Query 010902
Match_columns 498
No_of_seqs 41 out of 43
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozn_A O-GLCNACASE NAGJ; EF ha 22.9 2.5E+02 0.0087 26.1 7.6 71 252-335 68-140 (165)
2 2vo8_A EXO-alpha-sialidase; hy 17.7 4.7E+02 0.016 23.9 8.0 71 252-335 46-118 (143)
3 2pkp_A Homoaconitase small sub 10.8 95 0.0032 28.5 1.6 14 433-446 51-64 (170)
4 1v7l_A 3-isopropylmalate dehyd 10.7 93 0.0032 28.4 1.5 15 432-446 50-64 (163)
5 3drx_A BTB/POZ domain-containi 9.4 1.2E+02 0.004 28.8 1.7 36 374-409 145-193 (202)
6 1yiq_A Quinohemoprotein alcoho 8.3 3.6E+02 0.012 28.5 5.1 45 428-472 480-535 (689)
7 1w6s_A Methanol dehydrogenase 8.2 4.6E+02 0.016 27.7 5.8 46 427-472 477-533 (599)
8 1r7c_A Genome polyprotein; mem 8.0 61 0.0021 22.9 -0.7 8 9-16 7-14 (31)
9 2e6x_A TT1592, hypothetical pr 7.9 2.4E+02 0.0081 22.9 2.6 25 441-465 7-31 (69)
10 3nhi_A D7 protein; all helical 7.7 5.4E+02 0.018 25.6 5.7 44 161-210 229-272 (296)
No 1
>2ozn_A O-GLCNACASE NAGJ; EF hand, toxin; 1.60A {Clostridium perfringens} SCOP: b.2.2.2 PDB: 2o4e_A 2jh2_A
Probab=22.94 E-value=2.5e+02 Score=26.08 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=48.7
Q ss_pred hhcccceeeeEEEEEEEEEEecceEEEE--EeeeeEEEEEEeehhhccccccCCCCCCCCCcceeEEEEeccccceeeee
Q 010902 252 FSLNYHQLEGVIQFNYKVIIQEKWVNLM--LNIDNIRCDIIRLVNKTLMNERGVGVDEKHFPSRISLQLTPTMQTNILSV 329 (498)
Q Consensus 252 ~sL~yqQlE~viQl~y~V~~~~~~i~V~--V~VdniR~~V~~l~~~~l~~e~~~G~~EkHFPSRI~L~vtP~~~t~~~sv 329 (498)
|.|+|.+.+ .||+-... +|++.-.. +.=-.||+-+++|+++-. ...+ --+++.+||...++++.+
T Consensus 68 ~TlnYd~a~--f~lveitS-~dg~~I~~KEvePGkVRIlaASlgne~I-~~~g---------dL~k~~lt~Ks~se~~~~ 134 (165)
T 2ozn_A 68 FTLNYDENA--FEYVEAIS-DDGVFVNAKKIEDGKVRVLVSSLTGEPL-PAKE---------VLAKVVLRAEAKAEGSNL 134 (165)
T ss_dssp EEEECCTTT--EEEEEEEC-CTTEEEEEEEEETTEEEEEEEESSSSCC-CSSS---------EEEEEEEEECSCEEEEEE
T ss_pred heeccChhH--EEEEEEec-ccceEEeecccCCCeEEEEEeccCCCCc-CCcc---------cEEEEEEEeeccceeeEE
Confidence 777887743 56665555 77765111 122368999999986433 2222 268999999999999999
Q ss_pred EeeecC
Q 010902 330 SVSKSS 335 (498)
Q Consensus 330 Sl~~SS 335 (498)
+++++.
