-48 (213)
No 1
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=63.31 E-value=9.5 Score=40.35 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCCCCCCccccccCcCCCCCchhhhH-------------HHHHHHHHHhhhhcCCccchhhhHhhhhhhhc
Q 010902 97 FIEDVLNYGPNSAKNNSLLKFLKFDSMSNFKDIFN-------------LAFLTLLFLICIYEAPADLRSGCLNTIKNELA 163 (498)
Q Consensus 97 li~~vl~y~p~~~~~~~~~~~~kl~s~~~~~~~Fn-------------Laflt~lf~lCiyeAP~~l~~~~~~sl~~~l~ 163 (498)
++-.|+.||+--+...-...+.|++..+|+|.+|+ .+.|+++||+|.+---.++ -.|.
T Consensus 99 v~s~v~q~Gfl~a~eai~p~~~kINP~~~~K~ifS~rS~vEl~KS~lKV~vLslif~f~l~~~~~t~---------~~lp 169 (349)
T COG4792 99 VLSGVLQVGFLFALEAIKPKAEKINPVQNAKRIFSLRSVVELLKSLLKVVVLSLIFWFMLHGYANTF---------LYLP 169 (349)
T ss_pred HHHHHhhheeeEeecccCCcccccChhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhcc
Confidence 44556677762222112444556666666666555 5889999999987433332 3567
Q ss_pred ccCchhHH---HHHHHHhCCC
Q 010902 164 GCQPRAAS---KLLMKQLGSN 181 (498)
Q Consensus 164 ~~~~r~A~---~~lm~~lG~n 181 (498)
.|..++|. ..+|+.|+..
T Consensus 170 ~CG~~C~~~Vv~~~~~~L~~g 190 (349)
T COG4792 170 GCGLYCALPVVSFLLRLLWVG 190 (349)
T ss_pred ccccchHHHHHHHHHHHHHHH
Confidence 77777765 5666666444
No 2
>PRK12473 hypothetical protein; Provisional
Probab=56.67 E-value=9.8 Score=37.76 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=34.0
Q ss_pred CC-ccccCceEEecccCCCeeEEEeccccCCceeEEEEeeEEEEEEeCC
Q 010902 428 RP-FTRQGGVIFAGDEYGERVWWKFDKSVAGRTMEWEIRGWIWLTYWPN 475 (498)
Q Consensus 428 rP-Ftk~GGViFaGdEyge~v~WR~~k~~eGktm~W~I~G~iw~TY~PN 475 (498)
+| |++++|+.||.+|.- .-..+||+| ..+|.+|+-|.++
T Consensus 104 LP~v~ke~~iLFa~ee~K-------~i~l~gKki--~Ye~n~WiG~~R~ 143 (198)
T PRK12473 104 LPAITDEQGILFAKEEVK-------NATLDGKKM--KYEGNVIIGSGRK 143 (198)
T ss_pred cccCCCCceeEEeccchh-------ceeECCeEE--EEeccEEEecCCC
Confidence 45 999999999998832 667899999 9999999999975
No 3
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=30.72 E-value=1.1e+02 Score=30.16 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=41.2
Q ss_pred eeeeeEEeeecCCCC--CChhhhhhhhcccceeeeEEEEEEEEEEec-ceEEEEEeeee
Q 010902 229 LFCPVIAMDIVSSSN--PSLDERLLFSLNYHQLEGVIQFNYKVIIQE-KWVNLMLNIDN 284 (498)
Q Consensus 229 ly~PVlaM~ve~~~~--~~~de~l~~sL~yqQlE~viQl~y~V~~~~-~~i~V~V~Vdn 284 (498)
-|=||+.|--..... -+-|+.|.|-.+|.|+|+.==+..+=.-+. +|+.|.|-||+
T Consensus 51 ~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~IeVLG~iAVASnT~~~~g~~VD~sidr 109 (180)
T PF14097_consen 51 PHDPVLVMFDDKGFIGEGPGEQALEYVANHPDIEVLGAIAVASNTHGAEGTKVDVSIDR 109 (180)
T ss_pred CCCCEEEEEeCCCCCCCCccHHHHHHHHcCCCceEEEEEEEEecCCCCCceEeEEEEcC
Confidence 367999997666554 467789999999999997444433333343 89999998886
No 4
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=24.45 E-value=53 Score=27.01 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=15.4
Q ss_pred cceEEEEEeeee-EEEEEEeehh
Q 010902 273 EKWVNLMLNIDN-IRCDIIRLVN 294 (498)
Q Consensus 273 ~~~i~V~V~Vdn-iR~~V~~l~~ 294 (498)
+=-|.++|+||| ||++|++-.-
T Consensus 28 PI~InlNVkI~heI~vkvDkel~ 50 (59)
T PF13617_consen 28 PITINLNVKIEHEIRVKVDKELD 50 (59)
T ss_pred CEEEEEEEEEeEEEEEEhHHHHH
Confidence 345667788864 8999988543
No 5
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=23.40 E-value=1.5e+02 Score=22.59 Aligned_cols=27 Identities=4% Similarity=0.498 Sum_probs=23.2
Q ss_pred EEEEEEEecceEEEEEeeeeEEEEEEe
Q 010902 265 FNYKVIIQEKWVNLMLNIDNIRCDIIR 291 (498)
Q Consensus 265 l~y~V~~~~~~i~V~V~VdniR~~V~~ 291 (498)
+.|++..|+.+|+|.|.=+.|++....
