Query 010904
Match_columns 497
No_of_seqs 417 out of 1400
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 16:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.1E-42 7.2E-47 342.1 31.2 406 29-479 22-437 (451)
2 3o7q_A L-fucose-proton symport 100.0 7.1E-40 2.4E-44 322.7 24.2 368 33-468 24-425 (438)
3 4gc0_A D-xylose-proton symport 100.0 1.2E-38 4E-43 318.7 17.0 433 30-487 7-473 (491)
4 2gfp_A EMRD, multidrug resista 100.0 4E-37 1.4E-41 296.6 9.5 356 38-461 3-362 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 2.2E-35 7.5E-40 295.0 15.5 378 76-477 50-473 (491)
6 2cfq_A Lactose permease; trans 100.0 2.2E-32 7.5E-37 266.9 16.4 360 56-475 29-399 (417)
7 2xut_A Proton/peptide symporte 100.0 1.7E-29 5.8E-34 254.5 12.7 372 86-476 53-503 (524)
8 3o7q_A L-fucose-proton symport 99.5 1.3E-13 4.5E-18 135.0 15.1 172 290-474 30-228 (438)
9 4aps_A DI-OR tripeptide H+ sym 99.5 2.8E-13 9.7E-18 134.7 16.8 181 286-475 13-196 (491)
10 1pw4_A Glycerol-3-phosphate tr 99.5 7.3E-14 2.5E-18 137.3 12.2 178 286-477 28-208 (451)
11 2xut_A Proton/peptide symporte 99.5 5.1E-13 1.7E-17 134.0 15.1 177 285-473 11-196 (524)
12 2gfp_A EMRD, multidrug resista 99.4 4.3E-13 1.5E-17 128.4 8.3 167 290-472 4-171 (375)
13 2cfq_A Lactose permease; trans 99.3 3.2E-13 1.1E-17 131.3 4.4 147 86-237 258-406 (417)
14 4gc0_A D-xylose-proton symport 99.2 5.5E-11 1.9E-15 118.1 10.8 152 86-237 311-469 (491)
15 3mkt_A Multi antimicrobial ext 44.0 2E+02 0.007 26.8 19.7 28 167-194 146-173 (460)
16 2g9p_A Antimicrobial peptide l 36.2 4.4 0.00015 19.6 -0.8 14 106-119 2-15 (26)
17 2jln_A MHP1; hydantoin, transp 23.6 4.9E+02 0.017 24.9 11.4 52 174-225 20-74 (501)
18 2rdd_B UPF0092 membrane protei 23.2 89 0.003 17.5 3.0 12 471-482 16-27 (37)
19 4dve_A Biotin transporter BIOY 21.9 1.3E+02 0.0046 24.6 5.1 25 93-117 99-123 (198)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.1e-42 Score=342.08 Aligned_cols=406 Identities=22% Similarity=0.384 Sum_probs=331.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 29 LIFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
.++.++..+..++++.+..+++...+++..|.+.+++ ++ ..+.|++.+++.++..++++++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s-------~~~~g~~~~~~~~~~~~~~~~~G 83 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-----------FS-------RGDLGFALSGISIAYGFSKFIMG 83 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-----------TC-------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cc-------HhHHHHHHHHHHHHHHHHHHhHH
Confidence 4566778888888899999999889999999888841 33 88999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHH
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGL----AYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMG 184 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 184 (497)
+++||+|||++++++.++.+++.+++++ + ++++.++++|+++|++.+...+...+++.|++|+++|+++++
T Consensus 84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 158 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-----SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 158 (451)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-----SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc-----ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHH
Confidence 9999999999999999999999999999 8 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhHh-hcC-cceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCcccccc
Q 010904 185 VWNSHTSIGNIIGSVLASGVL-EFG-WGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEE 262 (497)
Q Consensus 185 ~~~~~~~~G~~~g~~~~~~l~-~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (497)
+...+.++|.++||.+++.+. ..| ||+.|++.+++.++..++.++++||+|++....+.++.. ++. +.+.
