Query 010908
Match_columns 497
No_of_seqs 231 out of 1749
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0114 FumC Fumarase [Energy 100.0 5E-135 1E-139 1010.7 46.2 459 36-496 2-462 (462)
2 KOG1317 Fumarase [Energy produ 100.0 4E-127 1E-131 927.4 37.5 466 31-496 22-487 (487)
3 COG1027 AspA Aspartate ammonia 100.0 1E-122 3E-127 918.4 44.4 460 35-495 2-463 (471)
4 PRK12425 fumarate hydratase; P 100.0 1E-115 2E-120 928.0 49.3 458 37-496 2-461 (464)
5 PRK14515 aspartate ammonia-lya 100.0 3E-112 6E-117 902.4 49.7 459 35-496 9-469 (479)
6 PLN00134 fumarate hydratase; P 100.0 1E-110 3E-115 888.8 49.4 454 44-497 1-456 (458)
7 TIGR00979 fumC_II fumarate hyd 100.0 6E-109 1E-113 875.8 48.8 456 37-494 1-458 (458)
8 PRK13353 aspartate ammonia-lya 100.0 1E-107 2E-112 870.3 48.2 458 35-495 3-462 (473)
9 PRK00485 fumC fumarate hydrata 100.0 4E-104 8E-109 842.5 49.2 457 37-496 4-463 (464)
10 PRK12273 aspA aspartate ammoni 100.0 4E-104 8E-109 842.8 48.1 460 36-496 4-465 (472)
11 TIGR00839 aspA aspartate ammon 100.0 4E-101 9E-106 816.6 49.4 458 38-496 1-461 (468)
12 cd01357 Aspartase Aspartase. T 100.0 4E-101 1E-105 815.5 48.1 448 38-488 1-450 (450)
13 cd01362 Fumarase_classII Class 100.0 1.3E-97 3E-102 789.3 49.6 453 38-492 1-455 (455)
14 cd01596 Aspartase_like asparta 100.0 1.9E-93 4E-98 756.0 49.0 448 38-488 1-450 (450)
15 PRK09053 3-carboxy-cis,cis-muc 100.0 4E-82 8.6E-87 672.9 39.4 409 52-495 9-435 (452)
16 PRK00855 argininosuccinate lya 100.0 1.2E-77 2.7E-82 639.5 41.7 411 51-495 3-435 (459)
17 cd01597 pCLME prokaryotic 3-ca 100.0 2.7E-77 5.9E-82 634.3 40.0 407 52-495 3-426 (437)
18 TIGR00838 argH argininosuccina 100.0 4.6E-77 9.9E-82 634.9 40.5 411 54-495 5-431 (455)
19 TIGR00928 purB adenylosuccinat 100.0 1.1E-75 2.4E-80 621.4 37.8 404 52-495 2-427 (435)
20 PLN02646 argininosuccinate lya 100.0 1.9E-75 4.1E-80 622.3 38.7 409 53-495 17-447 (474)
21 PRK08540 adenylosuccinate lyas 100.0 3.2E-75 6.9E-80 619.8 37.2 409 49-495 4-432 (449)
22 COG0165 ArgH Argininosuccinate 100.0 1.6E-74 3.5E-79 597.2 38.8 406 53-494 4-433 (459)
23 cd01359 Argininosuccinate_lyas 100.0 3.4E-74 7.4E-79 610.5 37.8 388 75-495 4-412 (435)
24 PRK07492 adenylosuccinate lyas 100.0 8E-73 1.7E-77 596.8 40.1 404 52-495 2-423 (435)
25 PRK08470 adenylosuccinate lyas 100.0 1.5E-72 3.2E-77 596.8 40.3 398 54-495 4-432 (442)
26 PRK06390 adenylosuccinate lyas 100.0 9.9E-73 2.1E-77 600.3 38.9 412 47-495 2-430 (451)
27 PRK04833 argininosuccinate lya 100.0 7.4E-72 1.6E-76 593.4 40.5 403 54-494 7-432 (455)
28 PRK07380 adenylosuccinate lyas 100.0 9.2E-72 2E-76 588.1 40.7 399 54-495 4-421 (431)
29 COG0015 PurB Adenylosuccinate 100.0 1.2E-71 2.6E-76 577.6 38.9 401 52-495 2-427 (438)
30 PRK06705 argininosuccinate lya 100.0 1.1E-71 2.3E-76 597.3 39.1 393 75-496 33-449 (502)
31 cd03302 Adenylsuccinate_lyase_ 100.0 1E-70 2.2E-75 582.2 40.0 406 52-495 2-436 (436)
32 cd01595 Adenylsuccinate_lyase_ 100.0 2.1E-70 4.5E-75 572.1 33.7 358 76-460 7-375 (381)
33 TIGR02426 protocat_pcaB 3-carb 100.0 9.8E-69 2.1E-73 550.2 34.6 335 52-424 3-338 (338)
34 PRK12308 bifunctional arginino 100.0 2.2E-68 4.8E-73 587.5 38.6 399 58-495 11-439 (614)
35 cd01360 Adenylsuccinate_lyase_ 100.0 5.6E-68 1.2E-72 554.1 37.2 364 54-460 1-374 (387)
36 PRK02186 argininosuccinate lya 100.0 7.2E-67 1.6E-71 597.1 40.0 391 52-475 412-818 (887)
37 KOG1316 Argininosuccinate lyas 100.0 2.9E-67 6.2E-72 513.8 28.0 405 52-493 6-434 (464)
38 PRK05975 3-carboxy-cis,cis-muc 100.0 7.5E-66 1.6E-70 530.4 35.3 334 52-426 12-347 (351)
39 cd01334 Lyase_I Lyase class I 100.0 1.7E-65 3.7E-70 524.9 34.4 323 80-427 1-325 (325)
40 PRK09285 adenylosuccinate lyas 100.0 2.1E-64 4.6E-69 534.8 35.1 407 48-495 9-447 (456)
41 PRK06389 argininosuccinate lya 100.0 4.1E-64 8.8E-69 524.5 35.9 372 54-468 3-389 (434)
42 cd01598 PurB PurB_like adenylo 100.0 1.5E-62 3.2E-67 515.5 36.4 389 76-495 7-425 (425)
43 PLN02848 adenylosuccinate lyas 100.0 3.5E-62 7.5E-67 517.1 37.5 406 49-495 13-450 (458)
44 PF00206 Lyase_1: Lyase; Inte 100.0 6.1E-64 1.3E-68 510.6 22.1 307 45-375 1-312 (312)
45 KOG2700 Adenylosuccinate lyase 100.0 5.5E-42 1.2E-46 347.0 24.3 411 47-495 6-449 (481)
46 cd01594 Lyase_I_like Lyase cla 100.0 5.1E-35 1.1E-39 284.9 26.1 195 162-414 32-228 (231)
47 PRK08937 adenylosuccinate lyas 100.0 6.9E-30 1.5E-34 247.2 19.2 177 313-494 22-216 (216)
48 PF10415 FumaraseC_C: Fumarase 99.3 3E-12 6.5E-17 96.7 3.3 55 441-495 1-55 (55)
49 PF10397 ADSL_C: Adenylosuccin 97.8 2.4E-05 5.2E-10 64.0 4.5 55 441-495 9-72 (81)
50 PF14698 ASL_C2: Argininosucci 95.9 0.0037 8.1E-08 49.7 1.4 54 440-494 2-69 (70)
51 PF08328 ASL_C: Adenylosuccina 93.9 0.22 4.7E-06 43.2 6.8 102 389-493 3-115 (115)
52 KOG2700 Adenylosuccinate lyase 87.2 14 0.0003 39.5 13.6 31 208-239 224-254 (481)
53 PF10925 DUF2680: Protein of u 59.2 37 0.0008 26.1 5.9 38 78-115 11-49 (59)
54 PF02022 Integrase_Zn: Integra 21.0 88 0.0019 22.0 2.2 21 92-112 13-34 (40)
No 1
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=4.8e-135 Score=1010.66 Aligned_cols=459 Identities=68% Similarity=1.046 Sum_probs=453.4
Q ss_pred cccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 010908 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV 114 (497)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev 114 (497)
.+|+|+|+||+++||.|+|||.||+|+++||++|+. ++|..+|++++.+|+|+|++|.++| ||++.+++|.++|++|
T Consensus 2 ~~R~E~Dt~G~i~Vpad~~wgAQTqRs~~nF~ig~~--~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev 79 (462)
T COG0114 2 TYRIEHDTMGEVEVPADALWGAQTQRSLENFPIGGE--KMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEV 79 (462)
T ss_pred CcccccccCccccccHHHHHHHHHHHHHhcCCcccc--cCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999987 7999999999999999999999999 9999999999999999
Q ss_pred HccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHH
Q 010908 115 AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193 (497)
Q Consensus 115 ~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L 193 (497)
++|+++++||+++||+||||++|||+||||++++++++|++.|.+. ||||||||+||||||++|||||+++..++...|
T Consensus 80 ~~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~L 159 (462)
T COG0114 80 LAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRL 159 (462)
T ss_pred HcCcccCCCCeEEEecCCCccccccHHHHHHHHHHHHhCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998888766 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC
Q 010908 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273 (497)
Q Consensus 194 ~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~ 273 (497)
++.|+.|.++|.+|+++|++++++||||+|||+|+||||+|++|+.+|.+.++|++.+.+++..+++||||||||+|+++
T Consensus 160 iPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAVGTGlNa~p 239 (462)
T COG0114 160 IPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHP 239 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCC
Q 010908 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSI 353 (497)
Q Consensus 274 ~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSi 353 (497)
+|++++.+++++.+|+++.+++|.|++++++|.+++++++|..+|++|.|||||||+|.||||||+|||.+|+++|||||
T Consensus 240 ~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lPenePGSSI 319 (462)
T COG0114 240 EFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENEPGSSI 319 (462)
T ss_pred cHHHHHHHHHHHHhCCCcccCCcHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHH
Q 010908 354 MPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433 (497)
Q Consensus 354 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~ 433 (497)
||+|+||++||.+.++|.||+|+++++.+++++|+||+|+++|+++||+|+|+++|++++..|.++|+.||++|++||++
T Consensus 320 MPGKVNPtq~EA~tmv~~QV~Gnd~ai~~ags~GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~ 399 (462)
T COG0114 320 MPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKE 399 (462)
T ss_pred CCCCCCchhHHHHHHHHHHHHcchHHHHHhhccCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 434 ~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
++++|+|++|+|+|+|||++|++|+|+|+++|+|++|++.+.|++|++|||+|+||++|+++.
T Consensus 400 ~l~~SlmLVTaLnp~IGYdkAa~IAK~A~keg~tlreaa~~~G~lte~efd~~v~Pe~mv~~~ 462 (462)
T COG0114 400 LLERSLMLVTALNPHIGYDKAAKIAKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGPG 462 (462)
T ss_pred HHhhCchHHHhcccccchHHHHHHHHHHHHCCCcHHHHHHHcCCCCHHHHHHhcCHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999974
No 2
>KOG1317 consensus Fumarase [Energy production and conversion]
Probab=100.00 E-value=4.5e-127 Score=927.36 Aligned_cols=466 Identities=79% Similarity=1.180 Sum_probs=459.3
Q ss_pred ccccccccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 010908 31 RSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQA 110 (497)
Q Consensus 31 ~~~~~~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gi~~~~a~~I~~a 110 (497)
..+.+++|+|+|+||+++||+|+|||+||+|++.||.|+|.++|||.++|++|+.+|+|+|.+|.++|||+..+++|.+|
T Consensus 22 ~~~~~~fR~E~DtfGe~~VP~DkyyGAQT~Rs~~NF~IGg~~ERMP~pii~AfGiLKkaaA~vN~~~GLDpkis~Ai~~A 101 (487)
T KOG1317|consen 22 RSMSSSFRTERDTFGEIEVPADKYYGAQTQRSLQNFKIGGERERMPEPIIQAFGILKKAAAEVNQEYGLDPKISKAISQA 101 (487)
T ss_pred cccccchhhhccccCcccccchhhhhHHHHHHhhccccCCccccCchHHHHHHHHHHHHHHHHhHhhCCChHHHHHHHHH
Confidence 34445799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHH
Q 010908 111 AQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETN 190 (497)
Q Consensus 111 ~~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~ 190 (497)
+|+|.+|++.+|||++.||+||||++|||+||||.||++|++|++.|.+.||||||||.+|||||.+||++||++-.++.
T Consensus 102 adeV~~GKL~dhFPLvvwQTGSGTQsNMN~NEVIsNrAieilGg~~GsK~VHPNdHvN~SQSSNDTFPtamHIa~~~ei~ 181 (487)
T KOG1317|consen 102 ADEVASGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEILGGKLGSKKVHPNDHVNKSQSSNDTFPTAMHIAAATEIN 181 (487)
T ss_pred HHHHhcCcccccCceeEEecCCCccccCcHHHHHHHHHHHHhcccccCcccCCccccccccccCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCC
Q 010908 191 SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN 270 (497)
Q Consensus 191 ~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~ 270 (497)
..|++.|..|.++|..|+++|+|++++||||.|||+|.|+||+|++|++++...++|+..+++|+..+.+||||||||+|
T Consensus 182 ~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~ngl~Rv~~~lpr~y~LA~GGTAVGTGLN 261 (487)
T KOG1317|consen 182 SRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQRVAATLPRLYQLAQGGTAVGTGLN 261 (487)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHhcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhHHHHHhcCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCC
Q 010908 271 TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG 350 (497)
Q Consensus 271 ~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~G 350 (497)
+.++|++++.+++++++||++..++|.|++++.||.++|++++|+.+|++|.|||+|||+++|||||++||+.||+++||
T Consensus 262 Tr~GFaeK~a~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~SlmKianDIRfLGSGPRcGlgEL~LPENEPG 341 (487)
T KOG1317|consen 262 TRKGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPENEPG 341 (487)
T ss_pred ccccHHHHHHHHHHHHhCCCceecccHHHHHHhhhhHHHhcccHHHHHHHHHHHhhhhhhccCCCCCCccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHH
Q 010908 351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430 (497)
Q Consensus 351 SSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~er 430 (497)
|||||+|+||++||.+.++|.||+|++++++.++++|+||+|+|+|+++.++|.|+++++|+..+|..+|+.||+.|+||
T Consensus 342 SSIMPGKVNPTQcEamTmvcaQVMGN~vAvtvgGsnGhFELNVFKP~i~~nvL~SirLl~D~~~sF~~nCV~GI~aN~er 421 (487)
T KOG1317|consen 342 SSIMPGKVNPTQCEAMTMVCAQVMGNHVAVTVGGSNGHFELNVFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKER 421 (487)
T ss_pred cccCCCCCCcHHHHHHHHHHHHHhcCceEEEecccCceeEEecchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 431 ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 431 m~~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
+.+.+.+|+|++|+|+|+|||+.|+++++.|+++|.||++...+.|++++|+||+|+.|+.|+||+
T Consensus 422 I~kll~eSLMLVTALNPhIGYD~aAkiAKtAhKng~TLk~eal~lG~lTeeqFdewV~Pe~Mlgpk 487 (487)
T KOG1317|consen 422 IAKLLNESLMLVTALNPHIGYDNAAKIAKTAHKNGTTLKEEALKLGVLTEEQFDEWVVPEKMLGPK 487 (487)
T ss_pred HHHHHHhhhhhhhccCCccCchhHHHHHHHHhhcCCcHHHHHHHhcCCCHHHHHhhhCHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 3
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-122 Score=918.36 Aligned_cols=460 Identities=45% Similarity=0.725 Sum_probs=451.7
Q ss_pred ccccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 010908 35 TSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQE 113 (497)
Q Consensus 35 ~~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~e 113 (497)
+.+|+|+|.+|+.+||.+.|||.+|.|+++||+|||......+.+|+++..||+|+|.||.++| ||++.+++|.+|||+
T Consensus 2 ~~~R~E~D~lGe~~ip~evYyGI~TlRA~eNF~Is~~~~~~~p~~i~a~~~VKKAaAlaN~elg~l~~~~~~aIv~ACDe 81 (471)
T COG1027 2 TDMRIERDLLGEREIPAEVYYGIHTLRAVENFPISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKACDE 81 (471)
T ss_pred CcchhhhhhcccccCcchhhhhhHHHHHHhcCCCcCCcccccHHHHHHHHHHHHHHHHhhhhhCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999998544459999999999999999999999 999999999999999
Q ss_pred HHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHH
Q 010908 114 VAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 192 (497)
Q Consensus 114 v~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~ 192 (497)
|++|+..++|++|++|+|+||++|||+||||+|++.|++|.++|.|. +|||||||++||+||++||++||.+...+ ..
T Consensus 82 il~Gk~~dqFvvD~~QGGAGTS~NMN~NEVIAN~AlE~lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l-~~ 160 (471)
T COG1027 82 ILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALELLGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSL-RK 160 (471)
T ss_pred HHcCccccccceeccccCCCccccccHHHHHHHHHHHHhcCCCCceeeeCCccccchhhcccccchhHHHHHHHHHH-HH
Confidence 99999999999999999999999999999999999999999999997 99999999999999999999999998765 68
Q ss_pred HHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCC
Q 010908 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272 (497)
Q Consensus 193 L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~ 272 (497)
|.+.+..|++++..|+++|++++|+||||+|||+|+|+||+|.+|+..|.+|++||..+.+++..+++||||+|||+|++
T Consensus 161 L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlGqEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAiGTGiNa~ 240 (471)
T COG1027 161 LIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINAP 240 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcChhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeccCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCC
Q 010908 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSS 352 (497)
Q Consensus 273 ~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSS 352 (497)
++|.+.+.+++++.+|++..++.|.++++++.|.+++++++|..+|..|+|||||||||+||||+|++||.||+.|+|||
T Consensus 241 ~~Y~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP~~Q~GSS 320 (471)
T COG1027 241 KGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGSS 320 (471)
T ss_pred hhHHHHHHHHHHHHhCCCCccchhHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccCcccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHH
Q 010908 353 IMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 432 (497)
Q Consensus 353 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~ 432 (497)
|||+|+||+++|.+.++|++|+|++.++.+++..||+|+|+++|++.+++++|+.++.+++..|+++||+||++|+++|+
T Consensus 321 IMPgKVNPVipEvvnQvcf~ViGnD~tit~AaeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~ 400 (471)
T COG1027 321 IMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCE 400 (471)
T ss_pred CCCCCcCchhHHHHHHHHHHHhcchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCC
Q 010908 433 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 433 ~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~ 495 (497)
+++..|.+++|+|+|++||+.+.+++|+|.++|++++|++++.|.|+++|++++|+|+++..|
T Consensus 401 ~~v~nSigivTaLnp~iGy~~~~~iaK~a~~tgksv~evvLe~g~Lteeel~~Il~~~~m~~p 463 (471)
T COG1027 401 EYVENSIGIVTALNPYIGYENAAIIAKEALETGKSVREVVLERGLLTEEELDDILSPENMTKP 463 (471)
T ss_pred HHHHhhhHHHHhhcccccchHHHHHHHHHHHcCCcHHHHHHHhCCCCHHHHHHHhChhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 4
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=1.1e-115 Score=928.03 Aligned_cols=458 Identities=58% Similarity=0.903 Sum_probs=445.1
Q ss_pred ccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 010908 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (497)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~ 115 (497)
+|+|+|++|+++||.+.|||.||+|+++||++||. ++|+.+|++++.||+|||.+|.+.| ||++++++|.++|++|.
T Consensus 2 ~r~e~d~~g~~~~p~~~~~g~~t~ra~~nf~~~~~--~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~I~~al~ei~ 79 (464)
T PRK12425 2 SRTETDSLGPIEVPEDAYWGAQTQRSLINFAIGKE--RMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVL 79 (464)
T ss_pred CCcCcccCCCCCCcccccchHHHHHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999987 7899999999999999999999999 99999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHHH
Q 010908 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (497)
Q Consensus 116 ~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~ 194 (497)
+++..++|++++||+|+|||+|||+||||++++.+++|++.|++. ||||||||+||||||+++|+++|++++.+.+.|.
T Consensus 80 ~~~~~~~f~~~~~~~g~~ed~~mnvnevi~~~~~e~~G~~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~l~ 159 (464)
T PRK12425 80 DGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLL 159 (464)
T ss_pred cCcccCCCCccCCCCCCcchHHHHHHHHHHHHHHHHhCcccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 998889999999999999999999999999999999997677544 9999999999999999999999999876535899
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCC
Q 010908 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (497)
Q Consensus 195 ~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (497)
+.|..|+++|.+||++|++++||||||+|||||+||||||++|+++|.|+++||..++++++.+|+||||+||+++++++
T Consensus 160 ~~L~~l~~~L~~~A~~~~~tim~GrTHlQ~A~PiT~G~~~~a~~~~l~rd~~RL~~~~~r~~~~plGggAvGT~~~~~~~ 239 (464)
T PRK12425 160 PAIAELSGGLAEQSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPHG 239 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeecccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCC
Q 010908 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (497)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiM 354 (497)
|++.+.+.|++.|||+.++.+|++|++++||++++++++|++++++|+|||+||++|+|+||+|||||.+|+.++|||||
T Consensus 240 ~~~~~~~~La~~LG~~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g~~ei~lp~~~~GSSiM 319 (464)
T PRK12425 240 FAEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPANEPGSSIM 319 (464)
T ss_pred HHHHHHHHHHHHhCCCCcccccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCceEEECCCCCCCCCCC
Confidence 99999999999999999779999999999999999999999999999999999999999999999999999889999999
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (497)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 434 (497)
|||+||+++|.++++|++|+|++.++..+..+++|++|.++|.+.+++|++++.+.+++..+...|++||+||++||+++
T Consensus 320 PqK~NP~~~E~i~~~a~~v~G~~~~v~~~~~~~~~q~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~ 399 (464)
T PRK12425 320 PGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKPVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAH 399 (464)
T ss_pred CCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 435 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 435 l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
++.+++++|+|++++||++||+++++|.++|++++|++.+.+.++++++++++||++|+++.
T Consensus 400 l~~~~~~at~L~~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldP~~~~~~~ 461 (464)
T PRK12425 400 LERGLMLVTALNPHIGYDKAAEIAKKAYAEGTTLREAALALGYLTDEQFDAWVRPENMLEAG 461 (464)
T ss_pred HHcccHHHHHhhhccCHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHHcCHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999973
No 5
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=2.7e-112 Score=902.40 Aligned_cols=459 Identities=41% Similarity=0.694 Sum_probs=444.9
Q ss_pred ccccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 010908 35 TSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQE 113 (497)
Q Consensus 35 ~~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~e 113 (497)
..+|+|+|++|+++||.+.|||.||+|+++||++++. ++|+.+|++++.+++|||.+|.+.| |+++++++|.++|++
T Consensus 9 ~~~r~e~d~~g~~~~p~~~~~g~~t~ra~~~f~~~~~--~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I~~al~e 86 (479)
T PRK14515 9 NGVRIEKDFLGEKEVPNYAYYGVQTMRAVENFPITGY--KIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEAAQE 86 (479)
T ss_pred CCCccccccCCCCCCcccccchHHHHHHHHhccCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999998775 7899999999999999999999999 999999999999999
Q ss_pred HHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHH
Q 010908 114 VAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 192 (497)
Q Consensus 114 v~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~ 192 (497)
|.++...++|+++++|+|+||++|||+|||||+++++++|++.|+|. ||||||||+||||||+++|+++|++++.+ ..
T Consensus 87 i~~~~~~~~f~~~~~~~g~~t~~nmnvnevie~~~~~~~G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l-~~ 165 (479)
T PRK14515 87 ILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNAL-EG 165 (479)
T ss_pred HHcCcccCCCCCCcccCCCcccccchHHHHHHHHHHHHhCcccCCccccCccccCCCCCCchhHHHHHHHHHHHHHH-HH
Confidence 99998899999999999999999999999999999999997778876 89999999999999999999999998765 69
Q ss_pred HHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCC
Q 010908 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272 (497)
Q Consensus 193 L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~ 272 (497)
|.+.|..|+++|.++|++|++++||||||+|||||+||||||++|+++|.|+++||.+++++++.+||||||+||+++++
T Consensus 166 l~~~L~~L~~~L~~~A~~~~~~vm~GrTHlQ~A~PiT~G~~~~~~a~~l~r~~~RL~~~~~~l~~~pLG~gAvGT~~~~~ 245 (479)
T PRK14515 166 LLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTGLNAD 245 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccchhccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCC
Q 010908 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSS 352 (497)
Q Consensus 273 ~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSS 352 (497)
++|..++...+++.+|++.++.+|.+|++++||++++++++|++++.+|+|||+||++|+|+||+|||||.+|+.++|||
T Consensus 246 ~~~~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g~~Ei~lp~~~~GSS 325 (479)
T PRK14515 246 PEYIEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLPARQPGSS 325 (479)
T ss_pred hhHHHHHHHHHHHHhCCCCCCCcchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCeeEEeCCCCCCCcC
Confidence 99999999999999999987788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHH
Q 010908 353 IMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 432 (497)
Q Consensus 353 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~ 432 (497)
|||||+||+.+|.++++|++|+|++.++.++..++++|+|.++|++.++++.+++.+.+++..++.+|++||+||++||+
T Consensus 326 iMP~KrNP~~~E~i~~~a~~v~G~~~~~~~~~~~~~le~n~~~p~i~~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~ 405 (479)
T PRK14515 326 IMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVMEPVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLK 405 (479)
T ss_pred CCCcccCchHHHHHHHHHHHHHhHHHHHHHHHhcccHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999998889999999999999
Q ss_pred HHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 433 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 433 ~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
++++.+++++|+|++++||+++++++++|.++|++|+|++.+.+.++++|+++++||++|++|+
T Consensus 406 ~~l~~s~~l~t~La~~iG~~~v~~~a~~A~~~g~~l~e~~~~~~~l~~~el~~~ldP~~~~~~~ 469 (479)
T PRK14515 406 EYVEKSVGIITAVNPHIGYEAAARVAKEAIATGQSVRELCVKNGVLSQEDLELILDPFEMTHPG 469 (479)
T ss_pred HHHHhCccHHHHhcchhcHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHhCCHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999873
No 6
>PLN00134 fumarate hydratase; Provisional
Probab=100.00 E-value=1.2e-110 Score=888.84 Aligned_cols=454 Identities=88% Similarity=1.283 Sum_probs=440.5
Q ss_pred CCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCC
Q 010908 44 FGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDH 122 (497)
Q Consensus 44 ~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~ 122 (497)
+|+++||.+.|||.||+|+++||++||.+.++++++|++|+.||+|++++|.+.| ||++++++|.++|++|.+++..++
T Consensus 1 ~g~~~~p~~~~~g~~t~ra~~nf~~~~~~~~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~al~ei~~~~~~~~ 80 (458)
T PLN00134 1 MGPIQVPADKLWGAQTQRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDH 80 (458)
T ss_pred CCCccCCcccchhHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCC
Confidence 6999999999999999999999999996558899999999999999999999999 999999999999999999888899
Q ss_pred CcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 123 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLH 201 (497)
Q Consensus 123 f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~ 201 (497)
|+++++|+|+||+.|||+||||+++++|++|++.|+|. +|||||||+||||||+++|+++|+++++++..+.+.|..|+
T Consensus 81 f~~~~~~~g~g~~~~~~v~evie~~l~e~~g~~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~ 160 (458)
T PLN00134 81 FPLVVWQTGSGTQTNMNANEVIANRAAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELH 160 (458)
T ss_pred ccccccccCCcccccCcHHHHHHHHHHHHhCcccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997788775 99999999999999999999999998776678999999999
Q ss_pred HHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHH
Q 010908 202 NSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS 281 (497)
Q Consensus 202 ~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~ 281 (497)
++|.++|++|+||+||||||+|||||+||||||++|+++|.|+++||.+++++++.+||||||+||+++++++|+.++++
T Consensus 161 ~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~ 240 (458)
T PLN00134 161 ESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTKKGFDEKIAA 240 (458)
T ss_pred HHHHHHHHHhcCCccccccccCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCccCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCCCCCChh
Q 010908 282 AVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPT 361 (497)
Q Consensus 282 ~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP~K~NP~ 361 (497)
++++.|||+.++.+|++|++++||++++++++|+.++++|+|||+||++|+|+||+|||||.+|+.++||||||||+||+
T Consensus 241 ~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev~lp~~~~GSSiMP~KrNPv 320 (458)
T PLN00134 241 AVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPENEPGSSIMPGKVNPT 320 (458)
T ss_pred HHHHHhCCCCCCCccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceEECCCCCCCCCCCCCCcCCH
Confidence 99999999997789999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhH
Q 010908 362 QCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLML 441 (497)
Q Consensus 362 ~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l 441 (497)
.+|.++++|+++.|++.++.+...+++|+.|+++|++.|+++++++.+.+++..+...|++||+||++||++|++.+.++
T Consensus 321 ~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l 400 (458)
T PLN00134 321 QCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLML 400 (458)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccch
Confidence 99999999999999999998778899999999999999999999999999999998899999999999999999999999
Q ss_pred HHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCCC
Q 010908 442 VTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 497 (497)
Q Consensus 442 ~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~~ 497 (497)
+|+|++++||++|+++++++.++|++++|++.+.+.++++|+++++||++|+||++
T Consensus 401 ~~~La~~ig~~~A~~~~~~a~~~g~~l~e~~~~~~~l~~~el~~~ldP~~~~~~~~ 456 (458)
T PLN00134 401 VTALNPKIGYDKAAAVAKKAHKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGPSD 456 (458)
T ss_pred HHHhhhccCHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHHcCHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999863
No 7
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=100.00 E-value=6.2e-109 Score=875.83 Aligned_cols=456 Identities=69% Similarity=1.068 Sum_probs=440.0
Q ss_pred ccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 010908 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (497)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~ 115 (497)
+|+|+|++|+++||.++|||.+|+|+++||+++|. ++++.+|++|++||+|+|.+|.++| ||++.+++|.++|+++.
