BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010907
(497 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W4D8|DDL_ARATH FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL
PE=1 SV=1
Length = 314
Score = 221 bits (564), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 178/256 (69%), Gaps = 17/256 (6%)
Query: 208 PVSRSPSPHTKRLRRADAKVT---EREREND-HSRASDKDIHRERVSERETGSERKERRE 263
P SRSPSP TKRLRRA + RERE+D R R+R R+ ERK E
Sbjct: 3 PSSRSPSPRTKRLRRARGEKEIGRSREREDDGREREKRNSRERDRDIGRDRDRERKGEGE 62
Query: 264 RDFEGDREGRKLGRNEASNQS---------SRSRRDRSTSPLDRPPRSRHRSPQSADGSW 314
RD E + R+ GR + + SR R +RSTSP DR RS RSP+ A S
Sbjct: 63 RDREVGDKRRRSGREDTEKRRRTRTDDERYSRGRHERSTSPSDRSHRSSRRSPERAIAS- 121
Query: 315 ARHEVMNS--GGAEYRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVT 372
RH+ ++ GG+E N + DSVA+M+A EEAL AK+K++PSFELSGKLA ETNR+RG+T
Sbjct: 122 -RHDEGSNARGGSEEPNVEEDSVARMRAVEEALAAKKKEEPSFELSGKLAEETNRYRGIT 180
Query: 373 LLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQ 432
LLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSKQ
Sbjct: 181 LLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQ 240
Query: 433 HAVIQFRQVEKEQPDA 448
HAVIQ+R++EKE+PD
Sbjct: 241 HAVIQYREMEKEKPDG 256
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 69 QSPVSRSPSPRTRRLMRSRDERELGKVTEREQE 101
+P SRSPSPRT+RL R+R E+E+G+ ERE +
Sbjct: 1 MAPSSRSPSPRTKRLRRARGEKEIGRSREREDD 33
>sp|Q8TAD8|SNIP1_HUMAN Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1
SV=1
Length = 396
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/354 (35%), Positives = 167/354 (47%), Gaps = 66/354 (18%)
Query: 117 SSSPSPRTRRLARARDEGDAERVTERDHERNNGRENGKGKLGERTRSPVSRSPSPRTKRL 176
SPSP T AR+ G+ R R + + +G+ RS SPR+KR
Sbjct: 50 GGSPSPPTSEPARSGHRGNRARGVSRSPPKKKNKASGR------------RSKSPRSKRN 97
Query: 177 RRAHAEKDADKLTEKEHERNHSRTSDKEAHLPVSRSPSPHTKRLRRADAKVTERERENDH 236
R H K ++H R R + H R PS E+E+
Sbjct: 98 RSPHHSTVKVKQEREDHPR---RGREDRQH----REPS----------------EQEHRR 134
Query: 237 SRASDKDIHRERVSERETGSERKERRERDFEGDREGRKLGRNEASNQSSRSRRDRSTSPL 296
+R SD+D HR +R T +ER G +G+ R+ + Q+ R+ +
Sbjct: 135 ARNSDRDRHRGHSHQRRTSNERP--------GSGQGQGRDRDTQNLQAQEEEREFYNA-- 184
Query: 297 DRPPRSRHRSPQSADGSWARHEVMNSGGAEYRNDDIDSVAQMKAAEEALQAKEKQKPSFE 356
R R R+ GS ++ V GG E+ + AKE KPSFE
Sbjct: 185 -RRREHRQRNDVGGGGSESQELVPRPGG--------------NNKEKEVPAKE--KPSFE 227
Query: 357 LSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRE 416
LSG L +TN FRGV + ++EPP+AR P RWRLY FK E+L +YIHRQS YL GR
Sbjct: 228 LSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPV-MYIHRQSAYLLGRH 286
Query: 417 RRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDW--HQGTFC 468
RR+ADIP DHPSCSKQHAV Q+R VE + D ++ ++ +ID GTF
Sbjct: 287 RRIADIPIDHPSCSKQHAVFQYRLVEYTRAD-GTVGRRVKPYIIDLGSGNGTFL 339
>sp|Q5M9G6|SNIP1_RAT Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1
PE=2 SV=1
Length = 389
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
Query: 350 KQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQS 409