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~ 230 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-------NDY-PDDY 230 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-------CC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-------ccc-cccc
Confidence 999999999999999999877 578 999999999998888777888888887654332221110 000 0000
Q ss_pred ccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhh
Q 010904 263 VGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFG 342 (497)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 342 (497)
++ +.+++....+...++.+++|.++...+..++.....+....++|.|+++. +|+++.+.+.+.+...++.+++
T Consensus 231 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 231 NE--KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV----KHFALDKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ----------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----SCCCHHHHHHHHHHHHHHHHHH
T ss_pred hh--hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00011111222357788999999999999999999999999999999997 7999999999999999999999
Q ss_pred hhhhHHhHHhh--hhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccc
Q 010904 343 GILAGLISDMI--EARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGN 420 (497)
Q Consensus 343 ~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (497)
.++.+++.||+ ++|+.+..+..+......++....+..+.+......++.|++.+...+.......+.+|+
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------- 377 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------- 377 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------
Confidence 99999999999 999888777766663333333323233566667777888888888888888888888886
Q ss_pred cchhHHHHHHHhhhhhh-hhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHHHHHhhh
Q 010904 421 SRALATVTAIIDGTGSV-GAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLIRIVKAE 479 (497)
Q Consensus 421 ~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (497)
+.+|++.|+.+...++ |..++|.+.|++.+. +++..|++.+++.+++.++.+...+++
T Consensus 378 -~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 378 -KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4459999999999999 999999999999998 999999999888888877766654433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.1e-40 Score=322.71 Aligned_cols=368 Identities=11% Similarity=0.077 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhcccccc
Q 010904 33 QITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGD 112 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d 112 (497)
++..+..+++.++..+++....++..|.+.+++ |++ ..+.|++.+.+.+++.++++++|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s-------~~~~g~~~~~~~~~~~i~~~~~G~l~d 86 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAF----------TLT-------NFQAGLIQSAFYFGYFIIPIPAGILMK 86 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------CCC-------SHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555666666777777677888899999999 888 999999999999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHH
Q 010904 113 TIDLRLFLVFGMMGSGLFTIIF---GLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSH 189 (497)
Q Consensus 113 r~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 189 (497)
|+|||++++++.++.+++.+++ +++ ++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence 9999999999999999999999 777 99999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhHh-hcC--------------------------cceeeehhhHHHHHHHHHHHhh-eecCCcCCCCC
Q 010904 190 TSIGNIIGSVLASGVL-EFG--------------------------WGWSFVLPGFLVIFVGVFVFLF-LVVRPEDLGFE 241 (497)
Q Consensus 190 ~~~G~~~g~~~~~~l~-~~g--------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~p~~~~~~ 241 (497)
.++|.+++|.+++.+. +.+ ||+.|++.+++.++..++.++. .||++++.+
T Consensus 162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-- 239 (438)
T 3o7q_A 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-- 239 (438)
T ss_dssp HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC--
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--
Confidence 9999999999999987 432 9999988887777665544332 222222110
Q ss_pred CChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcc
Q 010904 242 LPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFY-IRHTAVAG 320 (497)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 320 (497)
++ +++.+.+..+++++++|.++...+..++..........++|.| +++.
T Consensus 240 -~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 289 (438)
T 3o7q_A 240 -SD-------------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI---- 289 (438)
T ss_dssp -CC-------------------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred -cc-------------------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence 00 0122244567889999999999999999888888999999999 8887
Q ss_pred cCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcc
Q 010904 321 VHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPY 400 (497)
Q Consensus 321 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 400 (497)
+|+++.+++.+.....++.+++.++.++++||+++|+.+..+..+..+..+++... .+. .....+++.|++.+..+
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~~~~ 365 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---GGH-VGLIALTLCSAFMSIQY 365 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---CHH-HHHHHHHHHHHHHTTHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---CCc-HHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988887777766655542 233 33445577888888888
Q ss_pred hhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-C-chHHHHHHHHHHHHH
Q 010904 401 SLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-G-WNSVFFMLIVSILFA 468 (497)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-g-~~~~~~~~~~~~~~~ 468 (497)
+.......+.+|++ ++++.++.. ...+++.++|.+.|++.|. | ++..|.+.+++.++.