T Consensus 1 ~r~e~d~~g~~~~p~~~~~g~~t~r~~~~f~~~~~--~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a~~~i~ 78 (458)
T TIGR00979 1 FRIEKDSMGEIQVPADKYWGAQTQRSLENFKIGTE--KMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEIL 78 (458)
T ss_pred CCCccccCCCCCCcccchhhHHHHHHHhcCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999987 7889999999999999999999999 99999999999999998
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHHH
Q 010908 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (497)
Q Consensus 116 ~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~ 194 (497)
++..+++|+.+++|++.+|++|||+|+||++++.+++|++.|++. ||||||||+|+||||++||+++|++++.+...|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~m~~~~via~~l~e~~g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~l~ 158 (458)
T TIGR00979 79 AGKLDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLI 158 (458)
T ss_pred hccccCCCceecccccccccccccHHHHHHHHHHHHcCcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 877779999999999999999999999999999999986665332 9999999999999999999999999876536999
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCC
Q 010908 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (497)
Q Consensus 195 ~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (497)
+.|..|+++|.++|++|+|++|+||||+||||||||||||++|+++|.|+++||..++++++.+||||||+||+++++++
T Consensus 159 ~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~ 238 (458)
T TIGR00979 159 PALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTHPG 238 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCeeecccccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhcCCccCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCC
Q 010908 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (497)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiM 354 (497)
|+.++.+++++.|||+.++.+|.++++++||++++++++|+.++++|+|||+||++|+|+||+|||||.+|++++|||||
T Consensus 239 ~~~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev~~p~~~~GSSiM 318 (458)
T TIGR00979 239 FDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIPENEPGSSIM 318 (458)
T ss_pred HHHHHHHHHHHHhCCCCeecCcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeEECCCCCCCCCCC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (497)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 434 (497)
|||+||+.+|.++++|+++.|+..++..+...+++++|.++|.+.|+++++++.+.+++..++..|++||+||++||++|
T Consensus 319 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~n 398 (458)
T TIGR00979 319 PGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQL 398 (458)
T ss_pred CCCcCCHHHHHHHHHHHHHHhhHHHHHHHHHhccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 99999999999999999999999999988888999999999999999999999999999999888999999999999999
Q ss_pred hhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccC
Q 010908 435 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 494 (497)
Q Consensus 435 l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g 494 (497)
+..+.+++|+|++++||++|+++++++.++|.+|+|++.+.+.++++++++++||++|+|
T Consensus 399 l~~~~~~~t~La~~lg~~~A~~~~~~a~~~~~~~~e~~~~~~~l~~~el~~~ldp~~~~~ 458 (458)
T TIGR00979 399 LNNSLMLVTALNPHIGYDNAAKIAKKAHKEGITLKEAALELGLLSEEEFDEWVVPEQMVG 458 (458)
T ss_pred HHcCccHHHHhhhccCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhcC
Confidence 999999999999999999999999999999999999999989999999999999999986
No 8
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=1e-107 Score=870.30 Aligned_cols=458 Identities=46% Similarity=0.724 Sum_probs=442.2
Q ss_pred ccccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 010908 35 TSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQE 113 (497)
Q Consensus 35 ~~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~e 113 (497)
.++|+|+|++|+++||.+.|||.||+|+++||+++|. ++|+++|++|+.|++|+|.++.+.| ||++++++|.++|++
T Consensus 3 ~~~r~~~d~~g~~~~~~~~~~g~~t~r~~~~f~~~~~--~~~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~al~~ 80 (473)
T PRK13353 3 KNMRIEHDLLGEKEVPAEAYYGIQTLRAVENFPITGY--KIHPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQACDE 80 (473)
T ss_pred CCcccccccCCCCCCcccccchHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999986 8899999999999999999999999 999999999999999
Q ss_pred HHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHH
Q 010908 114 VAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 192 (497)
Q Consensus 114 v~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~ 192 (497)
+.++...++|+++++++|+++++|||+|+||++++.+.+|++.|+|. ||||||||+||||||+++|+++|++++.+ ..
T Consensus 81 i~~~~~~d~f~~~~~~~~~~~~~~~n~~~vi~~~l~e~~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l-~~ 159 (473)
T PRK13353 81 ILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLL-EG 159 (473)
T ss_pred HHhccccCCCCcchhhccccchhcchhhHHHHHHHHHHhCccccCCccCCcccCccCCCChhhHHHHHHHHHHHHHH-HH
Confidence 98877679999999999999999999999999999999997778775 99999999999999999999999998765 69
Q ss_pred HHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCC
Q 010908 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272 (497)
Q Consensus 193 L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~ 272 (497)
|.+.|..|+++|.+||++|++++||||||+|||||+||||||++|+++|.|+++||..++++++.+||||||+||+++++
T Consensus 160 l~~~L~~l~~~L~~~A~~~~~~im~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~AvGT~~~~~ 239 (473)
T PRK13353 160 LLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNAD 239 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeeccccCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCC
Q 010908 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSS 352 (497)
Q Consensus 273 ~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSS 352 (497)
++|..+++++++++|||+.++.+|.+|++++||++++++++|+.++++|+|||+||++|+|+||+|||||.+|+.++|||
T Consensus 240 ~~~~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~la~la~~l~riA~Dl~llss~pr~e~gev~lp~~~~GSS 319 (473)
T PRK13353 240 PEYIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLPAVQPGSS 319 (473)
T ss_pred hhHHHHHHHHHHHHhCCCCccccchHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCceEEECCCCCCCCC
Confidence 99999999999999999987788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHH
Q 010908 353 IMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 432 (497)
Q Consensus 353 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~ 432 (497)
|||||+||+.+|.++++|+++.|+.+++..+..+++++.|.++|.+..+++.+++.+.+++..+++.|++||+||++||+
T Consensus 320 iMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~ 399 (473)
T PRK13353 320 IMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVMEPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCK 399 (473)
T ss_pred CCCCCcCChHHHHHHHHHHHHHhHHHHHHHHHHcCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHH
Confidence 99999999999999999999999999998888888899999999999999999999999999998889999999999999
Q ss_pred HHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCC
Q 010908 433 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 433 ~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~ 495 (497)
++++.+++++|+|++.+||+.+.+++++|.++|++|+|++.+.+.++++++++++||++|++|
T Consensus 400 ~~l~~~~~l~t~La~~Lgh~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~el~~~ldp~~~v~~ 462 (473)
T PRK13353 400 EYVEKSVGIATALNPHIGYEAAARIAKEAIATGRSVRELALENGLLSEEELDLILDPFRMTHP 462 (473)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCCCHHHHHHHcCHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 9
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=3.8e-104 Score=842.49 Aligned_cols=457 Identities=68% Similarity=1.040 Sum_probs=437.7
Q ss_pred ccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 010908 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (497)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~ 115 (497)
+|+|+|++|+++||.+++||+++.|++++|++|+. +++++++++|++|++|+|.++.++| ||++++++|.++|+++.
T Consensus 4 ~r~e~d~~g~~~~~~~~l~g~~~~~~~~~f~~s~~--~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~ 81 (464)
T PRK00485 4 TRIEKDSMGEVEVPADALWGAQTQRSLENFPIGGE--RMPRELIRALALLKKAAARVNAELGLLDAEKADAIVAAADEVI 81 (464)
T ss_pred cccccccCCCcCCccccccchhhHHHHhcCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998866 6799999999999999999999999 99999999999999997
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccC--CCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHH
Q 010908 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR--GEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193 (497)
Q Consensus 116 ~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~--g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L 193 (497)
++..+++|+.++.+++.++++|||+|++|++++.+..|++. |++ +||++|||+|+||||+++|+++|++++.+...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~-~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~l 160 (464)
T PRK00485 82 AGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKP-VHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERL 160 (464)
T ss_pred hCccccCCCcchhhccccccccccHHHHHHHHHHHhcCccccccCc-cCccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 76667899999999999999999999999998887777444 445 999999999999999999999999976642699
Q ss_pred HHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC
Q 010908 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273 (497)
Q Consensus 194 ~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~ 273 (497)
.+.|..|+++|.++|++|+|++||||||+|+||||||||||++|+++|.|+++||.+++++++.+||||||+||++++++
T Consensus 161 ~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~PiTfG~~~~~~~~~l~R~~~RL~~~~~r~~~~pLGg~AvGT~~~~~~ 240 (464)
T PRK00485 161 LPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAHP 240 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeeeeecCcCceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred CchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCC
Q 010908 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSI 353 (497)
Q Consensus 274 ~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSi 353 (497)
+|+.++++++|+.|||+.++.+|++|++++||++++++++|+.++++|+|||+||++|+|+||+|||||.+|++++||||
T Consensus 241 ~~~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~gev~lp~~~~GSSi 320 (464)
T PRK00485 241 GFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLPENEPGSSI 320 (464)
T ss_pred hHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEcCCCCCCCCC
Confidence 99999999999999999768999999999999999999999999999999999999999999999999999998999999
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHH
Q 010908 354 MPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433 (497)
Q Consensus 354 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~ 433 (497)
|||||||+.+|.++++|+++.|+..++.....++++|+|.+.|.+.|+++++++.+.+++..++..|++||+||++||++
T Consensus 321 MPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~ 400 (464)
T PRK00485 321 MPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKE 400 (464)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 99999999999999999999999999987888999999999998999999999999999999988899999999999999
Q ss_pred HhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 434 ~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
|+..+++++|+|++++||++|+++++++.++|.+|+|++.+.+.++++++++++||++|+||.
T Consensus 401 ~l~~~~~~~t~La~~lg~~~A~~~~~~a~~~g~~l~~~~~~~~~l~~~~l~~~ldP~~~~~~~ 463 (464)
T PRK00485 401 LLERSLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTEEEFDRWVDPEKMTGPG 463 (464)
T ss_pred HHHhCCeeHHHhccccCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcCHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
No 10
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=3.8e-104 Score=842.81 Aligned_cols=460 Identities=45% Similarity=0.720 Sum_probs=436.1
Q ss_pred cccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 010908 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV 114 (497)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev 114 (497)
.+|+|+|+||+++||.+.|||.||+|+++||+++|...+.+++++++|+++++|+|.++.+.| ||++++++|.++|+++
T Consensus 4 ~~r~~~~~~~~~~~~~~~~~~~~t~~~~~~f~~~~~~~~~~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~al~~i 83 (472)
T PRK12273 4 NTRIEKDLLGEREVPADAYYGIHTLRAVENFPISGVKISDYPELIRALAMVKKAAALANKELGLLDEEKADAIVAACDEI 83 (472)
T ss_pred CcccccccCCCcCCcccccchHHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999987333349999999999999999999999 9999999999999999
Q ss_pred HccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCc-cccCccccCCCCChhcHHHHHHHHHHHHHHHHHH
Q 010908 115 AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193 (497)
Q Consensus 115 ~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~-~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L 193 (497)
.++...++|+++.++++++++.|||+|++|+.++.+.+|++.|+| .+|||||||+|+||||+++|+++|++++.+ ..|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~~~e~~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l-~~l 162 (472)
T PRK12273 84 LAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSL-RKL 162 (472)
T ss_pred HhccccCCcccchhhccccchhhhHHHHHHHHHHHHHhCcccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHH-HHH
Confidence 877667889999999999999999999999998888998666655 399999999999999999999999998765 699
Q ss_pred HHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC
Q 010908 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273 (497)
Q Consensus 194 ~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~ 273 (497)
.+.|..|+++|.++|++|+||+||||||+|||||+||||||++|+++|.|+++||..++++++.+||||||+||++++++
T Consensus 163 ~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~AqP~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~plGg~AvGT~~~i~~ 242 (472)
T PRK12273 163 LDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAIGTGLNAPP 242 (472)
T ss_pred HHHHHHHHHHHHHHHHHccCCEEeecccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeCCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCC
Q 010908 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSI 353 (497)
Q Consensus 274 ~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSi 353 (497)
+|+..+.+++|+.|||+.++.+|.+|++++||++++++++++.++++|+|||+||++|+|+||+|||||.+|+.++||||
T Consensus 243 ~~~~~v~~~~A~~LGf~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~rlA~Di~llss~e~~e~gev~lp~~~~GSSi 322 (472)
T PRK12273 243 GYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGSSI 322 (472)
T ss_pred hHHHHHHHHHHHHcCCCcccCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEECCCCCCcCCC
Confidence 99899999999999999767789999999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHH
Q 010908 354 MPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433 (497)
Q Consensus 354 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~ 433 (497)
|||||||+.+|.++++|+++.|+..++.....+++++.|...|.+..++|+++..+..++..+..+|++||+||++||++
T Consensus 323 MPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~ 402 (472)
T PRK12273 323 MPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLELNVMEPVIAYNLFESISILTNACRTLREKCIDGITANEERCRE 402 (472)
T ss_pred CCcccCcHHHHHHHHHHHHHhhhHHHHHHHHHcCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 99999999999999999999999999987777788888888888888999999999999999964699999999999999
Q ss_pred HhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 434 ~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
|+..+++++|+|++++||+.|++++++|.++|++|+|++.+++.++++++++++||++|++|+
T Consensus 403 ~l~~~~~~~t~LA~~L~~~~a~~lv~~a~~~g~~l~~~~~~~~~l~~~el~~~ldp~~~v~~~ 465 (472)
T PRK12273 403 YVENSIGIVTALNPYIGYENAAEIAKEALETGKSVRELVLERGLLTEEELDDILSPENMTHPG 465 (472)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCCCHHHHHHHcCHHHhCCCC
Confidence 999999999999999999999999999999999999999998889999999999999999874
No 11
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=100.00 E-value=4e-101 Score=816.55 Aligned_cols=458 Identities=40% Similarity=0.651 Sum_probs=434.1
Q ss_pred cccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Q 010908 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAE 116 (497)
Q Consensus 38 r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~ 116 (497)
|+|.|.+|+++||.+.|||.+|.|+++||.++|.+..++++++++|++|+.|+|.+|.++| ||++++++|.++|+++.+
T Consensus 1 r~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~al~~~~d 80 (468)
T TIGR00839 1 RIEEDLLGEREVPADAYYGIHTLRASENFYISNNKISDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAACDEILN 80 (468)
T ss_pred CCCcccCCCCCCcccccchHHHHHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999997545559999999999999999999999 999999999999988765
Q ss_pred -cccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHHH
Q 010908 117 -GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (497)
Q Consensus 117 -~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~ 194 (497)
+...+.|++++.++++||++|||+||||+..+.+.+|++.|+|. +|||||||+|+||||+++|+++|++++. +..+.
T Consensus 81 ~~~~~~~~~l~~~~~~~g~~~~~~v~~vie~~l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~-l~~l~ 159 (468)
T TIGR00839 81 NGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSS-LIKLV 159 (468)
T ss_pred cccccccccccHHHccCccccccchHHHHHHHHHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHH-HHHHH
Confidence 45556899999999999999999999999999999986788884 5799999999999999999999999766 47999
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCC
Q 010908 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (497)
Q Consensus 195 ~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (497)
+.|..|+++|.++|++|++++||||||+|+|||+||||||++|+++|.|+++||.+++++++.+||||||+||+++++++
T Consensus 160 ~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~ 239 (468)
T TIGR00839 160 DAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTPPE 239 (468)
T ss_pred HHHHHHHHHHHHHHHHccCCeeeccccCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeCCCcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred chHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCC
Q 010908 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (497)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiM 354 (497)
++.+|++++|+.|||+.+..+|.+|++++||++++++++++.++++|+|||+||++|+|+|++|||||.+|..++|||||
T Consensus 240 ~~~~v~~~~a~~LGl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~~s~~~~~~~ev~~~~~~~gSS~M 319 (468)
T TIGR00839 240 YSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIM 319 (468)
T ss_pred HHHHHHHHHHHHhCCCCCCCccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceEEeCCCCCCCCCCC
Confidence 99999999999999998767899999999999999999999999999999999999999999999999999779999999
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (497)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 434 (497)
|||+||+.+|.++++|+++.|+..++.....+++++.+.++|.+..+++++++.+.+++..++..|++||+||++||++|
T Consensus 320 PqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~ 399 (468)
T TIGR00839 320 PAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVMEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGY 399 (468)
T ss_pred CCCcCcHHHHHHHHHHHHHHhHHHHHHHHHhcCChHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 99999999999999999999999998776677888888888888888999999999999987778999999999999999
Q ss_pred hhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 435 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 435 l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
+..+.+++++|++.+||+.|+++++++.++|++|+|++.+.+.++++++++++||++|++|+
T Consensus 400 l~~~~~~~~~La~~~g~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~~l~~~ldP~~~v~~~ 461 (468)
T TIGR00839 400 VFNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLEKGLLTEEELDDIFSVENLMHPA 461 (468)
T ss_pred HHHhHHHHHHHhhHhhHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHHcCHHHHcCCC
Confidence 99999999999999999999999999999999999999998999999999999999999973
No 12
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=4.5e-101 Score=815.49 Aligned_cols=448 Identities=47% Similarity=0.747 Sum_probs=427.9
Q ss_pred cccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Q 010908 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAE 116 (497)
Q Consensus 38 r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~ 116 (497)
|+|+|++|+++||.+.+||.||+|++.||+++|+ ++|++++++|+.+++|+|.++.+.| ||++++++|.++|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~t~~~~~~~~~~~~--~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~ 78 (450)
T cd01357 1 RIEHDLLGEREVPADAYYGIQTLRALENFPISGL--KIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIA 78 (450)
T ss_pred CCCcccCCCcCCcccccchHHHHHHHHcCCCCCC--CcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999986 7899999999999999999999999 999999999999999987
Q ss_pred cccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHH
Q 010908 117 GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIP 195 (497)
Q Consensus 117 ~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~ 195 (497)
+...++|+++++++++++++|||+|++|+.++++.+|++.|+|. +|||||||+|+||||+++|+++|++++.+ ..+.+
T Consensus 79 ~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~~~e~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l-~~l~~ 157 (450)
T cd01357 79 GKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLL-RKLLD 157 (450)
T ss_pred ccccCCCccchhhccccchhhhhHhHHHHHHHHHHhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHHHH-HHHHH
Confidence 66668999999999999999999999999998899986667754 99999999999999999999999998765 69999
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCc
Q 010908 196 NLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275 (497)
Q Consensus 196 ~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~ 275 (497)
.|..|+++|.++|++|++|+||||||+|||||+|||||+++|+++|.|+++||..++++++.+||||||+||+++++++|
T Consensus 158 ~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~~~~~~pLGg~AvGt~~~~~~~~ 237 (450)
T cd01357 158 ALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGY 237 (450)
T ss_pred HHHHHHHHHHHHHHHccCCEeeccccCcccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeCCCCCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCC
Q 010908 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 355 (497)
Q Consensus 276 ~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP 355 (497)
+.++.+++|+.|||+.++.+|.+|++++||+++++++++++++++|+|||+||++|+|+||+|||||.+|+.++||||||
T Consensus 238 ~~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev~~p~~~~GSSiMP 317 (450)
T cd01357 238 IELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLPAVQPGSSIMP 317 (450)
T ss_pred HHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeEECCCCCCcCCCCC
Confidence 99999999999999976678999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHh
Q 010908 356 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435 (497)
Q Consensus 356 ~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l 435 (497)
|||||+.+|.++++|+++.|+..++.+...+++++.|...|.+..+++.+++.+.+++..+...|++||+||++||++|+
T Consensus 318 qKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l 397 (450)
T cd01357 318 GKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYV 397 (450)
T ss_pred CCcCcHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH
Confidence 99999999999999999999999887766778888888888888899999999999999996589999999999999999
Q ss_pred hhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccC
Q 010908 436 HESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVV 488 (497)
Q Consensus 436 ~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ld 488 (497)
..+++++|+|++++||+.|+++++++.++|++|+|++.++++++++||++++|
T Consensus 398 ~~~~~~~t~La~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~el~~~~~ 450 (450)
T cd01357 398 ENSIGIVTALNPYIGYEAAAEIAKEALETGRSVRELVLEEGLLTEEELDEILS 450 (450)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999987
No 13
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.3e-97 Score=789.31 Aligned_cols=453 Identities=71% Similarity=1.062 Sum_probs=432.7
Q ss_pred cccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Q 010908 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAE 116 (497)
Q Consensus 38 r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~ 116 (497)
|+|+|.+|++++|.+++||.+|.|+++||++|++ ..++++|++|+.|++|+|+++.+.| ||++.+++|.++|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~f~~~~~--~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~al~~i~~ 78 (455)
T cd01362 1 RIEKDSMGEVEVPADALWGAQTQRSLENFPIGGE--RMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIA 78 (455)
T ss_pred CCCcccCCCcCCccccchhHHHHHHHhccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999987 6689999999999999999999999 999999999999999976
Q ss_pred cccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHH
Q 010908 117 GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIP 195 (497)
Q Consensus 117 ~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~ 195 (497)
...++.|+.++.+++.+++.|||+|++|++...+..|++.|+|. +|+++|||+|+||||+++|+++|++++.+.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l~~ 158 (455)
T cd01362 79 GKLDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLP 158 (455)
T ss_pred cccccCCceehhhccccccccccHHHHHHHHHHHhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 54568899999999999999999999999888887787778775 89999999999999999999999998776556999
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCc
Q 010908 196 NLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275 (497)
Q Consensus 196 ~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~ 275 (497)
.|..|+++|.++|++|++++||||||+|+|||+||||||++|+++|.|+++||..++++++.+||||||+||++++++.|
T Consensus 159 ~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~ 238 (455)
T cd01362 159 ALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAHPGF 238 (455)
T ss_pred HHHHHHHHHHHHHHHccCCeeeccccCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcCCeeccCCccCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCC
Q 010908 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 355 (497)
Q Consensus 276 ~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP 355 (497)
+..+++++|+.|||+.++.+|++|++++||++++++++++.++.+|+|||+||++|+|+||+|||||.+|++++||||||
T Consensus 239 ~~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~l~ria~Dl~~~~s~~~~e~gev~~~~~~~GSS~MP 318 (455)
T cd01362 239 AEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPENEPGSSIMP 318 (455)
T ss_pred HHHHHHHHHHHhCCCCccCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCCceEECCCCCCCCCCCC
Confidence 99999999999999977889999999999999999999999999999999999999999999999999999899999999
Q ss_pred CCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHh
Q 010908 356 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435 (497)
Q Consensus 356 ~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l 435 (497)
||+||+.+|+|+++|+++.|+..++..+...++|+.+.+.|.+.|.+++.++.+.+++..++..|++||+||++||++|+
T Consensus 319 qKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~l 398 (455)
T cd01362 319 GKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELL 398 (455)
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHhcCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH
Confidence 99999999999999999999999998888888999988888888999999999999999998899999999999999999
Q ss_pred hhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccc
Q 010908 436 HESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 492 (497)
Q Consensus 436 ~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~ 492 (497)
..++++++.|++.+||++|+++++++.++|.+|+|++.+++.++++|+++++||+++
T Consensus 399 ~~~~~~~~~La~~ig~~~A~~l~~~a~~~~~~l~~~~~~~~~~~~~el~~~~dp~~~ 455 (455)
T cd01362 399 ERSLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455 (455)
T ss_pred HhcchhHHHhccccCHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHHHhcCcccC
Confidence 999999999999999999999999999999999999998899999999999999875
No 14
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.9e-93 Score=756.04 Aligned_cols=448 Identities=59% Similarity=0.889 Sum_probs=426.7
Q ss_pred cccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Q 010908 38 REEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAE 116 (497)
Q Consensus 38 r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~ 116 (497)
|+|+|.+|++++|.+.+||+++.|.+.+|++|+. +++++++++|+.|+.|+|.++.+.| ||++++++|.++|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~i~~ 78 (450)
T cd01596 1 RIEKDSLGEVEVPADAYYGAQTQRALENFPISGE--RMPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIA 78 (450)
T ss_pred CCCcccCCCCCCcccccccHhHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999876 6899999999999999999999999 999999999999999987
Q ss_pred cccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCccccCcccc-CCCCChhcHHHHHHHHHHHHHHHHHHHH
Q 010908 117 GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHV-NRSQSSNDTFPTVMHIAAAMETNSRLIP 195 (497)
Q Consensus 117 ~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~v-n~g~SsnDi~~Ta~~l~~~~~~~~~L~~ 195 (497)
+..++.|+.++.+++.++++|||+|++|+.+..+.+|+..|+|.+||+||| |+|+||||+++|+++|++++. +..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~-l~~l~~ 157 (450)
T cd01596 79 GKLDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALAL-LERLLP 157 (450)
T ss_pred CcccCCCcccHHhccCcccccchHHHHHHHHHHHHhccccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHH-HHHHHH
Confidence 656788999999988999999999999998877888855677658999999 699999999999999999765 579999
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCc
Q 010908 196 NLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275 (497)
Q Consensus 196 ~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~ 275 (497)
.|..|+++|.++|++|++++||||||+|+|||+|||||+++|+++|.|+++||..++++++.+||||||+||++++++.|
T Consensus 158 ~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGg~A~Gt~~~~~~~~ 237 (450)
T cd01596 158 ALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAPPGY 237 (450)
T ss_pred HHHHHHHHHHHHHHHhcCCeeeccccccCCeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcceeCCCCCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCC
Q 010908 276 DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 355 (497)
Q Consensus 276 ~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP 355 (497)
+.++.+++|+.|||+.++.+|++||+++||++++++++++.++.+|+|||+||++|+|+||+|||||.+|+.++||||||
T Consensus 238 ~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~~e~~~~la~~~~~l~ria~Dl~~~ss~~~~e~gev~~~~~~~GSS~MP 317 (450)
T cd01596 238 AEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLPANQPGSSIMP 317 (450)
T ss_pred HHHHHHHHHHHhCCCCccCcCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCeeEECCCCCCCCCCCC
Confidence 99999999999999976889999999999999999999999999999999999999999999999999999899999999
Q ss_pred CCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHh
Q 010908 356 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 435 (497)
Q Consensus 356 ~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l 435 (497)
||+||+.+|.|+++|+++.|+..++.....++++|++...|.+.++++++++.+.+++..++..+++||+||++||++|+
T Consensus 318 qKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l 397 (450)
T cd01596 318 GKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYV 397 (450)
T ss_pred CCCCCHHHHHHHHHHHHHhccHHHHHHHhhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHH
Confidence 99999999999999999999999998788899999988888878899999999999999998899999999999999999
Q ss_pred hhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccC
Q 010908 436 HESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVV 488 (497)
Q Consensus 436 ~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ld 488 (497)
..+++++|+|++.+||+.|+++++++.++|++|+|++.+.+.|+++++++++|
T Consensus 398 ~~~~~~~t~LA~~lg~~~a~~~v~~a~~~g~~l~~~~~~~~~~~~~~l~~~~d 450 (450)
T cd01596 398 ENSLMLVTALNPHIGYEKAAEIAKEALKEGRTLREAALELGLLTEEELDEILD 450 (450)
T ss_pred HhCcchHHHHhHHHhHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999889999999999886
No 15
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=4e-82 Score=672.86 Aligned_cols=409 Identities=24% Similarity=0.315 Sum_probs=363.0
Q ss_pred cCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccccc
Q 010908 52 DKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQT 130 (497)
Q Consensus 52 ~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~ 130 (497)
+.+||.+.++++ |+ ++++|++|++||+|+|.||.++| ||++.+++|.++|++ ++|+++.+++
T Consensus 9 ~~~~~~~~~~~i--~s--------~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~-------~~~d~~~~~~ 71 (452)
T PRK09053 9 DLYFGSPAMRAI--FS--------DRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDA-------ERLDLDALAQ 71 (452)
T ss_pred hhhcCCHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccc-------cCCCHHHHHH
Confidence 459999999999 74 89999999999999999999999 999999999999975 4689999999
Q ss_pred CcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 131 GSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210 (497)
Q Consensus 131 g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~ 210 (497)
|++++.|..+.- + +.+.+.+|. .. .|+++|||+|+||||++||+++|++++. +..|.+.|..|+++|.+||++
T Consensus 72 ~~~~~~~~~~~l-v-~~l~~~~~~---~~-~~~~~~vH~G~SsnDi~~Ta~~l~lr~~-l~~l~~~l~~l~~~L~~~A~~ 144 (452)
T PRK09053 72 AAALAGNLAIPL-V-KQLTAQVAA---RD-AEAARYVHWGATSQDIIDTGLVLQLRDA-LDLLEPDLDRLCDALATLAAR 144 (452)
T ss_pred HHhhcCCchHHH-H-HHHHHHhcc---cC-cchhccccCCCChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999998865432 1 233444541 22 6899999999999999999999998765 579999999999999999999
Q ss_pred ccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCC
Q 010908 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP 290 (497)
Q Consensus 211 ~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~ 290 (497)
|++|+|+||||+|||+||||||||++|+++|.|+++||..++++++.+|||| ++||+ +..++++..+.+++++.|||+
T Consensus 145 ~~~t~~~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg-avGt~-~~~~~~~~~v~~~~a~~LGl~ 222 (452)
T PRK09053 145 HRATPMVGRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGG-AAGTL-ASLGEQALPVAQALAAELQLA 222 (452)
T ss_pred ccCCeeehhccCCcceechHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-hhhcc-cccccchHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999 69994 445678889999999999999
Q ss_pred CCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHHHHHH
Q 010908 291 FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTM 368 (497)
Q Consensus 291 ~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~~ 368 (497)
.+..+ |+++||++++++++|+.++++|+|||+||++|+ ++|||||.+|. +++||||||||+||+.+|.+++
T Consensus 223 ~~~~~----~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~---~~e~gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~ 295 (452)
T PRK09053 223 LPALP----WHTQRDRIAEFASALGLLAGTLGKIARDVSLLM---QTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLT 295 (452)
T ss_pred CCCCC----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchhhccccCCCCCcCCCCCCCCchHHHHHHH
Confidence 86555 358999999999999999999999999999999 67999998876 3799999999999999999999
Q ss_pred HHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHH-HHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHH-----
Q 010908 369 VCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSL-RLLGDASASFEKNCVRGIQANRERISKLLHESLMLV----- 442 (497)
Q Consensus 369 ~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~-~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~----- 442 (497)
+|+++.|+..++ +....+++|++.+.|.+.|..++.+ ..+..++..+ ..|++||+||++||++|++.+.+++
T Consensus 296 ~a~~v~g~~~~~-~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~al~~~-~~~l~~l~v~~erm~~~l~~s~~~~~ae~~ 373 (452)
T PRK09053 296 AATRAPGLVATL-FAAMPQEHERALGGWHAEWDTLPELACLAAGALAQM-AQIVEGLEVDAARMRANLDLTHGLILAEAV 373 (452)
T ss_pred HHHHHHHHHHHH-HHhChhhhcccCCccHHHHHHHHHHHHHHHHHHHHH-HHHHcCCEECHHHHHHHHHhcCCHHHHHHH
Confidence 999999999887 5567889999999999989555554 5555555555 5899999999999999999887665
Q ss_pred -HhhCccccHHHHHHH----HHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 443 -TSLNPKIGYDNAAAV----AKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 443 -t~La~~ig~~~A~~i----a~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
+.|++++||++||++ ++++.++|++|+|++.++ +.++++++++++||++|+|.
