Query 010906
Match_columns 497
No_of_seqs 262 out of 590
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2154 Predicted nucleolar pr 100.0 1.2E-72 2.5E-77 582.3 27.5 357 7-453 135-493 (505)
2 KOG2038 CAATT-binding transcri 100.0 1.1E-47 2.3E-52 413.4 22.8 254 165-441 468-764 (988)
3 PF03914 CBF: CBF/Mak21 family 100.0 3.5E-40 7.6E-45 307.4 13.2 162 222-397 1-164 (164)
4 COG5593 Nucleic-acid-binding p 100.0 1.4E-30 3E-35 273.0 17.0 252 165-451 363-621 (821)
5 COG5117 NOC3 Protein involved 99.8 3.8E-20 8.3E-25 192.3 19.4 205 168-402 406-654 (657)
6 KOG2153 Protein involved in th 99.8 3.4E-19 7.3E-24 191.8 11.3 222 169-467 460-694 (704)
7 KOG2153 Protein involved in th 97.9 2.4E-05 5.2E-10 86.0 8.3 146 228-401 544-700 (704)
8 KOG1058 Vesicle coat complex C 70.4 32 0.00068 40.1 10.4 100 221-323 332-434 (948)
9 PF14500 MMS19_N: Dos2-interac 32.6 5.5E+02 0.012 26.1 11.9 110 206-317 41-156 (262)
10 PF08167 RIX1: rRNA processing 31.2 1.4E+02 0.003 27.9 6.3 36 284-319 111-148 (165)
11 PF12717 Cnd1: non-SMC mitotic 27.1 5.2E+02 0.011 24.1 12.6 121 173-294 29-159 (178)
12 PF10979 DUF2786: Protein of u 24.8 1.4E+02 0.0031 22.1 4.1 35 283-317 3-39 (43)
13 cd00183 TFIIS_I N-terminal dom 23.8 63 0.0014 26.5 2.3 23 380-402 48-70 (76)
14 KOG3050 COP9 signalosome, subu 21.1 2.7E+02 0.0059 28.5 6.4 64 172-238 208-282 (299)
15 PF04118 Dopey_N: Dopey, N-ter 21.0 5.7E+02 0.012 26.8 9.1 42 168-210 53-94 (307)
16 COG1384 LysS Lysyl-tRNA synthe 20.9 1.7E+02 0.0037 32.8 5.5 26 228-253 468-494 (521)
No 1
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-72 Score=582.26 Aligned_cols=357 Identities=36% Similarity=0.599 Sum_probs=311.4
Q ss_pred cCCCccChHHHHHHHHHHHcCCCChhhHHHHHHhhccccCcchhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccchh
Q 010906 7 GNGGKFHSAIYHKLLHSIVHSTESVGSVTDFLASKYFKYIDVRYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRA 86 (497)
Q Consensus 7 ~~~~~f~~~~~~~l~~~l~~~~~~~~~~~~~~~~~y~~y~Dvryy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (497)
...|.||+.+|++++.+|+.+ +-.+..|.+. ..|+|.||.+|....+.+.++..+.+. ++
T Consensus 135 ~~~g~fp~~~f~~l~~~LisS----dv~it~f~e~-~~~t~k~f~~~~~~~~~~~s~~~q~~~-------------Dp-- 194 (505)
T KOG2154|consen 135 AENGGFPNSIFHRLLDALISS----DVDITIFLEN-VGYTDKYFKYFDITLTQVRSVVPQHPT-------------DP-- 194 (505)
T ss_pred ccccCCcHHHHHHHHHHHhcc----cccHHHHHHh-ccchhHHHHHHHHHHHHHHHhccCCCC-------------CC--
Confidence 346779999999999999987 3456777654 789999999999888877776542211 11
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCcccchhHhhhhhhhcccCcchhccCcchhhhhchHHHHHHHH
Q 010906 87 SIELSLRKSYYILSKIPSMEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNSCLQALSAAIISKKM 166 (497)
Q Consensus 87 ~~~~~~~n~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
+.+..|.+.+++.++++-... ....|...+ .++.+...+++
T Consensus 195 --~v~~~N~~~~ls~v~~p~~~~---S~~~~~~~~----------------------------------~p~~~~~~~~~ 235 (505)
T KOG2154|consen 195 --PVIANNELEILSLVSLPLSVS---STSSYVLEP----------------------------------IPKQTENEKQI 235 (505)
T ss_pred --chhhcchHHHhhhccCCCCcc---cHhhhcccc----------------------------------CccccccHHHH
Confidence 467789999999999875211 112233321 11112223678
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhcccCChhhHhhHHHHHhh-cCCchHHHHHHHHHHHHHhcCCCcchHH
Q 010906 167 KSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYD-IGGVVSVMALSSLFILMTQHGLEYPNFY 245 (497)
Q Consensus 167 k~~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~np~ll~DFlt~~~d-~gg~isllAL~~LF~L~~~~nld~~rFY 245 (497)
++.|+.+|+++++..+|.++++++|.+++++|+||+..|..++||||++|| .||++||+||+|||+||++||++||.||