T Consensus 366 ~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD---------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHSSCGGG---------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc---------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88888888888753 366777666 6779999999999999998 7 998888765554443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.2e-38 Score=318.75 Aligned_cols=433 Identities=12% Similarity=0.054 Sum_probs=302.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCC-CCCCCCCccchhhHHHHHHHHHHHHhhcc
Q 010904 30 IFHQITALVITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAP-FNGPDGTHRLGELDLAFLTSYSVGMYFAG 108 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g 108 (497)
+++.+.+.+++.++.+..++|...++..+|.+.+++ +.++ .+.+.+..+.|++.+++.+|..++++++|
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G 76 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVF----------VAPQNLSESAANSLLGFCVASALIGCIIGGALGG 76 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHH----------TGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888888899888888888888766 2110 01011156679999999999999999999
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHhhhhh-------------hhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccC
Q 010904 109 HVGDTIDLRLFLVFGMMGSGLFTIIFGLAYW-------------LSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFG 175 (497)
Q Consensus 109 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 175 (497)
+++||+|||++++++.+++.+++++++++.. ...+|++.++++|+++|++.|...+....+++|+.|
T Consensus 77 ~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p 156 (491)
T 4gc0_A 77 YCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP 156 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999984210 012899999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHhhhHHHHHHHHhhhHhh---------cCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhh
Q 010904 176 KAKRGLIMGVWNSHTSIGNIIGSVLASGVLE---------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKE 246 (497)
Q Consensus 176 ~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 246 (497)
+++|++..++.+.+..+|.++++.++..+.. .+||+.+.+..+..++. ++..+++||+|++...+.+.++
T Consensus 157 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 157 AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHH
T ss_pred HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhH
Confidence 9999999999999999999999988877652 35888888877776665 5667789999998766655555
Q ss_pred hhhhhh-ccCCccccccccccccCCCCchhhhhHHHHhhCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCC
Q 010904 247 VELMNV-ENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVAPFAFCLFFSKL-VAYTFLYWLPFYIRHTAVAGVHLS 324 (497)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~s 324 (497)
++...+ ...++...+.....+......++.......++.++.........+... ....+..+.|.+.++ .+.+
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 310 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-----LGAS 310 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----SSCC
T ss_pred HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-----cCCC
Confidence 422111 111111000000000000111122222334444444444433333333 344555666666666 5788
Q ss_pred cchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHh-hhccCcchh
Q 010904 325 HKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIPALVLYRTY-GSISMITNIPLMFLSG-LLVNGPYSL 402 (497)
Q Consensus 325 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~~~~~~~ 402 (497)
...........++..+++.++++++.||+|||+.+..+.....++.+.+.... .....+...+..++.. ....+..+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence 77777888888899999999999999999999999888877777665554321 1222222222222222 222333455
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhcccceeecc-------CchHHHHHHHHHHHHHHHHHHHH
Q 010904 403 ITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYISTR-------GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-------g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
...+.+|.+|++ .|+++.|+.+..+++++.+++.+.+.+.+. ++...|++++++++++.++.+++
T Consensus 391 ~~~~~~E~fPt~--------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 462 (491)
T 4gc0_A 391 CWVLLSEIFPNA--------IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462 (491)
T ss_dssp HHHHHHHSSCTT--------THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence 667788888874 449999999999999999999888776553 45567888888888887766655
Q ss_pred HhhhhhhhhhcC
Q 010904 476 VKAEIREKLNEG 487 (497)
Q Consensus 476 ~~~~~~~~~~~~ 487 (497)
. +|+|+|+.||
T Consensus 463 ~-PETkg~tLee 473 (491)
T 4gc0_A 463 V-PETKGKTLEE 473 (491)
T ss_dssp C-CCCTTCCHHH
T ss_pred e-cCCCCCCHHH
Confidence 4 4777776554
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=4e-37 Score=296.63 Aligned_cols=356 Identities=12% Similarity=0.086 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHhcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCc
Q 010904 38 VITFFAYASFHASRKPPSIVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLR 117 (497)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr 117 (497)
.++++..+....+...+.+..|.+.+++ |++ ..+.+++.+.+.++..++++++|+++||+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s-------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r 65 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL----------NVR-------EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR 65 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS----------SST-------THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3445555666666666778889999999 888 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchhhhhhhhcccCcccchhhHHHHHHHhhhHHHHH
Q 010904 118 LFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPCVVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIG 197 (497)
Q Consensus 118 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 197 (497)
+++..+.++.+++.++.+++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 140 (375)
T 2gfp_A 66 PVILVGMSIFMLATLVAVTT-----SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLA 140 (375)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHh-hcCcceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhh
Q 010904 198 SVLASGVL-EFGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQA 276 (497)
Q Consensus 198 ~~~~~~l~-~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (497)
|.+++.+. ..|||+.|++.+++.++..+...+.+||++++.+.++ +..
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~ 189 (375)
T 2gfp_A 141 PLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT-------------------------------RLL 189 (375)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC-------------------------------CTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc-------------------------------cHH
Confidence 99999988 4699999999988887776656667777654321110 011
Q ss_pred hhHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhh
Q 010904 277 IGFLEAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEAR 356 (497)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 356 (497)
..+++.+|+|.++...+..++..........+.|.|+++. +|.++.+.+.......++.+++.++.+++.||++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV----LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH----HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345778889999998888888888889999999999987 789999999999999999999999999999999873
Q ss_pred hHHHHHHHH-HHHHHHHHHh-hccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhh
Q 010904 357 AVTSVAFLL-LSIPALVLYR-TYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGT 434 (497)
Q Consensus 357 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 434 (497)
. ..+... ...+...+.. .....+.+......++.|++.+...+.......+..| ++ +|++.|+.+..