T Consensus 10 l~F~~~~rg~~l~v~i~~~~v~v~~~~ 36 (54)
T PF03633_consen 10 LSFRLRYRGHWLEVEITHEKVTVTLLS 36 (54)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCEEEEEEEECCEEEEEEcc
Confidence 678899999999999998888887775
No 6
>PF15013 CCSMST1: CCSMST1 family
Probab=21.46 E-value=92 Score=26.91 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhhhhcCCccchhhhHhhhhhhhcccC
Q 010902 129 IFNLAFLTLLFLICIYEAPADLRSGCLNTIKNELAGCQ 166 (498)
Q Consensus 129 ~FnLaflt~lf~lCiyeAP~~l~~~~~~sl~~~l~~~~ 166 (498)
.+++.+..++.|+|+.--..|+-...-++|..++.+.+
T Consensus 35 ~is~sl~~fliyFC~lReEnDiD~~L~~~L~e~~~~le 72 (77)
T PF15013_consen 35 PISLSLAAFLIYFCFLREENDIDRWLDKNLYERVPGLE 72 (77)
T ss_pred hhHHHHHHHHHHHhhccccccHHHHHHhhHHhhccCcc
Confidence 67888888999999999999998888888888877654
No 7
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=20.59 E-value=26 Score=29.34 Aligned_cols=9 Identities=56% Similarity=1.446 Sum_probs=8.2
Q ss_pred hhhhcCCcc
Q 010902 141 ICIYEAPAD 149 (498)
Q Consensus 141 lCiyeAP~~ 149 (498)
+|+||||+.
T Consensus 49 ~Cly~Ap~~ 57 (77)
T PF14026_consen 49 FCLYEAPDE 57 (77)
T ss_pred EEEEECCCH
Confidence 699999987
No 8
>PF01506 HCV_NS5a: Hepatitis C virus non-structural 5a protein membrane anchor; InterPro: IPR002868 The molecular function of the non-structural 5a viral protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA-dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1R7F_A 1R7E_A 1R7C_A 1R7G_A 1R7D_A.
Probab=16.81 E-value=25 Score=24.07 Aligned_cols=9 Identities=33% Similarity=1.202 Sum_probs=7.1
Q ss_pred ccchhcccC
Q 010902 9 DMFDWIQNL 17 (498)
Q Consensus 9 Dvw~Wi~~L 17 (498)
|+|.|+|++
T Consensus 6 diWdWvc~~ 14 (23)
T PF01506_consen 6 DIWDWVCRV 14 (23)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788898864
No 9
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=14.89 E-value=95 Score=31.85 Aligned_cols=72 Identities=22% Similarity=0.377 Sum_probs=52.2
Q ss_pred cCeeEEEEEEecCCCceEEeecCccccccCCcchh--cccccCCCCCC-ccccCceEEecccCCCeeEEEeccccCCcee
Q 010902 384 GYSAILNWFLHDSMDGREVFSSKPAKMALLNPKAW--FKDRYSSAYRP-FTRQGGVIFAGDEYGERVWWKFDKSVAGRTM 460 (498)
Q Consensus 384 G~~a~f~w~Lhd~~~G~ev~sskP~k~~~~np~~~--f~~Ry~~~~rP-Ftk~GGViFaGdEyge~v~WR~~k~~eGktm 460 (498)
.+...++|+.-++.+|.. .+| .+|.|= .|+-+..++-| |=||-| +-...++..+.|++|.+.|+.|
T Consensus 184 ~~~~~IdWVIvGGESG~~---ARp-----~~~~Wvr~irdqC~~~gvpFffKQwG---~~~~~~~~~~~~~gkk~aGr~L 252 (261)
T PF07505_consen 184 LDLEGIDWVIVGGESGPG---ARP-----MHPDWVRSIRDQCAAAGVPFFFKQWG---GSRFPWGEDMYRVGKKAAGRLL 252 (261)
T ss_pred ccCCCCCEEEECCCcCCC---CCc-----CCHHHHHHHHHHHHHcCCcEEEEeCC---CccccCccceeecCcccccccc
Confidence 344559999999988876 344 467532 45677778888 568888 3334567789999999999987
Q ss_pred EEEEeeEEEE
Q 010902 461 EWEIRGWIWL 470 (498)
Q Consensus 461 ~W~I~G~iw~ 470 (498)
.|++|=
T Consensus 253 ----dG~~~~ 258 (261)
T PF07505_consen 253 ----DGRTWD 258 (261)
T ss_pred ----CCeEec
Confidence 577763
No 10
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=12.49 E-value=93 Score=30.49 Aligned_cols=16 Identities=44% Similarity=0.667 Sum_probs=12.6
Q ss_pred CCCc--cccCceEEeccc
Q 010902 427 YRPF--TRQGGVIFAGDE 442 (498)
Q Consensus 427 ~rPF--tk~GGViFaGdE 442 (498)
.+|| .+.|||.|+|.|
T Consensus 31 ~~~f~~~sggGVt~SGGE 48 (213)
T PRK10076 31 DDIFFRTSGGGVTLSGGE 48 (213)
T ss_pred hhHhhcCCCCEEEEeCch
Confidence 4677 367999999976
Done!