T Consensus 236 ~k~f~~~Wls~l~~~ls~~lykkil~vih~rvip~l~~P~kl~DFLtdsyd~~~g~vslLALngLF~Lm~khNleYP~FY 315 (505)
T KOG2154|consen 236 RKSFQNMWLSSLNGELSLKLYKKILLVIHKRVIPHLISPTKLMDFLTDSYDDIGGVVSLLALNGLFILMTKHNLEYPDFY 315 (505)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHhccCCchhHHHHhHHHHHHHHcCCCCchHH
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHhhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhCccccccccc
Q 010906 246 EKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHR 325 (497)
Q Consensus 246 ~~LY~LLdp~l~~s~~ra~fl~LL~~~Lks~~lp~~rVAAFiKRLlqlaL~~pp~~~l~iL~lI~nLLkrhP~l~~Ll~~ 325 (497)
.+||+||+|++||.+||+|||+|+|.||+|+|||+++||||+|||+|+||.+||.+++.+|+||+||++|||+|+.|+|+
T Consensus 316 ~KLY~Ll~Pslfh~KyRarff~L~D~FLSSTHLpa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr 395 (505)
T KOG2154|consen 316 EKLYALLNPSLFHVKYRARFFRLADLFLSSTHLPAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHR 395 (505)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcccHHHHHHHhhccChHHHHHHHHhhccccc
Q 010906 326 EDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTV 405 (497)
Q Consensus 326 ~~~~~~~~~~~~~eg~~~d~~~~~~~~~~~~~~d~Ydp~~~DP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~l~~g~~~ 405 (497)
+...+ ...||||+++.||..++|++|+||||.+||.||||+|+..|+.+.+++++
T Consensus 396 ~~~~~-------------------------~~~Dpfd~~EtDP~ks~ALeSSLWEL~~Lq~Hy~p~Va~~A~~~~q~~~k 450 (505)
T KOG2154|consen 396 SHALS-------------------------LYDDPFDNDETDPKKSGALESSLWELELLQTHYHPEVAKAASFFNQSLYK 450 (505)
T ss_pred ccccc-------------------------CCCCCCCCCCCChhhhhhHHHHHHHHHHHHHhhcHHHHHHHHHHhccCcc
Confidence 87522 24599999999999999999999999999999999999999999999886
Q ss_pred cccccccccCcCCCCcHHHHHHHHHhcccC-CCCcccccCCCccccCCC
Q 010906 406 RAKTTEINVKDFCSGSYATIFGEEIRRRVK-QVPLAFYKTTPTSLFSDS 453 (497)
Q Consensus 406 ~~~~~~y~~~dfld~s~~~~ld~e~~k~~k-~~p~~~~~~~p~~lf~~~ 453 (497)
++|+++|++|++|..++|+|++|+.| .+|+++.+ ++++++..
T Consensus 451 ----~ef~~ed~ld~~y~~l~d~el~~kgk~~p~lefe~--~t~~~g~~ 493 (505)
T KOG2154|consen 451 ----PEFGLEDGLDSKYSVLQDGELSRKGKRFPPLEFER--RTGLGGRF 493 (505)
T ss_pred ----ccccCcchhhhhhHHhhcchhhcccCCCCCccccc--ccccCCch
Confidence 58999999999999999999999988 66666665 68888764
No 2
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=100.00 E-value=1.1e-47 Score=413.43 Aligned_cols=254 Identities=26% Similarity=0.367 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHhccCCCC-----hhHHHHHHHHhhhhhhcccCChhhHhhHHHHHhhcCCchHHHHHHHHHHHHHhcCC
Q 010906 165 KMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGL 239 (497)
Q Consensus 165 ~~k~~~~~awL~~L~~~l~-----~~l~k~vL~~L~k~i~pHl~np~ll~DFlt~~~d~gg~isllAL~~LF~L~~~~nl 239 (497)
+..+++.+|.|+|+|||+| .+.+..++..|++ +.|.+| |+ +|||||++|||++....+
T Consensus 468 e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFk--l~HssN------FN---------TsVQaLmLlfQvs~~~~~ 530 (988)
T KOG2038|consen 468 ELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFK--LTHSSN------FN---------TSVQALMLLFQVSKKNDY 530 (988)
T ss_pred hhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHH--HHhhcc------cc---------hhHHHHHHHHHHHHhhhh
Confidence 5688999999999999987 4689999999999 999999 98 599999999999999999
Q ss_pred CcchHHHHHHH-hhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhCcc
Q 010906 240 EYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPS 318 (497)
Q Consensus 240 d~~rFY~~LY~-LLdp~l~~s~~ra~fl~LL~~~Lks~~lp~~rVAAFiKRLlqlaL~~pp~~~l~iL~lI~nLLkrhP~ 318 (497)
.++|||++||+ ||||+++.++++++||+||+++|+.|. ++.||+||||||+|||++.+|+++||+|.++++|++..|.
