Query 010906
Match_columns 497
No_of_seqs 262 out of 590
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grl_A General vesicular trans 26.1 2.6E+02 0.0088 30.9 9.9 138 170-318 61-245 (651)
2 3dad_A FH1/FH2 domain-containi 22.5 2.4E+02 0.0082 28.6 8.2 139 173-317 122-289 (339)
3 1zoq_C CREB-binding protein, i 18.2 1.5E+02 0.0052 21.5 4.0 33 174-213 6-38 (47)
4 1w9c_A CRM1 protein, exportin 14.7 8.8E+02 0.03 24.1 10.4 54 221-275 182-249 (321)
5 2pmi_B PHO85 cyclin PHO80, ami 14.4 1.2E+02 0.004 30.2 3.7 43 276-319 70-112 (293)
6 4gof_A Small glutamine-rich te 13.5 89 0.0031 23.2 1.9 27 207-233 8-43 (52)
7 3odn_A Dally-like protein; alp 13.3 6.9E+02 0.024 26.6 9.4 55 165-225 79-137 (506)
8 3si5_X Protein CASC5; BUBR1-bl 12.3 69 0.0024 20.1 0.8 7 284-290 14-20 (24)
9 3hts_B Heat shock transcriptio 10.1 2.8E+02 0.0097 23.1 4.2 46 240-290 11-70 (102)
10 2ldu_A Heat shock factor prote 9.4 5E+02 0.017 22.1 5.7 48 238-290 14-75 (125)
No 1
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=26.09 E-value=2.6e+02 Score=30.85 Aligned_cols=138 Identities=20% Similarity=0.129 Sum_probs=77.9
Q ss_pred HHHHHHHhccCC-CChhHHHHHHHHhhhhhhcccCCh----------hhHhhHHHHHhhcCCchHHHHHHHHHHHHHhcC
Q 010906 170 FTKAWITFLRLP-LPVDIYKEVLVTLHRAVIPFLSNP----------IMLCDFLTRSYDIGGVVSVMALSSLFILMTQHG 238 (497)
Q Consensus 170 ~~~awL~~L~~~-l~~~l~k~vL~~L~k~i~pHl~np----------~ll~DFlt~~~d~gg~isllAL~~LF~L~~~~n 238 (497)
-...++..|++. -..++.+.+|++|.- ++.--.++ .-++.+++|.+=.. --.+..|+.++
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~-l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~----~~~i~~Ll~lL---- 131 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYN-IISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ----QENVTLLLSLL---- 131 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHH-HHCCC--------------CHHHHHHHHHHHS----THHHHHHHHHT----
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHH-HhCCCCcccccccccccchHHHHHHHHHHHcC----CccHHHHHHHh----
Confidence 355778888765 578999999999975 23221111 12334444443110 01233344443
Q ss_pred CCcchHHHHHHH--hhCc------C-----cc-------------cchh---HHHHHHHHHHHhcCCCChHHHHHHH---
Q 010906 239 LEYPNFYEKLYA--LLVP------S-----IF-------------MAKH---RAKFFELLDSCLRSPLLPAYLAAAF--- 286 (497)
Q Consensus 239 ld~~rFY~~LY~--LLdp------~-----l~-------------~s~~---ra~fl~LL~~~Lks~~lp~~rVAAF--- 286 (497)
+.++||.++|+ +|.- . ++ ..+. |..-+-|| ..|..++-..+-+.||
T Consensus 132 -~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL-~~Lt~~n~~iQklVAFEna 209 (651)
T 3grl_A 132 -EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL-QALTRSNGAIQKIVAFENA 209 (651)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH-HHHHTTCHHHHHHHHHTTH
T ss_pred -cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH-HHHhcCCHHHHHHHHHhcc
Confidence 56899999998 3321 1 11 1000 11122222 3445555578889999
Q ss_pred HHHHHHHhhcCCh--h--HHHHHHHHHHHHHHhCcc
Q 010906 287 VKKLSRLSILVPP--S--GALVIMALIHNLLRRHPS 318 (497)
Q Consensus 287 iKRLlqlaL~~pp--~--~~l~iL~lI~nLLkrhP~ 318 (497)
+-||..+--.-.. + .+--+|.++.+|++-+|.