T Consensus 374 ~~~La~~lgr~~Ah~iV~~~~~~a~~~g~~~~~~~~~~~~~~~~l~~~~l~~~l~P~~~~g~ 435 (452)
T PRK09053 374 MLALADRIGRLDAHHLVEQASKRAVAEGRHLRDVLAEDPQVSAHLSPAALDRLLDPAHYLGQ 435 (452)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHCCCHHHHHHhChhhhccCCHHHHHHHcCHHHHhcc
Confidence 889999999999988 667888999999999986 67899999999999999985
No 16
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.2e-77 Score=639.50 Aligned_cols=411 Identities=22% Similarity=0.309 Sum_probs=362.1
Q ss_pred ccCccChH----hHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcc
Q 010908 51 SDKLWGAQ----TQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPL 125 (497)
Q Consensus 51 ~~~~~g~~----~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~ 125 (497)
.+++||++ +.++++||+++ . .+++.++++++.+++||+.++.+.| ||++++++|.++|+++.++...++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~~~~~~s-~--~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~al~~i~~~~~~~~~~~ 79 (459)
T PRK00855 3 SNKLWGGRFSEGPDELVERFTAS-I--SFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAGLDEILEEIEAGKFEF 79 (459)
T ss_pred cccccccCCCcchHHHHHHcccC-c--cchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccc
Confidence 45799987 99999999888 3 6789999999999999999999999 999999999999999998877789998
Q ss_pred cccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 126 VVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLH 205 (497)
Q Consensus 126 ~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~ 205 (497)
++ +++|+||| |++++++.+| +.|+| +| +|+||||+++|+++|++++.+ ..|.+.|..|+++|.
T Consensus 80 ~~----~~~d~~~~----ie~~l~~~~g-~~g~~-iH------~g~SrnD~~~Ta~~L~~r~~l-~~l~~~L~~l~~~L~ 142 (459)
T PRK00855 80 SP----ELEDIHMA----IEARLTERIG-DVGGK-LH------TGRSRNDQVATDLRLYLRDEI-DEIAELLLELQKALL 142 (459)
T ss_pred CC----CCCcHHHH----HHHHHHHHhc-cccCc-cc------CCCCHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 76 57888877 7899999999 77777 88 599999999999999998765 689999999999999
Q ss_pred HHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHH
Q 010908 206 SKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVA 284 (497)
Q Consensus 206 ~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la 284 (497)
++|++|++|+||||||+|||||+||||||++|+++|.|+++||..++++++.+||||+|+ ||+++.++ ++++
T Consensus 143 ~~A~~~~~t~m~GrTH~Q~A~P~T~G~~l~~~~~~L~r~~~rL~~~~~~~~~~plGgaag~gt~~~~~r-------~~~a 215 (459)
T PRK00855 143 DLAEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGSAALAGTTFPIDR-------ERTA 215 (459)
T ss_pred HHHHHcCCCEeecCcCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhcCCCCCcCH-------HHHH
Confidence 999999999999999999999999999999999999999999999999999999999887 88888776 5699
Q ss_pred HHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHH
Q 010908 285 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQC 363 (497)
Q Consensus 285 ~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~ 363 (497)
+.|||+. +..|++||+++||++++++++|+.++++|+|||+||++|+|+ |||||.+|+. ++||||||||+||+.+
T Consensus 216 ~~LG~~~-~~~n~~~a~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~ss~---e~gei~~p~~~~~gSSiMPqK~NP~~~ 291 (459)
T PRK00855 216 ELLGFDG-VTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSSQ---EFGFVELPDAFSTGSSIMPQKKNPDVA 291 (459)
T ss_pred HHcCCCC-CCCCHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---CCCeEeCCCCCCCCcCCCCCCCCCHHH
Confidence 9999998 789999999999999999999999999999999999999975 8999999986 6999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhcccc--cccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhH
Q 010908 364 EALTMVCAQVIGNHVAITVGGSNG--HFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLML 441 (497)
Q Consensus 364 E~i~~~a~~v~g~~~~~~~~~~~g--~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l 441 (497)
|.++++|+++.|+..++.....+. .++++... .-..+++++..+.+++..+. .|++||+||+++|++++..++++
T Consensus 292 E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rD~~~--~~~~l~~~~~~~~~al~~~~-~~l~~l~v~~~~m~~~l~~~~~~ 368 (459)
T PRK00855 292 ELIRGKTGRVYGNLTGLLTVMKGLPLAYNRDLQE--DKEPLFDAVDTLKLSLEAMA-GMLETLTVNKERMREAAGKGFST 368 (459)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCchHHhhhhhhh--hHHHHHHHHHHHHHHHHHHH-HHHccCEECHHHHHHHHHcchhH
Confidence 999999999999998887532222 22322211 11247788888999999996 59999999999999999999999
Q ss_pred HHhhCcc-----ccHHHHHH----HHHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 442 VTSLNPK-----IGYDNAAA----VAKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 442 ~t~La~~-----ig~~~A~~----ia~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
+|.+++. +||++||+ +++++.++|++++++..+. ..+.++++.+++||+.++..
T Consensus 369 at~la~~Lv~~gi~~r~Ah~~v~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 435 (459)
T PRK00855 369 ATDLADYLVRKGVPFREAHEIVGKAVREAEERGVDLADLSLEELQAFSPLITEDVYEVLTPEGSVAA 435 (459)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHhcccchHHHHHHhChHHHHHh
Confidence 8887764 56777765 5677889999999987753 33456778899999988753
No 17
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=2.7e-77 Score=634.25 Aligned_cols=407 Identities=25% Similarity=0.320 Sum_probs=352.3
Q ss_pred cCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccccc
Q 010908 52 DKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQT 130 (497)
Q Consensus 52 ~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~ 130 (497)
+.+||...++.+ |+ ++++|++|+.||+|++.++.+.| ||++++++|.++++++. +..+.+++
T Consensus 3 ~~~y~~~~~~~~--~s--------~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~~~-------~~~~~~~~ 65 (437)
T cd01597 3 GDLFGTPAMREI--FS--------DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVER-------LDLEALAE 65 (437)
T ss_pred ccccCCHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccC-------CCHHHHHH
Confidence 458999999999 74 88999999999999999999999 99999999999987751 12333444
Q ss_pred CcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 131 GSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210 (497)
Q Consensus 131 g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~ 210 (497)
+.+++.|.- ..++..+.+++|++.|+| +| +|+||||+++|+++|++++.+ ..+.+.|..|+++|.++|++
T Consensus 66 ~~~~~~~~v--~a~e~~l~e~~g~~~g~~-lH------~grSrnD~~~Ta~~l~lr~~l-~~l~~~l~~l~~~L~~~A~~ 135 (437)
T cd01597 66 ATARTGHPA--IPLVKQLTAACGDAAGEY-VH------WGATTQDIIDTALVLQLRDAL-DLLERDLDALLDALARLAAT 135 (437)
T ss_pred HHHHhCCCc--HHHHHHHHHHcCccccCe-ee------cCccHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444443332 135666778898666777 88 599999999999999998765 79999999999999999999
Q ss_pred ccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCC
Q 010908 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP 290 (497)
Q Consensus 211 ~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~ 290 (497)
|++++||||||+|||||+||||||++|+++|.|+++||..++++++.+|||| |+|||.+. +.++..+.+++++.|||+
T Consensus 136 ~~~~~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-a~Gtg~~~-~~~~~~~~~~~a~~LGf~ 213 (437)
T cd01597 136 HRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGG-AAGTLASL-GDQGLAVQEALAAELGLG 213 (437)
T ss_pred hcCCeeehhhcCccceechHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cccccccc-CCcHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999 88998754 456778899999999999
Q ss_pred CCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHHHHHH
Q 010908 291 FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTM 368 (497)
Q Consensus 291 ~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~~ 368 (497)
.+.. + |+++||++++++++++.++.+|+|||+||++|++ +|||||.+|+ .++||||||||+||+.+|.+++
T Consensus 214 ~~~~-~---~~~~rd~~~e~~~~l~~~a~~l~rla~Dl~l~s~---~e~gel~~~~~~~~~GSSiMPqK~NP~~~E~i~~ 286 (437)
T cd01597 214 VPAI-P---WHTARDRIAELASFLALLTGTLGKIARDVYLLMQ---TEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVA 286 (437)
T ss_pred CCCC-c---cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccceeecccCCCCCCCCCCCCCcCcHHHHHHHH
Confidence 9543 2 5799999999999999999999999999999994 6899999996 6999999999999999999999
Q ss_pred HHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHH------
Q 010908 369 VCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV------ 442 (497)
Q Consensus 369 ~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~------ 442 (497)
+|+++.|+.+++ +....++++++.+.|...|..++.+..+...+..+...|++||+||++||++++..+++++
T Consensus 287 ~a~~~~g~~~~~-~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~ 365 (437)
T cd01597 287 LARRVPGLAALL-LDAMVQEHERDAGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVM 365 (437)
T ss_pred HHHHHHHHHHHH-HHhchhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHH
Confidence 999999996665 4455689999988888888888665555555555667999999999999999998766554
Q ss_pred HhhCccccHHHHHHH----HHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 443 TSLNPKIGYDNAAAV----AKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 443 t~La~~ig~~~A~~i----a~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
..|++.+||++||++ ++++.++|++++|++.+. +.++++++++++||++|+|+
T Consensus 366 ~~l~~~i~~~~Ah~~v~~~~~~a~~~g~~~~~~~~~~~~~~~~l~~~~l~~~ldp~~~v~~ 426 (437)
T cd01597 366 MALAPKLGRQEAHDLVYEACMRAVEEGRPLREVLLEDPEVAAYLSDEELDALLDPANYLGS 426 (437)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhhccCCHHHHHHhcCHHHHhcc
Confidence 367778999999987 566788999999999876 67899999999999999986
No 18
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=4.6e-77 Score=634.88 Aligned_cols=411 Identities=20% Similarity=0.231 Sum_probs=361.3
Q ss_pred ccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCc
Q 010908 54 LWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGS 132 (497)
Q Consensus 54 ~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~ 132 (497)
+|+..+...+..|..+- ..+..+++....+++||+.++.+.| ||++++++|.++|+++..+...++|++++++
T Consensus 5 r~~~~~~~~~~~~~~~~---~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~al~~i~~~~~~~~~~~~~~~--- 78 (455)
T TIGR00838 5 RFTGGMDPRVAKFNASL---SFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGLNELKEEGREGPFILDPDD--- 78 (455)
T ss_pred cCCCCccHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCcCCCCCc---
Confidence 34434444455564222 3467788888889999999999999 9999999999999999988777889998876
Q ss_pred ccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 010908 133 GTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 212 (497)
Q Consensus 133 g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~ 212 (497)
+| +|.+|++++.+.+|++.|+| +| +|+||||+++|+++|++++.+ ..|.+.|..|+++|.++|++|+
T Consensus 79 -~d----~~~~ie~~l~e~~g~~~g~~-iH------~g~SrnD~~~Ta~~L~lr~~l-~~l~~~L~~l~~~L~~~A~~~~ 145 (455)
T TIGR00838 79 -ED----IHMAIERELIDRVGEDLGGK-LH------TGRSRNDQVATDLRLYLRDHV-LELAEALLDLQDALIELAEKHV 145 (455)
T ss_pred -Cc----HHHHHHHHHHHHhCCCccCC-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcc
Confidence 34 44569999999999777878 88 599999999999999998775 6899999999999999999999
Q ss_pred CcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHHHcCCCC
Q 010908 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPF 291 (497)
Q Consensus 213 ~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~LGl~~ 291 (497)
+++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||||+ ||+++.++ +++++.|||+.
T Consensus 146 ~~~m~grTH~Q~A~P~T~G~~~~~~~~~L~r~~~rL~~~~~~~~~~plGg~a~aGt~~~~~r-------~~~a~~LG~~~ 218 (455)
T TIGR00838 146 ETLMPGYTHLQRAQPITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAGTGFPIDR-------EYLAELLGFDA 218 (455)
T ss_pred CCEeecccccccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhcccCCCCCCCH-------HHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999998 99988776 46999999999
Q ss_pred CCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHHHHHHH
Q 010908 292 VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVC 370 (497)
Q Consensus 292 ~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~i~~~a 370 (497)
+..|++||+++||++++++++++.++++|+|||+||++|+|+ |||||.+|+. ++||||||||+||+.+|.++++|
T Consensus 219 -~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~---e~gei~lp~~~~~GSSiMP~K~NP~~~E~i~~~a 294 (455)
T TIGR00838 219 -VTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTG---EFGFVELPDEFSSGSSIMPQKKNPDVAELIRGKT 294 (455)
T ss_pred -CcCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCeeeCCCCCCCccCCCCCCcCChHHHHHHHHH
Confidence 588999999999999999999999999999999999999986 6999999987 89999999999999999999999
Q ss_pred HHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHHhhCcc--
Q 010908 371 AQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPK-- 448 (497)
Q Consensus 371 ~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~-- 448 (497)
+++.|+..++..+..++++++|...+.....+++++..+..++..+. .|++||+||++||++++..+++++|.+++.
T Consensus 295 ~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~al~~~~-~~i~~l~v~~~rm~~~~~~~~~~at~la~~Lv 373 (455)
T TIGR00838 295 GRVQGNLTGMLMTLKALPLAYNRDLQEDKEPLFDALKTVELSLEMAT-GMLDTITVNKERMEEAASAGFSNATELADYLV 373 (455)
T ss_pred HHHhhhHHHHHHHHhcCChHhhhhhHhhHHHHHHHHHHHHHHHHHHH-HHHccCEECHHHHHHHHHcCccHHHHHHHHHH
Confidence 99999999998877777777666656555678899999999999997 599999999999999999999988877663
Q ss_pred ---ccHHHHHH----HHHHHHHcCCCHHHHHHHcCC----CCHHHHhhccCcccccCC
Q 010908 449 ---IGYDNAAA----VAKKAHKEGTTLKDAALKLGV----LNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 449 ---ig~~~A~~----ia~~a~~~g~~l~e~~~~~~~----l~~~el~~~ldp~~~~g~ 495 (497)
+||++||+ +++++.++|++++|++.+... +.++++++++||+.++..
T Consensus 374 ~~g~~~r~Ah~~v~~~~~~a~~~g~~l~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~ 431 (455)
T TIGR00838 374 RKGVPFREAHHIVGELVATAIERGKGLEELTLEELQKFSPEFDEDVYEALDPESSVEK 431 (455)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCHHHHHHHCCHHHHHHh
Confidence 57777765 556688999999999887532 456779999999999853
No 19
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=1.1e-75 Score=621.39 Aligned_cols=404 Identities=25% Similarity=0.298 Sum_probs=351.3
Q ss_pred cCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccc--
Q 010908 52 DKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVW-- 128 (497)
Q Consensus 52 ~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~-- 128 (497)
|.+||.+.++++ |+ +++++++|+.+++|++.++.+.| ||++++++|.+++ ++.. +.+..+
T Consensus 2 ~~~y~~~~~~~i--fs--------~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~-~~~~------~d~~~l~~ 64 (435)
T TIGR00928 2 DERYGTPEMRAI--WS--------EENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAKA-NFTD------VDLARIKE 64 (435)
T ss_pred CcccCcHHHHHH--hC--------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhC-CCCc------cCHHHHHH
Confidence 569999999999 74 78999999999999999999999 9999999998872 2210 011110
Q ss_pred -ccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 129 -QTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSK 207 (497)
Q Consensus 129 -q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~ 207 (497)
....+.+ + ..+++.+.+.+| +.|+| || +|+||||+++|+++|++++. +..+.+.|..|+++|.++
T Consensus 65 ~~~~~~~~----v-~~~e~~l~~~~g-~~~~~-vh------~g~SsnD~~~Ta~~l~lr~~-l~~l~~~l~~l~~~L~~~ 130 (435)
T TIGR00928 65 IEAVTRHD----V-KAVVYALKEKCG-AEGEF-IH------FGATSNDIVDTALALLLRDA-LEIILPKLKQLIDRLKDL 130 (435)
T ss_pred HHHHHCcC----h-HHHHHHHHHHhh-hhhhh-ee------ecccHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 0001111 2 346788888888 66777 77 59999999999999999876 579999999999999999
Q ss_pred HHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHc
Q 010908 208 SVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEET 287 (497)
Q Consensus 208 A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~L 287 (497)
|++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+|+|| |+||+++++++| ..+.+++++.|
T Consensus 131 A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgG-a~Gt~~~~~~~~-~~~~~~~a~~L 208 (435)
T TIGR00928 131 AVEYKDTVMLGRTHGQHAEPTTLGKKFALWADEMKRQLERLLQAKERIKVGGISG-AVGTHAAAYPLV-EEVEERVTEFL 208 (435)
T ss_pred HHHHccchHhHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-hhhhHhhccccH-HHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988 899999999887 78999999999
Q ss_pred CCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC--CCCCCCCCCCCChhHHHH
Q 010908 288 SLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN--EPGSSIMPGKVNPTQCEA 365 (497)
Q Consensus 288 Gl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~--~~GSSiMP~K~NP~~~E~ 365 (497)
||+.++.+| ++++||++++++++|+.++.+|+|||+||++|++ +||+|+.+|.. ++||||||||+||+.+|+
T Consensus 209 Gl~~~~~~~---~~~~rD~~~e~~~~l~~la~~L~ria~Dl~l~s~---~~~~el~~~~~~~~~GSS~MP~K~NP~~~E~ 282 (435)
T TIGR00928 209 GLKPVPIST---QIEPRDRHAELLDALALLATTLEKFAVDIRLLQR---TEHFEVEEPFGKGQVGSSAMPHKRNPIDFEN 282 (435)
T ss_pred CCCCCCCCc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccceecccCCCCCCcCCCCcCcCcHHHHH
Confidence 999965443 6799999999999999999999999999999995 58999999863 899999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHH--
Q 010908 366 LTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT-- 443 (497)
Q Consensus 366 i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t-- 443 (497)
++++|+++.|+...+.. ...+++|++...|.+.|++++++..+..++..+...|++||+||++||+++++.++++++
T Consensus 283 i~~~a~~~~g~~~~~~~-~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~a~ 361 (435)
T TIGR00928 283 VCGLARVIRSVLSPALE-NVPLWHERDLTDSSVERIILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASE 361 (435)
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHhHH
Confidence 99999999999877654 346789999999999999899999999999999899999999999999999998777432
Q ss_pred h----hCc-cccHHHHHHH----HHHHHH-cCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 444 S----LNP-KIGYDNAAAV----AKKAHK-EGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 444 ~----La~-~ig~~~A~~i----a~~a~~-~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
. |+. .+||++||++ ++.+.+ +|.++++++.++ +.++++++++++||++|+|.