T Consensus 531 vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~-ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Karp~ 609 (988)
T KOG2038|consen 531 VSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDI-NIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKARPT 609 (988)
T ss_pred hHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHhcch
Confidence 99999999999 999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCC--------CCc--------hhHHHHHH----------h----hhhhc------c-cCCCCCCCCC
Q 010906 319 INCLLHREDGNETHN--------DDS--------KAEKEIVD----------A----ATVAN------I-SSIKPGIDHF 361 (497)
Q Consensus 319 l~~Ll~~~~~~~~~~--------~~~--------~~eg~~~d----------~----~~~~~------~-~~~~~~~d~Y 361 (497)
++.|+.+.+..+.++ ++. +.+|..++ + ...+. . -.++...++|
T Consensus 610 l~~lv~~~~~~D~e~dv~~~~e~DD~deek~vd~Dke~~~vdk~~~e~~~~e~ds~s~k~E~~~~~~~d~~~~~~~~~~Y 689 (988)
T KOG2038|consen 610 LRKLVVNSEDIDPEEDVVAQMENDDVDEEKKVDLDKEGKEVDKNGVEEEVEEEDSVSEKKEDLDKKKVDPIGARGAKTPY 689 (988)
T ss_pred HHHHhhCCcccChhhhhhhhhcccccchhhhccccccceeecccccccccccccccccchhhhhhhhccccccccCCCCC
Confidence 999987655422211 011 11111110 0 00000 0 0134456799
Q ss_pred CCCCCCCcCCCCCcccHHHHHHHhhccChHHHHHHHHhhccccccccccccccCcCCCCcHHHHHHHHHhcccCCCCccc
Q 010906 362 DDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAF 441 (497)
Q Consensus 362 dp~~~DP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~l~~g~~~~~~~~~y~~~dfld~s~~~~ld~e~~k~~k~~p~~~ 441 (497)
||.+|||.||||..||||||..|.+||||+|+.||+.|.+|..+ .|+++|+.|+|+++||||++.|.+|++..+.
T Consensus 690 D~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~~i-----~y~g~~L~dfTL~~FLDrF~yRnPK~~t~~~ 764 (988)
T KOG2038|consen 690 DPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGEEI-----QYGGPPLNDFTLMAFLDRFAYRNPKQVTKAR 764 (988)
T ss_pred CcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCcee-----ecCCCchhHHHHHHHHHHHHhcCcccccccC
Confidence 99999999999999999999999999999999999999999987 5999999999999999999999999887655
No 3
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=100.00 E-value=3.5e-40 Score=307.37 Aligned_cols=162 Identities=41% Similarity=0.702 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHHHHhcCCCcchHHHHHHHhh-CcCcccchhH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCCh
Q 010906 222 VSVMALSSLFILMTQHGLEYPNFYEKLYALL-VPSIFMAKHR-AKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPP 299 (497)
Q Consensus 222 isllAL~~LF~L~~~~nld~~rFY~~LY~LL-dp~l~~s~~r-a~fl~LL~~~Lks~~lp~~rVAAFiKRLlqlaL~~pp 299 (497)
++|+||.++|+|++++|+|+++||++||++| +|..++++++ .+||++|+.+|+++++|..||+||||||+|+|+++||
T Consensus 1 ~~i~al~~l~~l~~~~n~d~~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~ 80 (164)
T PF03914_consen 1 TCIQALFLLFQLLSGQNIDLDRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPP 80 (164)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCH
Confidence 5899999999999999999999999999966 9999998865 5599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcccHH
Q 010906 300 SGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLW 379 (497)
Q Consensus 300 ~~~l~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~eg~~~d~~~~~~~~~~~~~~d~Ydp~~~DP~~~nA~~SsLW 379 (497)
++++++|.+|++|+++||.|+.|+++++...+ .+.+++++ .....++|+|+++||++|||..|+||
T Consensus 81 ~~~~~~L~~i~~ll~~~p~l~~ll~~~~~~~~--~~~~~~~~------------~~~~~~~Y~p~~~dP~~~~a~~s~lW 146 (164)
T PF03914_consen 81 SFALAILALIRKLLKRHPNLKSLLDNEEKKAD--SGSEEEDE------------EDKSEDKYDPEKRDPEFSNALASSLW 146 (164)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHhcCCccccc--cchhhccc------------ccccccccCcCCCCHhHcCCchhHHH
Confidence 99999999999999999999999988775321 01111111 12456799999999999999999999
Q ss_pred HHHHHhhccChHHHHHHH
Q 010906 380 EIDTLRHHYCPPVSRFVL 397 (497)
Q Consensus 380 EL~~L~~HyHPsVa~~A~ 397 (497)
