Query 010907
Match_columns 497
No_of_seqs 250 out of 1054
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3elv_A PRE-mRNA leakage protei 100.0 6E-34 2E-38 269.5 7.9 130 349-488 27-189 (205)
2 4h87_A Kanadaptin; FHA domain 99.9 7.8E-27 2.7E-31 204.7 11.4 119 372-495 5-128 (130)
3 3els_A PRE-mRNA leakage protei 99.9 2.2E-26 7.4E-31 208.4 7.8 108 370-487 1-141 (158)
4 2jpe_A Nuclear inhibitor of pr 99.9 9.6E-23 3.3E-27 178.8 8.7 126 356-495 4-134 (140)
5 3gqs_A Adenylate cyclase-like 99.8 3.9E-19 1.3E-23 148.9 10.6 96 384-494 1-100 (106)
6 2kfu_A RV1827 PThr 22; FHA dom 99.7 1.6E-17 5.5E-22 151.3 12.4 114 363-495 20-148 (162)
7 1uht_A Expressed protein; FHA 99.7 1.2E-17 4E-22 142.0 8.1 94 383-491 8-106 (118)
8 1g3g_A Protien kinase SPK1; FH 99.7 1.1E-17 3.8E-22 151.1 6.7 109 370-495 18-145 (164)
9 2xt9_B Putative signal transdu 99.7 7.2E-17 2.5E-21 137.2 10.9 94 383-495 7-104 (115)
10 2jqj_A DNA damage response pro 99.7 7.6E-17 2.6E-21 143.2 11.3 101 385-495 15-121 (151)
11 2kb3_A Oxoglutarate dehydrogen 99.7 7.2E-17 2.5E-21 143.7 11.0 94 383-495 42-139 (143)
12 1r21_A Antigen KI-67; beta san 99.7 5.6E-17 1.9E-21 139.9 8.8 98 380-494 5-106 (128)
13 3va4_A Mediator of DNA damage 99.7 7.9E-17 2.7E-21 141.8 9.8 92 388-493 25-123 (132)
14 1gxc_A CHK2, CDS1, serine/thre 99.7 2.3E-16 7.7E-21 140.2 10.2 91 384-488 26-128 (149)
15 1mzk_A Kinase associated prote 99.7 1.9E-16 6.5E-21 139.0 8.8 94 386-493 6-116 (139)
16 1lgp_A Cell cycle checkpoint p 99.6 5.2E-16 1.8E-20 131.3 9.7 95 387-496 3-109 (116)
17 2csw_A Ubiquitin ligase protei 99.6 3.4E-16 1.2E-20 138.5 8.9 87 385-488 15-110 (145)
18 3hx1_A SLR1951 protein; P74513 99.6 3.7E-16 1.3E-20 136.8 8.7 94 386-493 9-111 (131)
19 3po8_A RV0020C protein, putati 99.6 5.6E-16 1.9E-20 128.3 8.5 87 388-495 6-96 (100)
20 1dmz_A Protein (protein kinase 99.6 1.2E-15 4.2E-20 137.2 9.3 83 401-488 18-108 (158)
21 1qu5_A Protein kinase SPK1; FH 99.6 1.1E-15 3.6E-20 141.3 8.6 89 401-494 42-145 (182)
22 2pie_A E3 ubiquitin-protein li 99.6 1.9E-15 6.6E-20 132.4 9.8 87 385-488 7-102 (138)
23 3oun_A Putative uncharacterize 99.6 3.2E-15 1.1E-19 136.3 8.6 74 401-492 78-155 (157)
24 1wln_A Afadin; beta sandwich, 99.6 1.1E-14 3.8E-19 124.7 10.4 91 389-495 13-113 (120)
25 4ejq_A Kinesin-like protein KI 99.5 1.5E-14 5.1E-19 129.9 10.5 92 389-491 40-138 (154)
26 1g6g_A Protein kinase RAD53; b 99.5 1.3E-14 4.3E-19 125.5 8.8 66 410-489 37-107 (127)
27 2ff4_A Probable regulatory pro 99.5 2.6E-14 8.9E-19 142.1 10.3 79 401-496 299-381 (388)
28 3huf_A DNA repair and telomere 99.5 2.8E-14 9.7E-19 143.1 7.1 99 388-491 2-107 (325)
29 3fm8_A Kinesin-like protein KI 99.5 1.2E-13 4.2E-18 121.1 8.7 85 389-490 28-117 (124)
30 4a0e_A YSCD, type III secretio 99.3 4.9E-12 1.7E-16 112.1 9.1 92 386-493 3-95 (123)
31 3uv0_A Mutator 2, isoform B; F 99.2 7.7E-12 2.6E-16 108.0 6.5 67 402-485 14-81 (102)
32 3i6u_A CDS1, serine/threonine- 99.2 4E-11 1.4E-15 118.1 9.2 89 387-489 9-111 (419)
33 4egx_A Kinesin-like protein KI 98.8 3.1E-08 1.1E-12 91.8 10.4 92 389-491 70-168 (184)
34 3kt9_A Aprataxin; FHA domain, 98.7 3.6E-08 1.2E-12 84.6 7.7 72 401-487 15-88 (102)
35 2brf_A Bifunctional polynucleo 98.6 6.6E-08 2.2E-12 84.3 7.7 79 402-495 21-106 (110)
36 1yj5_C 5' polynucleotide kinas 98.6 1.4E-07 4.9E-12 85.7 8.1 79 402-495 21-106 (143)
37 1wv3_A Similar to DNA segregat 98.4 3.3E-07 1.1E-11 87.5 6.1 73 402-493 86-166 (238)
38 1ujx_A Polynucleotide kinase 3 98.4 3.1E-07 1.1E-11 81.1 5.2 71 402-487 28-101 (119)
39 1wv3_A Similar to DNA segregat 63.3 13 0.00044 35.3 6.4 45 389-439 3-47 (238)
No 1
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=100.00 E-value=6e-34 Score=269.48 Aligned_cols=130 Identities=33% Similarity=0.436 Sum_probs=87.4
Q ss_pred hccCCCcccccchhhhcccccccccccCCCCCCCCCCcc-------------eEEEEeecCcc---ccceEEeeccceee
Q 010907 349 EKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVR-------------WRLYVFKAGEM---LKEPLYIHRQSCYL 412 (497)
Q Consensus 349 eKekPnFepSG~La~eSNtv~GVtLKYsEPpdArkP~~~-------------WrLyVfKGGe~---l~eti~L~rqs~Yl 412 (497)
.|++|||++||+|+.++|+++||+|+|+||+||++|... |.|+|||+|.. ..+.|.|..+++|+
T Consensus 27 ~~~~pnf~~sg~L~~~~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~~~s~y~ 106 (205)
T 3elv_A 27 IDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYL 106 (205)
T ss_dssp -------------------------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECSSCSEEE
T ss_pred ccccCCCcccccchhhhcccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEecCCCcee
Confidence 369999999999999999999999999999999999653 66999998862 22589998889999
Q ss_pred ecCCC--------------CccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCC-C
Q 010907 413 FGRER--------------RVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPD-F 475 (497)
Q Consensus 413 IGRd~--------------~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~-~ 475 (497)
|||++ .+|||+|+||+||++||+|+|... .+ .+.|||+| |||||||||++|. .
T Consensus 107 IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~-----~~-----~~~~~l~DLgStNGTfVNG~rI~~~ 176 (205)
T 3elv_A 107 VGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV-----RG-----ILKCYVMDLDSSNGTCLNNVVIPGA 176 (205)
T ss_dssp EEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEE-----TT-----EEEEEEEECSCSSCCEETTEECCBT
T ss_pred ecccccccccccccccccCccceEEeCCCCCCcccEEEEEecC-----CC-----ceeEEEEeCCCCCCCeECCEECCCC
Confidence 99995 369999999999999999999752 11 23589999 9999999999987 4
Q ss_pred ceeccCCCCEEec
Q 010907 476 FLEELNSATRVGR 488 (497)
Q Consensus 476 ~yleLrdGDrIG~ 488 (497)
.++.|.+||+|-.
T Consensus 177 ~~~~L~~GD~I~f 189 (205)
T 3elv_A 177 RYIELRSGDVLTL 189 (205)
T ss_dssp SCEECCTTCEEES
T ss_pred ceeECCCCCEEEE
Confidence 6688999987543
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.94 E-value=7.8e-27 Score=204.69 Aligned_cols=119 Identities=24% Similarity=0.261 Sum_probs=93.9
Q ss_pred ccccCCCCCCCCCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccc
Q 010907 372 TLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASM 451 (497)
Q Consensus 372 tLKYsEPpdArkP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~ 451 (497)
...|.+|+||.+|...|+|+|+|+|..+ ..+.|..+++|+|||++ .|||+|+||+||++||+|+|+..... +...
T Consensus 5 ~ppy~~P~wa~~p~~~~~L~v~k~g~~~-~~~~L~~~~~~~IGR~~-~~di~l~~~~VSr~HA~I~~r~~~~~---~~~~ 79 (130)
T 4h87_A 5 APPYQEPPWGGPATAPYSLETLKGGTIL-GTRSLKGTSYCLFGRLS-GCDVCLEHPSVSRYHAVLQHRASGPD---GECD 79 (130)
T ss_dssp CCSCCCCTTBCCCCSCCEEEEEETTEEE-EEEECTTCSEEEEESST-TSSEECCCTTSCSSCEEEEEBCCCCC---C---
T ss_pred CcCCCCCCCccCCCCCEEEEEEECCeee-eeEEeCCCceEEEcCCc-CCCEEeCCCCcchhcEEEEEecccCc---ccee
Confidence 4569999999999999999999999876 58999888999999998 59999999999999999999753211 0000
Q ss_pred cccceeEEEe--CCCCeeecCccCC-CceeccCCCCE--EeceEeeccC
Q 010907 452 YYCMRTRMID--WHQGTFCMKEVPD-FFLEELNSATR--VGRCYLSGLF 495 (497)
Q Consensus 452 ~~~IrpYLiD--STNGTFVNGeRI~-~~yleLrdGDr--IG~t~Ls~lf 495 (497)
...-.|||+| |||||||||++|. ..++.|.+||. ||.....+.|
T Consensus 80 ~~~~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl 128 (130)
T 4h87_A 80 SNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFIL 128 (130)
T ss_dssp ---CCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEETTCSEEEEE
T ss_pred ccCCcceEeeCCCCCceEECCEECCCCceeECCCCCEEEECCceEEEEE
Confidence 1123589999 9999999999986 56788999985 6654444333
No 3
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-26 Score=208.42 Aligned_cols=108 Identities=32% Similarity=0.406 Sum_probs=87.0
Q ss_pred ccccccCCCCCCCCCCcc-------------eEEEEeecCcc---ccceEEeeccceeeecCCC--------------Cc
Q 010907 370 GVTLLFNEPPDARKPSVR-------------WRLYVFKAGEM---LKEPLYIHRQSCYLFGRER--------------RV 419 (497)
Q Consensus 370 GVtLKYsEPpdArkP~~~-------------WrLyVfKGGe~---l~eti~L~rqs~YlIGRd~--------------~v 419 (497)
||+|||+||+||.+|... |.|+||++|.. ..+.+.|..+++|+|||++ ..
