Query 010903
Match_columns 498
No_of_seqs 225 out of 715
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.7E-34 1.3E-38 235.4 6.4 74 147-221 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 8.8E-34 3E-38 234.2 5.1 75 146-221 4-78 (78)
3 2rpr_A Flywch-type zinc finger 74.8 1.2 3.9E-05 36.1 1.6 49 159-220 24-74 (87)
4 1cz6_A Protein (androctonin); 28.9 13 0.00044 24.9 0.2 9 181-189 16-24 (26)
5 1odh_A MGCM1; transcription fa 20.0 82 0.0028 29.6 3.7 38 183-223 123-160 (174)
6 2jvx_A NF-kappa-B essential mo 13.0 52 0.0018 22.5 0.4 15 2-16 13-27 (28)
7 1xiw_B T-cell surface glycopro 7.9 1.2E+02 0.004 24.3 0.9 49 160-217 17-75 (79)
8 3kgb_A Thymidylate synthase 1/ 6.7 63 0.0022 32.4 -1.5 11 161-171 114-124 (294)
9 3ed7_A Tsase, TS, thymidylate 6.4 63 0.0022 32.4 -1.7 12 160-171 116-127 (295)
10 2vsd_A CHIR AB1; immune system 5.0 1.1E+02 0.0037 24.0 -0.8 17 202-218 87-103 (105)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.7e-34 Score=235.42 Aligned_cols=74 Identities=53% Similarity=1.027 Sum_probs=71.7
Q ss_pred eEEEeecCCCCCCCCCcccccccccccCCCCCCCCccccCCCCCCccccceeeecCCCcEEEEEEccccCCCCCC
Q 010903 147 RVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTISPTCPVRKQVQRWHEDMSILITTYEGTHNHPLPI 221 (498)
Q Consensus 147 Rv~v~a~~~~~~~~DGy~WRKYGQK~iKgn~~PRsYYRCT~s~gC~arKqVQr~~dD~~i~~ttY~G~HnH~~P~ 221 (498)
||+|++.++.++++|||+|||||||.|||+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 89999999999999999999999999999999999999998 699999999999999999999999999999886
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.98 E-value=8.8e-34 Score=234.21 Aligned_cols=75 Identities=51% Similarity=0.996 Sum_probs=68.9
Q ss_pred ceEEEeecCCCCCCCCCcccccccccccCCCCCCCCccccCCCCCCccccceeeecCCCcEEEEEEccccCCCCCC
Q 010903 146 ARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTISPTCPVRKQVQRWHEDMSILITTYEGTHNHPLPI 221 (498)
Q Consensus 146 ~Rv~v~a~~~~~~~~DGy~WRKYGQK~iKgn~~PRsYYRCT~s~gC~arKqVQr~~dD~~i~~ttY~G~HnH~~P~ 221 (498)
.||+|++.++.++++|||+|||||||.|||+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999 699999999999999999999999999999884
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=74.78 E-value=1.2 Score=36.14 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=31.9
Q ss_pred CCCCcccccccccccCCCCCCCCccccCCC--CCCccccceeeecCCCcEEEEEEccccCCCCC
Q 010903 159 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIS--PTCPVRKQVQRWHEDMSILITTYEGTHNHPLP 220 (498)
Q Consensus 159 ~~DGy~WRKYGQK~iKgn~~PRsYYRCT~s--~gC~arKqVQr~~dD~~i~~ttY~G~HnH~~P 220 (498)
+-|||..++--+ . ..+.|.||+.. .+|.||-.... ++ + ...+.|||++.
T Consensus 24 v~~Gy~Y~~~~~--~----~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA--A----GEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE--C----SSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred EECCEEEEeeec--C----CCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 569998775321 1 23689999974 48999855432 21 2 34788999754
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=28.92 E-value=13 Score=24.92 Aligned_cols=9 Identities=56% Similarity=1.383 Sum_probs=7.2
Q ss_pred CccccCCCC
Q 010903 181 AYYRCTISP 189 (498)
Q Consensus 181 sYYRCT~s~ 189 (498)
.||+||.++
T Consensus 16 cyykctnrp 24 (26)
T 1cz6_A 16 CYYKCTNRP 24 (26)
T ss_dssp CEEEECCCC
T ss_pred eEEEccCCC
Confidence 499999863
No 5
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=19.95 E-value=82 Score=29.58 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=20.9
Q ss_pred cccCCCCCCccccceeeecCCCcEEEEEEccccCCCCCCCc
Q 010903 183 YRCTISPTCPVRKQVQRWHEDMSILITTYEGTHNHPLPISA 223 (498)
Q Consensus 183 YRCT~s~gC~arKqVQr~~dD~~i~~ttY~G~HnH~~P~sa 223 (498)
+.|.-.-|-||. ++.|..+ ..|| ..-+|+|+||+|.+.