||.+|++||||+|+++|+
T Consensus 147 EL~lL~~H~hP~V~~~A~ 164 (164)
T PF03914_consen 147 ELNLLRNHYHPSVRQFAR 164 (164)
T ss_pred HHHHHHHCCCcHHHHHhC
Confidence 999999999999999985
No 4
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-30 Score=272.95 Aligned_cols=252 Identities=21% Similarity=0.196 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHhccCCCC-----hhHHHHHHHHhhhhhhcccCChhhHhhHHHHHhhcCCchHHHHHHHHHHHHHhcCC
Q 010906 165 KMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGL 239 (497)
Q Consensus 165 ~~k~~~~~awL~~L~~~l~-----~~l~k~vL~~L~k~i~pHl~np~ll~DFlt~~~d~gg~isllAL~~LF~L~~~~nl 239 (497)
+..+.+.++.|+++||+.| ...++.++.+|++ +.|-.+ |+ +++|||++++|..-..-+
T Consensus 363 eknS~~~savLtG~nRa~pfa~l~~~~~~~Hm~tlfk--ith~~~------fn---------ts~qalmli~q~~~~~~l 425 (821)
T COG5593 363 EKNSFYGSAVLTGCNRAGPFALLFRNAVKSHMMTLFK--ITHEFL------FN---------TSEQALMLIDQEFYRFLL 425 (821)
T ss_pred hhhhHHHHHHHhcccccCchhhhhHHHHHHHHHHHHh--hhhhhh------hh---------HHHHHHHHHHHHHHHHhh
Confidence 4467889999999999854 6889999999999 999988 88 599999999999999999
Q ss_pred CcchHHHHHHH-hhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhCc
Q 010906 240 EYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRHP 317 (497)
Q Consensus 240 d~~rFY~~LY~-LLdp~l~~s~~ra~fl~LL~~~Lks~~lp~~rVAAFiKRLlqlaL~-~pp~~~l~iL~lI~nLLkrhP 317 (497)
+++|||+.||. |+||.+..+++++.+++|++.+|+.+. ++.||-||+||++|+|-+ ..+++.-+....+.+|-+.-|
T Consensus 426 ~SdryY~~lYesl~dprls~ssKqgiylnllykSL~vd~-nV~rv~af~kr~lQv~S~w~~~p~~tg~f~~l~ql~~a~~ 504 (821)
T COG5593 426 DSDRYYTPLYESLIDPRLSESSKQGIYLNLLYKSLRVDT-NVHRVDAFRKRALQVISGWMVLPFDTGDFMSLLQLEMACG 504 (821)
T ss_pred ccchhhhhHHHHHhhhhhhcccccchhHHHHHHHHHHhc-CchHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHhH
Confidence 99999999999 999999999999999999999999998 899999999999999655 567788888888999999999
Q ss_pred cccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcccHHHHHHHhhccChHHHHHHH
Q 010906 318 SINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVL 397 (497)
Q Consensus 318 ~l~~Ll~~~~~~~~~~~~~~~eg~~~d~~~~~~~~~~~~~~d~Ydp~~~DP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~ 397 (497)
.++.|+.+.+-+=+-+.+.+++..+ .......||..+|||.++||..|||||+..+.+||||+|..+|+
T Consensus 505 ~lk~l~tn~~vd~e~e~d~~eeq~d-----------kd~krkeydgrkrdpk~anae~s~lwei~~finhfhptv~~~a~ 573 (821)
T COG5593 505 DLKNLLTNTPVDYEYESDAEEEQGD-----------KDIKRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYAN 573 (821)
T ss_pred HHHHHhcCCCcccccccchhhhhcc-----------cchhhhhccCcccCcccccccccchhhhhhhhhhcccHHHHHHH
Confidence 9999998765421111111111111 11223469999999999999999999999999999999999999
Q ss_pred HhhccccccccccccccCcCCCCcHHHHHHHHHhcccCCCCcccccCCCccccC
Q 010906 398 SLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFS 451 (497)
Q Consensus 398 ~l~~g~~~~~~~~~y~~~dfld~s~~~~ld~e~~k~~k~~p~~~~~~~p~~lf~ 451 (497)
.+..|..+ .--.++.=||+..|||+++.|.+|+-..+-...+-+-||+
T Consensus 574 a~v~ge~~------i~kp~l~l~tl~hfldrf~yr~~kqt~~arg~simqpl~~ 621 (821)
T COG5593 574 AYVTGEEQ------IAKPDLGLFTLSHFLDRFVYRSAKQTNTARGTSIMQPLFS 621 (821)
T ss_pred Hhhhhhhh------hcCCCcchhhHHHHHHHHHhcCcccccccccchhhhhhhc
Confidence 99999854 2334556699999999999999988766655444444554
No 5
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=99.85 E-value=3.8e-20 Score=192.26 Aligned_cols=205 Identities=20% Similarity=0.252 Sum_probs=174.4
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHhhhhhhcccCChhhHhhHHHHHhhc---------CC---chHHHHHHHHHHHHH
Q 010906 168 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---------GG---VVSVMALSSLFILMT 235 (497)
Q Consensus 168 ~~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~np~ll~DFlt~~~d~---------gg---~isllAL~~LF~L~~ 235 (497)
+..+..||.+|+ .--.+++..||+||.| +.||.||++++|||..+|.. |. .-+++|+.+.|.|++