T Consensus 266 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~--------~g~~~g~~~~~ 334 (375)
T 2gfp_A 266 M--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL--------AGTAGALVGGL 334 (375)
T ss_dssp H--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH--------HHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc--------cchHHHHHHHH
Confidence 2 222222 1111111111 1111244555566777888888888888888888876 33 39999999999
Q ss_pred hhhhhhhhhcccceeecc-CchHHHHHH
Q 010904 435 GSVGAALGPLLAGYISTR-GWNSVFFML 461 (497)
Q Consensus 435 ~~~g~~~~~~~~g~l~~~-g~~~~~~~~ 461 (497)
.++|..++|.+.|.+.+. ++...+.+.
T Consensus 335 ~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 335 QNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999999999877 666666554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.2e-35 Score=295.03 Aligned_cols=378 Identities=13% Similarity=0.057 Sum_probs=271.9
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccc-cCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 010904 76 GWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDT-IDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIF 154 (497)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l 154 (497)
|++ ..+.|++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++ +|++.++++|++
T Consensus 50 ~~s-------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l 117 (491)
T 4aps_A 50 HIT-------RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FGASALFGSIIL 117 (491)
T ss_dssp CSC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CSTTHHHHHHHH
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHH
Confidence 787 9999999999999999999999999999 899999999999999999999998 999999999999
Q ss_pred hhhhhcccchhhhhhhhcccCccc--chhhHHHHHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhhe
Q 010904 155 CGLFQSIGWPCVVAVLGNWFGKAK--RGLIMGVWNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFL 231 (497)
Q Consensus 155 ~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~ 231 (497)
+|++.+...+...++++|++|+++ |+.++++++.+.++|..++|.+++.+.+ .|||+.|++.++..++..++.++..
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988 7788888999999999999999999984 8999999998877766655544443
Q ss_pred ecCCcCCCCCC----Chhhhhhhhh-----------------ccCCccccccccccc----------cCCCCchhhhhHH
Q 010904 232 VVRPEDLGFEL----PGKEVELMNV-----------------ENGDKVENEEVGLLE----------SGSSGSLQAIGFL 280 (497)
Q Consensus 232 ~~~p~~~~~~~----~~~~~~~~~~-----------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 280 (497)
++..++....+ +.++.+...+ ..++...++...... .....+..+....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (491)
T 4aps_A 198 KKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST 277 (491)
T ss_dssp HTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH
Confidence 43222111111 1111100000 000000000000000 0000000000111
Q ss_pred HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHH
Q 010904 281 EAWKLPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTS 360 (497)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~ 360 (497)
+..+....+...+..++..........++|.|.++. .+.+....+.......++.+++.++.+++.||++||+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~ 353 (491)
T 4aps_A 278 EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER----VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS 353 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS----CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc
Confidence 122223345555555555666666778889999987 7788788899999999999999999999999999886543
Q ss_pred -----HHHHHHHHHHHHHHhhc------cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHH
Q 010904 361 -----VAFLLLSIPALVLYRTY------GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTA 429 (497)
Q Consensus 361 -----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 429 (497)
.+..+.+++.+++.... ...+.+...+..++.|++.+...+.......+.+|++.| |++.|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~--------g~~~g 425 (491)
T 4aps_A 354 PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN--------SQMMS 425 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS--------SSSTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH--------HHHHH
Confidence 45555555444433311 123556666777888888888888889999999987543 89999
Q ss_pred HHhhhhhhhhhhhhcccceeeccCchHHHHHHHHHHHHHHHHHHHHHh
Q 010904 430 IIDGTGSVGAALGPLLAGYISTRGWNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 430 ~~~~~~~~g~~~~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+.+...++|..++|.+.+.+.+.++...|...+++.+++.++.+...+
T Consensus 426 ~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 426 MWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888888888777766665543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.98 E-value=2.2e-32 Score=266.91 Aligned_cols=360 Identities=13% Similarity=0.103 Sum_probs=248.8
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHH---
Q 010904 56 IVKSVLGPTFDGSNLRSNDPGWAPFNGPDGTHRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTI--- 132 (497)
Q Consensus 56 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~--- 132 (497)
....++.+++ |++ ..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++..