T Consensus 210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 8999988755433 2 233689999999988764
No 2
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=22.45 E-value=2.4e+02 Score=28.58 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=73.4
Q ss_pred HHHHhccCCCChhHHHHHHHHhhhhhhcccCChhhHhhHHHH-----Hhhc----CCchHHHHHHHHHHHHHh---c-CC
Q 010906 173 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTR-----SYDI----GGVVSVMALSSLFILMTQ---H-GL 239 (497)
Q Consensus 173 awL~~L~~~l~~~l~k~vL~~L~k~i~pHl~np~ll~DFlt~-----~~d~----gg~isllAL~~LF~L~~~---~-nl 239 (497)
.|+..|. .-..+-.+.+|-.|.+ +| -.++.+...|+.. +.++ .|.+--.+|..+-+||.. . ++
T Consensus 122 ~iiekL~-~~~~~~lr~aLfsLk~-~~--q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 122 AILEKLY-SSSGPELRRSLFSLKQ-IF--QEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHH-HCCHHHHHHHHHHHHH-HH--HTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHh-cCCcHHHHHHHHHHHH-Hh--hcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 3444454 3445667777777775 11 1465655556532 1111 123334456666666632 1 22
Q ss_pred C-cchHHHHHHHhhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHHHH------------HHHHHhh---cCChhHHH
Q 010906 240 E-YPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVK------------KLSRLSI---LVPPSGAL 303 (497)
Q Consensus 240 d-~~rFY~~LY~LLdp~l~~s~~ra~fl~LL~~~Lks~~lp~~rVAAFiK------------RLlqlaL---~~pp~~~l 303 (497)
. .+.|-++||++++...-..-++ -+.||..+...+.-....|..=|+ +|..+-- ...+...+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~--AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKT--ALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHH--HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHH--HHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 2 6999999999988422112222 356666654443223333333333 3333322 34666677
Q ss_pred HHHHHHHHHHHhCc
Q 010906 304 VIMALIHNLLRRHP 317 (497)
Q Consensus 304 ~iL~lI~nLLkrhP 317 (497)
-++.+|-.+|..-|
T Consensus 276 ~amtLIN~lL~~ap 289 (339)
T 3dad_A 276 YTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCC
Confidence 77888888887655
No 3
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=18.20 E-value=1.5e+02 Score=21.46 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=27.7
Q ss_pred HHHhccCCCChhHHHHHHHHhhhhhhcccCChhhHhhHHH
Q 010906 174 WITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 213 (497)
Q Consensus 174 wL~~L~~~l~~~l~k~vL~~L~k~i~pHl~np~ll~DFlt 213 (497)
.+.-||.+-+...-..||.+|.. ||.+++-|+.
T Consensus 6 Ll~tlksp~sp~qqqqvl~ILks-------nPqLMAAfIk 38 (47)
T 1zoq_C 6 LLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 56778888888888899988886 9999999985
No 4
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=14.66 E-value=8.8e+02 Score=24.13 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHhcC---CCcchHHHHHHH-hhCcCcc-------c---chhHHHHHHHHHHHhcC
Q 010906 221 VVSVMALSSLFILMTQHG---LEYPNFYEKLYA-LLVPSIF-------M---AKHRAKFFELLDSCLRS 275 (497)
Q Consensus 221 ~isllAL~~LF~L~~~~n---ld~~rFY~~LY~-LLdp~l~-------~---s~~ra~fl~LL~~~Lks 275 (497)
.++-.+|+.+..++.... -....||+.-|- +| .+++ | =+.++++|+-+.....+
T Consensus 182 ~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il-~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 182 NVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDIL-QHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHhCchhhccHHHHHHHHHHHHHHHHc
Confidence 478888888888886542 124477777776 32 1111 2 14566666666555544
No 5
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=14.39 E-value=1.2e+02 Score=30.23 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhCccc
Q 010906 276 PLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSI 319 (497)
Q Consensus 276 ~~lp~~rVAAFiKRLlqlaL~~pp~~~l~iL~lI~nLLkrhP~l 319 (497)
...|.--+..|++||.+-|- +++...+.+|..|..|..++|..