T Consensus 406 kiif~~Yf~vLk-~~~k~lig~vleGl~k--~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S 482 (657)
T COG5117 406 KIIFRLYFMVLK-GDRKDLIGYVLEGLVK--YRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIAS 482 (657)
T ss_pred HHHHHHHHHHHh-cchHHHHHHHHHHHHH--HHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhh
Confidence 345567777776 3346799999999999 99999999999999998853 21 357889999999886
Q ss_pred h-----cCCCcchHHHHHHHhhCcCccc--------------------------chhHHHHHHHHHH-HhcCCCChHHHH
Q 010906 236 Q-----HGLEYPNFYEKLYALLVPSIFM--------------------------AKHRAKFFELLDS-CLRSPLLPAYLA 283 (497)
Q Consensus 236 ~-----~nld~~rFY~~LY~LLdp~l~~--------------------------s~~ra~fl~LL~~-~Lks~~lp~~rV 283 (497)
. .|+|.+.|...||+++.|--+. +-...+++.+++. |.++.+....|.
T Consensus 483 ~t~ygk~n~Dl~~fVd~lY~~v~p~~l~pD~dLn~k~~RL~DP~~~~~~~~VN~tt~~e~LlK~~~~~Ffksk~~~~~r~ 562 (657)
T COG5117 483 ATLYGKENYDLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLFFKSKQPVHRRH 562 (657)
T ss_pred hhhhhhccccHHHHHHHHHHHhCcccCCcchhhhhhhhhhcCCcccccCccccccccHHHHHHHHHHHheeccCchHHHH
Confidence 4 7999999999999976441111 1234677777754 678888788999
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCC
Q 010906 284 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDD 363 (497)
Q Consensus 284 AAFiKRLlqlaL~~pp~~~l~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~eg~~~d~~~~~~~~~~~~~~d~Ydp 363 (497)
.+|-|||+-.|.+.|..++.++|.++..|+.|+|.|..+..++.+ .|.|.|+|
T Consensus 563 ~~f~krl~~c~s~~pe~~~~ail~~~~kl~~rys~~s~l~~sE~~---------------------------ig~g~~~~ 615 (657)
T COG5117 563 VIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEFD---------------------------IGAGNVDS 615 (657)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhhhhccCccCchhh---------------------------cCCccccc
Confidence 999999999999999999999999999999999999999988765 57899999
Q ss_pred CCCCCcCCCCCcccHHHHHHHhhccChHHHHHHHHhhcc
Q 010906 364 EESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLEND 402 (497)
Q Consensus 364 ~~~DP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~l~~g 402 (497)
...||..+|.....|||-.+|.+||+|.|.+-|+.++..
T Consensus 616 ~~~nP~~SN~~tA~l~e~fLlk~hy~P~Vsq~~k~L~~~ 654 (657)
T COG5117 616 IPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLKS 654 (657)
T ss_pred CCCCcccCCchhHHHHHHHHHHhhcCHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999998753
No 6
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.4e-19 Score=191.82 Aligned_cols=222 Identities=18% Similarity=0.204 Sum_probs=175.0
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHhhhhhhcccCChhhHhhHHHHHhhc------CCchHHHHHHHHHHHHHh----cC
Q 010906 169 KFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI------GGVVSVMALSSLFILMTQ----HG 238 (497)
Q Consensus 169 ~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~np~ll~DFlt~~~d~------gg~isllAL~~LF~L~~~----~n 238 (497)
..+.+|+.+|+...-. ++..+|+||++ +.|++|++++.|++...-++ +...+++|++++|.|++. .|
T Consensus 460 iVFtiYFrILkn~~~t-ll~~vlEGlak--f~h~invef~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~ln 536 (704)
T KOG2153|consen 460 IVFTIYFRILKNDRYT-LLGAVLEGLAK--FAHLINVEFLGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKLN 536 (704)
T ss_pred HHHHHHHHHHhcchhh-HHHHHHhhHHH--HhhhccHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeec
Confidence 4455899999876666 99999999999 99999999999998765532 346789999999999985 68
Q ss_pred CCcchHHHHHHHhhCcCcccch--hHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 010906 239 LEYPNFYEKLYALLVPSIFMAK--HRAKFFELLDSCL-RSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRR 315 (497)
Q Consensus 239 ld~~rFY~~LY~LLdp~l~~s~--~ra~fl~LL~~~L-ks~~lp~~rVAAFiKRLlqlaL~~pp~~~l~iL~lI~nLLkr 315 (497)
+|+.+||.+||+++-|--.... --.+.+++++..+ +... |..+|.+|++||+..+++.-+...+ .+...+..