T Consensus 1 ~~~l~~~ep~~a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~ 80 (158)
T 3els_A 1 GAMGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVV 80 (158)
T ss_dssp ----CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCC
T ss_pred CceeEecCCccccCCchhhhccccCcccCCceEEEEEeCCccCcccceEEEecCCCceEecccccccccccccccccccc
Confidence 789999999999999544 66999999862 2358999999999999995 36
Q ss_pred cceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCC-CceeccCCCCEEe
Q 010907 420 ADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPD-FFLEELNSATRVG 487 (497)
Q Consensus 420 cDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~-~~yleLrdGDrIG 487 (497)
|||+|+|++||++||+|+|... + ..+.|||+| |||||||||++|. ..++.|.+||+|.
T Consensus 81 ~Di~l~~~~VSr~HA~I~~~~~------~----~~~~~~l~Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~ 141 (158)
T 3els_A 81 ADIGIPEETSSKQHCVIQFRNV------R----GILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLT 141 (158)
T ss_dssp CSEEECCTTSCSSCEEEEEEEE------T----TEEEEEEEECSCSSCCEETTEECCTTCCEECCTTEEEE
T ss_pred CCEEcCCCCCCcccEEEEEEcc------C----CeeEEEEEeCCCCCccEECCEEcCCCceEEcCCCCEEE
Confidence 9999999999999999999752 1 134589999 9999999999986 4568899998654
No 4
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.87 E-value=9.6e-23 Score=178.84 Aligned_cols=126 Identities=28% Similarity=0.379 Sum_probs=100.4
Q ss_pred ccccchhhhcccccccccccCCCCCCCCCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceE
Q 010907 356 ELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAV 435 (497)
Q Consensus 356 epSG~La~eSNtv~GVtLKYsEPpdArkP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAV 435 (497)
+.++.|+.++|.... +++|.+|.||..|...|.|+|++++... ..|.|.....|+|||+...|||+|+|+.||++||+
T Consensus 4 g~~~~~~~~~~~~~~-~~~~~~P~~a~~p~~~~~L~v~~g~~~g-~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~ 81 (140)
T 2jpe_A 4 GSPNSMAAAVNSGSS-LPLFDCPTWAGKPPPGLHLDVVKGDKLI-EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAA 81 (140)
T ss_dssp -----CCCCCCSSSC-CCSCCCCSSBCCCCSSCBEEEESSSSEE-EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBE
T ss_pred CcCCcccccccccCC-ccccCCCCcccCCCcCEEEEEEcCCCcc-eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheE
Confidence 456778888888866 5699999999999999999999988655 57888665679999998459999999999999999
Q ss_pred EEEecccccCCccccccccceeEEEe--CCCCeeecCccCC-CceeccCCCC--EEeceEeeccC
Q 010907 436 IQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPD-FFLEELNSAT--RVGRCYLSGLF 495 (497)
Q Consensus 436 IQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~-~~yleLrdGD--rIG~t~Ls~lf 495 (497)
|.+... ++ .|||+| |+|||||||++|. ...+.|.+|| .||.+.+.+.|
T Consensus 82 i~~~~~-----~~-------~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G~~~~~f~~ 134 (140)
T 2jpe_A 82 LVYHKH-----LK-------RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTL 134 (140)
T ss_dssp EEEBSS-----SC-------CEEEECCSCSSCEESSSCEECSSSCCEECTTCCBBCSSCCCCBCC
T ss_pred EEEECC-----CC-------cEEEEECCCCCCeEECCEECCCCccEECCCCCEEEECCceEEEEE
Confidence 999741 23 489999 9999999999976 3346688776 57887776665
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.79 E-value=3.9e-19 Score=148.91 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=76.9
Q ss_pred CCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--
Q 010907 384 PSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-- 461 (497)
Q Consensus 384 P~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-- 461 (497)
|+..|.|+|+.|.... ..|.|.....|+|||++..|||+|+++.||++||.|.+.. +| .|||.|
T Consensus 1 p~~~~~L~v~~G~~~g-~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~------~~-------~~~l~Dl~ 66 (106)
T 3gqs_A 1 QPSRFLLKVLAGANIG-AEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN------DN-------SVLIEDLG 66 (106)
T ss_dssp --CEEEEEECC-CCTT-CEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT------TS-------CEEEEECS
T ss_pred CCceEEEEEEeCCCCc-EEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC------CC-------cEEEEECc
Confidence 4568999999987655 6899976667999999844999999999999999999963 24 489999
Q ss_pred CCCCeeecCccCCCceeccCCCC--EEeceEeecc
Q 010907 462 WHQGTFCMKEVPDFFLEELNSAT--RVGRCYLSGL 494 (497)
Q Consensus 462 STNGTFVNGeRI~~~yleLrdGD--rIG~t~Ls~l 494 (497)
|+|||||||++|... +.|.+|| .||.+.|.+.
T Consensus 67 S~nGt~vng~~i~~~-~~L~~Gd~i~~G~~~~~~~ 100 (106)
T 3gqs_A 67 SKNGVIVEGRKIEHQ-STLSANQVVALGTTLFLLV 100 (106)
T ss_dssp CSSCCEETTEECSSE-EECCTTCCEEETTEEEEEE
T ss_pred CCCCeEECCEECCCC-eECCCCCEEEECCEEEEEE
Confidence 999999999998863 4688887 5787776543
No 6
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.73 E-value=1.6e-17 Score=151.29 Aligned_cols=114 Identities=23% Similarity=0.244 Sum_probs=87.9
Q ss_pred hhcccccccccccCCCCC-----------CCCCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCcccc
Q 010907 363 AETNRFRGVTLLFNEPPD-----------ARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSK 431 (497)
Q Consensus 363 ~eSNtv~GVtLKYsEPpd-----------ArkP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSR 431 (497)
+.++++....|++.+|.. +..|...|.|+|..|.... ..|.|. ...++|||+.. |||+|+++.||+
T Consensus 20 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~L~v~~G~~~g-~~~~L~-~~~~~IGR~~~-~di~l~d~~VSr 96 (162)
T 2kfu_A 20 ETTSVFRADFLSELDAPAQAGTESAVSGVEGLPPGSALLVVKRGPNAG-SRFLLD-QAITSAGRHPD-SDIFLDDVTVSR 96 (162)
T ss_dssp SSCCCCSTTTTSSCSSCCCCCCCCTTCSSSSCCSSCCEEEEEESTTCS-CEEETT-SSEEEEESCSS-SSEESTTTSSSS
T ss_pred CcceeecccccccccCCCccccccCccccccCCCccEEEEEEeCCCCC-eEEEEC-CCCEEECCCCC-CCEEECCCCcCh
Confidence 455666666677666542 1234456899998886544 578885 56799999984 999999999999
Q ss_pred CceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCCCceeccCCCC--EEeceEeeccC
Q 010907 432 QHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPDFFLEELNSAT--RVGRCYLSGLF 495 (497)
Q Consensus 432 qHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~~~yleLrdGD--rIG~t~Ls~lf 495 (497)
+||.|.+.. + .|||.| |+|||||||++|.. +.|.+|| .||.+.|.++.