K+KPSFELSG L +TN FRGV + ++EPP+AR P RWRLY FK E+L +YIHRQS
Sbjct: 212 KEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLP-VMYIHRQS 270
Query: 410 CYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDW--HQGTF 467
YL GR RR+ADIP DHPSCSKQHAV Q+R VE + D ++ ++ +ID GTF
Sbjct: 271 AYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRAD-GTVGRRVKPYIIDLGSGNGTF 329
Query: 468 C 468
Sbjct: 330 L 330
>sp|Q8BIZ6|SNIP1_MOUSE Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1
SV=1
Length = 383
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
Query: 350 KQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQS 409
K+KPSFELSG L +TN FRGV + ++EPP+AR P RWRLY FK E+L +YIHRQS
Sbjct: 208 KEKPSFELSGALLEDTNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPV-MYIHRQS 266
Query: 410 CYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDW--HQGTF 467
YL GR RR+ADIP DHPSCSKQHAV Q+R VE + D ++ ++ +ID GTF
Sbjct: 267 AYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRAD-GTVGRRVKPYIIDLGSGNGTF 325
Query: 468 C 468
Sbjct: 326 L 326
>sp|Q54VU4|Y8013_DICDI Probable serine/threonine-protein kinase DDB_G0280133
OS=Dictyostelium discoideum GN=DDB_G0280133 PE=3 SV=1
Length = 1505
Score = 92.4 bits (228), Expect = 7e-18, Method: Composition-based stats.
Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 51/288 (17%)
Query: 215 PHTKRLRRADAKVTERERENDHSRASDKDIHRERVSE------RETGSERKERRERDFEG 268
PH +R+ K+++R+ + ++ D D +++R ++ ++ G++R + EG
Sbjct: 1194 PHLRRI-----KMSKRDNSYNKRKSEDGDSYKKRDNQSYDDILKDEGNKRLRELQTYSEG 1248
Query: 269 DREGRKLGRNE-----ASNQSSRSRRDRSTSPLDRPPRSRHRSPQSADGSWARHEVMNSG 323
D+ + R+ +N+ + + + + + R R++ ++ + + +++ S
Sbjct: 1249 DKSRQHYNRDSNDNSRDNNRYNNRDNNNNNNSNNNRERDRYKKNKNENFDYGKYKFGKSN 1308
Query: 324 GAEYRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRG------------- 370
E D + V ++KP F+ SG L +++ G
Sbjct: 1309 EDEENKDKPNIV--------------REKPDFKPSGSLKNDSSSNYGTISSGRNNNNGEE 1354
Query: 371 -----VTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTD 425
+ L ++EP +A+ P+ +W LY FK + L + +Y+HR+ +LFGR R +ADIP D
Sbjct: 1355 DEENKIKLKWHEPAEAKLPTEKWMLYPFKGKDQL-DTIYLHRKKSFLFGRNRDIADIPID 1413
Query: 426 HPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWH--QGTFCMKE 471
HPSCS QHAVI FR +KE P+ S+ + +ID GTF E
Sbjct: 1414 HPSCSSQHAVIVFRIRKKENPNTGSIKTFILPYIIDLESTNGTFLKGE 1461
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,036,429
Number of Sequences: 539616
Number of extensions: 8384616
Number of successful extensions: 52348
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 1881
Number of HSP's that attempted gapping in prelim test: 30089
Number of HSP's gapped (non-prelim): 10167
length of query: 497
length of database: 191,569,459
effective HSP length: 122
effective length of query: 375
effective length of database: 125,736,307
effective search space: 47151115125
effective search space used: 47151115125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)