T Consensus 29 ~~~~~l~~~~----------g~s-------~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~ 91 (417)
T 2cfq_A 29 FFPIWLHDIN----------HIS-------KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp THHHHHHTTT----------CCC-------TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHh----------CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3334466777 787 89999999999999999999999999999999999999887765332
Q ss_pred HHhhhhhhhhhHH-HHHHHHHHHhhhhhcccchhhhhhhhcccCc--ccchhhHHHHHHHhhhHHHHHHHHhhhHhhcCc
Q 010904 133 IFGLAYWLSVHLL-VYFVGVQIFCGLFQSIGWPCVVAVLGNWFGK--AKRGLIMGVWNSHTSIGNIIGSVLASGVLEFGW 209 (497)
Q Consensus 133 ~~~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~gw 209 (497)
...++ +.. ..++..+++.|++.+..++.....+.++.++ ++|+...+.......+|..++|.+++.+.+.+|
T Consensus 92 ~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~ 166 (417)
T 2cfq_A 92 IFIFG-----PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166 (417)
T ss_dssp HHTHH-----HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCS
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 22332 222 1245566777766665555555555555543 456777888888899999999999999988899
Q ss_pred ceeeehhhHHHHHHHHHHHhheecCCcCCCCCCChhhhhhhhhccCCccccccccccccCCCCchhhhhHHHHhhCCchH
Q 010904 210 GWSFVLPGFLVIFVGVFVFLFLVVRPEDLGFELPGKEVELMNVENGDKVENEEVGLLESGSSGSLQAIGFLEAWKLPRVA 289 (497)
Q Consensus 210 r~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (497)
|+.|++.+++.++..+. .+..+|++++... +++. ++ . ++++.....+++++++|.++
T Consensus 167 ~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~--------~~--~---------~~~~~~~~~~~~~~~~~~~~ 223 (417)
T 2cfq_A 167 QFVFWLGSGCALILAVL-LFFAKTDAPSSAT---VANA--------VG--A---------NHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHTTTTTTTTTHHHH-SCSSCCCCSCSSC---SSSS--------SS--S---------CCCCCCHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHHcCcccccccc---cccc--------cc--c---------ccccccHHHHHHHhcCCchh
Confidence 99999888775554333 3333332211100 0000 00 0 00111223466788999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVH---LSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLL 366 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~ 366 (497)
...+..++....+..+..++|.|+.+. ++ .+....+.......++.+++.++.++++||++||+.+..+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 224 FLSLYVIGVSCTYDVFDQQFANFFTSF----FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 877766665556666667789998775 33 23445577778888888999999999999999999888777766
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHH-Hhhhhhhhhhhhhcc
Q 010904 367 SIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAI-IDGTGSVGAALGPLL 445 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~ 445 (497)
++..+.+.. ..+.+...+..++.+++.+...+....+..+..|+ +.+|++.++ ++....+|+.++|.+
T Consensus 300 ~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 300 SVRIIGSSF---ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV--------RFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHTT---CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH--------HHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 665444432 23344444444455555444445556777788776 445999998 488889999999999
Q ss_pred cceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 446 AGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 446 ~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.|++.+. ++...|.+.+++.+++.++.+..
T Consensus 369 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 9999887 88888888888877776655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.7e-29 Score=254.45 Aligned_cols=372 Identities=10% Similarity=0.023 Sum_probs=229.3
Q ss_pred CccchhhHHHHHHHHHHHHhhcccccccc-CCchhhHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHhhhhhcccc
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTI-DLRLFLVFGMMGSGLFTIIFGLAYWLSVH-LLVYFVGVQIFCGLFQSIGW 163 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~ 163 (497)
..+.|++.+.+.++..++++++|+++||+ |||+++.++.++.+++.++++++ + +++.+++.|++.|++.+...
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----EHSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999 99999999999999999999998 8 99999999999999999999
Q ss_pred hhhhhhhhcccCcccchhhHHH---HHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcCCC
Q 010904 164 PCVVAVLGNWFGKAKRGLIMGV---WNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPEDLG 239 (497)
Q Consensus 164 ~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (497)
+...+++.|++|+++|+++.+. +....++|..+||.+++.+.+ .|||+.|++.+++.++..++.++..++.++...