T Consensus 97 ~HA~I~~~~-------~-------~~~l~DlgS~NGT~VNg~~i~~--~~L~~GD~I~iG~~~l~f~~ 148 (162)
T 2kfu_A 97 RHAEFRLEN-------N-------EFNVVDVGSLNGTYVNREPVDS--AVLANGDEVQIGKFRLVFLT 148 (162)
T ss_dssp CSEEEEEET-------T-------EEEEECCCCSSCEEETTBCCSE--EECCSSCEEEETTEEEEEEC
T ss_pred hhEEEEEEC-------C-------EEEEEECCCCCCeEECCEEcce--EECCCCCEEEECCEEEEEEe
Confidence 999999963 3 489999 99999999999984 5688887 58888776654
No 7
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.71 E-value=1.2e-17 Score=142.03 Aligned_cols=94 Identities=19% Similarity=0.115 Sum_probs=74.8
Q ss_pred CCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-
Q 010907 383 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID- 461 (497)
Q Consensus 383 kP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD- 461 (497)
.+...|.|.++.+.... ..+.|.....|+|||.+..|||+|+++.||++||.|.+.. + .|||+|
T Consensus 8 ~~~p~l~L~v~~g~~~g-~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-------~-------~~~l~Dl 72 (118)
T 1uht_A 8 MVTPSLRLVFVKGPREG-DALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-------G-------NWVIQDL 72 (118)
T ss_dssp CCSCEEEEEESSSTTTT-CBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-------S-------SEEEECC
T ss_pred CCCCeEEEEEEeCCCCC-cEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC-------C-------EEEEEEC
Confidence 33457899998876544 5788865567999999335999999999999999999853 3 489999
Q ss_pred -CCCCeeecCccCCC-ceeccCCCCE--EeceEe
Q 010907 462 -WHQGTFCMKEVPDF-FLEELNSATR--VGRCYL 491 (497)
Q Consensus 462 -STNGTFVNGeRI~~-~yleLrdGDr--IG~t~L 491 (497)
|+|||||||+++.. ..+.|.+||. ||.+.+
T Consensus 73 ~S~nGT~vng~~l~~~~~~~L~~gd~i~lG~~~~ 106 (118)
T 1uht_A 73 GSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTS 106 (118)
T ss_dssp CCSSCCEESSSBCCTTCEEECCTTEEEEETTTEE
T ss_pred CCCCCeEECCEECCCCCeEEcCCCCEEEECCeEE
Confidence 99999999999863 4578999985 676554
No 8
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.70 E-value=1.1e-17 Score=151.09 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=83.8
Q ss_pred ccccccCCCCCCCCCCcceEEEEeecCccccceEEeecc----------ceeeecCCCCccceecCCC-ccccCceEEEE
Q 010907 370 GVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQ----------SCYLFGRERRVADIPTDHP-SCSKQHAVIQF 438 (497)
Q Consensus 370 GVtLKYsEPpdArkP~~~WrLyVfKGGe~l~eti~L~rq----------s~YlIGRd~~vcDIvLdhP-SVSRqHAVIQf 438 (497)
.+.++|+. ++..+...|.|+|+.|...+ ..|.|... ..|+|||++. |||+|+++ .||++||.|.+
T Consensus 18 ~~i~~~~~--e~~~~~~~~~L~v~~G~~~g-~~~~l~~~~v~~~~~~~~~~~~IGR~~~-~di~l~d~~~vSr~Ha~I~~ 93 (164)
T 1g3g_A 18 FLIEKFSQ--EQIGENIVCRVICTTGQIPI-RDLSADISQVLKEKRSIKKVWTFGRNPA-CDYHLGNISRLSNKHFQILL 93 (164)
T ss_dssp HHHHHHHC--CCCCSSCCEEEECSSSSSCC-EEECCCHHHHHHCSSSCCEEEEEESSSS-SSEECCCCTTTTSSCEEEEE
T ss_pred eeeeeccc--cccCCCccEEEEEecCCCCC-eEEEeccccccccccccCCcEEECCCCC-CCEEeCCcCCcChhHEEEEE
Confidence 34566663 56667778999999987655 46777532 3799999985 99999998 69999999999
Q ss_pred ecccccCCccccccccceeEEEe-CCCCeeecCccCC-CceeccCCCCE--Eece----EeeccC
Q 010907 439 RQVEKEQPDAASMYYCMRTRMID-WHQGTFCMKEVPD-FFLEELNSATR--VGRC----YLSGLF 495 (497)
Q Consensus 439 r~~eken~dG~~~~~~IrpYLiD-STNGTFVNGeRI~-~~yleLrdGDr--IG~t----~Ls~lf 495 (497)
.. +| .|||.| |+|||||||++|. ...+.|.+||. ||.+ .+.|+|
T Consensus 94 ~~------~g-------~~~l~DlS~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~ 145 (164)
T 1g3g_A 94 GE------DG-------NLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVI 145 (164)
T ss_dssp CS------TT-------CEEEEECCSSCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEE
T ss_pred CC------CC-------CEEEEECCCCCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEE
Confidence 52 34 489999 9999999999987 45678999985 6764 345554
No 9
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.70 E-value=7.2e-17 Score=137.16 Aligned_cols=94 Identities=23% Similarity=0.248 Sum_probs=75.9
Q ss_pred CCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-
Q 010907 383 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID- 461 (497)
Q Consensus 383 kP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD- 461 (497)
.|...|.|.|+.+.... ..+.|. ...++|||.+ .|||+|+++.||++||.|.+.. + .|||.|
T Consensus 7 ~p~~~~~L~v~~g~~~g-~~~~l~-~~~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~~-------~-------~~~l~Dl 69 (115)
T 2xt9_B 7 LPSGSALLVVKRGPNAG-SRFLLD-QPTTSAGRHP-DSDIFLDDVTVSRRHAEFRLEG-------G-------EFQVVDV 69 (115)
T ss_dssp -CCSCEEEEEEESTTTT-CEEEEC-SSEEEEESST-TSSEECCSTTSCSSCEEEEEET-------T-------EEEEEEC
T ss_pred CCCCcEEEEEEeCCCCC-eEEEEC-CCCEEECCCC-CCCEEeCCcccChhheEEEEEC-------C-------EEEEEEC
Confidence 34566889998886544 578885 4579999998 4999999999999999999963 3 489999
Q ss_pred -CCCCeeecCccCCCceeccCCCC--EEeceEeeccC
Q 010907 462 -WHQGTFCMKEVPDFFLEELNSAT--RVGRCYLSGLF 495 (497)
Q Consensus 462 -STNGTFVNGeRI~~~yleLrdGD--rIG~t~Ls~lf 495 (497)
|+|||||||+++.. +.|.+|| .||.+.|.+..
T Consensus 70 ~S~nGt~vng~~i~~--~~L~~gd~i~iG~~~l~~~~ 104 (115)
T 2xt9_B 70 GSLNGTYVNREPVDS--AVLANGDEVQIGKFRLVFLT 104 (115)
T ss_dssp SCSSCEEETTEECSE--EEECTTCEEEETTEEEEEEC
T ss_pred CCCCCeEECCEEcce--EECCCCCEEEECCEEEEEEe
Confidence 99999999999884 5688887 57877776544
No 10
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.69 E-value=7.6e-17 Score=143.25 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=72.6
Q ss_pred Ccce-EEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccC-CccccccccceeEEEe-
Q 010907 385 SVRW-RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQ-PDAASMYYCMRTRMID- 461 (497)
Q Consensus 385 ~~~W-rLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken-~dG~~~~~~IrpYLiD- 461 (497)
...| .|+++..+. +..+.|..+..|+|||.+ .|||+|+++.||++||.|.+......+ .++ .|||.|
T Consensus 15 ~~~~~~L~~~~~~~--g~~~~l~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~-------~~~l~Dl 84 (151)
T 2jqj_A 15 YTCLGHLVNLIPGK--EQKVEITNRNVTTIGRSR-SCDVILSEPDISTFHAEFHLLQMDVDNFQRN-------LINVIDK 84 (151)
T ss_dssp CCEEEEEEEEETTE--EEEEEEECCSCEEEESST-TSSEECCCTTCCTTSEEEEEEEEEETTEEEE-------EEEEEEC
T ss_pred CCceEEEEEecCCC--ceEEEEcCCCeEEeCCCC-CCCEEECCCCCccccCEEEEecccCCcCcCC-------EEEEEEC
Confidence 3456 455555432 357888655779999998 599999999999999999995321100 122 589999
Q ss_pred CCCCeeecCccCCCceeccCCCCE--Eece-EeeccC
Q 010907 462 WHQGTFCMKEVPDFFLEELNSATR--VGRC-YLSGLF 495 (497)
Q Consensus 462 STNGTFVNGeRI~~~yleLrdGDr--IG~t-~Ls~lf 495 (497)
|+|||||||++|....+.|.+||. ||.+ .+.+.|
T Consensus 85 S~NGT~VNg~~i~~~~~~L~~GD~I~lG~~~~~~f~~ 121 (151)
T 2jqj_A 85 SRNGTFINGNRLVKKDYILKNGDRIVFGKSCSFLFKY 121 (151)
T ss_dssp CSSCEEETTEECCSSCEEECSSEEEEETTTEEEEEEE
T ss_pred CCCCeEECCEEcCCCceECCCCCEEEECCCcEEEEEE
Confidence 999999999998743567999975 6762 444444
No 11
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.69 E-value=7.2e-17 Score=143.72 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-
Q 010907 383 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID- 461 (497)
Q Consensus 383 kP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD- 461 (497)
.|...|.|.|+.|.... ..|.|. ...++|||++. |||+|+++.||++||.|.+.. | .|||.|
T Consensus 42 ~p~~~~~L~v~~G~~~g-~~~~L~-~~~~~IGR~~~-~di~l~d~~VSr~Ha~I~~~~-------~-------~~~l~Dl 104 (143)
T 2kb3_A 42 LPAGSALLVVKRGPNAG-ARFLLD-QPTTTAGRHPE-SDIFLDDVTVSRRHAEFRINE-------G-------EFEVVDV 104 (143)
T ss_dssp CSSSCEEEEEEESTTTT-CEEEEC-SSEEEESSCTT-CSBCCCCSSCCSSSEEEEEET-------T-------EEEEEES
T ss_pred CCCccEEEEEEeCCCCC-eEEEeC-CCCeeccCCCC-CCEEeCCCCcChhhEEEEEEC-------C-------EEEEEEC
Confidence 45567899999886554 578885 56799999985 999999999999999999953 3 489999
Q ss_pred -CCCCeeecCccCCCceeccCCCC--EEeceEeeccC
Q 010907 462 -WHQGTFCMKEVPDFFLEELNSAT--RVGRCYLSGLF 495 (497)
Q Consensus 462 -STNGTFVNGeRI~~~yleLrdGD--rIG~t~Ls~lf 495 (497)
|+|||||||++|.. +.|.+|| .||.+.|.++.
T Consensus 105 gS~NGT~VNg~~i~~--~~L~~GD~I~iG~~~l~f~~ 139 (143)
T 2kb3_A 105 GSLNGTYVNREPRNA--QVMQTGDEIQIGKFRLVFLA 139 (143)
T ss_dssp CCSSCCEETTEECSE--EECCTTEEEEETTEEEEEEE
T ss_pred CCcCCeEECCEEcce--EECCCCCEEEECCEEEEEEe
Confidence 99999999999984 5788887 57877776543
No 12
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.68 E-value=5.6e-17 Score=139.88 Aligned_cols=98 Identities=20% Similarity=0.103 Sum_probs=73.6
Q ss_pred CCCCCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEE
Q 010907 380 DARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRM 459 (497)
Q Consensus 380 dArkP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYL 459 (497)
+.......+.|+++.++...+..|.|. ...|+|||+.. |||+|+++.||++||.|.+.. + .|||
T Consensus 5 ~~g~~~~~~~L~v~~~~~~~g~~~~l~-~~~~~IGR~~~-~di~l~d~~VSr~Ha~i~~~~-------~-------~~~l 68 (128)
T 1r21_A 5 FPGGMWPTRRLVTIKRSGVDGPHFPLS-LSTCLFGRGIE-CDIRIQLPVVSKQHCKIEIHE-------Q-------EAIL 68 (128)
T ss_dssp ----CCCCEEEEEEEETTEEEEEEECC-SSEEEEESSTT-SSEECCCTTSCTTCEEEEECS-------S-------CEEE
T ss_pred cCCCCCCceEEEEEeCCCCCceEEEEC-CCCEEECCCCC-CCEEECCCCCChhHEEEEEEC-------C-------EEEE
Confidence 333333456888888533334578885 46799999985 999999999999999999953 3 4899
Q ss_pred Ee--CCCCeeecCccCCCceeccCCCCE--EeceEeecc
Q 010907 460 ID--WHQGTFCMKEVPDFFLEELNSATR--VGRCYLSGL 494 (497)
Q Consensus 460 iD--STNGTFVNGeRI~~~yleLrdGDr--IG~t~Ls~l 494 (497)
.| |+|||||||++|.. .+.|.+||. ||.+.|.+.
