Query 010907
Match_columns 497
No_of_seqs 250 out of 1054
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:55:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1882 Transcriptional regula 100.0 1.2E-40 2.7E-45 323.7 9.1 164 319-487 108-274 (293)
2 KOG1881 Anion exchanger adapto 99.6 8.3E-16 1.8E-20 167.0 4.3 112 369-485 138-252 (793)
3 PF00498 FHA: FHA domain; Int 99.5 1.3E-14 2.9E-19 112.2 6.6 63 411-487 1-66 (68)
4 cd00060 FHA Forkhead associate 99.4 6.1E-12 1.3E-16 101.1 10.2 93 388-495 2-100 (102)
5 KOG1880 Nuclear inhibitor of p 99.3 5.2E-13 1.1E-17 134.4 3.0 99 373-484 3-104 (337)
6 smart00240 FHA Forkhead associ 99.2 3.5E-11 7.5E-16 88.3 4.9 50 411-473 1-52 (52)
7 TIGR03354 VI_FHA type VI secre 99.2 6.8E-11 1.5E-15 122.3 8.5 78 402-495 18-103 (396)
8 PLN02927 antheraxanthin epoxid 99.1 1.5E-10 3.2E-15 126.8 7.7 87 386-487 532-633 (668)
9 COG1716 FOG: FHA domain [Signa 99.0 3.2E-10 7E-15 102.1 6.5 69 407-491 87-159 (191)
10 COG3456 Predicted component of 98.6 3.5E-08 7.5E-13 103.5 6.0 77 403-495 21-104 (430)
11 KOG0615 Serine/threonine prote 97.6 8.5E-05 1.8E-09 79.0 5.1 82 402-487 58-144 (475)
12 TIGR02500 type_III_yscD type I 97.4 0.00044 9.6E-09 72.0 8.6 83 388-487 1-87 (410)
13 KOG0245 Kinesin-like protein [ 91.0 0.52 1.1E-05 55.5 7.0 69 403-486 472-544 (1221)
14 KOG2293 Daxx-interacting prote 80.9 2.9 6.2E-05 46.5 5.7 90 389-495 432-529 (547)
15 TIGR01663 PNK-3'Pase polynucle 79.1 5.1 0.00011 44.3 6.9 69 402-487 26-97 (526)
16 KOG0241 Kinesin-like protein [ 77.4 3.3 7.2E-05 49.2 5.0 68 402-486 462-530 (1714)
17 PF14640 TMEM223: Transmembran 71.2 5.8 0.00012 38.0 4.3 65 389-472 92-160 (170)
18 KOG1892 Actin filament-binding 48.8 29 0.00062 41.9 5.4 72 401-488 371-447 (1629)
19 PF01479 S4: S4 domain; Inter 33.5 27 0.00058 25.7 1.5 24 463-486 25-48 (48)
20 PRK01777 hypothetical protein; 31.1 38 0.00083 29.6 2.3 30 459-489 44-74 (95)
21 PRK15367 type III secretion sy 28.4 1.9E+02 0.0042 31.6 7.4 78 386-484 3-82 (395)
22 PF11012 DUF2850: Protein of u 24.0 62 0.0013 27.9 2.3 40 456-495 12-61 (79)
23 KOG3263 Nucleic acid binding p 22.0 41 0.00089 33.2 0.9 67 1-78 1-89 (196)
No 1
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-40 Score=323.69 Aligned_cols=164 Identities=49% Similarity=0.767 Sum_probs=145.7
Q ss_pred ccCCCCCcccCCCcchHHhhhHHHHHHhhhhccCCCcccccchhhhcccccccccccCCCCCCCCCCcceEEEEeecCcc
Q 010907 319 VMNSGGAEYRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEM 398 (497)
Q Consensus 319 ~~n~~~~~~~~~~DDSi~~~~~~ee~~eEkeKekPnFepSG~La~eSNtv~GVtLKYsEPpdArkP~~~WrLyVfKGGe~ 398 (497)
+.|++..+.+.-- ++ .+..+.++.+.+.|++|+|++||+|++++|++.||+|+|++|++|.+|...|.||+||+++.
T Consensus 108 ~~~~r~~e~~~nn-~~--k~~~~~k~~~~~dke~p~f~lsg~l~E~tn~~~gv~v~y~eppearkP~kRwrLy~fk~~e~ 184 (293)
T KOG1882|consen 108 FSNARLRELESNN-GG--KEGIALKEVEPQDKEKPSFELSGALLEDTNRFRGVVVKYNEPPEARKPKKRWRLYPFKCYEV 184 (293)
T ss_pred ccchhhhhhcccc-cC--CccccccccCchhccCCchhhchhhhhhhcceeeEEEEecCCchhcCchhheecccccCCcc
Confidence 6777776533222 22 45555566667789999999999999999999999999999999999999999999999998
Q ss_pred ccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCC-C
Q 010907 399 LKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPD-F 475 (497)
Q Consensus 399 l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~-~ 475 (497)
+ ++++||.++||||||+..++||.|+||+||+|||||||+.++.+-++|+ ++..|++|||| |+||||||+.+|. .
