Query 010908
Match_columns 497
No_of_seqs 231 out of 1749
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gtd_A Fumarase C, fumarate hy 100.0 3E-125 1E-129 999.6 44.3 460 33-494 21-482 (482)
2 3e04_A Fumarase, fumarate hydr 100.0 3E-125 9E-130 1000.7 41.3 461 36-496 29-490 (490)
3 4hgv_A Fumarase C, fumarate hy 100.0 1E-121 4E-126 980.1 43.9 462 33-496 32-495 (495)
4 3ocf_A Fumarate lyase:delta cr 100.0 3E-121 9E-126 971.7 42.8 454 37-492 23-478 (478)
5 3r6q_A Aspartase; aspartate am 100.0 3E-120 1E-124 964.1 43.1 457 36-495 4-462 (468)
6 4adm_A Fumarase C, fumarate hy 100.0 9E-119 3E-123 955.8 42.9 456 33-496 28-489 (495)
7 1yfm_A Fumarase, YFUM; lyase, 100.0 6E-118 2E-122 949.7 44.2 459 36-496 27-488 (488)
8 1fur_A Fumarase C, FUMC; hydro 100.0 4E-115 1E-119 926.6 46.3 457 37-496 4-463 (467)
9 1jsw_A L-aspartase, L-aspartat 100.0 9E-114 3E-118 919.2 44.2 457 36-496 4-466 (478)
10 1vdk_A Fumarase C, fumarate hy 100.0 8E-114 3E-118 917.1 40.3 459 37-496 3-463 (466)
11 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 2.1E-85 7.1E-90 697.2 31.7 409 50-495 5-433 (450)
12 3c8t_A Fumarate lyase; structu 100.0 1.6E-84 5.5E-89 690.3 36.4 406 50-495 7-431 (451)
13 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 1.8E-84 6.2E-89 690.7 34.5 412 50-495 7-437 (454)
14 1c3c_A Protein (adenylosuccina 100.0 7.7E-84 2.6E-88 681.4 35.0 397 54-495 3-419 (429)
15 2pfm_A Adenylosuccinate lyase; 100.0 2.6E-83 9E-88 679.4 37.8 399 53-495 12-431 (444)
16 2e9f_A Argininosuccinate lyase 100.0 1.5E-84 5.1E-89 691.7 28.3 410 51-495 2-436 (462)
17 1k7w_A Delta 2 crystallin; eye 100.0 4.5E-84 1.6E-88 689.0 28.1 411 49-495 5-438 (468)
18 1tj7_A Argininosuccinate lyase 100.0 4.7E-82 1.6E-86 671.6 29.8 409 53-494 2-432 (457)
19 1dof_A Adenylosuccinate lyase; 100.0 3.2E-80 1.1E-84 648.3 35.1 377 50-475 5-397 (403)
20 2ptr_A Adenylosuccinate lyase; 100.0 1.6E-80 5.4E-85 661.1 23.6 413 50-495 11-447 (462)
21 4eei_A Adenylosuccinate lyase; 100.0 1.3E-74 4.4E-79 610.8 30.5 397 53-495 3-421 (438)
22 1yis_A Adenylosuccinate lyase; 100.0 2E-74 6.9E-79 616.8 29.7 411 47-495 7-446 (478)
23 2j91_A Adenylosuccinate lyase; 100.0 1E-73 3.4E-78 613.5 32.4 418 40-495 28-474 (503)
24 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 5.3E-72 1.8E-76 577.3 26.3 342 53-434 13-355 (359)
25 2qga_B Adenylosuccinate lyase; 100.0 5.8E-69 2E-73 572.6 21.4 407 50-495 10-449 (465)
26 3bhg_A Adenylosuccinate lyase; 100.0 8.8E-68 3E-72 562.7 29.3 405 50-495 14-450 (459)
27 1fgl_B HIV-1 GAG protein; cycl 20.6 32 0.0011 21.1 0.8 14 219-232 2-15 (26)
No 1
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=3e-125 Score=999.56 Aligned_cols=460 Identities=63% Similarity=0.973 Sum_probs=444.4
Q ss_pred ccccccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Q 010908 33 YSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAA 111 (497)
Q Consensus 33 ~~~~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~ 111 (497)
.|.++|+|+|++|+++||.|+|||.||+|+++||+|||. ++|+++|++|+.||+|+|.+|.++| ||++.+++|.++|
T Consensus 21 ~~~~~r~e~d~~g~~~vp~~~~~g~qt~Ra~~nf~i~~~--~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~ 98 (482)
T 3gtd_A 21 SMKNYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQ--KMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAI 98 (482)
T ss_dssp ---CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCCSC--BCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccccCcCccccCCCccCCcccccCHHHHHHHHhccccCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344699999999999999999999999999999999997 6899999999999999999999999 9999999999999
Q ss_pred HHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHH
Q 010908 112 QEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETN 190 (497)
Q Consensus 112 ~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~ 190 (497)
++|.+++++++||+++||+|+||++|||+||||+|+++|++|++.|+|. ||||||||+||||||++||+++|++++++.