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 9999999999999999877666 899999999999999999884 799999999888876654443332222211111
Q ss_pred CCCChhhh-hhhh-hccCCccccccccc-------------cccCCC---------------CchhhhhHHHH-------
Q 010904 240 FELPGKEV-ELMN-VENGDKVENEEVGL-------------LESGSS---------------GSLQAIGFLEA------- 282 (497)
Q Consensus 240 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~-------------~~~~~~---------------~~~~~~~~~~~------- 282 (497)
......+. +... ..++...+.+.... ...... +.+.+.++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
T 2xut_A 208 EPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287 (524)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC
T ss_pred CCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc
Confidence 00000000 0000 00000000000000 000000 00000011000
Q ss_pred -----hhCCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcccCCCc-chhhHHHhhhhhhhhhhhhhhHHhH--
Q 010904 283 -----WKLPRVAPFAFCLFFSKLVAYT----FLYWLPFYIRHTAVAGVHLSH-KTAGILSTIFDIGGVFGGILAGLIS-- 350 (497)
Q Consensus 283 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~-- 350 (497)
.+.++.+........ ....+. ....++.+..+ .+.+. ...+.+.....++.+++.++.+++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (524)
T 2xut_A 288 PDAAVDGVRSVLRILVLFAL-VTPFWSLFDQKASTWILQAND-----MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYP 361 (524)
T ss_dssp CSSSSTTTTTHHHHHHHHTT-SHHHHTTTSSTTTHHHHHHHH-----SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC---
T ss_pred cHhHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhhHHhHHh-----cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHH
Confidence 111222222111111 111111 11223333332 12221 2456666666667777777766654
Q ss_pred --Hhhhh----hhHHHHHHHHHHHHHHHHHhhc------cCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccc
Q 010904 351 --DMIEA----RAVTSVAFLLLSIPALVLYRTY------GSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIK 418 (497)
Q Consensus 351 --dr~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (497)
||.++ ++.+..+..+.+++.+++.... ...+.+...+..++.|++.+...+.......+..|++.|
T Consensus 362 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~-- 439 (524)
T 2xut_A 362 AIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK-- 439 (524)
T ss_dssp ---------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC--
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH--
Confidence 44433 2344555555555554443321 123455666777888888888888888888898887543
Q ss_pred cccchhHHHHHHHhhhhhhhhhhhhcccceeecc---Cc---------hHHHHHHHHHHHHHHHHHHHHH
Q 010904 419 GNSRALATVTAIIDGTGSVGAALGPLLAGYISTR---GW---------NSVFFMLIVSILFAGMFLIRIV 476 (497)
Q Consensus 419 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---g~---------~~~~~~~~~~~~~~~~~~~~~~ 476 (497)
|+++|+.+...++|+.++|.+.|.+.+. +| ...|++.+++.+++.++.+...
T Consensus 440 ------g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 440 ------GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp ------TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 22 2236666666666665554443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.52 E-value=1.3e-13 Score=134.97 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
...+..++............|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQA-----FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33444555555555666677776665 7999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccccee
Q 010904 370 ALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 449 (497)
.++........+.+..++..++.|++.+...+....++.+.+|+++ ++.+.++.+....+|..++|.+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS--------GHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT--------HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776332224677888888899999999999999999999998744 49999999999999999999999998
Q ss_pred e-cc-C-------------------------chHHHHHHHHHHHHHHHHHHH
Q 010904 450 S-TR-G-------------------------WNSVFFMLIVSILFAGMFLIR 474 (497)
Q Consensus 450 ~-~~-g-------------------------~~~~~~~~~~~~~~~~~~~~~ 474 (497)
. +. + |+..|++.+++.++..++...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8 55 3 788887777766665555444
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.51 E-value=2.8e-13 Score=134.73 Aligned_cols=181 Identities=16% Similarity=0.205 Sum_probs=151.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHh-hhhhhHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHT-AVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDM-IEARAVTSVAF 363 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~ 363 (497)
+.++...+..++..+.++....+++.|+++. ..+++|.+..+.+++.+...++..++.++.|+++|| +|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3566777777888888888889999999873 112259999999999999999999999999999999 89999999998
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhh
Q 010904 364 LLLSIPALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGP 443 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 443 (497)
.+..++.++... ..+.+..++..++.|++.+...+.....+.+.+|+++ +.++.+.++.+...++|..++|
T Consensus 93 ~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~r~~~~~~~~~~~~~g~~~~~ 163 (491)
T 4aps_A 93 VLIMLGHIVLAL---PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD------RRRDAGFSIFVFGINLGAFIAP 163 (491)
T ss_dssp HHHHHHHHHHHS---CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT------THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc------ccceeeehHHHHHHHHHHHHHH
Confidence 888887776654 3566777788888999999999999999999988754 4458899999999999999999
Q ss_pred cccceeecc-CchHHHHHHHHHHHHHHHHHHHH
Q 010904 444 LLAGYISTR-GWNSVFFMLIVSILFAGMFLIRI 475 (497)
Q Consensus 444 ~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 475 (497)
.+.+.+.+. +|+..|++.++..+++.+.....