T Consensus 123 ~~Crgh~GyPVT-hFWrh~~-~~if-FqaKG~HDHpRPe~k 160 (174)
T 1odh_A 123 IPCRGHGGFPVT-NFWRHDG-RFIF-FQSKGEHDHPRPETK 160 (174)
T ss_dssp ECCCTBTTBCCE-EEEEECS-SBEE-EEEECCCCSCCCCCH
T ss_pred EeccCcCCCcce-EEEEEcC-CEEE-EecccccCCCCCCCc
Confidence 344432344443 3344333 2233 455899999999864
No 6
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=13.04 E-value=52 Score=22.45 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.2
Q ss_pred cchhHHHHHHHHHHH
Q 010903 2 AKDYQSLQSHFLDIL 16 (498)
Q Consensus 2 ~~dY~sLQm~f~~i~ 16 (498)
+=|+++||.||-|-+
T Consensus 13 ~Pd~kt~~~H~e~~~ 27 (28)
T 2jvx_A 13 APDMDTLQIHVMECI 27 (28)
T ss_dssp ESSHHHHHHHHHHCC
T ss_pred CcChHHHHHHHHHHc
Confidence 358999999998754
No 7
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=7.92 E-value=1.2e+02 Score=24.33 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCcccccccccc--------cC--CCCCCCCccccCCCCCCccccceeeecCCCcEEEEEEccccCC
Q 010903 160 NDGCQWRKYGQKI--------AK--GNPCPRAYYRCTISPTCPVRKQVQRWHEDMSILITTYEGTHNH 217 (498)
Q Consensus 160 ~DGy~WRKYGQK~--------iK--gn~~PRsYYRCT~s~gC~arKqVQr~~dD~~i~~ttY~G~HnH 217 (498)
.+++.|.|-|... +. ...-||.||+|... +.+. ...+.+.|-|.=.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~------~~~~---~~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT------DIYK---DKESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC------CCCC---cccEEEEEEhhhcCCc
Confidence 5678999988652 22 33448999999542 1111 0012577777766666
No 8
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=6.72 E-value=63 Score=32.38 Aligned_cols=11 Identities=45% Similarity=1.193 Sum_probs=9.0
Q ss_pred CCccccccccc
Q 010903 161 DGCQWRKYGQK 171 (498)
Q Consensus 161 DGy~WRKYGQK 171 (498)
=|++||.||.+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 57899999864
No 9
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=6.44 E-value=63 Score=32.40 Aligned_cols=12 Identities=42% Similarity=0.991 Sum_probs=9.5
Q ss_pred CCCccccccccc
Q 010903 160 NDGCQWRKYGQK 171 (498)
Q Consensus 160 ~DGy~WRKYGQK 171 (498)
-=|++||.+|.+
T Consensus 116 vYG~QwR~~~~~ 127 (295)
T 3ed7_A 116 VYGFQWRHFGAE 127 (295)
T ss_dssp CTHHHHHHBTCC
T ss_pred chhhhhhccCCc
Confidence 357999999865
No 10
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=5.03 E-value=1.1e+02 Score=24.00 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=6.9
Q ss_pred CCCcEEEEEEccccCCC
Q 010903 202 EDMSILITTYEGTHNHP 218 (498)
Q Consensus 202 dD~~i~~ttY~G~HnH~ 218 (498)
-|+-.+.|+|.+.|.|.
T Consensus 87 Sdpl~L~V~~~~~~~~~ 103 (105)
T 2vsd_A 87 SDPVELVLTIEGRHHHH 103 (105)
T ss_dssp CCCEEECCC--------
T ss_pred CCCEEEEEEEecccccc
Confidence 36777889999998774
Done!