T Consensus 185 l-~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt-~grrvkpYiiDLgS~NgTfLNnk~Iepq 262 (293)
T KOG1882|consen 185 L-PVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGT-VGRRVKPYIIDLGSGNGTFLNNKVIEPQ 262 (293)
T ss_pred c-chheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCc-cceeeeeEEEecCCCCcceecCcccCch
Confidence 8 6899999999999999999999999999999999999999988888997 88899999999 9999999999986 7
Q ss_pred ceeccCCCCEEe
Q 010907 476 FLEELNSATRVG 487 (497)
Q Consensus 476 ~yleLrdGDrIG 487 (497)
.|++|..+|+|-
T Consensus 263 RYyEL~ekDvlk 274 (293)
T KOG1882|consen 263 RYYELREKDVLK 274 (293)
T ss_pred heeeeecCceee
Confidence 899999998754
No 2
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.58 E-value=8.3e-16 Score=166.95 Aligned_cols=112 Identities=25% Similarity=0.341 Sum_probs=93.4
Q ss_pred cccccccCCCCCCCCCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCcc
Q 010907 369 RGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDA 448 (497)
Q Consensus 369 ~GVtLKYsEPpdArkP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG 448 (497)
....+.|..|+|+++|...|.|.|+|.|..+ .++.|....+|+|||.. .||++|.||+||+.||+|||... .+++
T Consensus 138 pa~~~py~vppw~~P~~~~~~lEvlKeg~ii-et~~l~~~~~~~fgr~~-~cD~~~eHpsISr~h~vlQy~~~---~~~~ 212 (793)
T KOG1881|consen 138 PAAAAPYEVPPWSGPPAAIFQLEVLKEGAII-ETEDLKGAAACLFGRLG-GCDVALEHPSISRFHAVLQYKAS---GPDD 212 (793)
T ss_pred cCCCCcccCCCCCCCcccchhhhhhccCcee-eeeecccceeEEecccC-CCccccccCcccccceeeeccCC---CCCc
Confidence 4456789999999999999999999999887 58999889999999998 69999999999999999999753 1222
Q ss_pred ccccccceeEEEe--CCCCeeecCccCC-CceeccCCCCE
Q 010907 449 ASMYYCMRTRMID--WHQGTFCMKEVPD-FFLEELNSATR 485 (497)
Q Consensus 449 ~~~~~~IrpYLiD--STNGTFVNGeRI~-~~yleLrdGDr 485 (497)
-+.+....|||.| ||+|||||..++. ..|+.+.-|.+
T Consensus 213 p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v 252 (793)
T KOG1881|consen 213 PCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHV 252 (793)
T ss_pred cccCCCCceEEeeccccccceeccccCCCcchhhhhHHHH
Confidence 1122455689999 9999999999965 78888777753
No 3
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.54 E-value=1.3e-14 Score=112.15 Aligned_cols=63 Identities=27% Similarity=0.275 Sum_probs=52.7
Q ss_pred eeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCC-CceeccCCCCEEe
Q 010907 411 YLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPD-FFLEELNSATRVG 487 (497)
Q Consensus 411 YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~-~~yleLrdGDrIG 487 (497)
|+|||+. .|||+|++++||++||.|.|.. ++ .|||.| |+|||||||+++. ...+.|.+||+|-
T Consensus 1 ~~iGR~~-~~di~l~~~~iSr~Ha~i~~~~------~~-------~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~ 66 (68)
T PF00498_consen 1 VTIGRSP-DCDIVLPDPSISRRHARISFDD------DG-------QFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIR 66 (68)
T ss_dssp EEEESST-TSSEEETSTTSSTTSEEEEEET------TE-------EEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEE
T ss_pred CEEcCCC-CCCEEECCHheeeeeeEEEEec------ee-------eEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEE
Confidence 7899997 5999999999999999999974 22 489999 9999999999876 4667899999764
No 4
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.35 E-value=6.1e-12 Score=101.15 Aligned_cols=93 Identities=28% Similarity=0.362 Sum_probs=69.7
Q ss_pred eEEEEeecCccccceEEeeccceeeecCCCCcc-ceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCC
Q 010907 388 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVA-DIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQ 464 (497)