T Consensus 69 ~Dl~S~nGt~vNg~~i~~-~~~L~~Gd~i~iG~~~~~~~ 106 (128)
T 1r21_A 69 HNFSSTNPTQVNGSVIDE-PVRLKHGDVITIIDRSFRYE 106 (128)
T ss_dssp CCCCSSSCCEETTEECSS-CEECCTTEEEECSSCEEEEE
T ss_pred EECCCCCCEEECCEECCC-cEEcCCCCEEEECCEEEEEE
Confidence 99 99999999999885 357899875 676666543
No 13
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.68 E-value=7.9e-17 Score=141.78 Aligned_cols=92 Identities=20% Similarity=0.139 Sum_probs=72.7
Q ss_pred eEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCC
Q 010907 388 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQG 465 (497)
Q Consensus 388 WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNG 465 (497)
..|.|+.++...+..|.|. ...++|||++. |||+|+++.||++||.|.+... ++ .|||.| |+||
T Consensus 25 g~L~v~~g~~~~g~~~~L~-~~~~~IGR~~~-~di~l~d~~VSr~HA~i~~~~~-----~~-------~~~l~Dl~S~NG 90 (132)
T 3va4_A 25 GQLRLFSGTHGPERDFPLY-LGKNVVGRSPD-CSVALPFPSISKQHAVIEISAW-----NK-------APILQDCGSLNG 90 (132)
T ss_dssp EEEEECCBTTBSCEEEEEC-SEEEEEESSTT-SSEECCCTTSCTTCEEEEECST-----TS-------CCEEEECSCSSC
T ss_pred EEEEEEeCCCCCceEEEEC-CCCEEEccCCC-CCEEeCCCCcChhHEEEEEEcC-----CC-------EEEEEECCCCCC
Confidence 4788998876233678885 45689999985 9999999999999999998631 23 489999 9999
Q ss_pred eeecCccC---CCceeccCCCCE--EeceEeec
Q 010907 466 TFCMKEVP---DFFLEELNSATR--VGRCYLSG 493 (497)
Q Consensus 466 TFVNGeRI---~~~yleLrdGDr--IG~t~Ls~ 493 (497)
|||||++| ....+.|.+||. ||.+.|.+
T Consensus 91 T~vNg~~i~l~~~~~~~L~~GD~I~lG~~~l~f 123 (132)
T 3va4_A 91 TQIVKPPRVLPPGVSHRLRDQELILFADFPCQY 123 (132)
T ss_dssp EEETTTTEEECTTCCEECCTTCEEEETTEEEEE
T ss_pred eEECCEEcccCCCCEEECCCCCEEEECCEEEEE
Confidence 99999984 234567999984 77777654
No 14
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.66 E-value=2.3e-16 Score=140.16 Aligned_cols=91 Identities=24% Similarity=0.299 Sum_probs=67.2
Q ss_pred CCcce-EEEEeecCccccceEEeeccceeeecCCCCccceecCCCc---------cccCceEEEEecccccCCccccccc
Q 010907 384 PSVRW-RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS---------CSKQHAVIQFRQVEKEQPDAASMYY 453 (497)
Q Consensus 384 P~~~W-rLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPS---------VSRqHAVIQfr~~eken~dG~~~~~ 453 (497)
+...| +|+++.++. ..|.|. ...|+|||++ .|||+|+++. ||++||.|.+... + ..
T Consensus 26 ~~~~w~~L~~~~~~~---~~i~L~-~~~~~IGR~~-~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~------~---~~ 91 (149)
T 1gxc_A 26 TPAPWARLWALQDGF---ANLECV-NDNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVG------P---KN 91 (149)
T ss_dssp ---CCEEEEECSTTC---CCEEEC-SSEEEEESST-TCSEECCCGGGGGSSGGGGSCTTCEEEEEEEC------T---TS
T ss_pred CCCeeEEEEEcCCCC---ceEEEC-CCCEEecCCC-CCCEEECCccccccccCCcCchhheEEEEECC------C---Cc
Confidence 34567 555555442 358885 5679999998 5999999995 9999999998752 1 01
Q ss_pred cceeEEEe-CCCCeeecCccCC-CceeccCCCCEEec
Q 010907 454 CMRTRMID-WHQGTFCMKEVPD-FFLEELNSATRVGR 488 (497)
Q Consensus 454 ~IrpYLiD-STNGTFVNGeRI~-~~yleLrdGDrIG~ 488 (497)
...|||.| |+|||||||++|. ...+.|.+||.|..
T Consensus 92 ~~~~~i~D~StNGT~VNg~~i~~~~~~~L~~GD~I~l 128 (149)
T 1gxc_A 92 SYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIAL 128 (149)
T ss_dssp SEEEEEEECCSSCEEETTEECCTTCEEECCTTEEEEE
T ss_pred eeEEEEEECCCCCeEECCEECCCCCeEECCCCCEEEE
Confidence 23589999 9999999999987 45678999986543
No 15
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.65 E-value=1.9e-16 Score=139.00 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=74.6
Q ss_pred cceEEEEeecCccccceEEeecc----ceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe
Q 010907 386 VRWRLYVFKAGEMLKEPLYIHRQ----SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID 461 (497)
Q Consensus 386 ~~WrLyVfKGGe~l~eti~L~rq----s~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD 461 (497)
..|.|.|+.|.... ..|.|... ..|+|||++. |||+|+++.||++||.|.+.. ++. .|||.|
T Consensus 6 ~~~~L~v~~G~~~g-~~~~l~~~~~~~~~~~IGR~~~-~di~l~d~~VSr~Ha~i~~~~------~~~------~~~l~D 71 (139)
T 1mzk_A 6 SWLFLEVIAGPAIG-LQHAVNSTSSSKLPVKLGRVSP-SDLALKDSEVSGKHAQITWNS------TKF------KWELVD 71 (139)
T ss_dssp EEEEEEECSSTTCS-CEEEECTTCSTTCSEEEESSSS-CSEECCCTTSSSEEEEEEEET------TTT------EEEEEE
T ss_pred CeEEEEEEeCCCCC-eEEEecCCCCccceEEeeCCCC-CCEEeCCCCCChHHcEEEEEC------CCC------EEEEEE
Confidence 45789998876554 57888653 2689999985 999999999999999999974 221 489999
Q ss_pred --CCCCeeecCccCCC---------ceeccCCCCE--EeceEeec
Q 010907 462 --WHQGTFCMKEVPDF---------FLEELNSATR--VGRCYLSG 493 (497)
Q Consensus 462 --STNGTFVNGeRI~~---------~yleLrdGDr--IG~t~Ls~ 493 (497)
|+|||||||+++.. ..+.|.+||. ||.+.|.+
T Consensus 72 lgS~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~~~ 116 (139)
T 1mzk_A 72 MGSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVY 116 (139)
T ss_dssp TTCSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSSSCEEE
T ss_pred CCCCCCEEECCEECcCcccccccCCceEECCCCCEEEECCEEEEE
Confidence 99999999999873 4578999985 66666543
No 16
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.64 E-value=5.2e-16 Score=131.30 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=70.5
Q ss_pred ce-EEEEeecCccccceEEeeccceeeecCCCCccceecCC-CccccCceEEEEecccccCCccccccccceeEEEe-CC
Q 010907 387 RW-RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDH-PSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WH 463 (497)
Q Consensus 387 ~W-rLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdh-PSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-ST 463 (497)
.| +|+++.++... ..+.|. ...++|||.+ .|||+|++ +.||++||.|.+... +| .|||.| |+
T Consensus 3 ~wg~L~~~~~~~~~-~~~~l~-~~~~~iGR~~-~~di~l~~~~~vSr~Ha~i~~~~~-----~~-------~~~l~D~S~ 67 (116)
T 1lgp_A 3 PWGRLLRLGAEEGE-PHVLLR-KREWTIGRRR-GCDLSFPSNKLVSGDHCRIVVDEK-----SG-------QVTLEDTST 67 (116)
T ss_dssp CCEEECCTTCCSSS-CCEEEC-SSEEEEESST-TSSEECTTCTTSCTTCEEEEECTT-----TC-------CEEEEECSS
T ss_pred CEEEEEEeCCCCCc-cEEEEC-CCCEEECCCC-CCCEEeCCCCCCChhHeEEEEECC-----CC-------eEEEEECCc
Confidence 36 55555543322 468885 5679999998 49999987 499999999999631 24 489999 99
Q ss_pred CCeeecCccCCC-ceeccCCCCE--Eece------EeeccCC
Q 010907 464 QGTFCMKEVPDF-FLEELNSATR--VGRC------YLSGLFP 496 (497)
Q Consensus 464 NGTFVNGeRI~~-~yleLrdGDr--IG~t------~Ls~lf~ 496 (497)
|||||||++|.. ..+.|.+||. ||.. .+.++|-
T Consensus 68 NGt~vng~~l~~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~ 109 (116)
T 1lgp_A 68 SGTVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYE 109 (116)
T ss_dssp SCCCCCCCCCCCSSCCCCCTTCEEEEECCSSCGGGCEEEECC
T ss_pred CCcEECCEEcCCCCcEECCCCCEEEEeccCCCCCceEEEEEE
Confidence 999999999873 4578999985 5654 3556663
No 17
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.64 E-value=3.4e-16 Score=138.50 Aligned_cols=87 Identities=13% Similarity=0.097 Sum_probs=68.9
Q ss_pred CcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCc----cccCceEEEEecccccCCccccccccceeEEE
Q 010907 385 SVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS----CSKQHAVIQFRQVEKEQPDAASMYYCMRTRMI 460 (497)
Q Consensus 385 ~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPS----VSRqHAVIQfr~~eken~dG~~~~~~IrpYLi 460 (497)
...|.|. ..+. .. ..+.|.....|+|||++ .|||+|+++. ||++||.|.+.. +| .|||+
T Consensus 15 ~~~w~L~-~~G~-~~-~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~------~g-------~~~l~ 77 (145)
T 2csw_A 15 GRSWCLR-RVGM-SA-GWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP------EG-------QWTIM 77 (145)
T ss_dssp SEEEEEC-CTTC-SC-CBEECCTTCCEEEESST-TSSEECCCSSCGGGSCTTCEEEEECT------TS-------CEEEE
T ss_pred CccEEEE-EeCC-CC-CeEEeCCCCcEEECCCC-CCCEEECCCCcCCCCChhHeEEEEcC------CC-------eEEEE
Confidence 4578877 3333 23 36888677789999998 5999999999 999999999953 34 48999
Q ss_pred e--CCCCeeecCccCCC-ceeccCCCCE--Eec
Q 010907 461 D--WHQGTFCMKEVPDF-FLEELNSATR--VGR 488 (497)
Q Consensus 461 D--STNGTFVNGeRI~~-~yleLrdGDr--IG~ 488 (497)
| |+|||||||++|.. ..+.|.+||. ||.
