BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010906
         (497 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4CSM|A Chain A, Yeast Chorismate Mutase + Tyr + Endooxabicyclic Inhibitor
 pdb|4CSM|B Chain B, Yeast Chorismate Mutase + Tyr + Endooxabicyclic Inhibitor
 pdb|2CSM|A Chain A, Tyr-Bound T-State Of Yeast Chorismate Mutase
          Length = 256

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 238 GLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILV 297
           GLE PNF        + ++ +A  R + FE  D    +P  P  +  +F+  ++   IL 
Sbjct: 49  GLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDE---TPFFPDKIQKSFLPSINYPQILA 105

Query: 298 PPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEI 342
           P +  +     I  +      I  L+ + DG++ +N  S A ++I
Sbjct: 106 PYAPEVNYNDKIKKVYIE--KIIPLISKRDGDDKNNFGSVATRDI 148


>pdb|1CSM|A Chain A, The Crystal Structure Of Allosteric Chorismate Mutase At
           2.2 Angstroms Resolution
 pdb|1CSM|B Chain B, The Crystal Structure Of Allosteric Chorismate Mutase At
           2.2 Angstroms Resolution
          Length = 256

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 238 GLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILV 297
           GLE PNF        + ++ +A  R + FE  D    +P  P  +  +F+  ++   IL 
Sbjct: 49  GLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDE---TPFFPDKIQKSFLPSINYPQILA 105

Query: 298 PPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEI 342
           P +  +     I  +      I  L+ + DG++ +N  S A ++I
Sbjct: 106 PYAPEVNYNDKIKKVYIE--KIIPLISKRDGDDKNNFGSVATRDI 148


>pdb|3CSM|A Chain A, Structure Of Yeast Chorismate Mutase With Bound Trp And An
           Endooxabicyclic Inhibitor
 pdb|3CSM|B Chain B, Structure Of Yeast Chorismate Mutase With Bound Trp And An
           Endooxabicyclic Inhibitor
          Length = 256

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 238 GLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILV 297
           GLE PNF        + ++ +A  R + FE  D    +P  P  +  +F+  ++   IL 
Sbjct: 49  GLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDE---TPFFPDKIQKSFLPSINYPQILA 105

Query: 298 PPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEI 342
           P +  +     I  +      I  L+ + DG++ +N  S A ++I
Sbjct: 106 PYAPEVNYNDKIKKVYIE--KIIPLISKRDGDDKNNFGSVATRDI 148


>pdb|5CSM|A Chain A, Yeast Chorismate Mutase, T226s Mutant, Complex With Trp
          Length = 256

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 238 GLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILV 297
           GLE PNF        + ++ +A  R + FE  D    +P  P  +  +F+  ++   IL 
Sbjct: 49  GLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDE---TPFFPDKIQKSFLPSINYPQILA 105

Query: 298 PPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEI 342
           P +  +     I  +      I  L+ + DG++ +N  S A ++I
Sbjct: 106 PYAPEVNYNDKIKKVYIE--KIIPLISKRDGDDKNNFGSVATRDI 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,813,549
Number of Sequences: 62578
Number of extensions: 469065
Number of successful extensions: 949
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 5
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)