T Consensus 70 ~~~P~ISI~~Yl~RI~k~t~-ls~~~ll~ALvYLdRL~~~~p~~ 112 (293)
T 2pmi_B 70 KIPPNISIFNYFIRLTKFSS-LEHCVLMTSLYYIDLLQTVYPDF 112 (293)
T ss_dssp SSCCSSCHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhhCCCC
Confidence 34566668899999999876 45777777778888998888854
No 6
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=13.46 E-value=89 Score=23.25 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.1
Q ss_pred hHhhHHHHHhhcCC---------chHHHHHHHHHHH
Q 010906 207 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 233 (497)
Q Consensus 207 ll~DFlt~~~d~gg---------~isllAL~~LF~L 233 (497)
.+.|||....+.|. -++++||...|.+
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 45788888887653 2788999888865
No 7
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=13.26 E-value=6.9e+02 Score=26.65 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHHHHHhhhhhhccc--CChhhHhhHHHHHhh--cCCchHHH
Q 010906 165 KMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFL--SNPIMLCDFLTRSYD--IGGVVSVM 225 (497)
Q Consensus 165 ~~k~~~~~awL~~L~~~l~~~l~k~vL~~L~k~i~pHl--~np~ll~DFlt~~~d--~gg~isll 225 (497)
..-++|++.+...|+. -+..|..|+.+....| .|-.++.||++++.. .|+.+.|.
T Consensus 79 ~~~~~F~e~F~~LL~~------Se~~l~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g~~v~Le 137 (506)
T 3odn_A 79 SKATKFKDIFTALLKE------SRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLL 137 (506)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3445677777777752 2344455554444444 477788888887543 56555543
No 8
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=12.35 E-value=69 Score=20.06 Aligned_cols=7 Identities=43% Similarity=0.923 Sum_probs=4.9
Q ss_pred HHHHHHH
Q 010906 284 AAFVKKL 290 (497)
Q Consensus 284 AAFiKRL 290 (497)
--|||||
T Consensus 14 ndFIKRL 20 (24)
T 3si5_X 14 NDFIKRL 20 (26)
T ss_pred HHHHHHH
Confidence 3578887
No 9
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=10.08 E-value=2.8e+02 Score=23.11 Aligned_cols=46 Identities=26% Similarity=0.459 Sum_probs=26.5
Q ss_pred CcchHHHHHHHhh-CcCccc------------chhHHHHHH-HHHHHhcCCCChHHHHHHHHHHH
Q 010906 240 EYPNFYEKLYALL-VPSIFM------------AKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKL 290 (497)
Q Consensus 240 d~~rFY~~LY~LL-dp~l~~------------s~~ra~fl~-LL~~~Lks~~lp~~rVAAFiKRL 290 (497)
..|.|..+||.+| ||..-+ ......|-+ +|-++.+... .++|+..|
T Consensus 11 ~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~n-----fsSFvRQL 70 (102)
T 3hts_B 11 ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSN-----FASFVRQL 70 (102)
T ss_dssp CSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCC-----HHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCc-----HHHHHHHh
Confidence 4578999999987 453211 123455543 4445555443 56777555
No 10
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=9.44 E-value=5e+02 Score=22.13 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=27.9
Q ss_pred CCCcchHHHHHHHhh-CcCcc------------cchhHHHHHH-HHHHHhcCCCChHHHHHHHHHHH
Q 010906 238 GLEYPNFYEKLYALL-VPSIF------------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKL 290 (497)
Q Consensus 238 nld~~rFY~~LY~LL-dp~l~------------~s~~ra~fl~-LL~~~Lks~~lp~~rVAAFiKRL 290 (497)
....+.|..+||.+| ||+.- .......|-. +|-++.+... .++|+..|
T Consensus 14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~n-----fsSFvRQL 75 (125)
T 2ldu_A 14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNN-----MASFVRQL 75 (125)
T ss_dssp SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCC-----HHHHHHHH
T ss_pred CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCc-----HHHHHHHh
Confidence 345789999999976 55421 1223455543 4555555443 56666554
Done!