T Consensus 362 ~la~~L~~~g~g~~~Ah~~v~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 427 (435)
T TIGR00928 362 RVLIALVERGMGREEAYEIVRELAMGAAEVDEPDLLEFLLADERITKYLKEEELAELLDPETYIGN 427 (435)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHcccccHHHHHhhCccchhhcCHHHHHHcCCHHHHhCh
Confidence 2 444 6999999984 566777 899999998886 57899999999999999985
No 20
>PLN02646 argininosuccinate lyase
Probab=100.00 E-value=1.9e-75 Score=622.27 Aligned_cols=409 Identities=22% Similarity=0.283 Sum_probs=352.2
Q ss_pred CccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccc
Q 010908 53 KLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVV 127 (497)
Q Consensus 53 ~~~g~----~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~ 127 (497)
++||+ .+.+.+..|..|- .+|..+++.-+.+.+||++++.+.| ||++++++|.++|++|.++...++|++++
T Consensus 17 ~~w~~r~~~~~~~~~~~~~~s~---~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~al~~i~~~~~~~~f~~~~ 93 (474)
T PLN02646 17 KLWGGRFEEGVTPAVEKFNESI---SFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDGLDEIEKEIEAGKFEWRP 93 (474)
T ss_pred hhhcCCCCCCccHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcCCC
Confidence 46765 4666677785443 3567788888889999999999999 99999999999999999887778888543
Q ss_pred cccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 128 WQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSK 207 (497)
Q Consensus 128 ~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~ 207 (497)
+ .+++||| ||+++++++| +.|+| +|+ ||||||+++|+++|++++.+ ..|.+.|..|+++|.++
T Consensus 94 ---~-~ed~h~~----iE~~L~e~~G-~~g~~-lH~------grSrND~v~Ta~~L~lr~~l-~~l~~~L~~L~~~L~~~ 156 (474)
T PLN02646 94 ---D-REDVHMN----NEARLTELIG-EPAKK-LHT------ARSRNDQVATDTRLWCRDAI-DVIRKRIKTLQVALVEL 156 (474)
T ss_pred ---C-CCchHHH----HHHHHHHHhc-hhhCc-ccC------CCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3 3788887 6789999999 67888 884 99999999999999998775 69999999999999999
Q ss_pred HHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHHH
Q 010908 208 SVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEE 286 (497)
Q Consensus 208 A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~ 286 (497)
|++|++++||||||+|||||+||||||++|+++|.|+++||..++++++.+||||||+ ||++++++ +++|++
T Consensus 157 A~~~~dtvmpGrTHlQ~AqPiT~G~~l~~~~~~l~rd~~RL~~~~~r~~~~pLGgga~aGt~~~idr-------~~~A~~ 229 (474)
T PLN02646 157 AEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDCRPRVNFCPLGSCALAGTGLPIDR-------FMTAKD 229 (474)
T ss_pred HHHcCCCEEecccCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhcCCCCCCCH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 99988887 569999
Q ss_pred cCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHH
Q 010908 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEA 365 (497)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~ 365 (497)
|||.. +..|.+|++++||++++++++++.++.+|+|||+||++|+|+ |||||.+|+. ++||||||||+||+.+|.
T Consensus 230 LGf~~-~~~n~~da~~~RD~~~e~~~~la~ia~~LsRia~Dl~l~ss~---e~g~v~~~d~~~~GSSiMPqKrNP~~~E~ 305 (474)
T PLN02646 230 LGFTA-PMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASE---EFGFVTPSDAVSTGSSIMPQKKNPDPMEL 305 (474)
T ss_pred hCCCC-CCCChHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCeeeeCCCCCCCcCCCCCCCCCHHHHH
Confidence 99977 788999999999999999999999999999999999999975 7999999875 999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhcccc--cccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHH
Q 010908 366 LTMVCAQVIGNHVAITVGGSNG--HFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT 443 (497)
Q Consensus 366 i~~~a~~v~g~~~~~~~~~~~g--~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t 443 (497)
++++|+++.|+.+++.....+- .++++... .-..+++++..+.+++..+. .|+++|+||++||++++..+++++|
T Consensus 306 ir~~a~~v~G~~~~~~~~~~~~p~~~~rD~q~--~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~rm~~~l~~~~~~At 382 (474)
T PLN02646 306 VRGKSARVIGDLVTVLALCKGLPTAYNRDLQE--DKEPLFDSVDTVSDMLEVAT-EFAQNITFNPERIKKSLPAGMLDAT 382 (474)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchHhhcchhh--HHHHHHHHHHHHHHHHHHHH-HHHccCEECHHHHHHHHHcCccHHH
Confidence 9999999999999887543221 22222110 01237788888999998886 5999999999999999999988888
Q ss_pred hhCc-----cccHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 444 SLNP-----KIGYDNAAAVA----KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 444 ~La~-----~ig~~~A~~ia----~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
.|++ .+||++||+++ +.+.++|++|.|+..+. ....++++.+++||+..+..
T Consensus 383 ~la~~Lv~~Gi~fr~Ah~iV~~~v~~a~~~g~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 447 (474)
T PLN02646 383 TLADYLVRKGVPFRETHHIVGAAVALAESKGCELSDLTLEDLKSINPVFEEDVYEVLGVENSVEK 447 (474)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccchHHHHHhCCHHHHHHH
Confidence 7654 38999999754 56788899999987653 33457779999999988753
No 21
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=3.2e-75 Score=619.78 Aligned_cols=409 Identities=26% Similarity=0.305 Sum_probs=348.6
Q ss_pred ccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH--HHccccCCCCcc
Q 010908 49 VPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQE--VAEGKLNDHFPL 125 (497)
Q Consensus 49 ~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~e--v~~~~~~~~f~~ 125 (497)
.|.+.+||.+.++++ |+ +++++++|++|+.|++.++.+.| ||++++++|.+++.+ +..... ....
T Consensus 4 ~~~~~~~~~~~~~~~--~s--------~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~-~~~~- 71 (449)
T PRK08540 4 HPIDYRYGTPEMKRV--WS--------EENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERV-KEIE- 71 (449)
T ss_pred CCcCcccCCHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHH-HHHH-
Confidence 478889999999999 74 89999999999999999999999 999999999999976 431110 0000
Q ss_pred cccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 126 VVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLH 205 (497)
Q Consensus 126 ~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~ 205 (497)
. ..+.+ .+ .+++.+.+.+|++.|+| +| +|+||||+++|+++|++++.+ ..+.+.|..|+++|.
T Consensus 72 -~---~~~~~-v~----~~e~~L~~~~~~~~~~~-vH------~g~S~nDi~~Ta~~L~lr~~l-~~l~~~L~~l~~~L~ 134 (449)
T PRK08540 72 -A---EIHHD-IM----AVVKALSEVCEGDAGEY-VH------FGATSNDIIDTATALQLKDSL-EILEEKLKKLRGVLL 134 (449)
T ss_pred -H---HhCCC-cH----HHHHHHHHHhhhhhhcc-ee------cCccHhhHHhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 0 01111 12 36777888886577888 88 599999999999999997665 799999999999999
Q ss_pred HHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHH
Q 010908 206 SKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAE 285 (497)
Q Consensus 206 ~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~ 285 (497)
++|++|++++||||||+|||||+||||||++|+++|.|+++||..++++++.+|||| ||||+.. .++++..+.+++++
T Consensus 135 ~~A~~~~~~~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-avGt~~a-~~~~~~~i~~~~a~ 212 (449)
T PRK08540 135 KKAEEHKNTVCIGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRVCVGQMTG-AVGTQAA-FGEKGIEIQKRVME 212 (449)
T ss_pred HHHHHhcCCchhhhcCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHhhheccccc-cccchhh-CCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 9999864 35677788899999
Q ss_pred HcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEc--CCCCCCCCCCCCCCChhHH
Q 010908 286 ETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL--PENEPGSSIMPGKVNPTQC 363 (497)
Q Consensus 286 ~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~l--p~~~~GSSiMP~K~NP~~~ 363 (497)
.|||+.+..+| ++++||++++++++++.++++|+|||+||++|+ ++|||||.+ |++++||||||||+||+.+
T Consensus 213 ~LGl~~~~~~~---~~~~rd~~~e~~~~l~~~a~~l~kia~Dl~l~s---~~e~gei~e~~~~~~~GSSiMP~K~NP~~~ 286 (449)
T PRK08540 213 ILGLKPVLISN---QVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQ---RTEIGEVEEEFGKKQVGSSTMPHKRNPITS 286 (449)
T ss_pred HcCCCCCCCcC---CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhcccCCCCCCcCCCCCCcCcHHH
Confidence 99999965544 479999999999999999999999999999999 579999985 5679999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhH--
Q 010908 364 EALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLML-- 441 (497)
Q Consensus 364 E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l-- 441 (497)
|.++++|+++.|....+.. ....+++++...+.+.|.+++.+..+.+++..+...|++||+||++||+++++.+.++
T Consensus 287 E~i~~~a~~~~g~~~~~~~-~~~~~~~rd~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ 365 (449)
T PRK08540 287 EQICGLARVVRSNVEPALL-NNPLWDERDLTNSSCERIIFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIM 365 (449)
T ss_pred HHHHHHHHHHHHHHHHHHh-cchhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcCHHH
Confidence 9999999999999866543 3333456666666777889998889999999888999999999999999999865444
Q ss_pred HHh----hCc-cccHHHHHHH----HHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 442 VTS----LNP-KIGYDNAAAV----AKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 442 ~t~----La~-~ig~~~A~~i----a~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
++. |.. .+||++||++ ++.+.++|++|+|++.+. +.+++++|++++||++|+|+
T Consensus 366 ae~la~~L~~~glg~~~Ah~~v~~l~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~g~ 432 (449)
T PRK08540 366 AEAVMIELAKRGMGRQEAHELVRQAAMKAHEEGRHLKEVLLEDEEVMKYLTEEELEELLDPETYIGT 432 (449)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhhccCCHHHHHHHcCHHHhcCc
Confidence 332 343 6999999764 556888999999998876 67899999999999999996
No 22
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-74 Score=597.17 Aligned_cols=406 Identities=24% Similarity=0.326 Sum_probs=358.9
Q ss_pred CccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccc
Q 010908 53 KLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVV 127 (497)
Q Consensus 53 ~~~g~----~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~ 127 (497)
++||+ .+...+..|+.|. ..|..+.+.=+....||+.++.+.| |++++++.|.+++.+|.++...+.|.+++
T Consensus 4 ~lwggRf~~~~~~~~~~~~~Si---~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~ 80 (459)
T COG0165 4 KLWGGRFSGGPDPLVKEFNASI---SFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDP 80 (459)
T ss_pred CCCCCCccCCCcHHHHHHhccc---hhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 56764 5556677888774 4577777777778999999999999 99999999999999998776666777765
Q ss_pred cccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 128 WQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSK 207 (497)
Q Consensus 128 ~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~ 207 (497)
- ..++|..||+++++++| +.|+| +|+ ||||||++.|.++||+++++ ..|...+..|+++|.++
T Consensus 81 ~--------~EDvH~aiE~~L~~~iG-~~ggk-Lht------gRSRNDQVatd~rL~lr~~~-~~l~~~i~~l~~aL~~~ 143 (459)
T COG0165 81 D--------DEDVHTAIEARLIERIG-DVGGK-LHT------GRSRNDQVATDLRLWLRDKL-LELLELIRILQKALLDL 143 (459)
T ss_pred c--------cccHHHHHHHHHHHHHh-hhhch-hcc------ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3 23466679999999999 89999 997 89999999999999999886 69999999999999999
Q ss_pred HHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHHH
Q 010908 208 SVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEE 286 (497)
Q Consensus 208 A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~ 286 (497)
|++|.+++||||||+|+|||+|||||+.+|++.|.||++||..++++++.+|||.||. ||+++++| +++|+.
T Consensus 144 Ae~~~~~imPGyTHlQ~AQPvtf~H~llay~~~l~RD~~Rl~d~~~rvn~sPLGagAlaGt~~~iDR-------~~tA~l 216 (459)
T COG0165 144 AEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGAGALAGTPFPIDR-------ERTAEL 216 (459)
T ss_pred HHHccCCccCCcccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 99999999 679999
Q ss_pred cCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHH
Q 010908 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEA 365 (497)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~ 365 (497)
|||+. +..|++|++++||+++|+++++++++.+|+|||+||.+|+|+ |||+|.+|+. ++||||||||+||+.+|+
T Consensus 217 LGF~~-~~~Nsldavs~Rdf~le~l~~~s~~~~~LSRlaedlI~wss~---EfgfI~l~D~~sTGSSIMPQKKNPD~~EL 292 (459)
T COG0165 217 LGFDA-VTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSP---EFGFIELPDEFSTGSSIMPQKKNPDVLEL 292 (459)
T ss_pred cCCch-hhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cCceEeCCcccccccccCCCCCCCcHHHH
Confidence 99999 799999999999999999999999999999999999999985 8999999997 999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhcccc----cccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhH
Q 010908 366 LTMVCAQVIGNHVAITVGGSNG----HFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLML 441 (497)
Q Consensus 366 i~~~a~~v~g~~~~~~~~~~~g----~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l 441 (497)
+|+++++|.|+.++++.....- +.|++..+. .+++++..+.+++..++ .++++|+||+++|++.+...+++
T Consensus 293 iRgk~grv~G~l~~ll~~~k~lPlaYnrDlQedke----~lfds~~t~~~~l~~~~-~mv~~l~vn~e~~~~a~~~gfs~ 367 (459)
T COG0165 293 IRGKAGRVIGALTGLLTIMKGLPLAYNRDLQEDKE----PLFDSVDTLEDSLRVLA-GMVSGLTVNKERMREAAEAGFST 367 (459)
T ss_pred HHHhhhhhHHHHHHHHHHHhcCcccccHHHHhhhH----HHHHHHHHHHHHHHHHH-HHHccCeeCHHHHHHHhhcccch
Confidence 9999999999999987764333 333444453 38899999999999996 79999999999999999999999
Q ss_pred HHhhCcc-----ccHHHHHHH----HHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccC
Q 010908 442 VTSLNPK-----IGYDNAAAV----AKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIG 494 (497)
Q Consensus 442 ~t~La~~-----ig~~~A~~i----a~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g 494 (497)
+|+||++ ++|++||++ |+.+.+.|++|.+...+. +.+-++++.++++|+..+.
T Consensus 368 aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~~~~l~~l~~~~~~~~~~~~~~dv~~~l~~~~~v~ 433 (459)
T COG0165 368 ATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVA 433 (459)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCHHhccHHHHhhhccccchHHHHHhchHHHHH
Confidence 9998875 689999864 567788888888776653 3455678888898887654
No 23
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=100.00 E-value=3.4e-74 Score=610.47 Aligned_cols=388 Identities=22% Similarity=0.270 Sum_probs=338.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 010908 75 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 153 (497)
Q Consensus 75 ~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg 153 (497)
.+++++++|+.|++|+|.++.+.| ||++++++|.++|+++.++...+.|+.++ .+++.++++++++ .+.+|
T Consensus 4 ~d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~~~~~~~~~----~~~~~~~~~e~~l----~~~~g 75 (435)
T cd01359 4 FDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDP----EDEDIHMAIERRL----IERIG 75 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccCCC----CCCcHHHHHHHHH----HHHHH
Confidence 478999999999999999999999 99999999999999987655567777765 4567788765554 56666
Q ss_pred ccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhh
Q 010908 154 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQE 233 (497)
Q Consensus 154 ~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~ 233 (497)
+.|+| || +|+||||+++|+++|++++.+ ..+.+.|..|+++|.++|++|++|+||||||+|||||+|||||
T Consensus 76 -~~~~~-iH------~G~SsnDi~~Ta~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~ 146 (435)
T cd01359 76 -DVGGK-LH------TGRSRNDQVATDLRLYLRDAL-LELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHY 146 (435)
T ss_pred -HHHhh-hh------ccCCHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCEecCCCCCccceeccHHHH
Confidence 66777 88 599999999999999998765 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHH
Q 010908 234 FSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 312 (497)
Q Consensus 234 ~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~ 312 (497)
|++|+++|.|+++||..++++++.+||||++. ||+++.++ +++++.|||+. +..|.++++++||+++++++
T Consensus 147 ~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaag~gt~~~~~~-------~~~a~~LG~~~-~~~~~~~a~~~rd~~~e~~~ 218 (435)
T cd01359 147 LLAYAEMLERDLERLADAYKRVNVSPLGAGALAGTTFPIDR-------ERTAELLGFDG-PTENSLDAVSDRDFVLEFLS 218 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCCcccccccCCCCCCCH-------HHHHHHcCCCC-CccCHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999665 77776655 67999999996 67888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhccc----c
Q 010908 313 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSN----G 387 (497)
Q Consensus 313 ~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~----g 387 (497)
+|+.++++|+|||+||++|+|+ |||||.+|+. ++||||||||+||+.+|.++++|+++.|+..++..+..+ +
T Consensus 219 ~l~~~a~~l~ria~Dl~l~~~~---e~gev~lpe~~~~GSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~ 295 (435)
T cd01359 219 AAALLMVHLSRLAEDLILWSTQ---EFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAY 295 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC---CCCeeeCCCCCCCccccCCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcCCCCcc
Confidence 9999999999999999999975 6999999987 599999999999999999999999999999988776532 3
Q ss_pred cccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHHhhCc------cccHHHHHH----H
Q 010908 388 HFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNP------KIGYDNAAA----V 457 (497)
Q Consensus 388 ~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~------~ig~~~A~~----i 457 (497)
+.+.+...+ ++++++..+..++..+. .++++|+||++||++++..++++++.+++ .+||++||+ +
T Consensus 296 ~~d~~~~~~----~l~~~~~~~~~al~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~l~~~l~~~~g~~~r~Ah~~v~~~ 370 (435)
T cd01359 296 NKDLQEDKE----PLFDAVDTLIASLRLLT-GVISTLTVNPERMREAAEAGFSTATDLADYLVREKGVPFREAHHIVGRA 370 (435)
T ss_pred chhHHHhhH----HHHHHHHHHHHHHHHHH-HHHhhCEECHHHHHHHHhcCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 444444332 46777888888888886 69999999999999999988888877653 378888876 4
Q ss_pred HHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 458 AKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 458 a~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
++++.++|+++.|++.+. +.++++++++++||++|++.
T Consensus 371 ~~~a~~~g~~~~~~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 412 (435)
T cd01359 371 VRLAEEKGKDLSDLTLAELQAISPLFEEDVREALDPENSVER 412 (435)
T ss_pred HHHHHHcCCChhhcCHHHHHhhcccCHHHHHHhCCHHHHHHh
Confidence 567788999999987765 78899999999999999964
No 24
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=8e-73 Score=596.85 Aligned_cols=404 Identities=19% Similarity=0.223 Sum_probs=337.0
Q ss_pred cCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccccc
Q 010908 52 DKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQT 130 (497)
Q Consensus 52 ~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~ 130 (497)
..+||.+.++++ |+ +++++++|++||.|+|.|+.++| ||++.+++|.++|... .|.+..+..
T Consensus 2 ~~~y~~~~~~~i--~s--------~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~~-------~~d~~~~~~ 64 (435)
T PRK07492 2 IPRYSRPEMVAI--WE--------PETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDA-------EFDVARIDE 64 (435)
T ss_pred CcccCcHHHHHH--cC--------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCccc-------CCCHHHHHH
Confidence 368999999999 74 78999999999999999999999 9999999998876320 011111111
Q ss_pred CcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 131 GSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210 (497)
Q Consensus 131 g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~ 210 (497)
... .++.++- .+.+.+.+.+| +.|+| || +|+||||++||+++|++++. +..+.+.|..++++|.++|++
T Consensus 65 ~~~-~~~h~v~-a~~~~L~~~~g-~~~~~-vH------~G~Ts~Di~dTa~~L~lr~~-~~~l~~~l~~l~~~L~~~A~~ 133 (435)
T PRK07492 65 IEA-VTKHDVI-AFLTHLAEFVG-PDARF-VH------QGMTSSDVLDTCLNVQLVRA-ADLLLADLDRVLAALKKRAFE 133 (435)
T ss_pred HHH-HhCCChH-HHHHHHHHHhh-Hhhhh-hc------CCCChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 100 0111111 13466778887 45778 88 59999999999999999765 579999999999999999999
Q ss_pred ccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCC
Q 010908 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP 290 (497)
Q Consensus 211 ~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~ 290 (497)
|+||+||||||+|||+|||||+||++|+++|.|+++||..++++++.+|||| |+||+++++ +.+.+++++.|||+
T Consensus 134 ~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~~~~lgG-AvGT~~~~~----~~~~~~~a~~LGl~ 208 (435)
T PRK07492 134 HKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAREEIATCAISG-AVGTFANID----PRVEEHVAKKLGLK 208 (435)
T ss_pred cCCCEEeeccCCccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcc-cccCCccCC----hHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999987 899988776 46889999999999
Q ss_pred CCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CCCCCCCCCCCCCChhHHHHHHH
Q 010908 291 FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTM 368 (497)
Q Consensus 291 ~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~~~GSSiMP~K~NP~~~E~i~~ 368 (497)
.++.++ ++++||++++++++|+.++++|+|||+||++|+ ++||+|+.+| ++++|||+||||+||+.+|.+++
T Consensus 209 ~~~~~~---~v~~RD~~~e~~~~la~~~~~L~ria~Di~~l~---~~e~~El~e~~~~g~~GSS~MPhKrNP~~~E~i~~ 282 (435)
T PRK07492 209 PEPVST---QVIPRDRHAMFFATLGVIASSIERLAIEIRHLQ---RTEVLEAEEFFSPGQKGSSAMPHKRNPVLTENLTG 282 (435)
T ss_pred CCCccc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchhccccCCCCCCCCCCCCCCCcHHHHHHHH
Confidence 854443 268999999999999999999999999999999 5799999975 46899999999999999999999
Q ss_pred HHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHh--H----H
Q 010908 369 VCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLM--L----V 442 (497)
Q Consensus 369 ~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~--l----~ 442 (497)
+++.+.|+..++.. ....++|++...+...|.+++.+..+.+.+......+++||+||++||++|++.+.+ + +
T Consensus 283 ~a~~~~~~~~~~~~-~~~~~~eRD~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~ 361 (435)
T PRK07492 283 LARLVRSYVVPAME-NVALWHERDISHSSVERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVL 361 (435)
T ss_pred HHHHHHHHHHHHHH-hcchhhccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhcCChhHHHHHH
Confidence 99999999655543 334566777666677788888888877777777679999999999999999986333 2 3
Q ss_pred HhhCcc-ccHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 443 TSLNPK-IGYDNAAAVA----KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 443 t~La~~-ig~~~A~~ia----~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
..|++. +|+++||+++ +++.++|.+|+|.+.++ +.++++||++++||++|+|.
T Consensus 362 ~~L~~~g~~r~~Ah~~V~~~~~~a~~~~~~l~e~l~~~~~~~~~l~~~el~~~~dp~~ylg~ 423 (435)
T PRK07492 362 LALTQAGVSREDAYRLVQRNAMKVWEQGGDFLEELKADPEVRAALSEEEIEELFDLGYHTKH 423 (435)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhCCHHhHhcCCHHHHHHHhCHHHHhcc
Confidence 456775 8999999765 45677899999999875 57899999999999999995
No 25
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.5e-72 Score=596.84 Aligned_cols=398 Identities=20% Similarity=0.233 Sum_probs=335.6
Q ss_pred ccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH-HHHccccCCCCcccccccC
Q 010908 54 LWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQ-EVAEGKLNDHFPLVVWQTG 131 (497)
Q Consensus 54 ~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~-ev~~~~~~~~f~~~~~q~g 131 (497)
+|+.+.++.+ |+ +++++++|++|++|++.++.++| ||++++++|.++++ ++.+ +......
T Consensus 4 ~y~~~~~~~i--~s--------~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~~d~~~--------~~~~~~~ 65 (442)
T PRK08470 4 RYAREEMKKK--WT--------MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIAR--------IDEIEKT 65 (442)
T ss_pred ccCcHHHHHH--cC--------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccchHH--------HHHHHHc
Confidence 8999999999 74 89999999999999999999999 99999999999873 1110 0000001
Q ss_pred cccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010908 132 SGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211 (497)
Q Consensus 132 ~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~ 211 (497)
.+. ++... ...+.+.+| +.|+| || +|+||||++||+++|++++.+ ..+.+.|..|+++|.++|++|
T Consensus 66 ~~~----dv~~~-v~~L~e~~g-~~~~~-vH------~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~lA~~~ 131 (442)
T PRK08470 66 TKH----DLIAF-LTSVSESLG-EESRF-VH------YGMTSSDCIDTAVALQMRDSL-KLIIEDVKNLMEAIKKRALEH 131 (442)
T ss_pred cCC----ChHHH-HHHHHHHcc-ccccc-ee------cCCChhchHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 111 22222 255677887 55777 88 599999999999999997664 799999999999999999999
Q ss_pred cCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCC
Q 010908 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 291 (497)
Q Consensus 212 ~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~ 291 (497)
++|+||||||+|||+|||||||+++|+++|.|+++||.+++++++.+|||| |+||+.+.+ ..+.+++++.|||+.
T Consensus 132 ~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~~lgG-AvGt~a~~~----~~v~~~~a~~LGl~~ 206 (442)
T PRK08470 132 KDTLMVGRSHGIHGEPITFGLVLAIWYDEIKRHLKALEHTMEVISVGKISG-AMGNFAHAP----LELEELVCEELGLKP 206 (442)
T ss_pred CCCeeecccCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc-hhcccccCC----hHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999977 999987654 467799999999998
Q ss_pred CCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CCCCCCCCCCCCCChhHHHHHHHH
Q 010908 292 VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMV 369 (497)
Q Consensus 292 ~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~~~GSSiMP~K~NP~~~E~i~~~ 369 (497)
++.+| ++++||+++|++++|+.++++|+|||+||++|+ ++||+|+.+| ++++|||||||||||+.+|.++++
T Consensus 207 ~~~~~---~v~~RD~~~e~~~~La~~a~~L~ria~Di~~l~---~~E~~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~ 280 (442)
T PRK08470 207 APVSN---QVIQRDRYARLASALALLASSCEKIAVAIRHLQ---RTEVYEAEEYFSKGQKGSSAMPHKRNPVLSENITGL 280 (442)
T ss_pred CCCCC---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccceecccCCCCCCCcCCCCCCcCcHHHHHHHHH
Confidence 77777 469999999999999999999999999999999 5699999986 468999999999999999999999
Q ss_pred HHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhh--HhHH----H
Q 010908 370 CAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHES--LMLV----T 443 (497)
Q Consensus 370 a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s--~~l~----t 443 (497)
|+.+.|+...+.. ....++|++...+...|..++.+..+.+.+......+++||+||++||++|++.+ +.++ .