Q Consensus 388 WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vc-DIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STN 464 (497)
|.|.++.++.. ...+.|.....++|||+.. | ||.|.++.||++||+|.+... + .+|++| |+|
T Consensus 2 ~~L~~~~~~~~-~~~~~l~~~~~~~iGr~~~-~~~i~l~~~~iS~~H~~i~~~~~------~-------~~~~~~~~s~~ 66 (102)
T cd00060 2 PRLVVLSGDAS-GRRYYLDPGGTYTIGRDSD-NCDIVLDDPSVSRRHAVIRYDGD------G-------GVVLIDLGSTN 66 (102)
T ss_pred eEEEEecCCCc-eeEEEECCCCeEEECcCCC-cCCEEcCCCCeeCcceEEEEcCC------C-------CEEEEECCCCC
Confidence 67777776522 3568885537799999985 7 999999999999999999741 2 357776 999
Q ss_pred CeeecCccCCC-ceeccCCCCE--EeceEeeccC
Q 010907 465 GTFCMKEVPDF-FLEELNSATR--VGRCYLSGLF 495 (497)
Q Consensus 465 GTFVNGeRI~~-~yleLrdGDr--IG~t~Ls~lf 495 (497)
|||||+..+.. ..+.|.+||. ||...+.+.|
T Consensus 67 g~~vn~~~~~~~~~~~l~~gd~i~ig~~~~~~~~ 100 (102)
T cd00060 67 GTFVNGQRVSPGEPVRLRDGDVIRLGNTSISFRF 100 (102)
T ss_pred CeEECCEECCCCCcEECCCCCEEEECCeEEEEEE
Confidence 99999999772 4567888875 5643554444
No 5
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=99.32 E-value=5.2e-13 Score=134.35 Aligned_cols=99 Identities=31% Similarity=0.485 Sum_probs=80.9
Q ss_pred cccCCCCCCCCCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCcccccc
Q 010907 373 LLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMY 452 (497)
Q Consensus 373 LKYsEPpdArkP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~ 452 (497)
-+|..|.||.+|+...+|.|.+++..+ +.+.|..+.+|+|||....||++|+|.+||++||.+.|... +.
T Consensus 3 s~~~~p~wA~kpp~g~hldv~k~d~li-~kl~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkh------l~--- 72 (337)
T KOG1880|consen 3 SNFDPPSWAGKPPAGLHLDVVKGDKLI-QKLIIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKH------LS--- 72 (337)
T ss_pred CcCCCCCcccCCCCCCceeeeecchhH-HHHHhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhc------cc---
Confidence 468899999999999999999987655 35556677899999999999999999999999999999763 21
Q ss_pred ccceeEEEe--CCCCeeecCccCC-CceeccCCCC
Q 010907 453 YCMRTRMID--WHQGTFCMKEVPD-FFLEELNSAT 484 (497)
Q Consensus 453 ~~IrpYLiD--STNGTFVNGeRI~-~~yleLrdGD 484 (497)
++|||| |++||||...++. ...+.|.-|.
T Consensus 73 ---~~~lidl~s~hgtf~g~~rL~~~~p~~l~i~~ 104 (337)
T KOG1880|consen 73 ---RIFLIDLGSTHGTFLGNERLEPHKPVQLEIGS 104 (337)
T ss_pred ---eEEEEEccCCcceeeeeeeeccCCCccccCCc
Confidence 578998 9999999998865 3344555554
No 6
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.17 E-value=3.5e-11 Score=88.27 Aligned_cols=50 Identities=32% Similarity=0.402 Sum_probs=42.8
Q ss_pred eeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccC
Q 010907 411 YLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVP 473 (497)
Q Consensus 411 YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI 473 (497)
++|||.+..|||+|+++.||+.||.|.+.. ++ .+||.| |+|||||||++|
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~------~~-------~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDG------GG-------RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECC------CC-------eEEEEECCCCCCeeECCEEC
Confidence 589999844999999999999999999864 23 479999 699999999864
No 7
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.16 E-value=6.8e-11 Score=122.30 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=63.9
Q ss_pred eEEeeccceeeecCCCCccceecCCCc--cccCceEEEEecccccCCccccccccceeEEEe-CCCCeeec--CccCCC-
Q 010907 402 PLYIHRQSCYLFGRERRVADIPTDHPS--CSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQGTFCM--KEVPDF- 475 (497)
Q Consensus 402 ti~L~rqs~YlIGRd~~vcDIvLdhPS--VSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNGTFVN--GeRI~~- 475 (497)
.+.|. ...++|||+. .|||+|.++. ||+.||.|.+.. | .|||+| |+|||||| |.+|..