T Consensus 164 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999886 99999999877777766655544
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.50 E-value=7.3e-14 Score=137.32 Aligned_cols=178 Identities=16% Similarity=0.229 Sum_probs=143.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHH
Q 010904 286 PRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLL 365 (497)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~ 365 (497)
+.++...+..++...........+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+.+..+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-----G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-----T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344555555555555555566777766665 7 8999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhcc-CchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhc
Q 010904 366 LSIPALVLYRTYG-SISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPL 444 (497)
Q Consensus 366 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 444 (497)
.+++.++..+... ..+.+.+++..++.|++.+...+...+++.+.+|++ ++++++|+.+....+|..++|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--------~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK--------ERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT--------HHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 8888777665111 245667778888999999989999999999999864 4499999999999999999999
Q ss_pred ccceeecc-C-chHHHHHHHHHHHHHHHHHHHHHh
Q 010904 445 LAGYISTR-G-WNSVFFMLIVSILFAGMFLIRIVK 477 (497)
Q Consensus 445 ~~g~l~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~ 477 (497)
+.+++.+. + |+..|++.+++.++..++.....+
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99987776 7 999999988887776665554433
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.46 E-value=5.1e-13 Score=134.03 Aligned_cols=177 Identities=16% Similarity=0.101 Sum_probs=146.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC------CCcchhhHHHhhhhhhhhhhhhhhHHhHHhh-hhhh
Q 010904 285 LPRVAPFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVH------LSHKTAGILSTIFDIGGVFGGILAGLISDMI-EARA 357 (497)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~ 357 (497)
++.+|...+..++.....+....+++.|+++. +| +++.+.+++.+...++.+++.++.|+++||+ |||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTA----LLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 35677888888888888889999999999887 78 9999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhh
Q 010904 358 VTSVAFLLLSIPALVLYRTYGSI-SMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGS 436 (497)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 436 (497)
.+..+..+..++.++.... . +.+..++..++.|++.+...+...+.+.+.+|+++| ......+++.+...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-----~~~~~~~~~~~~~~~ 158 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIF---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-----SLAQKAFDMFYFTIN 158 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT-----THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch-----HHHHHHHHHHHHHHH
Confidence 9998888888877766553 3 667777788889999999999999999999987553 112334455888999
Q ss_pred hhhhhhhcccceeecc-CchHHHHHHHHHHHHHHHHHH
Q 010904 437 VGAALGPLLAGYISTR-GWNSVFFMLIVSILFAGMFLI 473 (497)
Q Consensus 437 ~g~~~~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~ 473 (497)
+|..++|.+.+++.+. +|+..|++.+++.+++.+...
T Consensus 159 ~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 999999988877766655443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.39 E-value=4.3e-13 Score=128.40 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhhHHHhhhhhhhhhhhhhhHHhHHhhhhhhHHHHHHHHHHHH
Q 010904 290 PFAFCLFFSKLVAYTFLYWLPFYIRHTAVAGVHLSHKTAGILSTIFDIGGVFGGILAGLISDMIEARAVTSVAFLLLSIP 369 (497)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 369 (497)
...+..++...........+|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-----LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 44555566666666677777877666 6999999999999999999999999999999999999999988888888
Q ss_pred HHHHHhhccCchhHHHHHHHHHHhhhccCcchhHHHHHHhhcccccccccccchhHHHHHHHhhhhhhhhhhhhccccee
Q 010904 370 ALVLYRTYGSISMITNIPLMFLSGLLVNGPYSLITTAVAADLGTQDLIKGNSRALATVTAIIDGTGSVGAALGPLLAGYI 449 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 449 (497)
.++.... ++.+..++..++.|++.+...+.....+.+..|+++| ++++++.+....+|..++|.+.+++
T Consensus 79 ~~~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 79 TLVAVTT---SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQL--------RHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC--------CSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7776653 4677777888889999988888888999998886543 8899999999999999999999999
Q ss_pred ecc-CchHHHHHHHHHHHHHHHHH
Q 010904 450 STR-GWNSVFFMLIVSILFAGMFL 472 (497)
Q Consensus 450 ~~~-g~~~~~~~~~~~~~~~~~~~ 472 (497)
.+. +|+..|++.++..++..+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 148 DTMWNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhccHHHHHHHHHHHHHHHHHHH
Confidence 887 99999988877776665533
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.35 E-value=3.2e-13 Score=131.27 Aligned_cols=147 Identities=15% Similarity=0.048 Sum_probs=123.3
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
....++..+...++..++.++.|++.||+|||+++..+.++.+++.++.++. ++.+.+++..++.+++.+...+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----CSHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888889999999999999999999999998888887777776 77888888888888887777777
Q ss_pred hhhhhhcccCcccchhhHHH-HHHHhhhHHHHHHHHhhhHhh-cCcceeeehhhHHHHHHHHHHHhheecCCcC
Q 010904 166 VVAVLGNWFGKAKRGLIMGV-WNSHTSIGNIIGSVLASGVLE-FGWGWSFVLPGFLVIFVGVFVFLFLVVRPED 237 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~-~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 237 (497)
...++.|.+|++.|+++.++ ++....+|..++|.+++.+.+ .|++..|.+.+++.++..++.++..||+++.