T Consensus 537 iD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~-~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~~~ 611 (704)
T KOG2153|consen 537 IDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRK-PVVNVITKMERLLKCSLHVFFNSKL----ISKYRDIE 611 (704)
T ss_pred cCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhh-hHHHHHHHHHHHHHHHHHHhhcccc----hHHHHHHH
Confidence 9999999999998766222222 2357889998874 5555 8888999999999999998877666 56777788
Q ss_pred CccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcccHHHHHHHhhccChHHHHH
Q 010906 316 HPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRF 395 (497)
Q Consensus 316 hP~l~~Ll~~~~~~~~~~~~~~~eg~~~d~~~~~~~~~~~~~~d~Ydp~~~DP~~~nA~~SsLWEL~~L~~HyHPsVa~~ 395 (497)
.+.|..|+.++ -|+||++....|||+.+++ |||.|+.+
T Consensus 612 fsk~~~~~~~~----------------------------------------~pe~~s~a~~al~e~~l~r--y~~~~~~~ 649 (704)
T KOG2153|consen 612 FSKRLNLLDSE----------------------------------------TPEYCSIASLALFEKLLLR--YHPISRLM 649 (704)
T ss_pred hhhhhhhhhcc----------------------------------------CccccccccHHHHHHHHHh--cchHHHHH
Confidence 88887776432 1999999999999999999 99999999
Q ss_pred HHHhhccccccccccccccCcCCCCcHHHHHHHHHhcccCCCCcccccCCCccccCCCCCCCceeccCCccC
Q 010906 396 VLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWTFICDKTEE 467 (497)
Q Consensus 396 A~~l~~g~~~~~~~~~y~~~dfld~s~~~~ld~e~~k~~k~~p~~~~~~~p~~lf~~~d~~~~~F~~~~~~~ 467 (497)
|..+.-|.+. |. ...++.|+++. ....||.+ +...|+|+|+|+..
T Consensus 650 a~~~~~G~~~------~~---------~~a~~p~~s~~-----------sa~~L~~~-~~~~~~~~P~v~~~ 694 (704)
T KOG2153|consen 650 ASEIAIGVGA------TG---------EGALPPELSNL-----------SAAELFEQ-DLLEMHYNPTVPLS 694 (704)
T ss_pred HHHHhhcCCc------cC---------cCCCCccccCc-----------hHHHHhhh-HHHHhccCCCCCch
Confidence 9999988875 11 22334444443 45678877 88899999999843
No 7
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=2.4e-05 Score=86.04 Aligned_cols=146 Identities=24% Similarity=0.323 Sum_probs=108.6
Q ss_pred HHHHHHHHhcCCC--cchHHHHHHHhhCcCcccch--------hHHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHhhc
Q 010906 228 SSLFILMTQHGLE--YPNFYEKLYALLVPSIFMAK--------HRAKFFELL-DSCLRSPLLPAYLAAAFVKKLSRLSIL 296 (497)
Q Consensus 228 ~~LF~L~~~~nld--~~rFY~~LY~LLdp~l~~s~--------~ra~fl~LL-~~~Lks~~lp~~rVAAFiKRLlqlaL~ 296 (497)
..+|.++-..|++ -+.||. +-+++||-+...+ .+-+++.+. ..+-.+..+..+|..+|-||+.-++.+
T Consensus 544 ~~lY~~l~~~~~~~~~~~~~~-ilr~~d~~~~k~r~~v~~~~~~~~~Ll~~~~h~~~~s~~~s~~~~~~fsk~~~~~~~~ 622 (704)
T KOG2153|consen 544 DHLYKMLFPMNLGPDDDGFAI-ILRLLDPLLIKIRKPVVNVITKMERLLKCSLHVFFNSKLISKYRDIEFSKRLNLLDSE 622 (704)
T ss_pred HHHHHHhcccccCCCcchHHH-HHHHhhHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhhhhhhhhhcc
Confidence 3455555544444 345554 3356666322211 122333332 234456778999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcc
Q 010906 297 VPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRS 376 (497)
Q Consensus 297 ~pp~~~l~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~eg~~~d~~~~~~~~~~~~~~d~Ydp~~~DP~~~nA~~S 376 (497)
.|-...++.++|+-.+|-|++.+-.++..+.. .|.+.|.+...+|+.+|...+
T Consensus 623 ~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~~---------------------------~G~~~~~~~a~~p~~s~~sa~ 675 (704)
T KOG2153|consen 623 TPEYCSIASLALFEKLLLRYHPISRLMASEIA---------------------------IGVGATGEGALPPELSNLSAA 675 (704)
T ss_pred CccccccccHHHHHHHHHhcchHHHHHHHHHh---------------------------hcCCccCcCCCCccccCchHH
Confidence 99999999999999999988888777765543 578899999999999999999
Q ss_pred cHHHHHHHhhccChHHHHHHHHhhc
Q 010906 377 SLWEIDTLRHHYCPPVSRFVLSLEN 401 (497)
Q Consensus 377 sLWEL~~L~~HyHPsVa~~A~~l~~ 401 (497)
.|||-.+++.||+|+|..-++.+..