T Consensus 18 ~~~f~-~~~~~IGR~~-~~d~~l~d~~~~VS~~Ha~I~~~~-------g-------~~~l~DlStNGT~VN~sg~~l~~~ 81 (396)
T TIGR03354 18 QKTFG-TNGGTIGRSE-DCDWVLPDPERHVSGRHARIRYRD-------G-------AYLLTDLSTNGVFLNGSGSPLGRG 81 (396)
T ss_pred EEEEC-CCCEEEecCC-CCCEEeCCCCCCcchhhcEEEEEC-------C-------EEEEEECCCCCeEECCCCCCCCCC
Confidence 57774 4568999998 5999999999 999999999963 3 489999 99999999 788773
Q ss_pred ceeccCCCC--EEeceEeeccC
Q 010907 476 FLEELNSAT--RVGRCYLSGLF 495 (497)
Q Consensus 476 ~yleLrdGD--rIG~t~Ls~lf 495 (497)
..+.|.+|| .||.+.|...+
T Consensus 82 ~~~~L~~GD~I~iG~~~lrv~~ 103 (396)
T TIGR03354 82 NPVRLEQGDRLRLGDYEIRVSL 103 (396)
T ss_pred CceEcCCCCEEEECCEEEEEEe
Confidence 346788887 58988886554
No 8
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.09 E-value=1.5e-10 Score=126.84 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=66.5
Q ss_pred cceEEEEeecCccccceEEe--eccceeeecCCCCccce-----ecCCCccccCceEEEEecccccCCccccccccceeE
Q 010907 386 VRWRLYVFKAGEMLKEPLYI--HRQSCYLFGRERRVADI-----PTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTR 458 (497)
Q Consensus 386 ~~WrLyVfKGGe~l~eti~L--~rqs~YlIGRd~~vcDI-----vLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpY 458 (497)
..|.|.+.-++....+.|.| +.+..++|||.+. ||+ +|.+|.||++||.|.+.. + .+|
T Consensus 532 ~~w~l~~~~~~~~~~~~~~l~~~~~~p~~iG~~~~-~~~~~~~i~i~~~~vS~~Ha~i~~~~-------~-------~~~ 596 (668)
T PLN02927 532 GEWYLIPHGDDCCVSETLCLTKDEDQPCIVGSEPD-QDFPGMRIVIPSSQVSKMHARVIYKD-------G-------AFF 596 (668)
T ss_pred CCeEEEecCCCCcccceeeeecCCCCCeEecCCCC-cCCCCceEEecCCccChhHeEEEEEC-------C-------EEE
Confidence 35889987555433356777 2345689999984 995 999999999999999973 3 489
Q ss_pred EEe--CCCCeeecCcc---CC---CceeccCCCCEEe
Q 010907 459 MID--WHQGTFCMKEV---PD---FFLEELNSATRVG 487 (497)
Q Consensus 459 LiD--STNGTFVNGeR---I~---~~yleLrdGDrIG 487 (497)
|+| |||||||||+. |. +....|+.||.|.
T Consensus 597 ~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~ 633 (668)
T PLN02927 597 LMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIE 633 (668)
T ss_pred EEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEE
Confidence 999 99999998876 54 3456788887644
No 9
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.04 E-value=3.2e-10 Score=102.14 Aligned_cols=69 Identities=22% Similarity=0.216 Sum_probs=55.0
Q ss_pred ccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCCCceeccCCCC
Q 010907 407 RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPDFFLEELNSAT 484 (497)
Q Consensus 407 rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~~~yleLrdGD 484 (497)
....|.|||+. .|||+|+++.||+.||.|.+... .+||+| |+|||||||.++... +.|.+||
T Consensus 87 ~~~~~tigr~~-~~~i~~~~~~vSR~Ha~l~~~~~--------------~~~~~d~~S~nGt~vn~~~v~~~-~~l~~gd 150 (191)
T COG1716 87 GEPVTTIGRDP-DNDIVLDDDVVSRRHAELRREGN--------------EVFLEDLGSTNGTYVNGEKVRQR-VLLQDGD 150 (191)
T ss_pred ccceEEeccCC-CCCEEcCCCccccceEEEEEeCC--------------ceEEEECCCCcceEECCeEccCc-EEcCCCC
Confidence 34579999987 59999999999999999999742 368899 999999999998742 3466665
Q ss_pred --EEeceEe
Q 010907 485 --RVGRCYL 491 (497)
Q Consensus 485 --rIG~t~L 491 (497)
.||....
T Consensus 151 ~i~i~~~~~ 159 (191)
T COG1716 151 VIRLGGTLA 159 (191)
T ss_pred EEEECccce
Confidence 5665544
No 10
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.64 E-value=3.5e-08 Score=103.47 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=60.4
Q ss_pred EEeeccceeeecCCCCccceecCCC--ccccCceEEEEecccccCCccccccccceeEEEe-CCCCeeecCccCC--Cce
Q 010907 403 LYIHRQSCYLFGRERRVADIPTDHP--SCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQGTFCMKEVPD--FFL 477 (497)
Q Consensus 403 i~L~rqs~YlIGRd~~vcDIvLdhP--SVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNGTFVNGeRI~--~~y 477 (497)
..|+.+ -.+|||+++ ||+.|+|| .||++||.|.|+. | .|||.| |.|||||||-... ...
