BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010907
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain
Length = 145
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 70/77 (90%)
Query: 372 TLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSK 431
TLLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSK
Sbjct: 1 TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSK 60
Query: 432 QHAVIQFRQVEKEQPDA 448
QHAVIQ+R+ EKE+PD
Sbjct: 61 QHAVIQYREXEKEKPDG 77
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p
pdb|3ELV|B Chain B, Crystal Structure Of Full-Length Yeast Pml1p
Length = 205
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 47/119 (39%), Gaps = 30/119 (25%)
Query: 353 PSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQ---- 408
P F SG L E+N G+ L EP DA P + +A + L I+R+
Sbjct: 31 PDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKD 90
Query: 409 ------------SCYLFGRER--------------RVADIPTDHPSCSKQHAVIQFRQV 441
SCYL GRE VADI + SKQH VIQFR V
Sbjct: 91 KGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV 149
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
pdb|2JKD|B Chain B, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
Length = 187
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 47/119 (39%), Gaps = 30/119 (25%)
Query: 353 PSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQ---- 408
P F SG L E+N G+ L EP DA P + +A + L I+R+
Sbjct: 7 PDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKD 66
Query: 409 ------------SCYLFGRER--------------RVADIPTDHPSCSKQHAVIQFRQV 441
SCYL GRE VADI + SKQH VIQFR V
Sbjct: 67 KGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV 125
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 374 LFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQH 433
LF+ P A KP L V K G+ L E L I + YLFGR + D DH SCS+ H
Sbjct: 21 LFDCPTWAGKPPPGLHLDVVK-GDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVH 79
Query: 434 AVIQFRQ 440
A + + +
Sbjct: 80 AALVYHK 86
>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204
Length = 158
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 30/95 (31%)
Query: 377 EPPDARKPS-------------VRWRLYVFKAGEMLKEPLY---IHRQSCYLFGRERR-- 418
EP DA P + L +++ + K P ++ +SCYL GRE
Sbjct: 8 EPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHS 67
Query: 419 ------------VADIPTDHPSCSKQHAVIQFRQV 441
VADI + SKQH VIQFR V
Sbjct: 68 LDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV 102
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 375 FNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHA 434
+ EPP + + L K G +L C LFGR D+ +HPS S+ HA
Sbjct: 8 YQEPPWGGPATAPYSLETLKGGTILGTRSLKGTSYC-LFGRLSG-CDVCLEHPSVSRYHA 65
Query: 435 VIQFR 439
V+Q R
Sbjct: 66 VLQHR 70
>pdb|3HR5|L Chain L, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|A Chain A, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|P Chain P, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|Q Chain Q, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
Length = 219
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 441 VEKEQPDAASMYYCMRTRMIDWHQGTFCMKEV------PDFFL-----EELNSATRVGRC 489
+ QP+ + YYC + ++ W G E+ P F+ E+L S T C
Sbjct: 80 ISSLQPEDFATYYCSQNTLVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVC 139
Query: 490 YLSGLFP 496
L+ +P
Sbjct: 140 LLNNFYP 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,296,851
Number of Sequences: 62578
Number of extensions: 374833
Number of successful extensions: 510
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 19
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)