T Consensus 78 Dl~S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 78 DNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp BSSCSSCEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred ECCCCCCeEECCEECCCCccEECCCCCEEEECC
Confidence 9 99999999999873 4567888875 666
No 18
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.64 E-value=3.7e-16 Score=136.79 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=70.0
Q ss_pred cceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe----
Q 010907 386 VRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID---- 461 (497)
Q Consensus 386 ~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD---- 461 (497)
..|.|+++.++... ..|.|. ...|+|||.+. |||+|+++.||++||.|.+... .+| ...|||+|
T Consensus 9 ~~~~~lvv~~~~~~-~~~~l~-~~~~~IGR~~~-~di~l~d~~VSr~Ha~I~~~~~----~~g-----~~~~~l~Dl~~~ 76 (131)
T 3hx1_A 9 LQEHILIILDDAGR-REVLLT-ETFYTIGRSPR-ADIRIKSQFVSRIHAVLVRKSS----DDV-----QAAYRIIDGDED 76 (131)
T ss_dssp CCEEEEEEEETTEE-EEEEEC-SSEEEEESSTT-SSEECCCSSSCTTCEEEEEC---------------CCEEEEESCTT
T ss_pred CcceEEEEECCCCc-EEEEEC-CCCEEECCCCC-CCEEECCCCcChhheEEEEEcc----CCC-----ceEEEEEECCCC
Confidence 35667777776433 578884 46799999985 9999999999999999998632 122 12478988
Q ss_pred ---CCCCeeecCccCCCceeccCCCCE--EeceEeec
Q 010907 462 ---WHQGTFCMKEVPDFFLEELNSATR--VGRCYLSG 493 (497)
Q Consensus 462 ---STNGTFVNGeRI~~~yleLrdGDr--IG~t~Ls~ 493 (497)
|+|||||||++|.. +.|.+||. ||.+.+.+
T Consensus 77 ~~~S~NGT~vNg~~i~~--~~L~~GD~I~iG~~~~~~ 111 (131)
T 3hx1_A 77 GQSSVNGLMINGKKVQE--HIIQTGDEIVMGPQVSVR 111 (131)
T ss_dssp SCCCSSCEEETTEEESE--EECCTTCEEECSTTCEEE
T ss_pred CCCCCCceEECCEEeEe--EECCCCCEEEECCEEEEE
Confidence 99999999999886 57888875 66655543
No 19
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.63 E-value=5.6e-16 Score=128.31 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=68.1
Q ss_pred eEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCC
Q 010907 388 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQG 465 (497)
Q Consensus 388 WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNG 465 (497)
+.|.+..+. +..+.|. ...++|||++ .|||+|+++.||++||.|.+.. + .|||.| |+||
T Consensus 6 ~~l~~~~g~---g~~~~l~-~~~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~~-------~-------~~~l~Dl~S~nG 66 (100)
T 3po8_A 6 VTLQLDDGS---GRTYQLR-EGSNIIGRGQ-DAQFRLPDTGVSRRHLEIRWDG-------Q-------VALLADLNSTNG 66 (100)
T ss_dssp EEEEECSSS---CCEEECC-SEEEEEESST-TCSEECCCTTSCSSCEEEEECS-------S-------CEEEEECSCSSC
T ss_pred EEEEEECCC---CcEEEEC-CCCEEEeCCC-CCCEECCCCCcChhhCEEEEeC-------C-------EEEEEECCCCCC
Confidence 345554432 3578885 4569999998 5999999999999999999853 3 489999 9999
Q ss_pred eeecCccCCCceeccCCCC--EEeceEeeccC
Q 010907 466 TFCMKEVPDFFLEELNSAT--RVGRCYLSGLF 495 (497)
Q Consensus 466 TFVNGeRI~~~yleLrdGD--rIG~t~Ls~lf 495 (497)
|||||+++.. +.|.+|| .||.+.|.+.|
T Consensus 67 t~vng~~i~~--~~L~~gd~i~iG~~~~~~~~ 96 (100)
T 3po8_A 67 TTVNNAPVQE--WQLADGDVIRLGHSEIIVRM 96 (100)
T ss_dssp CEETTEECSE--EECCTTCEEEETTEEEEEEE
T ss_pred EEECCEECce--EECCCCCEEEECCEEEEEEE
Confidence 9999999874 5688887 57877776544
No 20
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.61 E-value=1.2e-15 Score=137.24 Aligned_cols=83 Identities=12% Similarity=0.018 Sum_probs=61.8
Q ss_pred ceEEeecc-ceeeecCCCCccceecCCCccccCceEEEEecccccCCcccc-----ccccceeEEEe-CCCCeeecCccC
Q 010907 401 EPLYIHRQ-SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAAS-----MYYCMRTRMID-WHQGTFCMKEVP 473 (497)
Q Consensus 401 eti~L~rq-s~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~-----~~~~IrpYLiD-STNGTFVNGeRI 473 (497)
..|+|... ..|+|||++ .|||+|+++.||++||.|.+.... .|.+ ....-.|||+| |+|||||||++|
T Consensus 18 ~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~----~g~~~~~~~~~~~~~~~l~DlStNGT~VNg~ri 92 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHA----VGKSMYESPAQGLDDIWYCHTGTNVSYLNNNRM 92 (158)
T ss_dssp CCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECC----CCCCCSSCSCSSCEEEEEEECSTTCCEETTEEC
T ss_pred eEEEEcCCCceEEECCCC-CCCEEeCCCCcChHHeEEEEecCc----cccccccccccccccEEEEECCcCCeEECCEEc
Confidence 46888532 349999998 599999999999999999997521 1100 00012689999 999999999998
Q ss_pred CC-ceeccCCCCEEec
Q 010907 474 DF-FLEELNSATRVGR 488 (497)
Q Consensus 474 ~~-~yleLrdGDrIG~ 488 (497)
.. .++.|.+||.|-.
T Consensus 93 ~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 93 IQGTKFLLQDGDEIKI 108 (158)
T ss_dssp CSSEEEECCSSCCEES
T ss_pred CCCceEEcCCCCEEEE
Confidence 74 5678999986544
No 21
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.60 E-value=1.1e-15 Score=141.32 Aligned_cols=89 Identities=11% Similarity=0.028 Sum_probs=65.0
Q ss_pred ceEEeecc-ceeeecCCCCccceecCCCccccCceEEEEecccccCCcccc-----ccccceeEEEe-CCCCeeecCccC
Q 010907 401 EPLYIHRQ-SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAAS-----MYYCMRTRMID-WHQGTFCMKEVP 473 (497)
Q Consensus 401 eti~L~rq-s~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~-----~~~~IrpYLiD-STNGTFVNGeRI 473 (497)
..|+|... ..|+|||++ .|||+|+++.||++||.|.+.... .|.+ ....-.|||+| |+|||||||++|
T Consensus 42 ~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~~~----~g~~~~e~~~~~~~~~~l~DlStNGT~VNg~ri 116 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHA----VGKSMYESPAQGLDDIWYCHTGTNVSYLNNNRM 116 (182)
T ss_dssp SCCCBTTCCSSEEESSST-TSSSCCCCTTSCSSCEEEEEECCC----CCSSCCSSCCCSCCEEEECCCSSSCCEETTEEC
T ss_pred eEEEEcCCCceEEECCCC-CCCEEECCCCcChHHeEEEEecCc----cccccccccccccceEEEEECCcCCeEECCEEc
Confidence 46777432 249999998 599999999999999999997521 1100 00012589999 999999999998
Q ss_pred CC-ceeccCCCC--EE-----eceEeecc
Q 010907 474 DF-FLEELNSAT--RV-----GRCYLSGL 494 (497)
Q Consensus 474 ~~-~yleLrdGD--rI-----G~t~Ls~l 494 (497)
.. ..+.|.+|| .| |.+.+.+.
T Consensus 117 ~~~~~~~L~~GD~I~l~~d~~G~~~l~f~ 145 (182)
T 1qu5_A 117 IQGTKFLLQDGDEIKIIWDKNNKFVIGFK 145 (182)
T ss_dssp CSSEEEECCTTBCCEEEEEGGGTEEEECC
T ss_pred CCCcceEcCCCCEEEEEEcCCCCEEEEEE
Confidence 74 567899987 47 76666543
No 22
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.60 E-value=1.9e-15 Score=132.44 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=68.1
Q ss_pred CcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCc----cccCceEEEEecccccCCccccccccceeEEE
Q 010907 385 SVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS----CSKQHAVIQFRQVEKEQPDAASMYYCMRTRMI 460 (497)
Q Consensus 385 ~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPS----VSRqHAVIQfr~~eken~dG~~~~~~IrpYLi 460 (497)
...|.|... |. .. ..+.|.....|+|||++ .|||+|+++. ||++||.|.+.. +| .|||.
T Consensus 7 ~~~w~l~~~-G~-~~-~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~------~g-------~~~l~ 69 (138)
T 2pie_A 7 GRSWCLRRV-GM-SA-GWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP------EG-------QWTIM 69 (138)
T ss_dssp CEEEEEEET-TC-SS-CBEEECTTCCEEEESSS-SSSEECCCSSCTTSSCSSCEEEEECT------TS-------CEEEE
T ss_pred CccEEEEEe-CC-CC-CEEEecCCCeEEECCCC-CCCEEeCCCCcCCCCChhHeEEEEcC------CC-------cEEEE
Confidence 456876543 32 22 36888656779999998 5999999999 999999999852 34 48999
Q ss_pred e--CCCCeeecCccCCC-ceeccCCCCE--Eec
Q 010907 461 D--WHQGTFCMKEVPDF-FLEELNSATR--VGR 488 (497)
Q Consensus 461 D--STNGTFVNGeRI~~-~yleLrdGDr--IG~ 488 (497)
| |+|||||||++|.. ..+.|.+||. ||.