T Consensus 21 ~~f~~~-~g~IGrs~d-cdW~i~D~~~~VS~~Hc~I~~~d-------g-------~f~L~DtS~g~l~VNgs~~~~g~~~ 84 (430)
T COG3456 21 KLFDRG-GGVIGRSPD-CDWQIDDPERFVSKQHCTISYRD-------G-------GFCLTDTSNGGLLVNGSDLPLGEGS 84 (430)
T ss_pred hhhhcC-CcccccCCC-CCccccCcccccchhheEEEecC-------C-------eEEEEecCCCceeecccccCCCCCc
Confidence 444333 479999995 99999987 6899999999984 5 389999 9999999999732 234
Q ss_pred eccCCCC--EEeceEeeccC
Q 010907 478 EELNSAT--RVGRCYLSGLF 495 (497)
Q Consensus 478 leLrdGD--rIG~t~Ls~lf 495 (497)
..|.+|+ .||.+.+.-.|
T Consensus 85 ~RLqqGd~i~iG~y~i~V~l 104 (430)
T COG3456 85 ARLQQGDEILIGRYIIRVHL 104 (430)
T ss_pred cccccCCEEeeccEEEEEEe
Confidence 6788886 58988876544
No 11
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=8.5e-05 Score=78.99 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=59.3
Q ss_pred eEEeeccceeeecCCCCccceecCCCccccCceEEEEec-cccc--CCccccccccceeEEEe-CCCCeeecCccCC-Cc
Q 010907 402 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQ-VEKE--QPDAASMYYCMRTRMID-WHQGTFCMKEVPD-FF 476 (497)
Q Consensus 402 ti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~-~eke--n~dG~~~~~~IrpYLiD-STNGTFVNGeRI~-~~ 476 (497)
.+.+.. ..|+|||+. .||+++..+.+|..|..|.+.. ..+. ..++ ......+||.| |+||||||.+.+. ..
T Consensus 58 ~~d~~n-d~f~fGR~~-~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr--~~~sn~~y~~DhS~nGT~VN~e~i~k~~ 133 (475)
T KOG0615|consen 58 SIDLAN-DEFTFGRGD-SCDAPLNLNNVSNKHFKILLYNKISKIHFRIDR--DKNSNRVYLHDHSRNGTFVNDEMIGKGL 133 (475)
T ss_pred cceecc-ceEEecCCC-cccccccCccccccchheeeeeeeeeeeecccC--CCccceEEEEecccCcccccHhHhhccc
Confidence 467754 579999997 6999999999999999885431 0000 0122 34456789999 9999999999865 33
Q ss_pred eeccCCCCEEe
Q 010907 477 LEELNSATRVG 487 (497)
Q Consensus 477 yleLrdGDrIG 487 (497)
.-.|++||.|-
T Consensus 134 ~r~lkN~dei~ 144 (475)
T KOG0615|consen 134 SRILKNGDEIS 144 (475)
T ss_pred cccccCCCEEE
Confidence 45799998754
No 12
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.44 E-value=0.00044 Score=72.05 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=60.3
Q ss_pred eEEEEeecCccccceEEeeccceeeec-CCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEeCCCCe
Q 010907 388 WRLYVFKAGEMLKEPLYIHRQSCYLFG-RERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGT 466 (497)
Q Consensus 388 WrLyVfKGGe~l~eti~L~rqs~YlIG-Rd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiDSTNGT 466 (497)
|.|.|+.|...+ ..+.|... .|+|| ++. .|||+|.++.||++||.|++.. .| +.|.|+..+.
T Consensus 1 ~~lrvl~G~~~G-~~~~L~~g-~~~iG~~~~-~~di~L~d~~~~~~h~~l~v~~------~~--------~~l~~~~~~~ 63 (410)
T TIGR02500 1 WKLRVLSGPHRG-AELPLPEG-NLVLGTDAA-DCDIVLSDGGIAAVHVSLHVRL------EG--------VTLAGAVEPA 63 (410)
T ss_pred CEEEEecCCCCC-cEEECCCC-ceEeccCCC-CcEEEeCCCCccchheEEEEcC------ce--------EEEecCCcce
Confidence 778888886655 57889655 49999 887 5999999999999999999964 23 4566688889
Q ss_pred eecC--ccCC-CceeccCCCCEEe
Q 010907 467 FCMK--EVPD-FFLEELNSATRVG 487 (497)
Q Consensus 467 FVNG--eRI~-~~yleLrdGDrIG 487 (497)
++|| .... ...+.+...+.+|
T Consensus 64 ~~~g~~~~~~~g~~l~~~~~l~~g 87 (410)
T TIGR02500 64 WEEGGVLPDEEGTPLPSGTPLLVA 87 (410)
T ss_pred eECCcccccCCCCccCCCCceecc
Confidence 9999 4433 3333333334444
No 13
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.96 E-value=0.52 Score=55.53 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=50.3
Q ss_pred EEeeccceeeecCCCC--ccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCCCcee
Q 010907 403 LYIHRQSCYLFGRERR--VADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPDFFLE 478 (497)
Q Consensus 403 i~L~rqs~YlIGRd~~--vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~~~yl 478 (497)
|+| ......||+... ..||+|.-+.|=-|||.|.-.. |. .+|.+- ----|||||+.|... .
