Query 010906
Match_columns 497
No_of_seqs 262 out of 590
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 16:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010906.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010906hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zoqc1 a.153.1.1 (C:2065-2111 28.9 34 0.0025 22.9 4.0 33 174-213 6-38 (47)
2 d1wiga1 g.39.1.3 (A:1-32) Acti 25.2 5 0.00036 25.2 -0.7 8 385-392 24-31 (32)
3 d1eg3a1 a.39.1.7 (A:85-209) Dy 18.2 61 0.0045 26.3 4.5 36 199-234 81-122 (125)
4 d2gdwa1 a.28.1.2 (A:8-83) Pept 13.1 69 0.005 22.9 3.3 28 214-242 30-57 (76)
5 d1eo0a_ a.48.3.1 (A:) Transcri 10.3 48 0.0035 24.6 1.4 22 381-402 50-71 (77)
6 d2jaka1 a.118.1.20 (A:30-372) 8.2 3.1E+02 0.022 25.2 6.8 20 180-199 56-75 (343)
7 d1dv5a_ a.28.1.3 (A:) apo-D-al 5.8 94 0.0069 22.2 1.2 54 185-242 4-57 (80)
8 d1iioa_ a.39.4.1 (A:) Hypothet 5.4 1.3E+02 0.0095 22.6 1.8 27 1-27 55-81 (84)
9 d2htsa_ a.4.5.22 (A:) Heat-sho 5.2 3.3E+02 0.024 20.1 4.2 14 242-255 3-17 (92)
10 d2jm6b1 f.1.4.1 (B:147-308) EA 4.9 7.1E+02 0.052 19.6 9.9 88 227-316 45-136 (162)
No 1
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.88 E-value=34 Score=22.92 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.2
Q ss_pred HHHhccCCCChhHHHHHHHHhhhhhhcccCChhhHhhHHH
Q 010906 174 WITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 213 (497)
Q Consensus 174 wL~~L~~~l~~~l~k~vL~~L~k~i~pHl~np~ll~DFlt 213 (497)
.++.||.+-++..-..||.+|.. ||.+++-|+.
T Consensus 6 Ll~tLrsP~sP~QQqQvL~ILks-------NP~lmaaFIk 38 (47)
T d1zoqc1 6 LLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 57788888888889999988875 9999999975
No 2
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.25 E-value=5 Score=25.18 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.6
Q ss_pred hhccChHH
Q 010906 385 RHHYCPPV 392 (497)
Q Consensus 385 ~~HyHPsV 392 (497)
-+||||+.
T Consensus 24 ~khYHP~C 31 (32)
T d1wiga1 24 EKHYHPSC 31 (32)
T ss_dssp SCCBCTTT
T ss_pred ccccCCCC
Confidence 36888864
No 3
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.21 E-value=61 Score=26.26 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=25.5
Q ss_pred hcccCC----hhhHhhHHHHHhhcC--CchHHHHHHHHHHHH
Q 010906 199 IPFLSN----PIMLCDFLTRSYDIG--GVVSVMALSSLFILM 234 (497)
Q Consensus 199 ~pHl~n----p~ll~DFlt~~~d~g--g~isllAL~~LF~L~ 234 (497)
.|+..| .+++..||...||.| |.++++++...+.++
T Consensus 81 ~~~~v~vp~~~dl~LN~LlnvYD~~rtG~i~vls~KvaL~~L 122 (125)
T d1eg3a1 81 HNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 122 (125)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred CcccCChHHHHHHHHHHHHHHhCCCCCCeeeehHHHHHHHHH
Confidence 566666 345556999999986 578888877666544
No 4
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=13.12 E-value=69 Score=22.90 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHhhcCCchHHHHHHHHHHHHHhcCCCcc
Q 010906 214 RSYDIGGVVSVMALSSLFILMTQHGLEYP 242 (497)
Q Consensus 214 ~~~d~gg~isllAL~~LF~L~~~~nld~~ 242 (497)
+.++.|| .|++|+.++-.|-+.+++..+
T Consensus 30 ~f~~lG~-dSl~a~~l~~~i~~~~~~~l~ 57 (76)
T d2gdwa1 30 NFFQIGG-HSLKAMAVAAQVHREYQVELP 57 (76)
T ss_dssp TSSTTTC-TTHHHHHHHHHHHHTTSSCCT
T ss_pred CHHHcCC-ChHHHHHHHHHHHHHHCCCCC
Confidence 3446676 799999999998888776543
No 5
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.30 E-value=48 Score=24.62 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=18.5
Q ss_pred HHHHhhccChHHHHHHHHhhcc
Q 010906 381 IDTLRHHYCPPVSRFVLSLEND 402 (497)
Q Consensus 381 L~~L~~HyHPsVa~~A~~l~~g 402 (497)
+..|+.|-+|.|+.+|+.|..+
T Consensus 50 Vn~LRkh~~~~v~~lAk~Lv~~ 71 (77)
T d1eo0a_ 50 VNKFKKSTNVEISKLVKKMISS 71 (77)
T ss_dssp HHHCCSSSCTTHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHH
Confidence 5678899999999999988764
No 6
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.25 E-value=3.1e+02 Score=25.23 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.0
Q ss_pred CCCChhHHHHHHHHhhhhhh
Q 010906 180 LPLPVDIYKEVLVTLHRAVI 199 (497)
Q Consensus 180 ~~l~~~l~k~vL~~L~k~i~ 199 (497)
..++.+++..+...+..+||
T Consensus 56 ~~l~e~~~~~i~~Mi~~Nif 75 (343)
T d2jaka1 56 NVITEPIYPEVVHMFAVNMF 75 (343)
T ss_dssp SCCCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 45777887777777766655
No 7
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}
Probab=5.77 E-value=94 Score=22.20 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=32.8
Q ss_pred hHHHHHHHHhhhhhhcccCChhhHhhHHHHHhhcCCchHHHHHHHHHHHHHhcCCCcc
Q 010906 185 DIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYP 242 (497)
Q Consensus 185 ~l~k~vL~~L~k~i~pHl~np~ll~DFlt~~~d~gg~isllAL~~LF~L~~~~nld~~ 242 (497)
.+.+.+++.+.+ ++ .. ++.- .+--++.++.||.-|+.++.++..|-..+++.-|
T Consensus 4 ~I~~~v~~il~~-~l-~~-~~~~-i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~ 57 (80)
T d1dv5a_ 4 AIKNGVLDILAD-LT-GS-DDVK-KNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAP 57 (80)
T ss_dssp HHHHHHHHHHHH-HH-TS-SSTT-TCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCC
T ss_pred HHHHHHHHHHHH-Hh-cc-chhh-cCCCccccccCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 455666666665 22 11 1111 1111334577888899999999999888877654
No 8
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.37 E-value=1.3e+02 Score=22.62 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=23.7
Q ss_pred CcceeccCCCccChHHHHHHHHHHHcC
Q 010906 1 MEFVKLGNGGKFHSAIYHKLLHSIVHS 27 (497)
Q Consensus 1 me~v~~~~~~~f~~~~~~~l~~~l~~~ 27 (497)
||++++.+.+-||-.--..++..|++.
T Consensus 55 ~E~~k~l~~~DFP~ksae~lad~ii~r 81 (84)
T d1iioa_ 55 SDAGQVLTADDFPFKSAEEVADTIVNK 81 (84)
T ss_dssp TTTGGGSCGGGSBCSHHHHHHHHHHHH
T ss_pred HHHHhhcCcccCCCCCHHHHHHHHHHh
Confidence 789999999999999999998888753
No 9
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=5.16 E-value=3.3e+02 Score=20.12 Aligned_cols=14 Identities=36% Similarity=0.709 Sum_probs=11.2
Q ss_pred chHHHHHHHhh-CcC
Q 010906 242 PNFYEKLYALL-VPS 255 (497)
Q Consensus 242 ~rFY~~LY~LL-dp~ 255 (497)
|.|..+||.+| +|+
T Consensus 3 P~F~~kL~~~l~~~~ 17 (92)
T d2htsa_ 3 PAFVNKLWSMVNDKS 17 (92)
T ss_dssp CHHHHHHHHHHHCGG
T ss_pred CChHHHHHHHHcCcC
Confidence 67999999987 553
No 10
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.95 E-value=7.1e+02 Score=19.61 Aligned_cols=88 Identities=10% Similarity=-0.025 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHhhCcCcccchhHHHHHHHHHHHhcCCCChHHHHHHH---HHHHHHHhhcC-ChhHH
Q 010906 227 LSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAF---VKKLSRLSILV-PPSGA 302 (497)
Q Consensus 227 L~~LF~L~~~~nld~~rFY~~LY~LLdp~l~~s~~ra~fl~LL~~~Lks~~lp~~rVAAF---iKRLlqlaL~~-pp~~~ 302 (497)
...|-.+.....-.++.+|+.+.+-|+.. ...-...|.......++....+=.||.|+ .=+|+.-|... -+..+
T Consensus 45 ~~~L~~~g~ele~~~~~~f~~~~~~l~i~--~~~~~~~f~~Va~elf~dG~~NWGRIval~~F~~~la~~~~~~~~~~~v 122 (162)
T d2jm6b1 45 LETLRRVGDGVQRNHETAFQGMLRKLDIK--NEGDVKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFI 122 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCS--STTHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHcCChhHH
Confidence 44444455444445677777777744321 11224567777777776654465677654 44555544433 35566
Q ss_pred HHHHHHHHHHHHhC
Q 010906 303 LVIMALIHNLLRRH 316 (497)
Q Consensus 303 l~iL~lI~nLLkrh 316 (497)
-.++.++...|..|
T Consensus 123 ~~i~~~~~~fl~~~ 136 (162)
T d2jm6b1 123 EPLAETITDVLVRT 136 (162)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67778888877664
Done!