T Consensus 70 Dl~S~NGT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 70 DNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp ECSCSSCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred ECCCCCCeEECCEEcCCCCcEECCCCCEEEECC
Confidence 9 99999999999863 4578999985 565
No 23
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.58 E-value=3.2e-15 Score=136.26 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=61.3
Q ss_pred ceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCCCcee
Q 010907 401 EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPDFFLE 478 (497)
Q Consensus 401 eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~~~yl 478 (497)
..|.|. ...++|||.. .|||+|+++.||++||+|.+.. + .|||+| |+|||||||++|.. +
T Consensus 78 ~~~~L~-~~~~~IGR~~-~~dI~L~d~~VSr~HA~I~~~~-------~-------~~~l~DlgStNGT~VNG~~i~~--~ 139 (157)
T 3oun_A 78 RTYQLR-EGSNIIGRGQ-DAQFRLPDTGVSRRHLEIRWDG-------Q-------VALLADLNSTNGTTVNNAPVQE--W 139 (157)
T ss_dssp CEEECC-SEEEEEESST-TCSEECCCTTSCTTCEEEEECS-------S-------CEEEEECSCSSCCEETTEECSE--E
T ss_pred eEEEEC-CCcEEEEeCC-CCCEEeCCCCcChhHEEEEEEC-------C-------EEEEEECCCCCCeEECCEECce--E
Confidence 578885 4569999998 5999999999999999999853 3 489999 99999999999974 5
Q ss_pred ccCCCCE--EeceEee
Q 010907 479 ELNSATR--VGRCYLS 492 (497)
Q Consensus 479 eLrdGDr--IG~t~Ls 492 (497)
.|.+||+ ||.+.|.
T Consensus 140 ~L~~GD~I~lG~~~l~ 155 (157)
T 3oun_A 140 QLADGDVIRLGHSEII 155 (157)
T ss_dssp ECCTTCEEEETTEEEE
T ss_pred ECCCCCEEEECCEEEE
Confidence 7888875 6665553
No 24
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.56 E-value=1.1e-14 Score=124.71 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=67.9
Q ss_pred EEEEeecCccc----cceEEeeccceeeecCC-CCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--
Q 010907 389 RLYVFKAGEML----KEPLYIHRQSCYLFGRE-RRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-- 461 (497)
Q Consensus 389 rLyVfKGGe~l----~eti~L~rqs~YlIGRd-~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-- 461 (497)
+|.++.++... ...|.|. ...++|||. ...|||+|+++.||++||.|.+.. | .|||.|
T Consensus 13 ~Lv~l~~d~~~s~~~~~~~~L~-~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~~-------~-------~~~l~dl~ 77 (120)
T 1wln_A 13 YLVELSPDGSDSRDKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMD-------G-------VVTVTPRS 77 (120)
T ss_dssp EEEEECSSSCCCSSCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESS-------S-------CEEEEESC
T ss_pred EEEEeCCChhhccCccEEEEEC-CCCEEECCCCCCCCcEEECCCCCchhheEEEEcC-------C-------EEEEEECC
Confidence 57776654221 3467784 456899974 235999999999999999999852 4 489999
Q ss_pred CCCCeeecCccCCCceeccCCCCE--Eec-eEeeccC
Q 010907 462 WHQGTFCMKEVPDFFLEELNSATR--VGR-CYLSGLF 495 (497)
Q Consensus 462 STNGTFVNGeRI~~~yleLrdGDr--IG~-t~Ls~lf 495 (497)
|+|||||||++|... +.|.+||+ ||. +.|.+..
T Consensus 78 S~ngt~vNg~~i~~~-~~L~~GD~I~iG~~~~~~f~~ 113 (120)
T 1wln_A 78 MDAETYVDGQRISET-TMLQSGMRLQFGTSHVFKFVD 113 (120)
T ss_dssp SSSCEEETSCBCSSC-EEECTTCEEEETTTEEEEEEC
T ss_pred CCCCEEECCEEcCCC-EECCCCCEEEECCceEEEEEC
Confidence 899999999999853 56888874 777 5555443
No 25
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.55 E-value=1.5e-14 Score=129.86 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=66.5
Q ss_pred EEEEeecCccc-cceEEeeccceeeecCCCC--ccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CC
Q 010907 389 RLYVFKAGEML-KEPLYIHRQSCYLFGRERR--VADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WH 463 (497)
Q Consensus 389 rLyVfKGGe~l-~eti~L~rqs~YlIGRd~~--vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--ST 463 (497)
+|.-+..+..+ +..+|+.....++|||... .|||+|++|.||++||+|.+... + ....+|++| |+
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~------~----~~~~~~~~d~~S~ 109 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSR------G----GSEAVVTLEPCEG 109 (154)
T ss_dssp EEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECT------T----SSSCEEEEEECTT
T ss_pred eEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecC------C----CceeEEEEecCCC
Confidence 66666554322 1234444667899999752 49999999999999999999742 2 112467787 99
Q ss_pred CCeeecCccCCCceeccCCCCE--EeceEe
Q 010907 464 QGTFCMKEVPDFFLEELNSATR--VGRCYL 491 (497)
Q Consensus 464 NGTFVNGeRI~~~yleLrdGDr--IG~t~L 491 (497)
|||||||++|... +.|.+||+ ||.+.+
T Consensus 110 ngt~VNG~~i~~~-~~L~~GD~I~~G~~~~ 138 (154)
T 4ejq_A 110 ADTYVNGKKVTEP-SILRSGNRIIMGKSHV 138 (154)
T ss_dssp CCEEETTEECCSC-EECCTTCEEEETTTEE
T ss_pred CceEECCEEcCCc-eECCCCCEEEECCcEE
Confidence 9999999999764 57999985 676543
No 26
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.54 E-value=1.3e-14 Score=125.49 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=55.7
Q ss_pred eeeecCCCCccceecCCC-ccccCceEEEEecccccCCccccccccceeEEEe-CCCCeeecCccCCC-ceeccCCCCE-
Q 010907 410 CYLFGRERRVADIPTDHP-SCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQGTFCMKEVPDF-FLEELNSATR- 485 (497)
Q Consensus 410 ~YlIGRd~~vcDIvLdhP-SVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNGTFVNGeRI~~-~yleLrdGDr- 485 (497)
.++|||++. |||+|+++ .||++||.|.+.. +| .|||.| |+|||||||+++.. ..+.|.+||.
T Consensus 37 ~~~IGR~~~-~di~l~~~~~vSr~Ha~i~~~~------~g-------~~~l~DlS~NGT~vNg~~l~~~~~~~L~~Gd~I 102 (127)
T 1g6g_A 37 VWTFGRNPA-CDYHLGNISRLSNKHFQILLGE------DG-------NLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEI 102 (127)
T ss_dssp EEEEESSTT-SSEECCSCTTSCSSCEEEEECT------TS-------CEEEEECCSSCCEETTEECCTTCCEECCTTCEE
T ss_pred CEEECCCCC-CCEEeCCCCCCChhHeEEEECC------CC-------cEEEEECCcCCeEECCEEcCCCCeEEcCCCCEE
Confidence 689999985 99999998 5999999999952 34 489999 99999999999873 5578999985
Q ss_pred -Eece
Q 010907 486 -VGRC 489 (497)
Q Consensus 486 -IG~t 489 (497)
||.+
T Consensus 103 ~lG~~ 107 (127)
T 1g6g_A 103 TVGVG 107 (127)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 5664
No 27
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.52 E-value=2.6e-14 Score=142.13 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=65.6
Q ss_pred ceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCCCcee
Q 010907 401 EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPDFFLE 478 (497)
Q Consensus 401 eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~~~yl 478 (497)
..|.|.. ..++|||++. |||+|+++.||++||.|.+.. | .|||.| |+|||||||++|.. .+
T Consensus 299 ~~~~l~~-~~~~iGR~~~-~di~l~~~~vSr~Ha~i~~~~-------~-------~~~l~Dl~S~nGt~vng~~i~~-~~ 361 (388)
T 2ff4_A 299 RGYPLQA-AATRIGRLHD-NDIVLDSANVSRHHAVIVDTG-------T-------NYVINDLRSSNGVHVQHERIRS-AV 361 (388)
T ss_dssp CEEECCS-SEEEEESSTT-SSEECCCTTSCTTCEEEEECS-------S-------CEEEEECSCSSCCEETTEECSS-EE
T ss_pred cEEEECC-CCEEEecCCC-CeEEECCCccChhHeEEEEEC-------C-------EEEEEECCCCCCeEECCEECCC-ce
Confidence 5788854 5799999985 999999999999999999853 3 489999 99999999999964 46
Q ss_pred ccCCCC--EEeceEeeccCC
Q 010907 479 ELNSAT--RVGRCYLSGLFP 496 (497)
Q Consensus 479 eLrdGD--rIG~t~Ls~lf~ 496 (497)
.|.+|| .||.+.|.+.++
T Consensus 362 ~L~~gd~i~~G~~~~~~~~~ 381 (388)
T 2ff4_A 362 TLNDGDHIRICDHEFTFQIS 381 (388)
T ss_dssp EECTTCEEEETTEEEEEECS
T ss_pred ECCCCCEEEECCEEEEEEeC
Confidence 788887 578877766553
No 28
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.48 E-value=2.8e-14 Score=143.12 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=68.2
Q ss_pred eEEEEeecCccccceEEeeccceeeecCCCC--ccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CC
Q 010907 388 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERR--VADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WH 463 (497)
Q Consensus 388 WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~--vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--ST 463 (497)
|.|..- ++-..+..+.|.... |+|||... .++|+++||+|||+||+|++...... +|. ......+||+| |+
T Consensus 2 WiL~~~-~d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~--dg~-~~~~~~l~I~DLgSk 76 (325)
T 3huf_A 2 WIIEAE-GDILKGKSRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEK--DYF-TGGPCEFEVKDLDTK 76 (325)
T ss_dssp EEEEES-TTTTTTCCEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHH--HHH-HCCCCCEEEEECSCS
T ss_pred cEEecc-CccCCCeEEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEeccccc--ccc-cCCcceEEEEECCCC
Confidence 777762 321123578886655 99999963 13479999999999999999754221 221 22345689999 99
Q ss_pred CCeeecCccCCC-ceeccCCCC--EEeceEe
Q 010907 464 QGTFCMKEVPDF-FLEELNSAT--RVGRCYL 491 (497)
Q Consensus 464 NGTFVNGeRI~~-~yleLrdGD--rIG~t~L 491 (497)
|||||||++|.. .+..+.+|+ +||.+..