T Consensus 135 svtn~~ 140 (165)
T 2ozn_A 135 SVTNSS 140 (165)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 999876
No 2
>2vo8_A EXO-alpha-sialidase; hydrolase, cohesin, high affinity, glycoside hydrolase; 1.7A {Clostridium perfringens} SCOP: b.2.2.2
Probab=17.72 E-value=4.7e+02 Score=23.89 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=48.4
Q ss_pred hhcccceeeeEEEEEEEEEEecceEEEEEe--eeeEEEEEEeehhhccccccCCCCCCCCCcceeEEEEeccccceeeee
Q 010902 252 FSLNYHQLEGVIQFNYKVIIQEKWVNLMLN--IDNIRCDIIRLVNKTLMNERGVGVDEKHFPSRISLQLTPTMQTNILSV 329 (498)
Q Consensus 252 ~sL~yqQlE~viQl~y~V~~~~~~i~V~V~--VdniR~~V~~l~~~~l~~e~~~G~~EkHFPSRI~L~vtP~~~t~~~sv 329 (498)
|.|+|.+ +..||+-...++|++.-..=. =-.||+-+++|+..-. -.| --+++.+||...++++.+
T Consensus 46 ~TlnYd~--a~f~l~eitS~~d~~~V~~KE~ePGkVRIl~ASlG~~i~----~~~-------dL~k~~lt~Ks~se~~~~ 112 (143)
T 2vo8_A 46 YLFEYNA--EAFILNEITSFNDSLFVKSKEVEPGKVRILVASLGNEIE----KDS-------DLVKVNLTPKISSELEVL 112 (143)
T ss_dssp EEEECCT--TTEEEEEEEESSTTEEEEEEEEETTEEEEEEEESSSCBC----TTC-------EEEEEEEEECSCEEEEEE
T ss_pred heeccCh--hhEEEEEeeecccceEEeecccCCCeEEEEEhhcCCCCC----Ccc-------cEEEEEEEeeccceeeEE
Confidence 5566665 346777777777765433222 2368999999876222 122 368999999999999999
Q ss_pred EeeecC
Q 010902 330 SVSKSS 335 (498)
Q Consensus 330 Sl~~SS 335 (498)
|++++.
T Consensus 113 svtn~~ 118 (143)
T 2vo8_A 113 GLTTAL 118 (143)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 998876
No 3
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=10.83 E-value=95 Score=28.47 Aligned_cols=14 Identities=43% Similarity=0.862 Sum_probs=12.5
Q ss_pred cCceEEecccCCCe
Q 010902 433 QGGVIFAGDEYGER 446 (498)
Q Consensus 433 ~GGViFaGdEyge~ 446 (498)
.|.||+||++||.+
T Consensus 51 ~~~iivaG~nfG~G 64 (170)
T 2pkp_A 51 EGDVIVAGENFGCG 64 (170)
T ss_dssp TTCEEEECTTBTBS
T ss_pred CCCEEEecCCCCCC
Confidence 48999999999975
No 4
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=10.72 E-value=93 Score=28.38 Aligned_cols=15 Identities=40% Similarity=0.804 Sum_probs=12.9
Q ss_pred ccCceEEecccCCCe
Q 010902 432 RQGGVIFAGDEYGER 446 (498)
Q Consensus 432 k~GGViFaGdEyge~ 446 (498)
+.|.|++||+.||.+
T Consensus 50 ~~g~iivag~nfG~G 64 (163)
T 1v7l_A 50 RPGDVVVAGKNFGIG 64 (163)
T ss_dssp CTTCEEECCSSBTBS
T ss_pred CCCCEEEecCcCCCC
Confidence 358999999999975
No 5
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=9.41 E-value=1.2e+02 Score=28.84 Aligned_cols=36 Identities=42% Similarity=0.563 Sum_probs=10.5
Q ss_pred CCccceeee-------ccC--eeEEEEE----EecCCCceEEeecCccc
Q 010902 374 KPWKFEQSV-------YGY--SAILNWF----LHDSMDGREVFSSKPAK 409 (498)
Q Consensus 374 kpWRfEQ~~-------~G~--~a~f~w~----Lhd~~~G~ev~sskP~k 409 (498)
--|||||.+ +|+ -|-|=.+ ||++-.|.+...++..|
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (202)
T 3drx_A 145 DGWKFEQLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAK 193 (202)
T ss_dssp TTCEEEEEEEC------------CEEEEEEECCC---------------
T ss_pred cccChhheEeccccccCCCcCcceEEEEEeecccCCCCCcccCcccchh
Confidence 449999996 343 3444444 36656676665554433
No 6