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 78899999999999999999 488888999999999998884 6888899988888887766666666654443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.19 E-value=5.5e-11 Score=118.13 Aligned_cols=152 Identities=15% Similarity=0.165 Sum_probs=113.8
Q ss_pred CccchhhHHHHHHHHHHHHhhccccccccCCchhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhcccchh
Q 010904 86 THRLGELDLAFLTSYSVGMYFAGHVGDTIDLRLFLVFGMMGSGLFTIIFGLAYWLSVHLLVYFVGVQIFCGLFQSIGWPC 165 (497)
Q Consensus 86 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 165 (497)
............+...++.++.+++.||+|||+.++.+....+++.+..+.......++...++..-+..+.......+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHH
Confidence 55566666777788889999999999999999999999998888877766542222233333322222222222334467
Q ss_pred hhhhhhcccCcccchhhHHHHHHHhhhHHHHHHHHhhhHhh-------cCcceeeehhhHHHHHHHHHHHhheecCCcC
Q 010904 166 VVAVLGNWFGKAKRGLIMGVWNSHTSIGNIIGSVLASGVLE-------FGWGWSFVLPGFLVIFVGVFVFLFLVVRPED 237 (497)
Q Consensus 166 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-------~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~ 237 (497)
...+.+|.+|.+.|++++|+......+|..+++.+...+.+ .++.+.|++.++++++..+..++++||+...
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 78899999999999999999999999999988877665532 4677788999999999888888999987643
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=43.99 E-value=2e+02 Score=26.75 Aligned_cols=28 Identities=11% Similarity=-0.146 Sum_probs=15.3
Q ss_pred hhhhhcccCcccchhhHHHHHHHhhhHH
Q 010904 167 VAVLGNWFGKAKRGLIMGVWNSHTSIGN 194 (497)
Q Consensus 167 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 194 (497)
.......+..++|.+...+......+-.
T Consensus 146 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (460)
T 3mkt_A 146 FQALRSFTDGMSLTKPAMVIGFIGLLLN 173 (460)
T ss_dssp HHHHTTTTCTTSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3444555656666666666555544433
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=36.16 E-value=4.4 Score=19.65 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=10.4
Q ss_pred hccccccccCCchh
Q 010904 106 FAGHVGDTIDLRLF 119 (497)
Q Consensus 106 ~~g~l~dr~Grr~~ 119 (497)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35778889998854
No 17
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=23.55 E-value=4.9e+02 Score=24.87 Aligned_cols=52 Identities=10% Similarity=-0.121 Sum_probs=24.0
Q ss_pred cCcccc-hhhHHHHHHHhhhHHHHHHH-HhhhHh-hcCcceeeehhhHHHHHHHH
Q 010904 174 FGKAKR-GLIMGVWNSHTSIGNIIGSV-LASGVL-EFGWGWSFVLPGFLVIFVGV 225 (497)
Q Consensus 174 ~~~~~r-~~~~~~~~~~~~~G~~~g~~-~~~~l~-~~gwr~~f~~~~~~~~~~~~ 225 (497)
.|+++| .....+.....+....++.. +++.+. ..+|++.++...+-.++..+
T Consensus 20 vp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~ 74 (501)
T 2jln_A 20 TRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVI 74 (501)
T ss_dssp CCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH
Confidence 455666 34444444444444333333 333332 34566666554444444333
No 18
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.16 E-value=89 Score=17.49 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=4.9
Q ss_pred HHHHHHhhhhhh
Q 010904 471 FLIRIVKAEIRE 482 (497)
Q Consensus 471 ~~~~~~~~~~~~ 482 (497)
++++..++.+++
T Consensus 16 fYFl~iRPQ~Kr 27 (37)
T 2rdd_B 16 FYFMILRPQQKR 27 (37)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHHhhhHHHH
Confidence 334444444433
No 19
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.89 E-value=1.3e+02 Score=24.63 Aligned_cols=25 Identities=4% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhccccccccCCc
Q 010904 93 DLAFLTSYSVGMYFAGHVGDTIDLR 117 (497)
Q Consensus 93 ~s~~~~~~~~~~~~~g~l~dr~Grr 117 (497)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4577888888888899998887644
Done!