T Consensus 472 Y~i-keG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~-------g~------~~vtl~p~e~aetyVNGk~v~ep-~ 536 (1221)
T KOG0245|consen 472 YYI-KEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEG-------GN------DVVTLEPCEDAETYVNGKLVTEP-T 536 (1221)
T ss_pred EEe-ccCceecCCCCcccCCceEecchhhhhhceEEEecC-------CC------ceEEeccCCccceeEccEEcCCc-c
Confidence 445 556789998652 3699999999999999987643 31 234443 445699999999875 4
Q ss_pred ccCCCCEE
Q 010907 479 ELNSATRV 486 (497)
Q Consensus 479 eLrdGDrI 486 (497)
.|..||+|
T Consensus 537 qL~~GdRi 544 (1221)
T KOG0245|consen 537 QLRSGDRI 544 (1221)
T ss_pred eeccCCEE
Confidence 58888864
No 14
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=80.86 E-value=2.9 Score=46.47 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=60.0
Q ss_pred EEEEeecCccccceEEeeccceeeecCCCCcc--c--eecCCC--ccccCceEEEEecccccCCccccccccceeEEEe-
Q 010907 389 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVA--D--IPTDHP--SCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID- 461 (497)
Q Consensus 389 rLyVfKGGe~l~eti~L~rqs~YlIGRd~~vc--D--IvLdhP--SVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD- 461 (497)
.|-|+.|-. -.+++ ++..++|||....| | +-...| -||+..|.|-... +|. ++|..
T Consensus 432 AiAvL~Gr~---skh~m-rk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n------~Gs-------F~IkNl 494 (547)
T KOG2293|consen 432 AIAVLYGRF---SKHYM-RKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKN------DGS-------FFIKNL 494 (547)
T ss_pred eeEEEechh---hHhhh-cCcceEeeccCCCcceeeeccccCccceeeccceeEEecc------CCc-------EEeccC
Confidence 355555532 24566 56679999987533 3 333454 5799999998864 563 67777
Q ss_pred CCCCeeecCccCC-CceeccCCCCEEeceEeeccC
Q 010907 462 WHQGTFCMKEVPD-FFLEELNSATRVGRCYLSGLF 495 (497)
Q Consensus 462 STNGTFVNGeRI~-~~yleLrdGDrIG~t~Ls~lf 495 (497)
-.--.||||..+. ++.+.|++.-.|----|.|.|
T Consensus 495 GK~~I~vng~~l~~gq~~~L~~nclveIrg~~FiF 529 (547)
T KOG2293|consen 495 GKRSILVNGGELDRGQKVILKNNCLVEIRGLRFIF 529 (547)
T ss_pred cceeEEeCCccccCCceEEeccCcEEEEccceEEE
Confidence 7788999999876 567889987554433444444
No 15
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=79.10 E-value=5.1 Score=44.30 Aligned_cols=69 Identities=14% Similarity=0.018 Sum_probs=51.5
Q ss_pred eEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEE-e-CCCCeeecCccCC-Ccee
Q 010907 402 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMI-D-WHQGTFCMKEVPD-FFLE 478 (497)
Q Consensus 402 ti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLi-D-STNGTFVNGeRI~-~~yl 478 (497)
.|.|+.+ ..+|||.+ ...|.+..||++...|+-... .| ++.+ = -.|=|-|||..+. ...+
T Consensus 26 ~~~~~~~-~~~~gr~p---et~i~d~~cs~~qv~l~a~~~-----~~--------~v~~k~lg~np~~~~~~~~~~~~~~ 88 (526)
T TIGR01663 26 FIHLDAG-ALFLGRGP---ETGIRDRKCSKRQIELQADLE-----KA--------TVALKQLGVNPCGTGGLELKPGGEG 88 (526)
T ss_pred eeccCCC-ceEEccCc---ccccchhhhchhhheeeeccc-----Cc--------eEEEEEccCCCcccCceEecCCCee
Confidence 5787654 47899998 577889999999999887652 12 2333 3 7899999999765 4557
Q ss_pred ccCCCCEEe
Q 010907 479 ELNSATRVG 487 (497)
Q Consensus 479 eLrdGDrIG 487 (497)
.|.+|+.+-
T Consensus 89 ~l~~g~~l~ 97 (526)
T TIGR01663 89 ELGHGDLLE 97 (526)
T ss_pred eecCCCEEE
Confidence 899999764
No 16