T Consensus 281 a~~~~~~~~~~~~-~~~~~~eRD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl~~~~g~~~ae~l~~ 359 (442)
T PRK08470 281 CRVIRSFATPALE-NVALWHERDISHSSVERFILPDAFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLL 359 (442)
T ss_pred HHHHHHHHHHHHH-hchHhhccCCchhHHHhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccChHHHHHHHH
Confidence 9999999655543 3445677777667777888888878777777777899999999999999999763 3333 3
Q ss_pred hhCcc-ccHHHHHHHHH----HHHHc---CCC---------HHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 444 SLNPK-IGYDNAAAVAK----KAHKE---GTT---------LKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 444 ~La~~-ig~~~A~~ia~----~a~~~---g~~---------l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
.|++. +||++||+++. ++.++ |++ |+|.+.++ +.+++++|++++||+.|+|.
T Consensus 360 ~L~~~G~~~~~Ah~~V~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~dp~~~~g~ 432 (442)
T PRK08470 360 ELPKKGVSREDAYKIVQRNAMKVWEDLQQGKAAINEKGESLFLQALLNDEDLRKSLSEEEIRACFDYSYYTKN 432 (442)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHhcCHHhHhcCCHHHHHHHhCHHHHHhh
Confidence 46664 88999998764 45567 889 99988875 57899999999999999985
No 26
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=9.9e-73 Score=600.31 Aligned_cols=412 Identities=22% Similarity=0.269 Sum_probs=344.1
Q ss_pred ccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcc
Q 010908 47 ILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPL 125 (497)
Q Consensus 47 ~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~ 125 (497)
+..|.+.+||.+.++.+ |+ +++++++|++|+.|++.++.++| ||++++++|.+++++....... +
T Consensus 2 ~~~~~~~~y~~~~~~~i--~s--------~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~----~ 67 (451)
T PRK06390 2 VVSPIEYRYGRDQVKYI--FD--------DENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLER----V 67 (451)
T ss_pred CCCCcCcccCCHHHHHH--cC--------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHH----H
Confidence 45788999999999999 74 89999999999999999999999 9999999999998653111000 0
Q ss_pred cccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 126 VVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLH 205 (497)
Q Consensus 126 ~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~ 205 (497)
.......+.++ -.+++.+.+.+| +.|+| +| +|+||||+++|+++|++++.+ ..+.+.|..|+++|.
T Consensus 68 ~~~~~~~~~dv-----~~~~~~L~~~~g-~~~~~-iH------~G~SsnDi~~Ta~~L~lr~~l-~~l~~~l~~l~~~L~ 133 (451)
T PRK06390 68 REIESEIKHDV-----MALVEALSEQCS-AGKNY-VH------FGVTSNDINDTATALQIHDFV-SIIKDDIKNLMETLI 133 (451)
T ss_pred HHHHHHhCCCc-----HHHHHHHHHHhh-hhhhh-ee------cCccHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 00001112232 236777888887 67888 88 599999999999999997664 799999999999999
Q ss_pred HHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHH
Q 010908 206 SKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAE 285 (497)
Q Consensus 206 ~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~ 285 (497)
++|++|++|+||||||+|||||+||||||++|+++|.|+++||..++++++.+++|| |+||+...+.+ ...+.+++++
T Consensus 134 ~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~r~~~~~~~g-avGt~a~~g~~-~~~~~~~~a~ 211 (451)
T PRK06390 134 KLIDEYKDSPMMGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLG-PVGTGAALGKD-ALDIQNRVME 211 (451)
T ss_pred HHHHHhCCCchhhhhCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-hhcChhhCCCc-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 99998877654 5688899999
Q ss_pred HcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEE--c-CCCCCCCCCCCCCCChhH
Q 010908 286 ETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI--L-PENEPGSSIMPGKVNPTQ 362 (497)
Q Consensus 286 ~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~--l-p~~~~GSSiMP~K~NP~~ 362 (497)
.|||+.+.. .+++++||++++++++++.++++|+|||+||++|+|+ |+|||. + |+.++||||||||+||+.
T Consensus 212 ~LGl~~~~~---~~~~~~rD~~~e~~~~l~~la~~l~kia~Di~l~ss~---e~g~v~E~~~~~~~~GSSiMP~KrNPv~ 285 (451)
T PRK06390 212 ILGIYSEIG---STQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRP---EIDEVSEYFDEESQVGSSSMPSKVNPIN 285 (451)
T ss_pred HcCCCCCCC---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccchhhcccccCCCCCccCCCCCCCcHH
Confidence 999998533 3367999999999999999999999999999999976 577775 3 447999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhh-----
Q 010908 363 CEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE----- 437 (497)
Q Consensus 363 ~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~----- 437 (497)
+|.++++|..+.+... ..+.....+++++...+...|+.++.+..+.+.+......|++||+||++||++|++.
T Consensus 286 ~E~i~~~a~~~~~l~~-~~~~~~~~~~erd~~~~~~e~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~ 364 (451)
T PRK06390 286 SENVVSLSRFIRSLII-PEYEAGVTWHERDLTNSALERFTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESDDSIM 364 (451)
T ss_pred HHHHHHHHHHHHHhHH-HHHHhhhHhhccCCcchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHhccchhh
Confidence 9999999988777755 3333344446666556666677788887777777777789999999999999999998
Q ss_pred hHhHHHhhCcc-ccHHHHHHHH----HHHHHcCCCHHHHHHHcC---CCCHHHHhhccCcccccCC
Q 010908 438 SLMLVTSLNPK-IGYDNAAAVA----KKAHKEGTTLKDAALKLG---VLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 438 s~~l~t~La~~-ig~~~A~~ia----~~a~~~g~~l~e~~~~~~---~l~~~el~~~ldp~~~~g~ 495 (497)
+-.+++.|++. +||++||+++ +++.++|+++++++.+.+ .++++++++++||++|+|+
T Consensus 365 se~la~~L~~~G~~~~~Ah~~v~~~~~~a~~~g~~l~~~~~~~~~~~~l~~~~l~~~ldP~~~i~~ 430 (451)
T PRK06390 365 SESIVRALTLSGMPRQDAHEFVRRASMEARSNGKSLKSSLIEAGILKYIDEKTLDRAMDPANFIGQ 430 (451)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhhcCCHHHHHHhcCHHHHhhh
Confidence 33456678875 8999998654 557788999999988764 4899999999999999985
No 27
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=7.4e-72 Score=593.40 Aligned_cols=403 Identities=19% Similarity=0.265 Sum_probs=335.8
Q ss_pred ccChHhHHHhhcCccCCCCCCCCHHHHHHHHH---HH--HHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccc
Q 010908 54 LWGAQTQRSLQNFDIGGERERMPEPIVRAFGI---LK--KCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVV 127 (497)
Q Consensus 54 ~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~---v~--~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~ 127 (497)
+|+.+....+..|+ +...++.++. |+ .||+.++.+.| ||++++++|.++|+++.++.. .++...
T Consensus 7 r~~~~~~~~~~~~~--------~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~~~~~--~~~~~~ 76 (455)
T PRK04833 7 RFTQAADQRFKQFN--------DSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEALNELLEEVR--ANPQQI 76 (455)
T ss_pred ccCCcchHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhh--cCCccc
Confidence 56665334444474 3455666776 77 99999999999 999999999999999865421 222233
Q ss_pred cccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 128 WQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSK 207 (497)
Q Consensus 128 ~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~ 207 (497)
++.+. .++|++|++++.+++| +.|+| +| +|+||||+++|+++|++++.+ ..+.+.|..|+++|.++
T Consensus 77 ~~~~~-----edv~~~ie~~L~~~~g-~~g~~-lH------~grSrnD~~~Ta~rl~~r~~l-~~l~~~l~~l~~~L~~~ 142 (455)
T PRK04833 77 LASDA-----EDIHSWVEGKLIDKVG-DLGKK-LH------TGRSRNDQVATDLKLWCKDQV-AELLTALRQLQSALVET 142 (455)
T ss_pred CCCCC-----chHHHHHHHHHHHHhc-cccCc-cc------CCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33332 2388999999999998 67888 88 499999999999999998775 69999999999999999
Q ss_pred HHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHHH
Q 010908 208 SVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEE 286 (497)
Q Consensus 208 A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~ 286 (497)
|++|++++||||||+|||||+||||||++|+++|.|+++||..++++++.+||||+|+ ||++++++ +++|++
T Consensus 143 A~~~~~tvm~GrTH~Q~AqP~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGgaA~~GT~~~~dr-------~~~a~~ 215 (455)
T PRK04833 143 AENNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTAYEIDR-------EQLAGW 215 (455)
T ss_pred HHHcCCCEEeccccCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887 99999886 689999
Q ss_pred cCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHH
Q 010908 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEA 365 (497)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~ 365 (497)
|||+. +..|.+|++++||++++++++|+.++++|+|||+||++|+|+ |||++++|+. ++||||||||+||+.+|.
T Consensus 216 LGf~~-~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~---e~g~~el~~~~~~gSSiMPqKrNP~~~E~ 291 (455)
T PRK04833 216 LGFAS-ATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIFFNSG---EAGFVELSDRVTSGSSLMPQKKNPDALEL 291 (455)
T ss_pred hCCCC-CCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCceeeCCCCCCCcccCCCCCCChHHHH
Confidence 99999 588999999999999999999999999999999999999975 7998888875 899999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhcccc--cccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHH
Q 010908 366 LTMVCAQVIGNHVAITVGGSNG--HFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT 443 (497)
Q Consensus 366 i~~~a~~v~g~~~~~~~~~~~g--~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t 443 (497)
++++|+++.|+.+++.....+- .++++...+. ..+++++..+.+++..+ ..|+++|+||++||++++...+..++
T Consensus 292 ir~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~--~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~rm~~~~~~g~~~a~ 368 (455)
T PRK04833 292 IRGKCGRVQGALTGMLMTLKGLPLAYNKDMQEDK--EGLFDALDTWLDCLHMA-ALVLDGIQVKRPRCQEAAQQGYANAT 368 (455)
T ss_pred HHHHHHHHHhhHHHHHHHHhCChHHHhhhhhhhH--HHHHHHHHHHHHHHHHH-HHHHhhCeECHHHHHHHHHccHHHHH
Confidence 9999999999999887543322 2333222221 34677777777766655 68999999999999999998888777
Q ss_pred hhCc-----cccHHHHHHHHH----HHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccC
Q 010908 444 SLNP-----KIGYDNAAAVAK----KAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIG 494 (497)
Q Consensus 444 ~La~-----~ig~~~A~~ia~----~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g 494 (497)
+++. .+|+++||+++. .+.++|+++.++..+. ..+.++++.+++||+.++.
T Consensus 369 ~~a~~L~~~g~~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~v~ 432 (455)
T PRK04833 369 ELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFSSVIGDDVYPILSLQSCLD 432 (455)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHhcccchHHHHHhCCHHHHHH
Confidence 6543 489999997654 6778899988875542 3345777999999998874
No 28
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=9.2e-72 Score=588.15 Aligned_cols=399 Identities=19% Similarity=0.223 Sum_probs=333.7
Q ss_pred ccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCc
Q 010908 54 LWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGS 132 (497)
Q Consensus 54 ~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~ 132 (497)
+||.+.++.+ |+ +++++++|++||.|++.++.++| ||++.+++|.++++ + .+..+....
T Consensus 4 ~y~~~~~~~~--fs--------~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~-~---------d~~~i~~~~ 63 (431)
T PRK07380 4 RYTLPEMGNI--WT--------DTAKFQTWLDVEIAVCEAQAELGKIPQEAVEEIKAKAN-F---------DPQRILEIE 63 (431)
T ss_pred ccCcHHHHHH--cC--------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccC-C---------CHHHHHHHH
Confidence 8999999999 74 88999999999999999999999 99999999987652 1 111111000
Q ss_pred ccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 010908 133 GTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 212 (497)
Q Consensus 133 g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~ 212 (497)
. .++.++-.. -+.+.+.+| +.|+| || +|+||||++||+++|++++. +..+.+.|..++++|.++|++|+
T Consensus 64 ~-~~~h~v~a~-v~~l~~~~g-~~~~~-vH------~G~Ts~Di~dTa~~L~lr~~-l~~l~~~l~~l~~~L~~lA~~~~ 132 (431)
T PRK07380 64 A-EVRHDVIAF-LTNVNEYVG-DAGRY-IH------LGMTSSDVLDTGLALQLVAS-LDLLLEELEDLIQAIRYQAREHR 132 (431)
T ss_pred H-HhCCChHHH-HHHHHHHHH-Hhhcc-cc------CCCChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 011111111 234566777 67778 88 59999999999999999766 57999999999999999999999
Q ss_pred CcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCCC
Q 010908 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFV 292 (497)
Q Consensus 213 ~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~ 292 (497)
+|+|+||||+|||+|||||+||++|+++|.|+++||..++++++.+|||| |+||++++++ ++.+.+++.|||+.+
T Consensus 133 ~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~RL~~~~~~~~~~~l~G-AvGt~~~~~~----~~~~~~a~~LGl~~~ 207 (431)
T PRK07380 133 NTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERLVRLREDIAVGQISG-AVGTYANTDP----RVEAITCQKLGLKPD 207 (431)
T ss_pred CCeeechhcCccceechHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-hhcCcccCCh----hHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999976 8999888764 567789999999986
Q ss_pred CCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CCCCCCCCCCCCCChhHHHHHHHHH
Q 010908 293 TAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMVC 370 (497)
Q Consensus 293 ~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~~~GSSiMP~K~NP~~~E~i~~~a 370 (497)
+.+| ++.+||++++++++|+.++++|+|||+||++|+ ++|++|+.+| .+++|||+||||+||+.+|.++++|
T Consensus 208 ~~~~---~v~~rd~~~e~~~~la~~a~~L~kia~Di~~l~---~~~~~el~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a 281 (431)
T PRK07380 208 TAST---QVISRDRHAEYVQTLALVGASLERFATEIRNLQ---RTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLA 281 (431)
T ss_pred CCCC---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCceeecccCCCCCCCCcCCCCCCCCHHHHHHHHHH
Confidence 5543 468999999999999999999999999999999 5799999865 4689999999999999999999999
Q ss_pred HHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhh--hHhHH----Hh
Q 010908 371 AQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE--SLMLV----TS 444 (497)
Q Consensus 371 ~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~--s~~l~----t~ 444 (497)
+.+.|+..++.. ....++|++...+...|..++.+..+.+.+......+++||+||++||++|++. .+.++ ..
T Consensus 282 ~~~~g~~~~~~~-~~~~~~eRD~~~~~~e~~~l~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~ 360 (431)
T PRK07380 282 RVLRSYAVAALE-NVALWHERDISHSSVERVMLPDCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLA 360 (431)
T ss_pred HHHHHHHHHHHH-hchhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999876543 333566777666777788888888877777777779999999999999999973 33333 44
Q ss_pred hCcc-ccHHHHHHHH----HHHHH-cCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 445 LNPK-IGYDNAAAVA----KKAHK-EGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 445 La~~-ig~~~A~~ia----~~a~~-~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
|++. +|+++||+++ +++.+ +|.+|+|++.++ +.++++||++++||++|+|.
T Consensus 361 Lv~~gl~r~~Ah~~V~~~~~~a~~~~~~~l~e~l~~~~~~~~~l~~~~l~~~~dp~~ylg~ 421 (431)
T PRK07380 361 LVEKGMSREEAYRLVQKNAHTAWNTEGGNFRANLEADPEVTQLLSAAELADCFDPQLHLKN 421 (431)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHcChHhhhcCCHHHHHHhhCHHHHhcc
Confidence 6674 9999999765 46677 899999999986 47899999999999999995
No 29
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-71 Score=577.59 Aligned_cols=401 Identities=26% Similarity=0.343 Sum_probs=351.3
Q ss_pred cCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH-------HHHccccCCCC
Q 010908 52 DKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQ-------EVAEGKLNDHF 123 (497)
Q Consensus 52 ~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~-------ev~~~~~~~~f 123 (497)
+.+|+.++|+.+ |+ +++++++|++||.|++.|++++| ||++.++.|.+++. .|.+.......
T Consensus 2 ~~RY~~~em~~i--fS--------~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~eie~~t~H 71 (438)
T COG0015 2 DGRYSSPEMRAI--FS--------EEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKEIEAETGH 71 (438)
T ss_pred CcccCcHHHHHH--cC--------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCHHHHHHHHHHhCC
Confidence 468999999999 85 78999999999999999999999 99999999999863 23221111111
Q ss_pred cccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 124 PLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNS 203 (497)
Q Consensus 124 ~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~ 203 (497)
+ +-. +...+.+.+|++.++| || +|.|||||+||+..|.+++ +.+.|.+.|..+++.
T Consensus 72 d---------------V~a-~v~~l~e~~~~~~~~~-VH------~GaTS~DI~Dta~~L~lk~-a~~ii~~~l~~l~~~ 127 (438)
T COG0015 72 D---------------VKA-LVRALAEKVGEEASEY-VH------FGATSQDIIDTALALQLKE-ALDLILPDLKRLIEA 127 (438)
T ss_pred C---------------cHH-HHHHHHHhcCcccccc-ee------cccchHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 1 111 2345677788656666 77 6999999999999988854 568999999999999
Q ss_pred HHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHH
Q 010908 204 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAV 283 (497)
Q Consensus 204 L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~l 283 (497)
|.++|.+|++++|+||||+|||+|||||++|+.|+++|.|+++||.++.+++..+.+|| |+||..+.+ +.+..+++.+
T Consensus 128 L~~~A~~~k~t~m~GRTHgq~A~PtT~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~G-a~Gt~Aa~~-~~~~~ve~~v 205 (438)
T COG0015 128 LAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGG-AVGTLAALG-DLGAEVEERV 205 (438)
T ss_pred HHHHHHHhCCCeecccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-chhhHhhcC-chhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 999977655 4457899999
Q ss_pred HHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CCCCCCCCCCCCCChh
Q 010908 284 AEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPT 361 (497)
Q Consensus 284 a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~~~GSSiMP~K~NP~ 361 (497)
++.|||...+.++ |+.+||+++++.++|+.++++|.|||.|||+|+ |+|++||.+| ++|+|||+|||||||+
T Consensus 206 ~e~LGL~~~p~st---q~~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~---~~e~~Ev~E~f~~gq~GSSaMPHKrNPi 279 (438)
T COG0015 206 AEKLGLKPAPIST---QVSPRDRIAEFFSALALLAGSLEKFARDIRLLQ---RTEVGEVEEPFAKGQVGSSAMPHKRNPI 279 (438)
T ss_pred HHHcCCCCCCCCc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccccccccccCCCCCCCCCCCcccCcH
Confidence 9999999877776 689999999999999999999999999999999 6899999998 4699999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhH
Q 010908 362 QCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLML 441 (497)
Q Consensus 362 ~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l 441 (497)
.||.++++++.+.++........ ..|+|++...+.+.|..||..+.+.+.++....+++++|+||+++|++||+..+++
T Consensus 280 ~~E~~~glar~~r~~~~~~~e~~-~~whERdlt~ssver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~gl 358 (438)
T COG0015 280 DSENVTGLARVARALVSTLLENL-VLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGL 358 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHhhccch
Confidence 99999999999999987776655 77999999999999999999999999999988899999999999999999988875
Q ss_pred H------HhhCc-cccHHHHHHHHH----HHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 442 V------TSLNP-KIGYDNAAAVAK----KAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 442 ~------t~La~-~ig~~~A~~ia~----~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
+ .+|.+ .+||++||++++ .+.+++++|.+.++++ +++++++++++|||.+|+|.
T Consensus 359 i~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~dp~~y~G~ 427 (438)
T COG0015 359 IASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEELLELLDPANYLGR 427 (438)
T ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchHHHhccchhhhccCcHHHHHHcCCHHHHhhH
Confidence 3 34666 689999998775 4668889998877765 58999999999999999985
No 30
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.1e-71 Score=597.27 Aligned_cols=393 Identities=16% Similarity=0.178 Sum_probs=328.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 010908 75 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 153 (497)
Q Consensus 75 ~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg 153 (497)
.++.+++.|+++++||+.++.+.| ||++++++|.++++++.+ ...+.|..+ ..++ +++..|+.++.+..|
T Consensus 33 ~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~~~~~-~~~~~l~~~----~~~e----dv~~~ie~~l~~~~G 103 (502)
T PRK06705 33 QRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVEE-IPEEQLLYT----EQHE----DLFFLVEHLISQEAK 103 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-cccCccccC----CCCC----chHHHHHHHHHHhcC
Confidence 478999999999999999999999 999999999999987732 122344422 2334 455667888888887
Q ss_pred ccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhh
Q 010908 154 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQE 233 (497)
Q Consensus 154 ~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~ 233 (497)
++.|+| +|+ |+||||+++|+++|++++.+ ..+.+.|..|+++|.++|++|++|+||||||+|+|||+|||||
T Consensus 104 ~~~g~~-lH~------GrSrnD~v~Ta~~L~lr~~l-~~l~~~l~~l~~~l~~~A~~~~~t~m~g~TH~Q~AqP~T~G~~ 175 (502)
T PRK06705 104 SDFVSN-MHI------GRSRNDMGVTMYRMSLRRYV-LRLMEHHLLLQESILQLAADHKETIMPAYTHTQPAQPTTFGHY 175 (502)
T ss_pred chhhcc-ccC------CCCHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccceehHHHHH
Confidence 567888 995 99999999999999998775 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHH
Q 010908 234 FSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 313 (497)
Q Consensus 234 ~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~ 313 (497)
|++|+++|.|+++||..++++++.+||||+ +|+|.+.+ ...+++|++|||+. +..|++|++++||++++++++
T Consensus 176 l~~~~~~l~r~~~rL~~~~~r~~~~plGga-ag~gt~~~-----~~r~~~a~~LGf~~-~~~ns~~a~~~rD~~~e~~~~ 248 (502)
T PRK06705 176 TLAIYDTMQRDLERMKKTYKLLNQSPMGAA-ALSTTSFP-----IKRERVADLLGFTN-VIENSYDAVAGADYLLEVSSL 248 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCCchhh-hhccCCch-----HHHHHHHHHcCCCC-CcCCHHHHHhccHHHHHHHHH
Confidence 999999999999999999999999999995 45444322 34589999999998 577999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhccccccccc
Q 010908 314 LNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 392 (497)
Q Consensus 314 l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~ 392 (497)
+++++++|+|||+||++|+|+ |||+|.+|+. .+||||||||+||+.+|.|+++|+++.|+..++.... .++++..
T Consensus 249 la~~~~~L~Ria~Dl~~~ss~---e~g~iel~e~~~~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~l~~~-~~~~~~~ 324 (502)
T PRK06705 249 LMVMMTNTSRWIHDFLLLATK---EYDGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMI-HNTPFGD 324 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCC---CCCeeeecCCCCCccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchh
Confidence 999999999999999999975 7998888876 7999999999999999999999999999988886543 3333321
Q ss_pred c--hhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHHhh----Ccc--ccHHHHHHHH----HH
Q 010908 393 V--FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSL----NPK--IGYDNAAAVA----KK 460 (497)
Q Consensus 393 ~--~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~L----a~~--ig~~~A~~ia----~~ 460 (497)
. .++.+...++..+....+++..+ ..++++|+||++||++++..++.++|+| +++ +||++||+++ +.
T Consensus 325 ~~d~q~~~~~~~~~~~~~~~~~l~~~-~~~l~~l~v~~~rm~~~~~~g~~~At~la~~Lv~~~Gl~fr~Ah~iV~~~v~~ 403 (502)
T PRK06705 325 IVDTEDDLQPYLYKGIEKAIRVFCIM-NAVIRTMKVEEDTLKRRSYKHAITITDFADVLTKNYGIPFRHAHHAASVIANM 403 (502)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHHHH-HHHHCcCEECHHHHHHHHhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 22222334566666666667777 4799999999999999999888777654 443 8999999755 45
Q ss_pred HHHcCCCHHHHHHHc----------CCCCHHHHhhccCcccccCCC
Q 010908 461 AHKEGTTLKDAALKL----------GVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 461 a~~~g~~l~e~~~~~----------~~l~~~el~~~ldp~~~~g~~ 496 (497)
+.++|++|.+++.++ ..++++++++++||+++++.+
T Consensus 404 a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r 449 (502)
T PRK06705 404 SLEQKKELHELCFKDVNIYLQEKFKIQLLEKEWEEIISPEAFIQKR 449 (502)
T ss_pred HHHhCCCHHHhhHHHHHhhhhhhhhhcCCHHHHHHHCCHHHHHhhc
Confidence 778899998876642 347788999999999999853
No 31
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=1e-70 Score=582.19 Aligned_cols=406 Identities=17% Similarity=0.170 Sum_probs=343.9
Q ss_pred cCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHccccCCCCcccccc
Q 010908 52 DKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG--LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQ 129 (497)
Q Consensus 52 ~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G--i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q 129 (497)
|-+|+.+.++.+ |+ +++++++|++++.|++.+++++| ||++.++.|.+++.++ .+..+.
T Consensus 2 ~~ry~~~~~~~~--fs--------~~~~~~~~l~~e~ala~a~~~~g~~ip~~~a~~i~~~~~~~---------d~~~i~ 62 (436)
T cd03302 2 ASRYASKEMVYI--FS--------PRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENI---------DFEIAA 62 (436)
T ss_pred CCCcCCHHHHHH--cC--------hHHHHHHHHHHHHHHHHhhHHhCCCCCHHHHHHHHHhhhcC---------CHHHHH
Confidence 468999999999 74 78999999999999999999999 8999999998887211 111111
Q ss_pred cCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 130 TGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209 (497)
Q Consensus 130 ~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~ 209 (497)
... ..++.++..++ ..+.+.+| +.|+| ||+ |+||||+++|++.|++++. +..+.+.|..|+++|.++|+
T Consensus 63 ~~e-~~~~hdv~a~~-~~l~~~~~-~~~~~-vH~------G~TS~Di~dta~~L~lr~a-~~~l~~~L~~l~~~L~~~A~ 131 (436)
T cd03302 63 AEE-KKLRHDVMAHV-HAFGLLCP-AAAGI-IHL------GATSCFVTDNTDLIQIRDA-LDLILPKLAAVIDRLAEFAL 131 (436)
T ss_pred HHH-HHhCcCchHHH-HHHHHHhH-hccCe-eee------CcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 000 01122222222 34677777 67788 884 9999999999999988665 58999999999999999999
Q ss_pred HccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCC---CCC---chHHHHHHH
Q 010908 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT---KKG---FDVKIASAV 283 (497)
Q Consensus 210 ~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~---~~~---~~~~v~~~l 283 (497)
+|++|+||||||+|||+||||||||++|+++|.|+++||..++++++.+++|| |+||+... .++ .+..+.+++
T Consensus 132 ~~~dt~m~GrTH~Q~A~P~TfG~~~a~~~~~L~r~~~RL~~~~~~~~~~~~~G-avGt~a~~~~~~~~dr~~~~~v~~~~ 210 (436)
T cd03302 132 EYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDLRFRGVKG-TTGTQASFLDLFEGDHDKVEALDELV 210 (436)
T ss_pred HhCCCeeeccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC-hhhhhHHHHhcCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 79996322 222 247888999
Q ss_pred HHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CCCCCCCCCCCCCChh
Q 010908 284 AEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPT 361 (497)
Q Consensus 284 a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~~~GSSiMP~K~NP~ 361 (497)
++.|||..+ .++ ..++++||++++++++|+.++++|+|||+||++|+| +|||.+| .+++||||||||+||+
T Consensus 211 a~~LGl~~~-~~~-~~~v~~rD~~~e~~~~la~~a~~L~riA~Dl~l~~s-----~~el~e~~~~g~~GSS~MPhKrNPv 283 (436)
T cd03302 211 TKKAGFKKV-YPV-TGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLAN-----LKEVEEPFEKGQIGSSAMPYKRNPM 283 (436)
T ss_pred HHHcCCCCC-CCc-hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CceecccccCCCCCcccCCCccCcH
Confidence 999999984 233 335799999999999999999999999999999995 8999998 4589999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHh-
Q 010908 362 QCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLM- 440 (497)
Q Consensus 362 ~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~- 440 (497)
.+|.++++|+++.|+..++......+++|++...|...|+.++++..+.+++..+...|++||+||++||++|++.+.+
T Consensus 284 ~~E~i~~~a~~~~g~~~~~~~~~~~~~~Erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~g~ 363 (436)
T cd03302 284 RSERCCSLARHLMNLASNAAQTASTQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPF 363 (436)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCh
Confidence 9999999999999999998877888899999999999999999999999999999999999999999999999998743
Q ss_pred -H----HHhhCcc-ccHHHHHHHHH----HHHHc------CCCHHHHHHHcCCC--CHHHHhhccCcccccCC
Q 010908 441 -L----VTSLNPK-IGYDNAAAVAK----KAHKE------GTTLKDAALKLGVL--NSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 441 -l----~t~La~~-ig~~~A~~ia~----~a~~~------g~~l~e~~~~~~~l--~~~el~~~ldp~~~~g~ 495 (497)
. +..|++. +||++||+++. ++.++ |.+|+|++.++..+ ++++|++++||+.|+|.