T Consensus 77 nGTfVNGerI~~~~~~L~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 77 FGTKVNEKVVGQNGDSYKEKDLKIQLGKCPF 107 (325)
T ss_dssp SCEEETTEECCTTCEEECSSEEEEEETTCSS
T ss_pred CCEEECCEECCCceeeecCCCCEEEecCCcc
Confidence 999999999874 454455665 5776543
No 29
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.46 E-value=1.2e-13 Score=121.13 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=65.3
Q ss_pred EEEEeecCcccc--ceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CCCC
Q 010907 389 RLYVFKAGEMLK--EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQG 465 (497)
Q Consensus 389 rLyVfKGGe~l~--eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNG 465 (497)
+|+.+.++.... ..|+|. . .++|||... |||+|+++.||++||+|.+.. +| .++|+| ++||
T Consensus 28 hLvnLn~Dp~~s~~l~y~L~-~-~t~IGR~~~-~DI~L~~~~Vs~~Ha~I~~~~------~g-------~~~l~dl~~ng 91 (124)
T 3fm8_A 28 FLVNLNADPALNELLVYYLK-E-HTLIGSANS-QDIQLCGMGILPEHCIIDITS------EG-------QVMLTPQKNTR 91 (124)
T ss_dssp EEEETTCCTTSSCCCEEECC-S-EEEEESSTT-CSEECCSTTCCSSCEEEEECT------TS-------CEEEEECTTCC
T ss_pred EEEEeCCCCccCceEEEECC-C-CeEECCCCC-CCEEECCCCeecceEEEEECC------CC-------eEEEEECCCCC
Confidence 777777653331 235563 3 489999984 999999999999999998842 34 378999 9999
Q ss_pred eeecCccCCCceeccCCCCE--EeceE
Q 010907 466 TFCMKEVPDFFLEELNSATR--VGRCY 490 (497)
Q Consensus 466 TFVNGeRI~~~yleLrdGDr--IG~t~ 490 (497)
|||||++|... +.|.+||+ ||.+.
T Consensus 92 t~VNG~~V~~~-~~L~~GD~I~lG~~~ 117 (124)
T 3fm8_A 92 TFVNGSSVSSP-IQLHHGDRILWGNNH 117 (124)
T ss_dssp EEETTEECCSC-EEECTTCEEEETTTE
T ss_pred EEECCEEcCCc-EECCCCCEEEECCCe
Confidence 99999999854 57999985 66443
No 30
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.31 E-value=4.9e-12 Score=112.09 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=75.6
Q ss_pred cceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEeCCCC
Q 010907 386 VRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQG 465 (497)
Q Consensus 386 ~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiDSTNG 465 (497)
..|+|.|+.|-... ..+.|. ...|+||.++-.|||+|.|+.||++||.|++.. +| |+|.+|+||
T Consensus 3 ~~~klrvlsG~~~G-~~l~L~-~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~------~g--------~~L~~s~ng 66 (123)
T 4a0e_A 3 GSWVCRFYQGKHRG-VEVELP-HGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDE------EG--------IRLTDSAEP 66 (123)
T ss_dssp CCEEEEECSGGGTT-CEEEEC-SEEEEEESCTTTCSEECCCTTSCSSCEEEEEET------TE--------EEEEEESSC
T ss_pred ceEEEEEecCCCCC-cEEEcC-CCcEEECCCCCCCCEEEeCCCccceeEEEEECC------Ce--------EEEEeccCC
Confidence 36999999986655 578995 467999999724999999999999999999974 34 678899999
Q ss_pred eeecCccCCCc-eeccCCCCEEeceEeec
Q 010907 466 TFCMKEVPDFF-LEELNSATRVGRCYLSG 493 (497)
Q Consensus 466 TFVNGeRI~~~-yleLrdGDrIG~t~Ls~ 493 (497)
|||||+.+... |+....-..||.+.|.+
T Consensus 67 t~vdG~~v~~~~~L~~g~~l~lG~~~l~~ 95 (123)
T 4a0e_A 67 LLQEGLPVPLGTLLRAGSCLEVGFLLWTF 95 (123)
T ss_dssp CEETTEECCTTCBCCTTSCEEETTEEEEE
T ss_pred EEECCEEcccccccCCCCEEEEccEEEEE
Confidence 99999997754 77777777899888863
No 31
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.24 E-value=7.7e-12 Score=108.01 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=54.7
Q ss_pred eEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEeCCCCe-eecCccCCCceecc
Q 010907 402 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGT-FCMKEVPDFFLEEL 480 (497)
Q Consensus 402 ti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiDSTNGT-FVNGeRI~~~yleL 480 (497)
++.|+....|.|||++ .|+|+|++|+||+.||.|.... .| .|+.-|+||| ||||+++ . .+.|
T Consensus 14 ~v~l~~~~~~rIGR~~-~~~l~LddpsVs~~HAti~~~~------~G--------~~~l~S~nGtVFVNGqrv-~-~~~I 76 (102)
T 3uv0_A 14 AILLKADTIYRIGRQK-GLEISIADESMELAHATACILR------RG--------VVRLAALVGKIFVNDQEE-T-VVDI 76 (102)
T ss_dssp CEECCTTCCEEEESST-TSTEECCCTTSCTTCEEEEEEE------TT--------EEEEEESSSCEEETTEEE-S-EEEE
T ss_pred cEEeecCcEEEEcCCC-CCcEEECCcccccceEEEEecC------Cc--------eEEEEeccCcEEECCEEe-e-eEEc
Confidence 5778888899999998 5999999999999999998864 34 3553399995 9999999 4 3567
Q ss_pred CCCCE
Q 010907 481 NSATR 485 (497)
Q Consensus 481 rdGDr 485 (497)
.+||.
T Consensus 77 ~~gDt 81 (102)
T 3uv0_A 77 GMENA 81 (102)
T ss_dssp CGGGC
T ss_pred cCCcc
Confidence 77764
No 32
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.18 E-value=4e-11 Score=118.07 Aligned_cols=89 Identities=26% Similarity=0.335 Sum_probs=65.6
Q ss_pred ce-EEEEeecCccccceEEeeccceeeecCCCCccceecCCCcc---------ccCceEEEEecccccCCccccccccce
Q 010907 387 RW-RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSC---------SKQHAVIQFRQVEKEQPDAASMYYCMR 456 (497)
Q Consensus 387 ~W-rLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSV---------SRqHAVIQfr~~eken~dG~~~~~~Ir 456 (497)
.| +|+++.++. ..+.|. ...|+|||+. .|||+|++|.| |+.||.|..... ..+ ...
T Consensus 9 ~~g~l~~~~~~~---~~~~l~-~~~~~iGR~~-~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~----~~~-----~~~ 74 (419)
T 3i6u_A 9 PWARLWALQDGF---ANLECV-NDNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVG----PKN-----SYI 74 (419)
T ss_dssp CSEEEEECSSSS---CCEEEC-SSEEEEESST-TSSEETTCTTGGGCSGGGGSCTTCEEEECCEE----TTT-----EEC
T ss_pred CceEeeecCCCC---CceEec-CCCEEecCCC-ccCEEECCcccccccccccccccceEEEEEcC----CCC-----ceE
Confidence 47 666666654 357884 5679999998 59999999987 999999965421 112 235
Q ss_pred eEEEe-CCCCeeecCccCC-CceeccCCCCE--Eece
Q 010907 457 TRMID-WHQGTFCMKEVPD-FFLEELNSATR--VGRC 489 (497)
Q Consensus 457 pYLiD-STNGTFVNGeRI~-~~yleLrdGDr--IG~t 489 (497)
+||.| |+|||||||..+. .....|.+++. ||.+
T Consensus 75 ~~i~D~S~nGt~vn~~~~~~~~~~~l~~~d~i~~~~~ 111 (419)
T 3i6u_A 75 AYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIALSLS 111 (419)
T ss_dssp CEEEECCSSCEEETTEECCTTCEEECCTTEEEEESST
T ss_pred EEEEECCcCCceECcccccCCCcccCCCCCEeeeecc
Confidence 89999 9999999999976 34456788764 5543
No 33
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.76 E-value=3.1e-08 Score=91.81 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=63.8
Q ss_pred EEEEeecCcccc--ceEEeeccceeeecCCC--CccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CC
Q 010907 389 RLYVFKAGEMLK--EPLYIHRQSCYLFGRER--RVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WH 463 (497)
Q Consensus 389 rLyVfKGGe~l~--eti~L~rqs~YlIGRd~--~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-ST 463 (497)
+|+-+..+..+. -.|+| ....++|||.. ..|||+|..+.|+.+||+|.+... +. ....++|.. +.