T Consensus 676 ~L~~~~~~~~~~~P~v~~~~kql~~ 700 (704)
T KOG2153|consen 676 ELFEQDLLEMHYNPTVPLSLKQLYK 700 (704)
T ss_pred HHhhhHHHHhccCCCCCchHHHHHH
Confidence 9999999999999999988777654
No 8
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.36 E-value=32 Score=40.11 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHHhcCCC-cchHHHHHHH-hhCc-CcccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcC
Q 010906 221 VVSVMALSSLFILMTQHGLE-YPNFYEKLYA-LLVP-SIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILV 297 (497)
Q Consensus 221 ~isllAL~~LF~L~~~~nld-~~rFY~~LY~-LLdp-~l~~s~~ra~fl~LL~~~Lks~~lp~~rVAAFiKRLlqlaL~~ 297 (497)
.+.=-||...+.|++.+|++ --.|..+=.. .-+. .--..+||..+.+-+..|-.. .|. ..+.-|-=|+-.---.
T Consensus 332 dvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~--Fp~-~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 332 DVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK--FPE-VAATVVSLLLDFISDS 408 (948)
T ss_pred cHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc--ChH-HHHHHHHHHHHHhccC
Confidence 35556788888888888764 2233333222 1111 112235566666655554221 122 1233333333333345
Q ss_pred ChhHHHHHHHHHHHHHHhCccccccc
Q 010906 298 PPSGALVIMALIHNLLRRHPSINCLL 323 (497)
Q Consensus 298 pp~~~l~iL~lI~nLLkrhP~l~~Ll 323 (497)
.+.++.++|.||++.+.+.|+++..|
T Consensus 409 N~~aas~vl~FvrE~iek~p~Lr~~i 434 (948)
T KOG1058|consen 409 NEAAASDVLMFVREAIEKFPNLRASI 434 (948)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 78889999999999999999888765
No 9
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=32.57 E-value=5.5e+02 Score=26.08 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=75.8
Q ss_pred hhHhhHHHHHhhcCCchHHHHHHHHHHHHHhcCCCcc---hHHHHHHHhhCcCcccchhHHHHHHHHHHHhcCCCCh--H
Q 010906 206 IMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYP---NFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLP--A 280 (497)
Q Consensus 206 ~ll~DFlt~~~d~gg~isllAL~~LF~L~~~~nld~~---rFY~~LY~LLdp~l~~s~~ra~fl~LL~~~Lks~~lp--~ 280 (497)
..|.+|+.+.++-.. ...-||.|+..|+...+.... ..-+.++.-.+++....+.|-.+++++...+..-. . .
T Consensus 41 ~~L~~F~~~rl~D~~-~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-~~l~ 118 (262)
T PF14500_consen 41 QVLLDFFCSRLDDHA-CVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR-EALQ 118 (262)
T ss_pred HHHHHHHHHHhccHh-hHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 355568777664222 233458888888866665443 55566666667777777889999999988876522 2 1
Q ss_pred HHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhCc
Q 010906 281 YLAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRHP 317 (497)
Q Consensus 281 ~rVAAFiKRLlqlaL~-~pp~~~l~iL~lI~nLLkrhP 317 (497)
..-..|++.+++++=. -.|--.+.+.-+++.+++..+
T Consensus 119 ~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 119 SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1235799999987755 368878888888888888888
No 10
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=31.20 E-value=1.4e+02 Score=27.93 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhCccc
Q 010906 284 AAFVKKLSRLSILVP--PSGALVIMALIHNLLRRHPSI 319 (497)
Q Consensus 284 AAFiKRLlqlaL~~p--p~~~l~iL~lI~nLLkrhP~l 319 (497)
.-.+.++.+.++... +.....++..+..+|++||.+
T Consensus 111 tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 111 TPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred hccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence 334444444444432 466778899999999999964
No 11
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=27.05 E-value=5.2e+02 Score=24.13 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=72.7
Q ss_pred HHHHhccCCCChhHHHHHHHHhhhhhhcccC--ChhhHhhHHHHHhhcCCchHHHHHHHHHHHHHh--cCCCcchHHHHH
Q 010906 173 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLS--NPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQ--HGLEYPNFYEKL 248 (497)
Q Consensus 173 awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~--np~ll~DFlt~~~d~gg~isllAL~~LF~L~~~--~nld~~rFY~~L 248 (497)
.....|+ .....+.+.+|..|.+-|.-.+. ++.++..++.-+-|....++-.|...+..+..+ -|..+..|..-+
T Consensus 29 ~l~~~L~-D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 29 NLYKCLR-DEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3344454 44677888888888876666554 455667888777677777888888888888877 344444455555
Q ss_pred HHhhCcCc------ccchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 010906 249 YALLVPSI------FMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLS 294 (497)
Q Consensus 249 Y~LLdp~l------~~s~~ra~fl~LL~~~Lks~~lp~~rVAAFiKRLlqla 294 (497)
+.+-...- .....+..+++.+..+++.+......+.-.+.|+....