T Consensus 364 ~~se~~~~~L~~~g~~~~~Ah~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~dp~~~~g~ 436 (436)
T cd03302 364 MATENIIMAAVKAGGDRQDAHERIRVLSHQAAAVVKQEGGDNDLIERIKNDAYFKPIWDELDALLDPKTFIGR 436 (436)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHhcCCCcCCCHHHHHHHhCHHhhhCc
Confidence 2 2346764 89999997665 55677 99999999986321 78889999999999983
No 32
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=2.1e-70 Score=572.15 Aligned_cols=358 Identities=25% Similarity=0.297 Sum_probs=315.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 010908 76 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154 (497)
Q Consensus 76 ~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~ 154 (497)
++++++++++|+.|++.++.+.| ||++++++|.++++.+..+. ..-+.... ..+ ..+ ..+++.+.+.+|+
T Consensus 7 ~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~-~~~~~~~~---~~~----~~v-~~~e~~L~~~~g~ 77 (381)
T cd01595 7 EENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDA-ERIAEIEK---ETG----HDV-IAFVYALAEKCGE 77 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCH-HHHHHHHH---HhC----cCc-HHHHHHHHHHhhh
Confidence 78999999999999999999999 99999999999998752110 00001110 011 223 4478888999985
Q ss_pred cCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhH
Q 010908 155 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEF 234 (497)
Q Consensus 155 ~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~ 234 (497)
+.|+| +| +|+||||+++|+++|++++.+ ..+.+.|..|+++|.++|++|+|++||||||+||||||||||||
T Consensus 78 ~~~~~-vH------~g~S~nDi~~Ta~~l~lr~~l-~~l~~~l~~l~~~L~~~A~~~~dt~m~grTH~Q~A~P~T~G~~~ 149 (381)
T cd01595 78 DAGEY-VH------FGATSQDINDTALALQLRDAL-DIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKF 149 (381)
T ss_pred HhhhH-ee------cCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCChHHhhcCCCCCcchhHHHHH
Confidence 57888 88 599999999999999998765 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCCCCCCChhhHhh-cchHHHHHHHH
Q 010908 235 SGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA-AHDAFVETSGA 313 (497)
Q Consensus 235 a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~-~rD~~~e~~~~ 313 (497)
++|+++|.|+++||.+++++++.+|||| |+|||.+.++ ++..+.+++|+.|||..+ .++|+. +||+++|++++
T Consensus 150 ~~~~~~L~r~~~rL~~~~~~~~~~~lGg-a~G~g~~~~~-~~~~~~~~~a~~LGl~~~----~~~~~~~~rd~~~e~~~~ 223 (381)
T cd01595 150 AVWAAELLRHLERLEEARERVLVGGISG-AVGTHASLGP-KGPEVEERVAEKLGLKVP----PITTQIEPRDRIAELLSA 223 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhccc-HhhhHhhcCC-cHHHHHHHHHHHcCCCCC----CCCCCcccchHHHHHHHH
Confidence 9999999999999999999999999998 8899887765 778899999999999653 344544 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccc
Q 010908 314 LNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391 (497)
Q Consensus 314 l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~ 391 (497)
++.++.+|+|||+||++|+| +|||||.+|. +++||||||||+||+.+|.++++|+++.|+..++.... .+++|+
T Consensus 224 l~~~~~~l~ria~Dl~~~~s---~e~gev~~~~~~~~~GSS~MPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~er 299 (381)
T cd01595 224 LALIAGTLEKIATDIRLLQR---TEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENL-VQWHER 299 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccccceeccccCCCCCCccCCCcCCcHHHHHHHHHHHHHHHHHHHHHHhh-hHhhcc
Confidence 99999999999999999996 5999999996 38999999999999999999999999999998887755 778999
Q ss_pred cchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHh------HHHhhCcc-ccHHHHHHHHHH
Q 010908 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLM------LVTSLNPK-IGYDNAAAVAKK 460 (497)
Q Consensus 392 ~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~------l~t~La~~-ig~~~A~~ia~~ 460 (497)
+...|.+.|+.++++..+..++..+...|++||+||++||+++++.+++ +++.|+++ +||++||+++++
T Consensus 300 d~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~~g~g~~~Ah~~v~~ 375 (381)
T cd01595 300 DLSDSSVERNILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKE 375 (381)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCHHHHHHHHHHHHHhCCCHhHHHHHHHH
Confidence 9999999999999999999999999899999999999999999998773 35667886 999999999976
No 33
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=100.00 E-value=9.8e-69 Score=550.25 Aligned_cols=335 Identities=24% Similarity=0.262 Sum_probs=298.9
Q ss_pred cCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccccc
Q 010908 52 DKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQT 130 (497)
Q Consensus 52 ~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~ 130 (497)
+.+||.+.++++ |+ ++++|++|+.||+|+|.+|.++| ||++++++|.++|+++. .+..+.
T Consensus 3 ~~~~~~~~~~~i--~s--------d~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~~---------~d~~~~ 63 (338)
T TIGR02426 3 DGLFGDPAALEL--FS--------DRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAACAAAA---------PDLEAL 63 (338)
T ss_pred ccccCCHHHHHH--cC--------CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccCC---------CCHHHH
Confidence 358999999999 74 89999999999999999999999 99999999999998752 333444
Q ss_pred CcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 131 GSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210 (497)
Q Consensus 131 g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~ 210 (497)
+.++..+++..-.++..+.+.+|++.|+| || +|+||||+++|+++|++++.+ ..+.+.|..|+++|.++|++
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~~~g~~~g~~-vH------~G~S~nD~~~Ta~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~ 135 (338)
T TIGR02426 64 AHAAATAGNPVIPLVKALRKAVAGEAARY-VH------RGATSQDVIDTSLMLQLRDAL-DLLLADLGRLADALADLAAR 135 (338)
T ss_pred HhHHHhcCCcHHHHHHHHHHHhCccccCc-cc------CCCChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45565566553345667778998777877 88 599999999999999997664 79999999999999999999
Q ss_pred ccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCC
Q 010908 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP 290 (497)
Q Consensus 211 ~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~ 290 (497)
|+|++||||||+|||||+||||||++|+++|.|+++||..++++++.+|||| |+|||.+. ++|+..+.+++++.|||+
T Consensus 136 ~~~~~m~grTH~Q~A~P~T~G~~l~~~~~~l~r~~~rL~~~~~~~~~~~lGg-avGtg~~~-~~~~~~v~~~~a~~LGl~ 213 (338)
T TIGR02426 136 HRDTPMTGRTLLQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGG-AAGTLAAL-GTRGGAVAAALAARLGLP 213 (338)
T ss_pred hCCCceecccCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCcc-hhccCCCc-cchHHHHHHHHHHHhCcC
Confidence 9999999999999999999999999999999999999999999999999999 89998664 467788999999999999
Q ss_pred CCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCCCCCChhHHHHHHHHH
Q 010908 291 FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVC 370 (497)
Q Consensus 291 ~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP~K~NP~~~E~i~~~a 370 (497)
.+..+ |+++||++++++++++.++++|+|||+||++|++ +||||+.++ .++||||||||+||+.+|.++++|
T Consensus 214 ~~~~~----~~~~rd~~~e~~~~l~~la~~l~ria~Dl~l~s~---~e~gei~~~-~~~GSSiMPqK~NP~~~E~i~~~a 285 (338)
T TIGR02426 214 LPALP----WHTQRDRIAEFGSALALVAGALGKIAGDIALLSQ---TEVGEVFEA-GGGGSSAMPHKRNPVGAALLAAAA 285 (338)
T ss_pred CCCCc----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCChhhhC-CCCCcccCCCCCCcHHHHHHHHHH
Confidence 85433 5799999999999999999999999999999994 699999984 479999999999999999999999
Q ss_pred HHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 010908 371 AQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGI 424 (497)
Q Consensus 371 ~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl 424 (497)
+++.|+..++. ..+..++|++...|...|.++|+++.+.++++..+..+++||
T Consensus 286 ~~~~g~~~~~~-~~~~~~~Er~~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~l 338 (338)
T TIGR02426 286 RRVPGLAATLH-AALPQEHERSLGGWHAEWETLPELVRLTGGALRQAQVLAEGL 338 (338)
T ss_pred HHHHHHHHHHH-HhchHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999988775 457789999999999999999999999999999998888875
No 34
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=2.2e-68 Score=587.46 Aligned_cols=399 Identities=19% Similarity=0.262 Sum_probs=329.7
Q ss_pred HhHHHhhcCccCCCCCCCCHHHHHHHHHHH-----HHHHHHHHHcC-CCHHHHHHHHHHHHHHHccc-cCCCCccccccc
Q 010908 58 QTQRSLQNFDIGGERERMPEPIVRAFGILK-----KCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGK-LNDHFPLVVWQT 130 (497)
Q Consensus 58 ~~~rai~~F~~s~~~~~~~~~~i~a~~~v~-----~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~-~~~~f~~~~~q~ 130 (497)
+....+..|+ +...++.++.++ .|++.++.+.| ||++++++|.++++++.... .+..+..+.
T Consensus 11 ~~~~~~~~~~--------~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~~~~~~~~~--- 79 (614)
T PRK12308 11 AADTRFKQFN--------DSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLS--- 79 (614)
T ss_pred cccHHHHHHh--------cCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCC---
Confidence 4455565564 457788888899 99999999999 99999999999998875321 111222221
Q ss_pred CcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 131 GSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210 (497)
Q Consensus 131 g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~ 210 (497)
...++|.+|++.+.+.+| +.|+| +|+ |+||||+++|+++|++++.+ ..|.+.|..|+++|.++|++
T Consensus 80 -----~~ed~h~~ie~~L~~~~g-~~~~~-iH~------g~S~nD~~~Ta~~L~~r~~~-~~l~~~l~~l~~~l~~~a~~ 145 (614)
T PRK12308 80 -----DAEDIHSWVEQQLIGKVG-DLGKK-LHT------GRSRNDQVATDLKLWCRQQG-QQLLLALDQLQQQMVNVAER 145 (614)
T ss_pred -----ccccHHHHHHHHHHHHhc-ccccc-eec------CCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 134578889999999998 78888 894 99999999999999997664 79999999999999999999
Q ss_pred ccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHHHcCC
Q 010908 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSL 289 (497)
Q Consensus 211 ~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~LGl 289 (497)
|++|+||||||+|||||+||||||++|+++|.|+++||..++++++.+||||||+ ||+++.++ +++|+.|||
T Consensus 146 ~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~plGgga~agt~~~~~r-------~~~a~~LG~ 218 (614)
T PRK12308 146 HQGTVLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPIDR-------EALAHNLGF 218 (614)
T ss_pred cCCCEeecCcCCcccEEecHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhccccCCCCCCCH-------HHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999998 99877665 579999999
Q ss_pred CCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHHHHH
Q 010908 290 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTM 368 (497)
Q Consensus 290 ~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~i~~ 368 (497)
.. +..|.+||+++||++++++++|+.++.+|+|||+||++|+|+ |||++++|+. ++||||||||+||+.+|.+++
T Consensus 219 ~~-~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~ss~---e~g~~el~~~~~~gSSiMPqK~NP~~~E~i~~ 294 (614)
T PRK12308 219 RR-ATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSG---ESGFIELADTVTSGSSLMPQKKNPDALELIRG 294 (614)
T ss_pred CC-CcCCHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcCCEEeCccCCCccccCcCccCCcHHHHHHH
Confidence 87 678999999999999999999999999999999999999974 7998888765 799999999999999999999
Q ss_pred HHHHhhhhhhHHHhhcccc--cccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHHhhC
Q 010908 369 VCAQVIGNHVAITVGGSNG--HFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLN 446 (497)
Q Consensus 369 ~a~~v~g~~~~~~~~~~~g--~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La 446 (497)
+|+++.|+..++.....+. .++++...+ -..+++++..+..++. +...|++||+||++||++|+...+.+++.++
T Consensus 295 ~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~--~~~l~~~~~~~~~~l~-~~~~~l~~l~v~~~rm~~~~~~g~~~a~~la 371 (614)
T PRK12308 295 KTGRVYGALAGMMMTVKALPLAYNKDMQED--KEGLFDALDTWNDCME-MAALCFDGIKVNGERTLEAAKQGYANATELA 371 (614)
T ss_pred HHHHHhhHHHHHHHHHcCCchhhccchhhh--HHHHHHHHHHHHHHHH-HHHHHhCcCEECHHHHHHHHHcCHHHHHHHH
Confidence 9999999998887543322 344333222 1235666666666666 4468999999999999999988888777654
Q ss_pred ----c-cccHHHHHHHHH----HHHHcCCCHHHHHHHc-----CCCCH-----HHHhhccCcccccCC
Q 010908 447 ----P-KIGYDNAAAVAK----KAHKEGTTLKDAALKL-----GVLNS-----EEFDNLVVPEKMIGP 495 (497)
Q Consensus 447 ----~-~ig~~~A~~ia~----~a~~~g~~l~e~~~~~-----~~l~~-----~el~~~ldp~~~~g~ 495 (497)
. .+|+++||+++. .+.++|++|.+++.++ ..+++ .+++..++|..++|.
T Consensus 372 ~~L~~~g~~~r~Ah~~v~~~v~~a~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 439 (614)
T PRK12308 372 DYLVAKGIPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDVIEDDVYQILTIESCLEKRCALGG 439 (614)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHhhhhhhHHHHHhCCHHHHHHhccCCCC
Confidence 3 489999997654 5788899999886654 34554 345667777777774
No 35
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=5.6e-68 Score=554.13 Aligned_cols=364 Identities=21% Similarity=0.266 Sum_probs=304.0
Q ss_pred ccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCc
Q 010908 54 LWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGS 132 (497)
Q Consensus 54 ~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~ 132 (497)
+||...++++ |+ +++++++|++|+.|++.++.+.| ||++++++|.++++.+.+.. ..+. . ..
T Consensus 1 ~~~~~~~~~~--fs--------~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~--~~~~--~---~~ 63 (387)
T cd01360 1 RYGRPEMKKI--WS--------EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERV--KEIE--A---ET 63 (387)
T ss_pred CCCchHHHHH--hC--------HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHH--HHHH--H---Hh
Confidence 5899999999 74 78999999999999999999999 99999999999986432110 0000 0 11
Q ss_pred ccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 010908 133 GTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 212 (497)
Q Consensus 133 g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~ 212 (497)
+.++ + .++..+.+.+| +.|+| +| +|+||||+++|+++|++++. +..+.+.|..++++|.++|++|+
T Consensus 64 ~~dv-~----~~e~~L~~~~g-~~~~~-lH------~G~S~nDi~~ta~~L~lr~~-l~~l~~~l~~l~~~L~~~A~~~~ 129 (387)
T cd01360 64 KHDV-I----AFVTAIAEYCG-EAGRY-IH------FGLTSSDVVDTALALQLREA-LDIILKDLKELLEVLKKKALEHK 129 (387)
T ss_pred CCCh-H----HHHHHHHHHHH-Hhhhh-ee------CCCChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 1111 2 25667788888 56777 88 59999999999999999766 47999999999999999999999
Q ss_pred CcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCCC
Q 010908 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFV 292 (497)
Q Consensus 213 ~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~ 292 (497)
+++||||||+|||||+||||||++|+++|.|+++||.+++++++.+|||| |+|||.+.+ ..+.++++++|||+.+
T Consensus 130 ~t~m~grTH~Q~A~P~TfG~~l~~~~~~L~r~~~rL~~~~~~~~~~~lgg-a~Gt~~~~~----~~~~~~~a~~LG~~~~ 204 (387)
T cd01360 130 DTVMVGRTHGIHAEPTTFGLKFALWYAEFKRHLERLKEARERILVGKISG-AVGTYANLG----PEVEERVAEKLGLKPE 204 (387)
T ss_pred CCeeehhhcCCcceeehHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccch-HhhcCccCC----HHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999998 889987654 4567899999999986
Q ss_pred CCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHHHHHHHH
Q 010908 293 TAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVC 370 (497)
Q Consensus 293 ~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~~~a 370 (497)
+..| ++++||+++|++++++.++++|+|||+||++|++ +|||||.+|. +++||||||||+||+.+|.++++|
T Consensus 205 ~~~~---~~~~rD~~~e~~~~la~~~~~L~ria~Dl~~~s~---~e~gel~e~~~~~~~GSS~MPqKrNP~~~E~i~~~a 278 (387)
T cd01360 205 PIST---QVIQRDRHAEYLSTLALIASTLEKIATEIRHLQR---TEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLA 278 (387)
T ss_pred CCCC---cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccceecCCCCCCCCcCCCCCCCCCHHHHHHHHHH
Confidence 5544 4799999999999999999999999999999995 5899999884 579999999999999999999999
Q ss_pred HHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhh--hHhHHH----h
Q 010908 371 AQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE--SLMLVT----S 444 (497)
Q Consensus 371 ~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~--s~~l~t----~ 444 (497)
+.+.|+..++..+. ..+++++...+...|+.++.+......+......++++|+||++||++++.. .+.+++ .
T Consensus 279 ~~~~g~~~~~~~~~-~~~~~rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~ 357 (387)
T cd01360 279 RVIRSNVIPALENV-ALWHERDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLA 357 (387)
T ss_pred HHHHHHHHHHHhhh-HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999986554322 3345565555556677777776766666666679999999999999999986 444444 4
Q ss_pred hCcc-ccHHHHHHHHHH
Q 010908 445 LNPK-IGYDNAAAVAKK 460 (497)
Q Consensus 445 La~~-ig~~~A~~ia~~ 460 (497)
|++. +||++||+++.+
T Consensus 358 L~~~g~~~r~Ah~~V~~ 374 (387)
T cd01360 358 LVEKGMSREEAYEIVQR 374 (387)
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 5554 899999999876
No 36
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=7.2e-67 Score=597.13 Aligned_cols=391 Identities=18% Similarity=0.204 Sum_probs=331.6
Q ss_pred cCccCh-HhHHHhhcCccCCC-CCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccc
Q 010908 52 DKLWGA-QTQRSLQNFDIGGE-RERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVW 128 (497)
Q Consensus 52 ~~~~g~-~~~rai~~F~~s~~-~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~ 128 (497)
..+|+. ++++++ | +++ ....+++.++.|++++.||+.++.+.| ||++++++|.+++.++.+... ..|..++
T Consensus 412 ~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~l~~~~~~~~-~~~~~~~- 485 (887)
T PRK02186 412 AARPGLPPEAQAI--V--YGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDAGF-APLLARP- 485 (887)
T ss_pred ccccCCChhhhce--e--cCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhHH-hhCcCCC-
Confidence 356654 777888 4 233 234578999999999999999999999 999999999999987753221 2343332
Q ss_pred ccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 129 QTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKS 208 (497)
Q Consensus 129 q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A 208 (497)
..++.+++ +++.+.+.+|++.|+| +|+ |+||||+++|+++|++++.+ ..+.+.|..|+++|.++|
T Consensus 486 ---~~~~~~~~----~e~~L~~~~g~~~~~~-lH~------grSrnD~v~T~~~l~lr~~~-~~l~~~l~~l~~~L~~~A 550 (887)
T PRK02186 486 ---APRGLYML----YEAYLIERLGEDVGGV-LQT------ARSRNDINATTTKLHLREAT-SRAFDALWRLRRALVFKA 550 (887)
T ss_pred ---CCcchHHH----HHHHHHHHhChhhhcc-cCc------cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 22344554 7889999999667888 895 99999999999999998765 799999999999999999
Q ss_pred HHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHHHc
Q 010908 209 VEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEET 287 (497)
Q Consensus 209 ~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~L 287 (497)
++|++|+||||||+|||||+||||||++|+++|.|+++||.+++++++.+||||+|. ||+++.++ +++|++|
T Consensus 551 ~~~~~~~m~g~TH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~r~~~~plG~aag~gt~~~~~~-------~~~a~~L 623 (887)
T PRK02186 551 SANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGGTTFPIDP-------EFVARLL 623 (887)
T ss_pred HHcCCCEeecCccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcccccccCCCCCCCH-------HHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999664 77776665 5799999
Q ss_pred CCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHHH
Q 010908 288 SLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEAL 366 (497)
Q Consensus 288 Gl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~i 366 (497)
||+. +..|.+||+++||+++|++++++.++.+|+|||+||++|+| +|||||.+|+. ++|||||||||||+.+|++
T Consensus 624 Gf~~-~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~---~e~g~i~~~~~~~~gSSiMPqKrNP~~~E~i 699 (887)
T PRK02186 624 GFEQ-PAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTT---REFALVSLPDALTGGSSMLPQKKNPFLLEFV 699 (887)
T ss_pred CCCC-CccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCcEECCCccccccCCCCCCCCCcHHHHH
Confidence 9997 78899999999999999999999999999999999999996 58999999986 7999999999999999999
Q ss_pred HHHHHHhhhhhhHHHhhcccccccccchhhhhH-HhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHHhh
Q 010908 367 TMVCAQVIGNHVAITVGGSNGHFELNVFKPMIA-SGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSL 445 (497)
Q Consensus 367 ~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~-~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~L 445 (497)
+++|+++.|+..+++....+.+++++...+... ..+++++..+..++..+. .++++|+||++||++++..+++++|+|
T Consensus 700 r~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~rm~~~~~~~~~~at~l 778 (887)
T PRK02186 700 KGRAGVVAGALASASAALGKTPFSNSFEAGSPMNGPIAQACAAIEDAAAVLV-LLIDGLEADQARMRAHLEDGGVSATAV 778 (887)
T ss_pred HHHHHHHhhHHHHHHHHHccCCcccccchhhhhHHHHHHHHHHHHHHHHHHH-HHHhhCEECHHHHHHHHhcCcchHHHH
Confidence 999999999999988777777887554333322 346777778888888775 899999999999999999988887765
Q ss_pred C----c--cccHHHHHHHH----HHHHHcCCCHHHHHHHc
Q 010908 446 N----P--KIGYDNAAAVA----KKAHKEGTTLKDAALKL 475 (497)
Q Consensus 446 a----~--~ig~~~A~~ia----~~a~~~g~~l~e~~~~~ 475 (497)
+ . .+||++||+++ +.+.++|.++.+.+.+.
T Consensus 779 a~~L~~~~g~~fr~Ah~~v~~~v~~~~~~~~~~~~~~~~~ 818 (887)
T PRK02186 779 AESLVVRRSISFRSAHTQVGQAIRQSLDQGRSSADALAAL 818 (887)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCcccchHHHh
Confidence 4 4 48999999765 45677888887776653
No 37
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-67 Score=513.76 Aligned_cols=405 Identities=22% Similarity=0.258 Sum_probs=353.9
Q ss_pred cCccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccc
Q 010908 52 DKLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLV 126 (497)
Q Consensus 52 ~~~~g~----~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~ 126 (497)
.++||+ .+...++.|+.|.+ .+..++++=++-.+|+|.++.+.| |+.++...|.+.+++|..++..+.|.+.