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.41 E-value=3.3 Score=49.18 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=51.0
Q ss_pred eEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CCCCeeecCccCCCceecc
Q 010907 402 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQGTFCMKEVPDFFLEEL 480 (497)
Q Consensus 402 ti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNGTFVNGeRI~~~yleL 480 (497)
.|||. ...+||-.. .-||+|.--.|-.+||+|.... +|. .|+.- ..--+||||..+... +.|
T Consensus 462 vyyl~--~~tlig~~~-~~~i~l~glgi~p~h~vidI~~------dg~-------l~~~p~~~~R~~VNGs~v~~~-t~L 524 (1714)
T KOG0241|consen 462 VYYLK--DHTLIGLFK-SQDIQLSGLGIQPKHCVIDIES------DGE-------LRLTPLLNARSCVNGSLVCST-TQL 524 (1714)
T ss_pred HHhhc--Cceeecccc-CcceeeecCcccCccceeeecc------CCc-------EEecccccceeeecCceeccc-ccc
Confidence 57773 346899765 5899999999999999999864 452 33333 444899999987764 579
Q ss_pred CCCCEE
Q 010907 481 NSATRV 486 (497)
Q Consensus 481 rdGDrI 486 (497)
.+||+|
T Consensus 525 ~~GdRi 530 (1714)
T KOG0241|consen 525 WHGDRI 530 (1714)
T ss_pred ccCceE
Confidence 999975
No 17
>PF14640 TMEM223: Transmembrane protein 223
Probab=71.16 E-value=5.8 Score=37.99 Aligned_cols=65 Identities=25% Similarity=0.462 Sum_probs=42.2
Q ss_pred EEEEeecCccccceEEeeccceeeecCCCCccceecCCCcc--ccCce--EEEEecccccCCccccccccceeEEEeCCC
Q 010907 389 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSC--SKQHA--VIQFRQVEKEQPDAASMYYCMRTRMIDWHQ 464 (497)
Q Consensus 389 rLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSV--SRqHA--VIQfr~~eken~dG~~~~~~IrpYLiDSTN 464 (497)
.|++.+||+ .+.|.. ...+|+... -+++|.+-+| +++++ .|-+... | ..-+||+| ++
T Consensus 92 ~i~L~kgG~----~v~i~T--y~~fG~~~~-~~vPl~~vs~~~~r~~~~~~i~lkvk------g-----~~fyylld-~~ 152 (170)
T PF14640_consen 92 YIYLHKGGQ----NVRITT--YAPFGRRRD-FTVPLNQVSCLTHRSDAPSQIPLKVK------G-----RRFYYLLD-KR 152 (170)
T ss_pred EEEEecCCc----EEEEEE--ecccCCCCc-eEEcHHHcccchhccCCCceeEEEEC------C-----ceEEEEEe-cC
Confidence 677788885 466633 457898763 5778877777 33332 2333321 2 22479999 89
Q ss_pred CeeecCcc
Q 010907 465 GTFCMKEV 472 (497)
Q Consensus 465 GTFVNGeR 472 (497)
|+|+|-+.
T Consensus 153 G~f~n~~l 160 (170)
T PF14640_consen 153 GEFVNPRL 160 (170)
T ss_pred CcCCCHHH
Confidence 99999765
No 18
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=48.77 E-value=29 Score=41.90 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=50.5
Q ss_pred ceEEeeccceeeecCCCC-ccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CC-CCeeecCccCCCce
Q 010907 401 EPLYIHRQSCYLFGRERR-VADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WH-QGTFCMKEVPDFFL 477 (497)
Q Consensus 401 eti~L~rqs~YlIGRd~~-vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-ST-NGTFVNGeRI~~~y 477 (497)
..|.|+. +.+-||-+.. .+-|.|.-|.|--.||.|.+- +|- +.|+= ++ -=|||||..|...
T Consensus 371 ~ri~L~~-~vtEVGs~~~~~~~iqLfGP~IqprHc~it~m-------eGV-------vTvTP~~~DA~t~VnGh~isqt- 434 (1629)
T KOG1892|consen 371 KRIRLQL-SVTEVGSEKLDDNSIQLFGPGIQPRHCDITNM-------EGV-------VTVTPRSMDAETYVNGHRISQT- 434 (1629)
T ss_pred eeEEecc-CceeccccccCCcceeeeCCCCCccccchhhc-------cce-------EEecccccchhhhccceecchh-
Confidence 4577743 5678898763 146889999999999999884 351 23332 22 3589999999875
Q ss_pred eccCCCCE--Eec
Q 010907 478 EELNSATR--VGR 488 (497)
Q Consensus 478 leLrdGDr--IG~ 488 (497)
..|.+|++ ||.