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=8.31 E-value=3.6e+02 Score=28.54 Aligned_cols=45 Identities=18% Similarity=0.500 Sum_probs=30.8
Q ss_pred CCccccCceEEecccCC---------CeeEEEe--ccccCCceeEEEEeeEEEEEE
Q 010902 428 RPFTRQGGVIFAGDEYG---------ERVWWKF--DKSVAGRTMEWEIRGWIWLTY 472 (498)
Q Consensus 428 rPFtk~GGViFaGdEyg---------e~v~WR~--~k~~eGktm~W~I~G~iw~TY 472 (498)
-|++..||+||.|+.-| -.+.|++ +....+.-|-|++.|+.++.-
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTF 535 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEE
Confidence 38899999999997432 2345665 444556677788888877653
No 7
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=8.22 E-value=4.6e+02 Score=27.69 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=32.4
Q ss_pred CCCccccCceEEecccCC---------CeeEEEec--cccCCceeEEEEeeEEEEEE
Q 010902 427 YRPFTRQGGVIFAGDEYG---------ERVWWKFD--KSVAGRTMEWEIRGWIWLTY 472 (498)
Q Consensus 427 ~rPFtk~GGViFaGdEyg---------e~v~WR~~--k~~eGktm~W~I~G~iw~TY 472 (498)
.-|.+..||+||.|+.-| -++.|++. ....+.-|-|++.|++++.-
T Consensus 477 ~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 477 GGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp SBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence 357888999999997422 23567663 34566778888889888764
No 8
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=7.95 E-value=61 Score=22.86 Aligned_cols=8 Identities=50% Similarity=1.340 Sum_probs=5.9
Q ss_pred ccchhccc
Q 010902 9 DMFDWIQN 16 (498)
Q Consensus 9 Dvw~Wi~~ 16 (498)
|||.|+|.
T Consensus 7 ~iwdWvct 14 (31)
T 1r7c_A 7 DIWDWICE 14 (31)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67788775
No 9
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=7.90 E-value=2.4e+02 Score=22.95 Aligned_cols=25 Identities=12% Similarity=0.453 Sum_probs=18.7
Q ss_pred ccCCCeeEEEeccccCCceeEEEEe
Q 010902 441 DEYGERVWWKFDKSVAGRTMEWEIR 465 (498)
Q Consensus 441 dEyge~v~WR~~k~~eGktm~W~I~ 465 (498)
++.|....||++|+...-.+-=|++
T Consensus 7 ~~LG~~LvWRiGk~e~e~~vvVRvG 31 (69)
T 2e6x_A 7 DKLGQHLVWRMGRAEDEDVLVVRVG 31 (69)
T ss_dssp HHTTCCEEEEEEECSSSSCEEEEEE
T ss_pred HHHhceeEEeeccccccCcEEEEEe
Confidence 3578889999999887776655543
No 10
>3nhi_A D7 protein; all helical, odorant-binding protein, ligand-binding protein transport protein; HET: EAH; 1.43A {Anopheles stephensi} PDB: 3ngv_A* 3nht_A*
Probab=7.66 E-value=5.4e+02 Score=25.58 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=34.9
Q ss_pred hhcccCchhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 010902 161 ELAGCQPRAASKLLMKQLGSNLEEQWMRSINLAITNWILELQATHRTITT 210 (498)
Q Consensus 161 ~l~~~~~r~A~~~lm~~lG~nlEeqwMRsln~altnW~~e~~~~~~~~~~ 210 (498)
-|..|.+..|-..+-.+|.++.++.||.++.| +|+|+++.....
T Consensus 229 ~l~~C~~~~A~~yy~CLl~~~~~~~Fk~afd~------rElrsa~~~~~~ 272 (296)
T 3nhi_A 229 VLASCKGSEAYDYYVCLVNSRLKQHFKNAFDF------HELRSADYAYLL 272 (296)
T ss_dssp HHHTCSCCSHHHHHHHHHTSTTHHHHHHHHHH------HHHHHHCTTTTC
T ss_pred HHHhccccchHHHHHHHhCCccHHHHHHHHHH------HHHHhccccccc
Confidence 34446655688999999999999999999996 799988875333
Done!