T Consensus 6 ~KlWGGRFtg~~dp~m~~fn~Si~---ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~ 82 (464)
T KOG1316|consen 6 QKLWGGRFTGAVDPLMEKFNASIP---YDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLN 82 (464)
T ss_pred hhhhccccCCCCCHHHHHhhccCc---cchHHHHhhhhhhHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCceEeC
Confidence 478986 67788999998876 355566665666899999999999 9999999999999999998888999887
Q ss_pred ccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 127 VWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206 (497)
Q Consensus 127 ~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~ 206 (497)
+- .++ +|.+.|+++.|+.| +.+++ +|+ ||||||++.|.+|||+|+.+ +.++..+..|++++.+
T Consensus 83 p~----dED----vHtanErrL~eliG-~~agK-lHT------gRSRNDQV~TDlRLw~r~~i-~~~~~~l~~L~~~~v~ 145 (464)
T KOG1316|consen 83 PN----DED----VHTANERRLTELIG-EIAGK-LHT------GRSRNDQVVTDLRLWLRDAI-DTILGLLWNLIRVLVD 145 (464)
T ss_pred CC----chh----hhhHHHHHHHHHHh-hhhhh-ccc------CccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 63 344 45557899999999 66777 997 89999999999999998765 7999999999999999
Q ss_pred HHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHH
Q 010908 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAE 285 (497)
Q Consensus 207 ~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~ 285 (497)
+|+.+.+++||||||+|.|||+.|.||+.+++.+|.||..||.+++.|++++|||+||. |+++++|+. -+++
T Consensus 146 rAe~~~dvlmpGYTHLQRAQpvrwsH~LlSha~~l~~D~~Rl~q~~~R~n~~PLGagALAGnpl~iDR~-------~la~ 218 (464)
T KOG1316|consen 146 RAEAELDVLMPGYTHLQRAQPVRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGAGALAGNPLGIDRE-------FLAE 218 (464)
T ss_pred HHhhccCeeccChhhhhhccCchhHHHHHHHHHHHHhHHHHHHHHHHHhccCCcccchhcCCCCCccHH-------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 999999994 5999
Q ss_pred HcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHH
Q 010908 286 ETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCE 364 (497)
Q Consensus 286 ~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E 364 (497)
.|||.. +..|+++|++.||+++|+..+.++++.+|+|+|+|+.+|+|. |||+|.+.+. .+|||+||||+||+.+|
T Consensus 219 ~LgF~~-v~~NSm~AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~t~---EF~Fv~lSDaySTGSSlMPQKKNpDslE 294 (464)
T KOG1316|consen 219 ELGFEG-VIMNSMDAVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYSTK---EFGFVTLSDAYSTGSSLMPQKKNPDSLE 294 (464)
T ss_pred hcCCcc-cchhhhhccccchhHHHHHHHHHHHHHHHHHHhhHhheeecc---ccCceeeccccccCcccCCCCCCCCHHH
Confidence 999999 788999999999999999999999999999999999999985 8999999986 89999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHhhcc---cc-cccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHh
Q 010908 365 ALTMVCAQVIGNHVAITVGGS---NG-HFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLM 440 (497)
Q Consensus 365 ~i~~~a~~v~g~~~~~~~~~~---~g-~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~ 440 (497)
.+|+++++|.|+.+++++... +. +-+++.-+ ..++++...+.+.+...+ .++.+++||+++|++.|.. .+
T Consensus 295 LlRgksgrV~gdl~g~lmt~KG~PstYnkDlQeDK----ep~Fds~~tv~~~l~v~t-gv~stltvn~e~m~~aLt~-dm 368 (464)
T KOG1316|consen 295 LLRGKSGRVFGDLTGLLMTLKGLPSTYNKDLQEDK----EPLFDSSKTVSDSLQVAT-GVISTLTVNQENMEKALTP-DM 368 (464)
T ss_pred HhccccceehhhhHHHHHHhcCCccccccchhhhh----hHHHhhHHHHHHHHHHHH-HHhhheeECHHHHhhccCc-hh
Confidence 999999999999999988642 22 23333333 237899999999999996 6999999999999999986 78
Q ss_pred HHHhhCcc-----ccHHHHHHH----HHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCccccc
Q 010908 441 LVTSLNPK-----IGYDNAAAV----AKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMI 493 (497)
Q Consensus 441 l~t~La~~-----ig~~~A~~i----a~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~ 493 (497)
++|.||++ ++|+.+|+| +..|.+.|.++.++.+++ .++-++++-..+|.++-|
T Consensus 369 lATdlA~YLVrKGvPFRqtHhisG~~V~~ae~rg~~l~~LsledlqklsplF~eDv~~v~~ye~sV 434 (464)
T KOG1316|consen 369 LATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLSPLFEEDVFCVFNYENSV 434 (464)
T ss_pred hHhHHHHHHHHcCCCchhhhhhhHHHHHHHHHcCCCcccCCHHHHhhcCcccccchHHhhchhhhH
Confidence 99999886 589999864 567888998877665542 455567777778777654
No 38
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=7.5e-66 Score=530.44 Aligned_cols=334 Identities=19% Similarity=0.231 Sum_probs=291.4
Q ss_pred cCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccccc
Q 010908 52 DKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQT 130 (497)
Q Consensus 52 ~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~ 130 (497)
+.+||.+.++.+ |+ ++++|++|+.||+|+|.+|.++| ||++.+++|.++|+++. .+..+.
T Consensus 12 ~~~~~~~~~~~~--~s--------~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~---------~d~~~~ 72 (351)
T PRK05975 12 SGLFGDDEIAAL--FS--------AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETFE---------PDLAAL 72 (351)
T ss_pred hccCCCHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC---------CCHHHH
Confidence 348999999999 74 89999999999999999999999 99999999999997642 111121
Q ss_pred Cccccc-ccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 131 GSGTQS-NMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209 (497)
Q Consensus 131 g~g~~~-~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~ 209 (497)
+.++.. .+++++++. .+.+.+|++.|+| || +|+||||++||+++|++++. +..|.+.|..|+++|.++|+
T Consensus 73 ~~~~~~~g~~v~~~v~-~l~~~~g~~~~~~-vH------~G~TsnDi~dTa~~L~lr~~-l~~l~~~L~~l~~~L~~lA~ 143 (351)
T PRK05975 73 RHATARDGVVVPALVR-QLRAAVGEEAAAH-VH------FGATSQDVIDTSLMLRLKAA-SEILAARLGALIARLDALEA 143 (351)
T ss_pred hhHHHhcCCcHHHHHH-HHHHHhCchhhCc-cc------CCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 222322 266666654 4556677555656 66 69999999999999998765 57999999999999999999
Q ss_pred HccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCC
Q 010908 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 289 (497)
Q Consensus 210 ~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl 289 (497)
+|+||+|+||||+|||+|+||||||++|+++|.|+++||..++++++.+|||| |+||+.+. ++++..+.+++|+.|||
T Consensus 144 ~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~~~~lGG-AvGt~~~~-~~~~~~~~~~~a~~LGl 221 (351)
T PRK05975 144 TFGQNALMGHTRMQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGG-AAGTLEKL-GGKAAAVRARLAKRLGL 221 (351)
T ss_pred HhCCCeeecccCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-HhccCccC-CCcHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999 99998774 45568899999999999
Q ss_pred CCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCCCCCChhHHHHHHHH
Q 010908 290 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMV 369 (497)
Q Consensus 290 ~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP~K~NP~~~E~i~~~ 369 (497)
+.++ .|+++||++++++++|+.++++|+|||+||++|+| +| ||+.+|. ++||||||||+||+.+|.++++
T Consensus 222 ~~~~-----~~~~~rD~~~e~~~~la~la~~l~kiA~Di~ll~s---~e-gev~~~~-~~GSS~MPhKrNPv~~E~i~~~ 291 (351)
T PRK05975 222 EDAP-----QWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQ---AG-DEISLSG-GGGSSAMPHKQNPVAAETLVTL 291 (351)
T ss_pred CCCc-----chhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC-CcccCCC-CCccCCCCCCcCcHHHHHHHHH
Confidence 8643 36799999999999999999999999999999995 59 9999997 6999999999999999999999
Q ss_pred HHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhcccc
Q 010908 370 CAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQA 426 (497)
Q Consensus 370 a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~v 426 (497)
++.+.++..++. .....++|++...|...|..||++..+.+++...+..+++||++
T Consensus 292 ar~~~~~~~~~~-~~~~~~~er~~~~~~~e~~~lp~~~~~~~~~l~~~~~ll~~l~~ 347 (351)
T PRK05975 292 ARFNATQVSGLH-QALVHEQERSGAAWTLEWMILPQMVAATGAALRLALELAGNIRR 347 (351)
T ss_pred HHHHHHHHHHHH-hcccchhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 999999876554 45667889888888899999999999999999999999999864
No 39
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=1.7e-65 Score=524.91 Aligned_cols=323 Identities=39% Similarity=0.492 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCC
Q 010908 80 VRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 158 (497)
Q Consensus 80 i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~ 158 (497)
+++|+.+++|++.++.+.| ||+++++.|.++|+++..+..... ..+++.+++.++++ ++.+.+.+|++.|+
T Consensus 1 ~~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~----e~~l~~~~g~~~~~ 72 (325)
T cd01334 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQ----VEQEGSGTHDVMAV----EEVLAERAGELNGG 72 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccC----eeeCCCCccHHHHH----HHHHHHHhccccCC
Confidence 3678889999999999999 999999999999999875432222 23455667777775 45556777854466
Q ss_pred ccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHH
Q 010908 159 KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYT 238 (497)
Q Consensus 159 ~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~ 238 (497)
| +| +|+||||+++|+++|++++.+ ..+.+.|.+++++|.++|++|++|+||||||+|||||||||||+++|+
T Consensus 73 ~-lH------~G~S~nDi~~ta~~l~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~ 144 (325)
T cd01334 73 Y-VH------TGRSSNDIVDTALRLALRDAL-DILLPALKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWA 144 (325)
T ss_pred C-Cc------cCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCcEeecccccccCccccHHHHHHHHH
Confidence 6 77 599999999999999997764 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHH
Q 010908 239 TQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVA 318 (497)
Q Consensus 239 ~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la 318 (497)
++|.|+++||.+++++++.+|||+||+||+...+ ..+.+++++.|||.. +.+|+++++++||++++++++++.++
T Consensus 145 ~~l~r~~~rL~~~~~~~~~~~lG~gA~g~~~~~~----~~~~~~~a~~LG~~~-~~~~~~~a~~~rd~~~e~~~~l~~~~ 219 (325)
T cd01334 145 AELERDLERLEEALKRLNVLPLGGGAVGTGANAP----PIDRERVAELLGFFG-PAPNSTQAVSDRDFLVELLSALALLA 219 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcHhHHhCcCCCC----cchHHHHHHHhcCcC-cCcCHHHHHhCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999977998765443 345689999999965 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhh
Q 010908 319 ASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 397 (497)
Q Consensus 319 ~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~ 397 (497)
.+|+|||+||++|+|+ |||||.+|+. ++||||||||+||+.+|.++++|+++.|...++..+..+.+++.+...+.
T Consensus 220 ~~l~ria~Dl~~~~~~---e~gev~~~~~~~~gSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 296 (325)
T cd01334 220 VSLSKIANDLRLLSSG---EFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPV 296 (325)
T ss_pred HHHHHHHHHHHHHcCC---CCCeEECCCCCCCCcccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHhcCchhhhcccHH
Confidence 9999999999999964 8999999987 89999999999999999999999999999999988777777765544443
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhccccC
Q 010908 398 IASGLLHSLRLLGDASASFEKNCVRGIQAN 427 (497)
Q Consensus 398 ~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn 427 (497)
....+++.+..+.+++..+. .++++|+||
T Consensus 297 ~~~~l~~~~~~~~~~l~~~~-~~~~~l~v~ 325 (325)
T cd01334 297 EREALPDSFDLLDAALRLLT-GVLEGLEVN 325 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCcCEeC
Confidence 33455566666777777775 688999987
No 40
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2.1e-64 Score=534.75 Aligned_cols=407 Identities=17% Similarity=0.161 Sum_probs=316.6
Q ss_pred cccccCccCh--HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-C---CHHHHHH---HHHHHHHHHccc
Q 010908 48 LVPSDKLWGA--QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-L---DPAIGKA---IMQAAQEVAEGK 118 (497)
Q Consensus 48 ~~p~~~~~g~--~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i---~~~~a~~---I~~a~~ev~~~~ 118 (497)
..|.+.+|+. ..++.+ |+ +++++++|++||.|++.++.++| + |+..++. |.+.+.++..
T Consensus 9 ~~p~~~ry~~~~~e~~~~--~s--------~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~~~~~-- 76 (456)
T PRK09285 9 LSPLDGRYASKTAALRPI--FS--------EFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVENFSE-- 76 (456)
T ss_pred CCCCccccCCCCHHHHHH--hC--------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhCc--
Confidence 3477789998 888888 74 68999999999999999999997 4 4444444 7776633210
Q ss_pred cCCCCcccccccCcccccccchHHHHHHHHHHHhCc-----cCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHH-
Q 010908 119 LNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH-----KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR- 192 (497)
Q Consensus 119 ~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~-----~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~- 192 (497)
+.|.. +...... +..++ ..+++.+.+.+|. +.|+| || +|+||||++||+++|++++. +..
T Consensus 77 --~d~~~--i~~~e~~-~~hdv-~a~~~~l~~~~~~~~~~~~~~~~-vH------~G~Ts~Di~dTa~~L~lr~~-l~~~ 142 (456)
T PRK09285 77 --EDAAR--IKEIERT-TNHDV-KAVEYFLKEKLAGLPELEAVSEF-IH------FACTSEDINNLSHALMLKEA-REEV 142 (456)
T ss_pred --ccHHH--HHHHHHH-hCCCh-HHHHHHHHHHhcccCcchhHHhH-cc------CCCChhhHHHHHHHHHHHHH-HHHH
Confidence 01111 1000000 01111 2356777888872 45666 77 59999999999999999766 467
Q ss_pred HHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccC-CCC
Q 010908 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTG-LNT 271 (497)
Q Consensus 193 L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~-~~~ 271 (497)
+.+.|..++++|.++|++|++++|+||||+|||+|||||+||++|+++|.|+++||..+ ...+++|| |+||. .+.
T Consensus 143 l~~~L~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~---~~~g~~~G-AvGt~~a~~ 218 (456)
T PRK09285 143 LLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQLEAV---EILGKING-AVGNYNAHL 218 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeeceecCCCCeeehHHHHHHHHHHHHHHHHHHHHHH---HHhhhccc-ccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998 35566776 89984 221
Q ss_pred C--CCc-hHHHHHHHHHHcCCCCCCCCChhhH-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC
Q 010908 272 K--KGF-DVKIASAVAEETSLPFVTAENKFEA-LAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN 347 (497)
Q Consensus 272 ~--~~~-~~~v~~~la~~LGl~~~~~~n~~da-~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~ 347 (497)
. ++. +..+.+.+++.|||..++. +| +.+||++++++++|+.++++|+|||+||++|++ ..|++|.. +++
T Consensus 219 ~~~~~~~~~~v~~~~~~~LGL~~~~~----~~~v~~rD~~~e~~~~la~~a~~L~kia~Di~ll~~--~~e~~e~~-~~~ 291 (456)
T PRK09285 219 AAYPEVDWHAFSREFVESLGLTWNPY----TTQIEPHDYIAELFDAVARFNTILIDLDRDVWGYIS--LGYFKQKT-KAG 291 (456)
T ss_pred hhcCCccHHHHHHHHHHHhCCCCCCC----ccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhhhccC-CCC
Confidence 0 222 3578889999999987443 34 699999999999999999999999999999997 33455532 457
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccC
Q 010908 348 EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQAN 427 (497)
Q Consensus 348 ~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn 427 (497)
++|||||||||||+.+|.++++++.+.+....+.......++|++...+...|.+ +.+..+...+......+++||+||
T Consensus 292 ~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD~~~~~~e~~~-~~~~~~~~~~l~~~~~~l~~L~V~ 370 (456)
T PRK09285 292 EIGSSTMPHKVNPIDFENSEGNLGLANALLEHLAAKLPISRWQRDLTDSTVLRNL-GVAFGYSLIAYDSLLKGLGKLEVN 370 (456)
T ss_pred CCCCCCCCCCcCchHHHHHHHHHHHHHHHHHHHHhhccHHhhCCcCchhhhhcch-HHHHHHHHHHHHHHHHHHccCEEC
Confidence 9999999999999999999999999998876665433355688877777777888 666666666666667899999999
Q ss_pred HHHHHHHhhhhHhHHH-----hhCccccHHHHHHHHH----HHHHcCCCHHHH---HHHcCCCCHHHHhhccCcccccCC
Q 010908 428 RERISKLLHESLMLVT-----SLNPKIGYDNAAAVAK----KAHKEGTTLKDA---ALKLGVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 428 ~erm~~~l~~s~~l~t-----~La~~ig~~~A~~ia~----~a~~~g~~l~e~---~~~~~~l~~~el~~~ldp~~~~g~ 495 (497)
++||++|++.++++.+ .|++ +|+++||++++ .+.++|.+|+|+ +.++..+. ++| .+|||++|+|.
T Consensus 371 ~~rm~~nl~~~~~~~sE~~~~~l~~-~gr~~A~~~v~~~~~~~~~~~~~~~e~~~~l~~~~~~~-~~l-~~~~p~~ylg~ 447 (456)
T PRK09285 371 EARLAEDLDANWEVLAEPIQTVMRR-YGIENPYEKLKELTRGKRITAEALREFIDGLDLPEEAK-ARL-KALTPANYIGL 447 (456)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHH-hChHhHHHHHHHHHHHHHhccCCHHHHHHHhcCCHhHH-HHH-HcCCHHHHHhh
Confidence 9999999988777543 4566 89999987665 456789999999 76655444 779 99999999985
No 41
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=4.1e-64 Score=524.47 Aligned_cols=372 Identities=14% Similarity=0.108 Sum_probs=305.5
Q ss_pred ccCh----HhH-HHhhcC-ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccc
Q 010908 54 LWGA----QTQ-RSLQNF-DIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLV 126 (497)
Q Consensus 54 ~~g~----~~~-rai~~F-~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~ 126 (497)
.||+ .+. ..++.| +.|- ..+..+++.-..+..||+.++.+.| ||++++.+|.++++++.+ +.|+++
T Consensus 3 lw~gr~~~~~~~~~~~~~~~~s~---~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~L~~i~~----~~~~~~ 75 (434)
T PRK06389 3 IWSGGAGEELENDFYDNIVKDDI---DADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYK----NGIEID 75 (434)
T ss_pred CcccccCCCCchHHHHHHHCCCH---HHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc----CCCcCC
Confidence 5655 233 456667 3222 3466777777889999999999999 999999999999999976 456665
Q ss_pred ccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 127 VWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206 (497)
Q Consensus 127 ~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~ 206 (497)
+- .+| +|..||+++++.+| +.|++ +|+ ||||||++.|++||++++++ ..+...+.+|+++|.+
T Consensus 76 ~~----~ED----vh~~iE~~L~~~~G-~~gg~-lht------gRSRNDqvat~~RL~~r~~~-~~~~~~l~~l~~~l~~ 138 (434)
T PRK06389 76 LD----LED----VHTAIENFVIRRCG-DMFKN-FRL------FLSRNEQVHADLNLFIIDKI-IEIEKILYEIIKVIPG 138 (434)
T ss_pred CC----CCc----hHHHHHHHHHHHhc-hhhhh-hcc------cCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 42 344 55558999999999 68889 996 99999999999999998886 5999999999999996
Q ss_pred HHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHH
Q 010908 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAE 285 (497)
Q Consensus 207 ~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~ 285 (497)
+ |.|++||||||+|||||+||||||++|+++|.|+++||..++++++.+|||.|+. ||.+++++ +++|+
T Consensus 139 ~---~~dtimpGyTHlQ~AqP~TfG~~l~a~a~~L~rd~~RL~~~~~r~~~~pLGaga~~Gt~~~idr-------~~~A~ 208 (434)
T PRK06389 139 F---NLKGRLPGYTHFRQAMPMTVNTYINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSPSSVKF-------NQMSE 208 (434)
T ss_pred H---ccCceeccccccCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCCchhhH-------HHHHH
Confidence 5 9999999999999999999999999999999999999999999999999987665 88777654 78999
Q ss_pred HcCCCCCCCCChhhHhhcchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCC-CCCCCCCCCCCChhHH
Q 010908 286 ETSLPFVTAENKFEALAAHDA-FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQC 363 (497)
Q Consensus 286 ~LGl~~~~~~n~~da~~~rD~-~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~-~~GSSiMP~K~NP~~~ 363 (497)
+|||+. +..|++++..++|+ +++++++++.++++|+|||+||++|+|+ |++++|+. ++||||||||+||+.+
T Consensus 209 lLGf~~-~~~n~~~a~~~~~~~~~e~~~~la~la~~LsRiA~Dl~l~ss~-----g~ielpd~~~~GSSiMPqKrNP~~~ 282 (434)
T PRK06389 209 LLGMEK-NIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYEN-----GIITIPDEFTTGSSLMPNKRNPDYL 282 (434)
T ss_pred HhCCCC-CCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CEEEecCCCCCCCCCCCCCcCcHHH
Confidence 999999 56677777666655 8899999999999999999999999973 88889986 8999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHH
Q 010908 364 EALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT 443 (497)
Q Consensus 364 E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t 443 (497)
|.++++|+++.|..+++.....+-.+..+-..-..-..+++.++.+.+++..+. .++++++||++| ++... +..++|
T Consensus 283 E~ir~~a~~v~g~~~~~~~~~~n~~~~y~~D~q~~~~~~~~~~~~~~~~l~l~~-~~i~~l~~~~~~-~~a~~-~~~~AT 359 (434)
T PRK06389 283 ELFQGIAAESISVLSFIAQSELNKTTGYHRDFQIVKDSTISFINNFERILLGLP-DLLYNIKFEITN-EKNIK-NSVYAT 359 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCeECHHH-Hhhcc-CCCcHH
Confidence 999999999999988876543222221111111112347888899999999996 799999999999 55554 344588
Q ss_pred hhCc-----cccHHHHHHHHHHHHHcCCCH
Q 010908 444 SLNP-----KIGYDNAAAVAKKAHKEGTTL 468 (497)
Q Consensus 444 ~La~-----~ig~~~A~~ia~~a~~~g~~l 468 (497)
++|. .++|++||+++.++.+++.-+
T Consensus 360 dlA~~lv~~GipFR~AH~~Vg~~V~~~~~~ 389 (434)
T PRK06389 360 YNAWLAFKNGMDWKSAYAYIGNKIREGEVL 389 (434)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccch
Confidence 7765 368999999998888877653
No 42
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=1.5e-62 Score=515.54 Aligned_cols=389 Identities=17% Similarity=0.132 Sum_probs=298.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCH------HHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHH
Q 010908 76 PEPIVRAFGILKKCAAKVNMEYG-LDP------AIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA 148 (497)
Q Consensus 76 ~~~~i~a~~~v~~A~A~a~~~~G-i~~------~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~ 148 (497)
+++++++|++||.|++.++.++| ||+ +.++.|.+++.... .+.+..+..... .+..++ ..+++.+
T Consensus 7 ~~~~~~~~l~vE~ala~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~------~~d~~~~~~~~~-~~~hdv-~al~~~l 78 (425)
T cd01598 7 EYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFS------EEDALRIKEIEA-TTNHDV-KAVEYFL 78 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhhcC------ccCHHHHHHHHH-HHCCCc-HHHHHHH
Confidence 78999999999999999999999 999 99999999885310 000000000000 001111 2356777
Q ss_pred HHHhCc-----cCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccccc
Q 010908 149 AEILGH-----KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQ 223 (497)
Q Consensus 149 ~e~lg~-----~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q 223 (497)
.+.+|. +.|+| || +|+||||++||+++|++++.+.+.+.+.|..|+++|.++|++|++|+|+||||+|
T Consensus 79 ~~~~g~~~~~~~~~~~-vH------~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~Q 151 (425)
T cd01598 79 KEKFETLGLLKKIKEF-IH------FACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQ 151 (425)
T ss_pred HHHhcccccchhhhhH-hc------cCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCc
Confidence 888872 34456 66 6999999999999999987654567899999999999999999999999999999
Q ss_pred cCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCC----CCc-hHHHHHHHHHHcCCCCCCCCChh
Q 010908 224 DATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK----KGF-DVKIASAVAEETSLPFVTAENKF 298 (497)
Q Consensus 224 ~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~----~~~-~~~v~~~la~~LGl~~~~~~n~~ 298 (497)
||+|||||+||++|+++|.|+++||.++. ..+.+|| |+|| ++.. +++ ...+.+.+++.|||..++.+|
T Consensus 152 ~A~P~TfG~~~a~w~~~L~r~~~RL~~~~---~~g~~gG-avGt-~~~~~~~~~~~~~~~~~~~~a~~LgL~~~~~~~-- 224 (425)
T cd01598 152 PATPTTLGKELAVFVYRLERQYKQLKQIE---ILGKFNG-AVGN-FNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTT-- 224 (425)
T ss_pred cCeehhHHHHHHHHHHHHHHHHHHHHHHH---HhheeeC-chhh-hhhhhhccCcccHHHHHHHHHHHhCcCCCCccc--
Confidence 99999999999999999999999999984 4455776 9999 3332 333 478999999999999866664
Q ss_pred hHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEc--CCCCCCCCCCCCCCChhHHHHHHHHHHHhhhh
Q 010908 299 EALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL--PENEPGSSIMPGKVNPTQCEALTMVCAQVIGN 376 (497)
Q Consensus 299 da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~l--p~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~ 376 (497)
.+++||++++++++|+.++++|+|||+||++|+|. ||+.+ +++++||||||||+||+.+|+++++++.+.+.
T Consensus 225 -~v~~rD~~~e~~~~La~la~~L~kia~Di~ll~s~-----ge~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~a~~~ 298 (425)
T cd01598 225 -QIEPHDYIAELFDALARINTILIDLCRDIWGYISL-----GYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNAL 298 (425)
T ss_pred -chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----cceeecCCCCCCCcCCCCCCcCchHHHHHHHHHHHHHHH
Confidence 26999999999999999999999999999999963 44443 45699999999999999999999999998888
Q ss_pred hhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHH-----hhCccccH
Q 010908 377 HVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT-----SLNPKIGY 451 (497)
Q Consensus 377 ~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t-----~La~~ig~ 451 (497)
...+.......++|++...+...|.+ +.+..+...+...+..+++||+||++||++|++.++++++ .|++ +|+
T Consensus 299 ~~~~~~~~~~~~~eRD~~~~~~e~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~~~~~i~sE~~~~~l~~-~gr 376 (425)
T cd01598 299 LNHLSAKLPISRLQRDLTDSTVLRNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWEVLAEPIQTVMRR-YGI 376 (425)
T ss_pred HHHHHhhhhhhhhcccccchhhhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCHHHHHHHHHHHh-cCh
Confidence 75555433255688877777777778 6665655555555578999999999999999988877553 3566 899
Q ss_pred HHHHHHHHHHHH-cCCCHHH---HHHHcCCCCHHHHh--hccCcccccCC
Q 010908 452 DNAAAVAKKAHK-EGTTLKD---AALKLGVLNSEEFD--NLVVPEKMIGP 495 (497)
Q Consensus 452 ~~A~~ia~~a~~-~g~~l~e---~~~~~~~l~~~el~--~~ldp~~~~g~ 495 (497)
++||+++.++.. ...+..| ...+.+ .+++.-+ ..+.|.+|+|.