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 108 SSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 54433321 22334555666666666643324455555555555444
No 12
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=24.77 E-value=1.4e+02 Score=22.13 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhCc
Q 010906 283 AAAFVKKLSRLSIL--VPPSGALVIMALIHNLLRRHP 317 (497)
Q Consensus 283 VAAFiKRLlqlaL~--~pp~~~l~iL~lI~nLLkrhP 317 (497)
+..=|++|+.++=. .+++-+-..+.-...||.+|-
T Consensus 3 il~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 3 ILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44558899999987 778888899999999999885
No 13
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=23.85 E-value=63 Score=26.47 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.1
Q ss_pred HHHHHhhccChHHHHHHHHhhcc
Q 010906 380 EIDTLRHHYCPPVSRFVLSLEND 402 (497)
Q Consensus 380 EL~~L~~HyHPsVa~~A~~l~~g 402 (497)
-+..|++|..|.|+.+|+.|...
T Consensus 48 ~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 48 KVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH
Confidence 37789999999999999998764
No 14
>KOG3050 consensus COP9 signalosome, subunit CSN6 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.10 E-value=2.7e+02 Score=28.53 Aligned_cols=64 Identities=17% Similarity=0.387 Sum_probs=43.3
Q ss_pred HHHHHhccC------CCChhHHHHHHHHhhhhhhcccCChhhHhhHHHHHhhcCCchHHH-----HHHHHHHHHHhcC
Q 010906 172 KAWITFLRL------PLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVM-----ALSSLFILMTQHG 238 (497)
Q Consensus 172 ~awL~~L~~------~l~~~l~k~vL~~L~k~i~pHl~np~ll~DFlt~~~d~gg~isll-----AL~~LF~L~~~~n 238 (497)
++.+.+++. ....++++++-.-.++ +|-+..+.+-.+|.+.+-|.| .+|.+ |++-+-++..+.|
T Consensus 208 klil~Y~k~~e~G~l~~N~eILrea~~L~~~--Lp~~~~~~F~d~F~~e~nd~~-l~syl~~iT~~~~nMn~~vnKfn 282 (299)
T KOG3050|consen 208 KLILAYLKKVEAGTLQPNFEILREAYALCHR--LPVMESEKFQDNFYMECNDVG-LISYLGTITKCCNNMNEVVNKFN 282 (299)
T ss_pred HHHHHHHhhhhcCCcCccHHHHHHHHHHHhh--ccccchHHHhHHHHHhcchhh-HHHHHHHHHHhhccHHHHHHHHH
Confidence 355667762 2456899999888888 999999998888988777665 23433 3344455554443
No 15
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=21.00 E-value=5.7e+02 Score=26.77 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=27.1
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHhhhhhhcccCChhhHhh
Q 010906 168 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCD 210 (497)
Q Consensus 168 ~~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~np~ll~D 210 (497)
..+.+..-..|+-++|+.++.++|+.-. .||--+..-.+-.|
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~-~IF~~ig~~~L~~d 94 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYE-YIFERIGPDGLAQD 94 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHH-HHHHhcCHHHHHhh
Confidence 3444455566787889988888887665 46666655444334
No 16
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=20.93 E-value=1.7e+02 Score=32.83 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCcchHHHHHHH-hhC
Q 010906 228 SSLFILMTQHGLEYPNFYEKLYA-LLV 253 (497)
Q Consensus 228 ~~LF~L~~~~nld~~rFY~~LY~-LLd 253 (497)
+.+|++.+.+++.+..||+.||+ ++.
T Consensus 468 ~~vy~~a~~~~~~~~~~F~~~Y~vliG 494 (521)
T COG1384 468 NEVYEVAKKKGILPRAFFQALYRVLIG 494 (521)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC
Confidence 35788999999999999999999 554
Done!