T Consensus 70 hLvnLn~Dp~ls~~l~y~L-~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~------~~---~~~~vtl~p~~~ 139 (184)
T 4egx_A 70 HLVNLNEDPLMSECLLYYI-KDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSR------GG---SEAVVTLEPCEG 139 (184)
T ss_dssp EEEECCCCTTCSSCSEEEC-CSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECC------SS---CSCEEEEEECTT
T ss_pred eEEeccCCcccCceEEEEE-CCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCC------CC---ceEEEEEeeCCC
Confidence 666665543221 14566 45678999964 248999999999999999988641 11 011345556 78
Q ss_pred CCeeecCccCCCceeccCCCCE--EeceEe
Q 010907 464 QGTFCMKEVPDFFLEELNSATR--VGRCYL 491 (497)
Q Consensus 464 NGTFVNGeRI~~~yleLrdGDr--IG~t~L 491 (497)
+.|||||.+|... +.|.+||+ ||...+
T Consensus 140 a~t~VNG~~I~~~-~~L~~GDrI~lG~~h~ 168 (184)
T 4egx_A 140 ADTYVNGKKVTEP-SILRSGNRIIMGKSHV 168 (184)
T ss_dssp CCEEETTEECCSC-EECCTTCEEEETTTEE
T ss_pred CeEEEcCEEcccc-EEcCCCCEEEECCCCE
Confidence 8999999999864 57999986 666543
No 34
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.68 E-value=3.6e-08 Score=84.64 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=58.2
Q ss_pred ceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CCCCeeecCccCC-Ccee
Q 010907 401 EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQGTFCMKEVPD-FFLE 478 (497)
Q Consensus 401 eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNGTFVNGeRI~-~~yl 478 (497)
..|.|.....++|||.+. +. |.+..|||+|+.|.+... .| .+.|.| ++|+|||||..+. ...+
T Consensus 15 ~~I~L~~g~~v~iGR~p~-t~--I~DkrcSR~h~~L~~~~~-----~g-------~v~vk~lg~Np~~vng~~l~k~~~~ 79 (102)
T 3kt9_A 15 QRIRLPHLEAVVIGRGPE-TK--ITDKKCSRQQVQLKAECN-----KG-------YVKVKQVGVNPTSIDSVVIGKDQEV 79 (102)
T ss_dssp CEEECCBTCEEEECSSTT-TC--CCCTTSCSSCEEEEEETT-----TT-------EEEEEECSSSCCEETTEECCBTCEE
T ss_pred CcEEcCCCCcEEeccCCc-cc--cccCcccCcceEEEEecC-----CC-------EEEEEECcCCCCeECCEEcCCCCeE
Confidence 368887777788999983 54 479999999999999752 23 357889 9999999999876 5667
Q ss_pred ccCCCCEEe
Q 010907 479 ELNSATRVG 487 (497)
Q Consensus 479 eLrdGDrIG 487 (497)
.|.+||.|-
T Consensus 80 ~L~~GD~l~ 88 (102)
T 3kt9_A 80 KLQPGQVLH 88 (102)
T ss_dssp EECTTCCEE
T ss_pred EeCCCCEEE
Confidence 899999765
No 35
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.62 E-value=6.6e-08 Score=84.25 Aligned_cols=79 Identities=10% Similarity=0.104 Sum_probs=60.7
Q ss_pred eEEee-ccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CCCCeeecCccCC-Ccee
Q 010907 402 PLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQGTFCMKEVPD-FFLE 478 (497)
Q Consensus 402 ti~L~-rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNGTFVNGeRI~-~~yl 478 (497)
.|.|. ....++|||.+ +..|.|..|||+|+.|++... +| .+.|.| ++|+|||||..+. ...+
T Consensus 21 ~I~Lp~~~g~~viGR~p---~t~I~DkrcSR~hv~L~ad~~-----~~-------~v~vk~lG~Np~~vng~~l~k~~~~ 85 (110)
T 2brf_A 21 PIFLPSDGQALVLGRGP---LTQVTDRKCSRTQVELVADPE-----TR-------TVAVKQLGVNPSTTGTQELKPGLEG 85 (110)
T ss_dssp CEECCSTTCCEEECSBT---TTTBCCTTSCSSCEEEEEETT-----TT-------EEEEEECSSSCCEEC-CBCCTTCEE
T ss_pred cEEeccCCCCEEEcCCC---CcccccccceeeeEEEEEecC-----CC-------EEEEEEcccCCcEECCEEcCCCCEE
Confidence 68884 33568999998 556789999999999999753 23 356679 9999999999876 5678
Q ss_pred ccCCCCEE----eceEeeccC
Q 010907 479 ELNSATRV----GRCYLSGLF 495 (497)
Q Consensus 479 eLrdGDrI----G~t~Ls~lf 495 (497)
.|.+||.| |.+.+...|
T Consensus 86 ~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 86 SLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp EEETTCEEEEETTEEEEEEEE
T ss_pred EecCCCEEEEccCCeEEEEEe
Confidence 89999987 555555555
No 36
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.55 E-value=1.4e-07 Score=85.67 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=61.0
Q ss_pred eEEee-ccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CCCCeeecCccCC-Ccee
Q 010907 402 PLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQGTFCMKEVPD-FFLE 478 (497)
Q Consensus 402 ti~L~-rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNGTFVNGeRI~-~~yl 478 (497)
.|.|. ....++|||++ +..|.|.-|||+|+.|++... .| .+.|.+ ++|+|||||..+. ...+
T Consensus 21 ~I~Lp~~~g~vvIGRgP---et~ItDkRcSR~qv~L~ad~~-----~g-------~V~Vk~lG~NP~~vng~~L~k~~~~ 85 (143)
T 1yj5_C 21 PIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPE-----SR-------TVAVKQLGVNPSTVGVHELKPGLSG 85 (143)
T ss_dssp CEECCTTTCEEEECSBT---TTTBCCSSSCSSCEEEEEETT-----TT-------EEEEEECSSSCCEETTEECCTTCEE
T ss_pred cEEeccCCCCEEEcCCC---ccccccccccceeEEEEEecC-----CC-------eEEEEEcccCCcEECCEEecCCCEE
Confidence 58884 34679999997 567889999999999999763 24 245778 9999999999876 5678
Q ss_pred ccCCCCEE----eceEeeccC
Q 010907 479 ELNSATRV----GRCYLSGLF 495 (497)
Q Consensus 479 eLrdGDrI----G~t~Ls~lf 495 (497)
.|.+||.| |.+.+...|
T Consensus 86 ~L~~GD~LeLl~g~y~f~V~f 106 (143)
T 1yj5_C 86 SLSLGDVLYLVNGLYPLTLRW 106 (143)
T ss_dssp EECTTCEEESSSSCSEEEEEE
T ss_pred EecCCCEEEEecCCceEEEEe
Confidence 89999987 444444444
No 37
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.37 E-value=3.3e-07 Score=87.45 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=52.6
Q ss_pred eEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCc--cccccccceeEEEe--CCCCe-eecCccCCCc
Q 010907 402 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPD--AASMYYCMRTRMID--WHQGT-FCMKEVPDFF 476 (497)
Q Consensus 402 ti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~d--G~~~~~~IrpYLiD--STNGT-FVNGeRI~~~ 476 (497)
.+++..+ .++|||++ .|||+|+++ + ||.|.... . + | .|+|.| |+||| ||||++|...
T Consensus 86 ~y~~~~~-~itIG~~~-~~dI~l~~~-~---~~~~~~~~-~----~~~~-------~~~l~~l~s~ngtvyvNg~~i~~~ 147 (238)
T 1wv3_A 86 AYPSIQD-TMTIGPNA-YDDMVIQSL-M---NAIIIKDF-Q----SIQE-------SQYVRIVHDKNTDVYINYELQEQL 147 (238)
T ss_dssp ECCSSCS-EEEEESST-TSSEECTTC-S---SCEEEECG-G----GHHH-------HCEEEEECCTTCCEEETTEECCSS
T ss_pred EEecCCc-eEEEeCCC-CCeEEeCCC-e---eEEEEecc-c----CcCC-------cEEEEEccCCCCCEEECCEEeccc
Confidence 4556555 78999997 599999998 4 57666541 0 1 2 378888 89997 9999998754
Q ss_pred eeccC-CCCE--EeceEeec
Q 010907 477 LEELN-SATR--VGRCYLSG 493 (497)
Q Consensus 477 yleLr-dGDr--IG~t~Ls~ 493 (497)
..|. .||. ||.+.+..
T Consensus 148 -~~L~~~GD~I~ig~~~~~~ 166 (238)
T 1wv3_A 148 -TNKAYIGDHIYVEGIWLEV 166 (238)
T ss_dssp -EEEEETTCEEEETTEEEEE
T ss_pred -eeccCCcCEEEECCEEEEE
Confidence 3577 7774 66666644
No 38
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.36 E-value=3.1e-07 Score=81.07 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=56.2
Q ss_pred eEEee-ccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe-CCCCeeecCccCC-Ccee
Q 010907 402 PLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID-WHQGTFCMKEVPD-FFLE 478 (497)
Q Consensus 402 ti~L~-rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD-STNGTFVNGeRI~-~~yl 478 (497)
.|.|. ....++|||.+ +..|.|.-|||+|+.|++... .+ .+.|.+ .+|+|||||.++. ...+
T Consensus 28 ~I~Lp~~~g~~viGRgp---~t~I~DkrcSR~qv~L~ad~~-----~~-------~v~vk~lG~NP~~vng~~l~k~~~~ 92 (119)
T 1ujx_A 28 PIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPE-----SR-------TVAVKQLGVNPSTVGVQELKPGLSG 92 (119)
T ss_dssp CCCCCTTSCCEEESBBT---TTTBCCTTSCTTSEEEEEETT-----TT-------EEEEEECSSSCCBSSSSBCCTTCEE
T ss_pred cEEeccCCCCEEEcCCC---CcccccccccceeEEEEEecC-----CC-------EEEEEEcccCCcEECCEEecCCCEE
Confidence 46773 33568999997 566889999999999999763 23 355678 9999999999876 5678
Q ss_pred ccCCCCEEe
Q 010907 479 ELNSATRVG 487 (497)
Q Consensus 479 eLrdGDrIG 487 (497)
.|.+||.|-
T Consensus 93 ~L~~GD~l~ 101 (119)
T 1ujx_A 93 SLSLGDVLY 101 (119)
T ss_dssp EEETTCCCB
T ss_pred EecCCCEEE
Confidence 899999764
No 39
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=63.33 E-value=13 Score=35.28 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred EEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEe
Q 010907 389 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFR 439 (497)
Q Consensus 389 rLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr 439 (497)
.|+||.++. + ..+.|.....|+||... .|||.|.++ ..|+.|.+.
T Consensus 3 ~l~i~y~~~-~-~~~~L~~~~~~tiG~~~-~~~itl~~~---~~~i~l~~~ 47 (238)
T 1wv3_A 3 KLIIKYNKQ-L-KMLNLRDGKTYTISEDE-RADITLKSL---GEVIHLEQN 47 (238)
T ss_dssp EEEEEETTE-E-EEEECCTTCCEEEESCT-TSSEECTTC---CCCEEEEEC
T ss_pred EEEEEECCE-E-EEEecCCCcEEEECCCc-cceEEecCC---CccEEEEEc
Confidence 477777654 2 35777545689999998 599999877 566666664
Done!