T Consensus 435 tiL~~G~~v~fGa 447 (1629)
T KOG1892|consen 435 TILQSGMKVQFGA 447 (1629)
T ss_pred hhhccCCEEEecc
Confidence 35899875 564
No 19
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=33.46 E-value=27 Score=25.66 Aligned_cols=24 Identities=4% Similarity=-0.209 Sum_probs=18.7
Q ss_pred CCCeeecCccCCCceeccCCCCEE
Q 010907 463 HQGTFCMKEVPDFFLEELNSATRV 486 (497)
Q Consensus 463 TNGTFVNGeRI~~~yleLrdGDrI 486 (497)
..+.+|||+.+...-..+..||+|
T Consensus 25 ~g~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TTTEEETTEEESSTTSBESTTEEE
T ss_pred CCEEEECCEEEcCCCCCCCCcCCC
Confidence 468899999987545678888876
No 20
>PRK01777 hypothetical protein; Validated
Probab=31.05 E-value=38 Score=29.64 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=23.5
Q ss_pred EEe-CCCCeeecCccCCCceeccCCCCEEece
Q 010907 459 MID-WHQGTFCMKEVPDFFLEELNSATRVGRC 489 (497)
Q Consensus 459 LiD-STNGTFVNGeRI~~~yleLrdGDrIG~t 489 (497)
-+| +++-..|||+.+... ..|++||+|+-|
T Consensus 44 ei~~~~~~vgI~Gk~v~~d-~~L~dGDRVeIy 74 (95)
T PRK01777 44 DIDLAKNKVGIYSRPAKLT-DVLRDGDRVEIY 74 (95)
T ss_pred ccccccceEEEeCeECCCC-CcCCCCCEEEEe
Confidence 357 888899999987643 369999999854
No 21
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=28.37 E-value=1.9e+02 Score=31.57 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=48.8
Q ss_pred cceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CCC
Q 010907 386 VRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQ 464 (497)
Q Consensus 386 ~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STN 464 (497)
..|.|..+.|.-. +..+.|.... ++||-.. |||+|.=|. ++.|..... ++| +.+| +.-
T Consensus 3 ~~~Klr~Lng~L~-GrEl~Lp~G~-~tlG~~g--cDi~lpL~~----~~~~~L~i~----e~g---------i~l~~~~~ 61 (395)
T PRK15367 3 SSWKIRFLGHVLQ-GREVWLNEGN-LSLGEKG--CDICIPLTI----NEKIILREQ----ADS---------LFVDAGKA 61 (395)
T ss_pred cceeeeecCCccc-CcEEecCCCc-eeecCCC--ceEEEECCC----CCEEEEEEc----CCc---------EEEecCCc
Confidence 4677877766543 3578886654 7999853 999886543 445544432 234 4556 455
Q ss_pred CeeecCccCC-CceeccCCCC
Q 010907 465 GTFCMKEVPD-FFLEELNSAT 484 (497)
Q Consensus 465 GTFVNGeRI~-~~yleLrdGD 484 (497)
=++|||.+-+ ...++|.-.+
T Consensus 62 ~vwVnG~~~~~~~~LPl~q~I 82 (395)
T PRK15367 62 RVRVNGRRFNPNKPLPSSGVL 82 (395)
T ss_pred eEEECCEEcCCCCCCCCcchh
Confidence 6889998743 3446666654
No 22
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=24.00 E-value=62 Score=27.95 Aligned_cols=40 Identities=15% Similarity=0.020 Sum_probs=27.2
Q ss_pred eeEEEe----CCCCeeecCccCC------CceeccCCCCEEeceEeeccC
Q 010907 456 RTRMID----WHQGTFCMKEVPD------FFLEELNSATRVGRCYLSGLF 495 (497)
Q Consensus 456 rpYLiD----STNGTFVNGeRI~------~~yleLrdGDrIG~t~Ls~lf 495 (497)
-+|..| +.+|.|+||..|. ...+.+..|+..-.+.+.+-|
T Consensus 12 a~Ya~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~~~~y~~~~~~ 61 (79)
T PF11012_consen 12 APYAAEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSGTYRYQISGEN 61 (79)
T ss_pred CCccccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCeEEEEEEcCCC
Confidence 467777 8999999999865 455666666655555554443
No 23
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=22.00 E-value=41 Score=33.24 Aligned_cols=67 Identities=42% Similarity=0.518 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC--------CCCCcccccCCCCCCcccCCcccccCCCCCCCchhhhhhhccccCCcccccCCCCC
Q 010907 1 MGRNLSNHSESPVRDQ--------GGPSRRRSLSRKSPSRRERSPVLHRSSHRGSSPAREKERHSSRAKSPKRAQSQSPV 72 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (497)
|||+-+ |+|+..++ .--.+=+++++--+.++.--+..+..| |+.+| .+.++|.+-.|.|+.
T Consensus 1 mgR~rs--srsr~~~R~Re~~R~~~dRrrErsRsREr~~~rrdr~~r~~~S-r~~sp--------rr~r~per~rsRsR~ 69 (196)
T KOG3263|consen 1 MGRSRS--SRSRDDRRDRERRRSRRDRRRERSRSRERRDRRRDRYERHKES-RSRSP--------RRNRSPERKRSRSRS 69 (196)
T ss_pred CCcCcc--cccccchhhHHHhhhHHHHHHHHHhhhhhhhhhcccccccccc-cccCc--------ccccchhhhcccccc
Q ss_pred --------------CCCCCh
Q 010907 73 --------------SRSPSP 78 (497)
Q Consensus 73 --------------~~~~~~ 78 (497)
.+|+||
T Consensus 70 reRdrErdR~R~~r~rs~Sp 89 (196)
T KOG3263|consen 70 RERDRERDRERKKRRRSVSP 89 (196)
T ss_pred ccchhhhHHHHHhhhcccCC
Done!