T Consensus 377 ~~Ah~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 425 (425)
T cd01598 377 PNPYEKLKDLTRGKRIDKETLKEFIDSLD-IPEEAKAELLALTPANYIGL 425 (425)
T ss_pred HhHHHHHHHHhCCCCCCHHHHHHHHHhCC-CCHHHHHHHHhCCccccCCc
Confidence 999999988755 2333322 222221 2322222 34689999983
No 43
>PLN02848 adenylosuccinate lyase
Probab=100.00 E-value=3.5e-62 Score=517.14 Aligned_cols=406 Identities=17% Similarity=0.153 Sum_probs=313.5
Q ss_pred ccccCccCh--HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-C---CH---HHHHHHHHHHHHHHcccc
Q 010908 49 VPSDKLWGA--QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-L---DP---AIGKAIMQAAQEVAEGKL 119 (497)
Q Consensus 49 ~p~~~~~g~--~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i---~~---~~a~~I~~a~~ev~~~~~ 119 (497)
.|.+.+|+. +.++.+ |+ +++++++|++||.|++.++.+.| | |+ +.++.|.+++.++..+
T Consensus 13 ~pl~~ry~~~~~e~~~i--fS--------d~a~~~~~l~vE~ala~a~a~~g~i~~~P~i~~~aa~~i~~~~~~~~~~-- 80 (458)
T PLN02848 13 SPLDGRYWSKVKDLRPI--FS--------EFGLIRYRVLVEVKWLLKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVD-- 80 (458)
T ss_pred CCchhhhcCCcHHHHHH--cC--------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCHh--
Confidence 478889998 899999 74 78999999999999999999999 9 88 9999998887332000
Q ss_pred CCCCcccccccCcccccccchHHHHHHHHHHHhCc--c---CCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHH-H
Q 010908 120 NDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH--K---RGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR-L 193 (497)
Q Consensus 120 ~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~--~---~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~-L 193 (497)
.+..+.... ..++.++- .+++.+.+.++. + .++| || +|+|||||+||+++|++++.+ .. |
T Consensus 81 ----d~~~~~~~e-~~t~hdv~-a~~~~l~~~~~~~~~~~~~~~~-vH------~G~TsqDi~dTa~~L~lr~a~-~~~l 146 (458)
T PLN02848 81 ----DALEVKKIE-RVTNHDVK-AVEYFLKQKCKSHPELAKVLEF-FH------FACTSEDINNLSHALMLKEGV-NSVV 146 (458)
T ss_pred ----hHHHHHHHH-HHhCCCcH-HHHHHHHHHhccccchhhhhCc-cc------CCCCHHHHHHHHHHHHHHHHH-HHHH
Confidence 000000000 00111121 235677778862 2 3355 66 699999999999999997664 67 9
Q ss_pred HHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCC--
Q 010908 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT-- 271 (497)
Q Consensus 194 ~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~-- 271 (497)
.+.|..|+++|.++|++|++++|+||||+|||+|||||+||++|+++|.|+++||..+. ..+++|| ||||....
T Consensus 147 ~~~L~~l~~aL~~lA~~~~dt~m~GRTH~Q~A~PiTfG~~~a~w~~~L~r~~~rL~~~~---l~g~~~G-AvGt~aa~~~ 222 (458)
T PLN02848 147 LPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMANFAYRLSRQRKQLSEVK---IKGKFAG-AVGNYNAHMS 222 (458)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHH---hccEeec-ccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999998872 3466666 78874332
Q ss_pred -CCCc-hHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CC
Q 010908 272 -KKGF-DVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--EN 347 (497)
Q Consensus 272 -~~~~-~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~ 347 (497)
.+++ +..+.+.+++.|||...+.. ..+++||++++++++|+.++.+|+|||+||+.|+ |+||+.++ ++
T Consensus 223 ~~~~~d~~~v~~~la~~LGL~~~~~~---~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~~-----e~ge~~e~~~~~ 294 (458)
T PLN02848 223 AYPEVDWPAVAEEFVTSLGLTFNPYV---TQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYI-----SLGYFKQITKAG 294 (458)
T ss_pred ccCCCCHHHHHHHHHHHhCCCCCCch---hhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCcccccCCC
Confidence 1445 37899999999999863222 2369999999999999999999999999998877 57777654 36
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccC
Q 010908 348 EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQAN 427 (497)
Q Consensus 348 ~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn 427 (497)
++|||||||||||+.+|.++++++.+.|....+......+++|++...+...|++ +.+..+...+......+++||+||
T Consensus 295 ~~GSS~MP~KrNPv~~E~i~~~a~~~~~~~~~~~~~~~~~~~eRD~~~s~~e~~~-~~~~~~~~~al~~~~~~l~~L~v~ 373 (458)
T PLN02848 295 EVGSSTMPHKVNPIDFENSEGNLGLANAELSHLSMKLPISRMQRDLTDSTVLRNM-GVGLGHSLLAYKSTLRGIGKLQVN 373 (458)
T ss_pred CCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhcCcchhhccccchhhhhccH-HHHHHHHHHHHHHHHHHHccCEEC
Confidence 8999999999999999999999999999988887654677888887777777888 666665555555556899999999
Q ss_pred HHHHHHHhhhhHhHH-----HhhCccccHHHHHHHHHHHHH-cCCC---HHHHHHHcCCCCHHHHhhc--cCcccccCC
Q 010908 428 RERISKLLHESLMLV-----TSLNPKIGYDNAAAVAKKAHK-EGTT---LKDAALKLGVLNSEEFDNL--VVPEKMIGP 495 (497)
Q Consensus 428 ~erm~~~l~~s~~l~-----t~La~~ig~~~A~~ia~~a~~-~g~~---l~e~~~~~~~l~~~el~~~--ldp~~~~g~ 495 (497)
++||++|++.++++. +.|++ +|+++||++++++.. +..+ +++..... .++++.-+++ +.|.+|+|.
T Consensus 374 ~~rm~~nl~~~~~~~sE~~~~~l~~-~G~~~A~e~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~y~g~ 450 (458)
T PLN02848 374 EARLAEDLDQTWEVLAEPIQTVMRR-YGVPEPYEKLKELTRGRAVTKESMREFIEGL-ELPEEAKDQLLKLTPHTYIGA 450 (458)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHH-hChHHHHHHHHHHHHHccCCHHHHHHHHHHc-CCCHHHHHHHHhCCchhhhch
Confidence 999999999887764 34666 899999999987653 3342 22222222 2454444444 679999985
No 44
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=100.00 E-value=6.1e-64 Score=510.64 Aligned_cols=307 Identities=32% Similarity=0.435 Sum_probs=263.9
Q ss_pred CcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHc-cccCCC
Q 010908 45 GPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAE-GKLNDH 122 (497)
Q Consensus 45 g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~-~~~~~~ 122 (497)
|.+++|.+.+|+..+.++..+|. +......+++|+++|+++.| ||++++++|.++|+++.. ....+.
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~-----------l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a~~~i~~~~~~~~~ 69 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFW-----------LAEYDIRVEAALAKALAEAGIIPKEAADAIVKALEEILEDGDLDDA 69 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHH-----------HHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTCTHGH
T ss_pred CCcCCchHHHHHHHCHHHHhCCE-----------eeccHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhccccc
Confidence 77899999999998888885552 12223338999999999999 999999999999999987 455567
Q ss_pred CcccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 123 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHN 202 (497)
Q Consensus 123 f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~ 202 (497)
|+++..+++.++.+++++++++. |++| .. .+++.|||+|+||||+++|+++|++++.+.+.|.+.|..|++
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~----e~~~----~~-~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~ 140 (312)
T PF00206_consen 70 FELDEIEEDIGHAVEANLNEVLG----ELLG----EP-PEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALID 140 (312)
T ss_dssp HHHCSCSSSHHHHHHHHHHHHHH----HHHT----HS-SGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccchhHHHHHHHHHhh----hhhh----cc-ccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88988888887777777776665 4444 12 567777888999999999999999987754679999999999
Q ss_pred HHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHH
Q 010908 203 SLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIAS 281 (497)
Q Consensus 203 ~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~ 281 (497)
+|.++|++|++|+||||||+|||+|||||+||++|+++|.|+++||++++++++.+||||++. ||+++.+++|...+.+
T Consensus 141 ~L~~~a~~~~~t~~~grTh~Q~A~P~T~G~~~a~~~~~l~r~~~rL~~~~~~~~~~~lgga~g~gt~~~~~~~~~~~~~~ 220 (312)
T PF00206_consen 141 ALAELAEEHKDTPMPGRTHGQPAQPTTFGHKLAAWADELARDLERLEEARKRLNVSPLGGAVGAGTSLGIDREFQERVAE 220 (312)
T ss_dssp HHHHHHHHTTTSEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEETTTTTTTSSHTTSHHHHHHHHHH
T ss_pred HHHHHHHhhcCceeccccccccccceeHHHHHHHHHHHHHHHHHHHHHhHhHHHHHhccCCCccccccccCcchhhhHHh
Confidence 999999999999999999999999999999999999999999999999999999999999433 6666666666667777
Q ss_pred HHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCC
Q 010908 282 AVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVN 359 (497)
Q Consensus 282 ~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~N 359 (497)
.|++.+|++ .+..|.++++++||++++++++++.++.+|+|||+||++|+|+ |+||+++|. .++|||+||||+|
T Consensus 221 ~L~~~~~l~-~~~~~~~~~~~~rd~~~e~~~~l~~l~~~l~kia~Dl~~~~s~---e~g~~~~~~~~~~~GSS~MP~K~N 296 (312)
T PF00206_consen 221 ELGEFTGLG-VPAPNWHDAVSSRDRLAELASALALLAGTLSKIAEDLRLLSST---EIGEVEEPFPEGQVGSSIMPHKRN 296 (312)
T ss_dssp HHHHHHCST-EECSSHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TTSSEEEEGGGSSSCSSSSTTCEE
T ss_pred hhhhhhhcc-cchhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ceeeeecccccccCCCccCCCCCC
Confidence 777777777 4788999999999999999999999999999999999999976 588888774 5779999999999
Q ss_pred hhHHHHHHHHHHHhhh
Q 010908 360 PTQCEALTMVCAQVIG 375 (497)
Q Consensus 360 P~~~E~i~~~a~~v~g 375 (497)
|+.+|.++++|++|.|
T Consensus 297 P~~~E~i~~~a~~v~G 312 (312)
T PF00206_consen 297 PVILENIRGLARQVIG 312 (312)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCcC
Confidence 9999999999999987
No 45
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.5e-42 Score=347.04 Aligned_cols=411 Identities=19% Similarity=0.178 Sum_probs=323.8
Q ss_pred ccccccCccCh-HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHccccCCC
Q 010908 47 ILVPSDKLWGA-QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG---LDPAIGKAIMQAAQEVAEGKLNDH 122 (497)
Q Consensus 47 ~~~p~~~~~g~-~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G---i~~~~a~~I~~a~~ev~~~~~~~~ 122 (497)
+++|...+|.. ..+..+ |+ ..+....|-+++--+|.+..++| |+++.++.+...++- . ...
T Consensus 6 ~~~pls~ry~~~~~l~~~--~s--------~~~~~~twr~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~-e----~~d 70 (481)
T KOG2700|consen 6 YKSPLSGRYASISELNPI--FS--------DRNKFSTWRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDI-E----NID 70 (481)
T ss_pred CCCcccceeccccccchh--hh--------hhhhhhhhhHHHHhhhhhhhcCCcccchHHHHHHHHhhccc-c----ccc
Confidence 78899889976 666666 43 24556666666666666666555 888888888876641 1 111
Q ss_pred CcccccccCcccccccchHHHHH--HHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 123 FPLVVWQTGSGTQSNMNANEVIA--NRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVL 200 (497)
Q Consensus 123 f~~~~~q~g~g~~~~~n~nevi~--~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L 200 (497)
|+...-.++- --++|.+ +...+.|....| + +| +|+|+.++.|.+--+.+++. .+.+++.|...
T Consensus 71 ~~~l~~ee~r------~~hdVmahvh~~~~~cp~aag-i-ih------lgatsc~vtdnadli~~rd~-~k~i~~~l~~v 135 (481)
T KOG2700|consen 71 FTALSPEEGR------YRHDVMAHVHSFGELCPIAAG-I-IH------LGATSCFVTDNADLIELRDA-SKLILPYLAGV 135 (481)
T ss_pred hhhcChhhhh------hcccHHHHHHHHHhhcchhcc-e-EE------eeeeeeeecCCccceechhH-HHHHHHHHHHH
Confidence 2211111110 0123333 344566653333 6 78 59999999999998888654 68999999999
Q ss_pred HHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC------C
Q 010908 201 HNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK------G 274 (497)
Q Consensus 201 ~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~------~ 274 (497)
++.|...+.+|+++++.||||+|+|+|+|||++..-|..+|.+++++|..+++++....++| |.||..+... +
T Consensus 136 Idrls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~kg-a~gtqasf~~l~~~~~~ 214 (481)
T KOG2700|consen 136 IDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGLKG-ATGTQASFLSLFLGDMD 214 (481)
T ss_pred HHHHHHHHHHhccceecccccCccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-chhhHHHHHHhhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 8999654422 2
Q ss_pred chHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCC
Q 010908 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSS 352 (497)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSS 352 (497)
.-++..+.+++.+||......+ ..+.+|+...++...|+.+.++..|+|.|||+++. |+|+.+|- +|.|||
T Consensus 215 kv~~ld~Lv~k~~gf~~~~~~T--GQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~-----~~ev~epFea~q~gsS 287 (481)
T KOG2700|consen 215 KVEKLDSLVTKELGFVPMYIVT--GQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAK-----FAEVEEPFEAHQIGSS 287 (481)
T ss_pred HHHHHHHHHHHHhCCCcccccc--CCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccccccccccc
Confidence 2345667888999999865554 34789999999999999999999999999999993 99999994 599999
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHH
Q 010908 353 IMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 432 (497)
Q Consensus 353 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~ 432 (497)
.||+||||+.||.++++++.+++..+.....++-.|+|+....+-+.|-++|..++.+++.+....++..|+.|.+++|+
T Consensus 288 aMp~krNpm~~E~itslar~l~~~v~~al~~~~~qw~Ertl~dSa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~ 367 (481)
T KOG2700|consen 288 AMPYKRNPMRCERITSLARHLRPYVTQALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIE 367 (481)
T ss_pred cCCCCCCCchhHHHhHHHHHHHHHHHHHhhhHHHHHhhcccccccccceechHHHHHHHHHHHHHHHHHhhcccccHHHH
Confidence 99999999999999999999999987776556667888766555566779999999999999966799999999999999
Q ss_pred HHhhhhHhH------HHhhCcccc-HHHHHHHHH----HH----HHcCCCHHHHHHH--c--CCCCHHHHhhccCccccc
Q 010908 433 KLLHESLML------VTSLNPKIG-YDNAAAVAK----KA----HKEGTTLKDAALK--L--GVLNSEEFDNLVVPEKMI 493 (497)
Q Consensus 433 ~~l~~s~~l------~t~La~~ig-~~~A~~ia~----~a----~~~g~~l~e~~~~--~--~~l~~~el~~~ldp~~~~ 493 (497)
+++.....+ .++|.+..+ |+.||+.++ ++ .++|..+.+..+. + +....||++.+|||.+|+
T Consensus 368 r~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a~~~v~~e~g~~~~ie~~k~~~~~~~v~ee~~~ll~p~~f~ 447 (481)
T KOG2700|consen 368 RNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAAQVVKQEGGDNDLIERAKEDPTFKPVKEELDSLLDPLNFT 447 (481)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhcccccccchHHHHHhhccchhcc
Confidence 998766554 356887766 999987543 23 5567776554332 2 567789999999999999
Q ss_pred CC
Q 010908 494 GP 495 (497)
Q Consensus 494 g~ 495 (497)
|.
T Consensus 448 gr 449 (481)
T KOG2700|consen 448 GR 449 (481)
T ss_pred cc
Confidence 86
No 46
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=100.00 E-value=5.1e-35 Score=284.93 Aligned_cols=195 Identities=40% Similarity=0.462 Sum_probs=165.8
Q ss_pred cCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHH
Q 010908 162 HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQV 241 (497)
Q Consensus 162 H~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l 241 (497)
|...+||+|+||||+.+|+++++++.. +..+.+.+..+..++..++++|++++||||||+|+|+|+||||+|++|.+.|
T Consensus 32 ~~~~~~h~g~s~~d~~~t~~~~~~~~~-l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~th~q~A~p~t~g~~~~~~~~~l 110 (231)
T cd01594 32 HGSALVHKGRSSNDIGTTALRLALRDA-LDDLLPLLKALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVL 110 (231)
T ss_pred cCCCCCCCCCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCEeecccccccCccccHHHHHHHHHHHH
Confidence 333477899999999999999999766 4799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHH
Q 010908 242 KYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASL 321 (497)
Q Consensus 242 ~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L 321 (497)
.|+++||..+ +++++++.|+.++.+|
T Consensus 111 ~~~~~rL~~~------------------------------------------------------~~~~~~~~l~~~~~~l 136 (231)
T cd01594 111 GRDLERLEEA------------------------------------------------------AVAEALDALALAAAHL 136 (231)
T ss_pred HHHHHHHHHH------------------------------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999998 8899999999999999
Q ss_pred HHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhH
Q 010908 322 MKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIA 399 (497)
Q Consensus 322 ~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~ 399 (497)
+|||+|+++|++.| ++++.+|. .++|||+||||+||+.+|.+++++..+.|....+.....+++...+.......
T Consensus 137 ~r~a~d~~~~~~~~---~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 213 (231)
T cd01594 137 SKIAEDLRLLLSGE---FGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMR 213 (231)
T ss_pred HHHHHHHHHHcCCC---CCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHhcccccccccCHHHH
Confidence 99999999999865 67777776 48999999999999999999999999999988887665554444443333333
Q ss_pred HhHHHHHHHHHHHHH
Q 010908 400 SGLLHSLRLLGDASA 414 (497)
Q Consensus 400 ~~ll~~~~~l~~~~~ 414 (497)
..+++.+..+.+.+.
T Consensus 214 ~~~~~~~~~~~~~l~ 228 (231)
T cd01594 214 EILADSLLLLIDALR 228 (231)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555544443
No 47
>PRK08937 adenylosuccinate lyase; Provisional
Probab=99.97 E-value=6.9e-30 Score=247.23 Aligned_cols=177 Identities=26% Similarity=0.286 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhccccccc
Q 010908 313 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFE 390 (497)
Q Consensus 313 ~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e 390 (497)
+++.++.+|+|||+||++|+| +|||||.+|. .++||||||||+||+.+|.++++|.++.|+..++.... .+++|
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s---~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~-~~~~e 97 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQR---SEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTALENV-PLWHE 97 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cccceeecccccCCCCCccCCCccCcHHHHHHHHHHHHHHHHHHHHHHHh-HHHhc
Confidence 999999999999999999996 5999999994 58999999999999999999999999999998887655 77899
Q ss_pred ccchhhhhHHhHHH-HHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhH--HH----hhCc-cccHHHHHHHH----
Q 010908 391 LNVFKPMIASGLLH-SLRLLGDASASFEKNCVRGIQANRERISKLLHESLML--VT----SLNP-KIGYDNAAAVA---- 458 (497)
Q Consensus 391 ~~~~~~~~~~~ll~-~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l--~t----~La~-~ig~~~A~~ia---- 458 (497)
++...|...|..++ .+..+..++..+ ..|+.+++||++||++++..+..+ ++ .|++ .+|+++||+++
T Consensus 98 rd~~~~~~~~~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~ 176 (216)
T PRK08937 98 RDLSHSSAERIALPDAFLALDYILNRF-VNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKA 176 (216)
T ss_pred cCCchhHHHhhHHHHHHHHHHHHHHHH-HHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99888887775554 455555555555 589999999999999999974443 32 3443 47888888654
Q ss_pred HHHHHcCCCHHHHHHHcC----CCCHHHHhhccCcccccC
Q 010908 459 KKAHKEGTTLKDAALKLG----VLNSEEFDNLVVPEKMIG 494 (497)
Q Consensus 459 ~~a~~~g~~l~e~~~~~~----~l~~~el~~~ldp~~~~g 494 (497)
+.+.++|+++++.+.+++ .+++++++.++||++|+|
T Consensus 177 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~l~~~ldp~~~vg 216 (216)
T PRK08937 177 MEAWKNQKDLRELLEADERFTKQLTKEELDELFDPEAFVG 216 (216)
T ss_pred HHHHHhCCCHHHHHHhChHhHhcCCHHHHHHHhCHHhhcC
Confidence 567788999999988864 789999999999999987
No 48
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=99.26 E-value=3e-12 Score=96.72 Aligned_cols=55 Identities=47% Similarity=0.820 Sum_probs=49.4
Q ss_pred HHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCC
Q 010908 441 LVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 441 l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~ 495 (497)
++|+|+|++||++|.+++++|.++|++++|++.+.|.++++++|++|||++|++|
T Consensus 1 laTaL~p~iGYe~aa~iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~p~~mt~P 55 (55)
T PF10415_consen 1 LATALNPYIGYEKAAEIAKEALAEGRSVREVVLEEGLLTEEELDELLDPERMTNP 55 (55)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTTSS-HHHHHHHTSHHHHTT-
T ss_pred CeeeccchhccHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcCHHHcCCc
Confidence 4789999999999999999999999999999999999999999999999999986
No 49
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=97.81 E-value=2.4e-05 Score=64.04 Aligned_cols=55 Identities=27% Similarity=0.476 Sum_probs=43.8
Q ss_pred HHHhhCcc-ccHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 441 LVTSLNPK-IGYDNAAAVA----KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 441 l~t~La~~-ig~~~A~~ia----~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
++.+|++. +|+++||+++ .+|.++|.+|+|++.++ +.|++++|+++|||..|+|.
T Consensus 9 v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e~l~~d~~i~~~ls~~el~~l~dp~~ylg~ 72 (81)
T PF10397_consen 9 VMLALAEKGLGRQEAHELVQEAAMEAWENGRDLREVLLADPEIAAYLSEEELEELFDPESYLGN 72 (81)
T ss_dssp HHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHHHHCTTHHHHTTSHHHHHHHHT-GGGGCTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHhHCCHHHHHhhcCHHHHHhh
Confidence 34557777 9999998755 56788999999999975 68999999999999999986
No 50
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=95.88 E-value=0.0037 Score=49.70 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=36.6
Q ss_pred hHHHhhCcc-----ccHHHHHHH----HHHHHHcCCCHHHHHHH-----cCCCCHHHHhhccCcccccC
Q 010908 440 MLVTSLNPK-----IGYDNAAAV----AKKAHKEGTTLKDAALK-----LGVLNSEEFDNLVVPEKMIG 494 (497)
Q Consensus 440 ~l~t~La~~-----ig~~~A~~i----a~~a~~~g~~l~e~~~~-----~~~l~~~el~~~ldp~~~~g 494 (497)
+++|+||++ ++|++||++ ++.|.++|+++.++..+ ...++ +++.++|||+..+.
T Consensus 2 ~~ATdlAD~LVr~GipFR~AH~iVg~~V~~a~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~~~~V~ 69 (70)
T PF14698_consen 2 STATDLADYLVRKGIPFREAHHIVGRLVRLAEEEGKPLSELTLEELQEISPEFE-EDVREALDPEASVE 69 (70)
T ss_dssp GGHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTTS-GGGS-HHHHHHH-TT---GGGGGGSSHHHHHT
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHhHHhH-HHHHHHCCHHHHhc
Confidence 467777664 689999975 56778899988776543 24454 89999999998774
No 51
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=93.85 E-value=0.22 Score=43.21 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=51.2
Q ss_pred ccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHHh----hCccccHHHHHHHHHHHHHc
Q 010908 389 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS----LNPKIGYDNAAAVAKKAHKE 464 (497)
Q Consensus 389 ~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~----La~~ig~~~A~~ia~~a~~~ 464 (497)
|+++.....+.+|+=-.+....-+..++. +-+..|.||+++|.+.|+.+|....+ +-.+.|++.+++..|+..+
T Consensus 3 ~QRDLtDSTvlRNiGva~~~sliA~~s~l-kGl~Kl~vn~~~l~~dL~~nWeVlaEpIQTvmRr~g~~~pYE~LK~lTR- 80 (115)
T PF08328_consen 3 WQRDLTDSTVLRNIGVAFGHSLIAYKSLL-KGLGKLEVNEERLAEDLDENWEVLAEPIQTVMRRYGIPNPYEKLKELTR- 80 (115)
T ss_dssp TTB-THHHHHHTTHHHHHHHHHHHHHHHH-HHHHTEEE-HHHHHHHHCT-GGGGHHHHHHHHHHTT-SSHHHHHHHHHT-
T ss_pred ccccchHHHHHHhhhHHHHHHHHHHHHHH-HHHhcccCCHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCHHHHHHHHHc-
Confidence 34444433333333333322233333342 46677899999999999999986432 2235688888888876554
Q ss_pred CCC-----HHHHHHHcCCCCHHHHhhc--cCccccc
Q 010908 465 GTT-----LKDAALKLGVLNSEEFDNL--VVPEKMI 493 (497)
Q Consensus 465 g~~-----l~e~~~~~~~l~~~el~~~--ldp~~~~ 493 (497)
|+. +++.+.... ++++.-+++ +.|.+|+
T Consensus 81 g~~it~~~l~~fI~~L~-ip~~~k~~L~~ltP~~Y~ 115 (115)
T PF08328_consen 81 GKKITKEDLREFIESLD-IPEEAKARLLALTPATYI 115 (115)
T ss_dssp TS---HHHHHHHHHTSS-S-HHHHHHHHH--CCC--
T ss_pred CCCCCHHHHHHHHHhCC-CCHHHHHHHHhcCccccC
Confidence 443 222222223 676654444 5788775
No 52
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=87.21 E-value=14 Score=39.50 Aligned_cols=31 Identities=16% Similarity=-0.009 Sum_probs=26.5
Q ss_pred HHHccCcccccccccccCcCCchhhhHHHHHH
Q 010908 208 SVEFKDIVKIGRTHTQDATPLTLGQEFSGYTT 239 (497)
Q Consensus 208 A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~ 239 (497)
++++.=+++.-+| +|.+.|.+.+.+.+..+.
T Consensus 224 ~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~ 254 (481)
T KOG2700|consen 224 TKELGFVPMYIVT-GQTYSRKTDAEEVAPLAS 254 (481)
T ss_pred HHHhCCCcccccc-CCcCCchhHHHHHHHHHH
Confidence 4788889999999 999999999998776654
No 53
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=59.15 E-value=37 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 010908 78 PIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (497)
Q Consensus 78 ~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~ 115 (497)
.+...++..+++..--..+.| |+++.|++|.+..++-.
T Consensus 11 ~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~ 49 (59)
T PF10925_consen 11 ALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQ 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 567788889999999999999 99999999999988654
No 54
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=21.01 E-value=88 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=14.8
Q ss_pred HHHH-HcCCCHHHHHHHHHHHH
Q 010908 92 KVNM-EYGLDPAIGKAIMQAAQ 112 (497)
Q Consensus 92 ~a~~-~~Gi~~~~a~~I~~a~~ 112 (497)
+++. +.|||+.+|+.|++.|.
T Consensus 13 ~~L~~~f~ip~~vAk~IV~~C~ 34 (40)
T PF02022_consen 13 KALRHKFGIPRLVAKQIVNQCP 34 (40)
T ss_dssp HHHHHHHT--HHHHHHHHHHSC
T ss_pred HHHHHHHccCHHHHHHHHHHCH
Confidence 3344 77899999999999874
Done!