T Consensus 99 ~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~ 178 (482)
T 3gtd_A 99 DRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATK 178 (482)
T ss_dssp HHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998889875 899999999999999999999999988875
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCC
Q 010908 191 SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN 270 (497)
Q Consensus 191 ~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~ 270 (497)
+.|.+.|..|+++|.+||++|++++|+||||+|||+|+||||||++|+++|.|+++||++++++++.+||||||||||++
T Consensus 179 ~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~ 258 (482)
T 3gtd_A 179 QQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGIN 258 (482)
T ss_dssp HTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCC
Q 010908 271 TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG 350 (497)
Q Consensus 271 ~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~G 350 (497)
++++|++++.+++++.|||++++.+|++|++++||++++++++|+.++++|+|||+|||+|+||||+|||||.+|+.++|
T Consensus 259 ~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~G 338 (482)
T 3gtd_A 259 SKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEPG 338 (482)
T ss_dssp SCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC
T ss_pred CCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECCCCCCC
Confidence 99999999999999999999978899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHH
Q 010908 351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430 (497)
Q Consensus 351 SSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~er 430 (497)
|||||||+||+.+|.++++|++|+|+++++++++..|+||+|+++|+++|++|++++++.+++..|+.+|++||+||++|
T Consensus 339 SSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~er 418 (482)
T 3gtd_A 339 SSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIAR 418 (482)
T ss_dssp CSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccC
Q 010908 431 ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 494 (497)
Q Consensus 431 m~~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g 494 (497)
|+++++++++++|+|++++||+.|++++++|.++|++|+|++.+.++|+++||+++|||++|+|
T Consensus 419 m~~~l~~s~~lvTaLa~~iGy~~a~~ia~~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~~~g 482 (482)
T 3gtd_A 419 INTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMIS 482 (482)
T ss_dssp HHHHHHHCGGGHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHHSCC----
T ss_pred HHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 2
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.6e-125 Score=1000.67 Aligned_cols=461 Identities=72% Similarity=1.110 Sum_probs=445.2
Q ss_pred cccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 010908 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVA 115 (497)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gi~~~~a~~I~~a~~ev~ 115 (497)
.+|+|+|++|+++||.|+|||.||+|+++||+|||...++|+.+|++++.||+|+|.+|.++|||++.+++|.++|++|.
T Consensus 29 ~~r~e~D~~G~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~~~Gl~~~~a~aI~~a~~ev~ 108 (490)
T 3e04_A 29 SFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVA 108 (490)
T ss_dssp CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGGGGTCCHHHHHHHHHHHHHHH
T ss_pred CCCcccccCcCccCcchhhhhHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999756789999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHHH
Q 010908 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (497)
Q Consensus 116 ~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~ 194 (497)
++++.++||+++||+|+||++|||+||||+|+++|++|++.|+|. ||||||||+||||||++||+++|++++++.+.|.
T Consensus 109 ~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~ 188 (490)
T 3e04_A 109 EGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLL 188 (490)
T ss_dssp TTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cCCcccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998899885 8999999999999999999999999888766899
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCC
Q 010908 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (497)
Q Consensus 195 ~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (497)
+.|..|+++|.+||++|++++||||||+|||+|+||||||++|+++|.|+++||++++++++.+||||||||||++++++
T Consensus 189 ~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~~~ 268 (490)
T 3e04_A 189 PGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIG 268 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTTTSSCTTSCTT
T ss_pred HHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCC
Q 010908 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (497)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiM 354 (497)
|+.++.+++++.|||++++.+|++|++++||++++++++|+.++++|+|||+|||+|+||||+|||||.+|+.++|||||
T Consensus 269 ~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~GSSiM 348 (490)
T 3e04_A 269 FAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSIM 348 (490)
T ss_dssp HHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC----
T ss_pred HHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEECCCCCCCCCCC
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (497)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 434 (497)
|||+||+.+|.++++|++|+|+++++++++.+|+||+|+++|++.+++|++++++.+++..|+.+|++||+||++||+++
T Consensus 349 P~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~~g~~eln~~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~ 428 (490)
T 3e04_A 349 PGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKL 428 (490)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 435 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 435 l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
++++++++|+|++++||+.|++++++|.++|++|+|++.+.++|+++||+++|||++|+||+
T Consensus 429 l~~s~~lvTaLa~~iGy~~a~~iak~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~~~g~~ 490 (490)
T 3e04_A 429 MNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 490 (490)
T ss_dssp HHHCSGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHHHHTSCCHHHHHHHCCGGGSSCC-
T ss_pred HhhchHHHHHhhhHHHHHHHHHHHHHHHHHCCCHHHHHHHcCCCCHHHHHHHcCHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 3
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.1e-121 Score=980.12 Aligned_cols=462 Identities=65% Similarity=0.982 Sum_probs=445.3
Q ss_pred ccccccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Q 010908 33 YSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAA 111 (497)
Q Consensus 33 ~~~~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~ 111 (497)
.|+++|+|+|++|+++||.++|||.||+|+++||+||+. ++|+++|++++.||+|+|++|.++| ||++.+++|.+||
T Consensus 32 ~m~~~r~e~d~~g~~~vp~~~~~g~qt~ra~~nf~i~~~--~~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A~ 109 (495)
T 4hgv_A 32 TMTSTRTETDTFGPIEVASDRYWGAQAQRSLGNFKIGWE--KQPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAA 109 (495)
T ss_dssp ---CEEEEEETTEEEEEETTCCCCHHHHHHHHHCCCCSC--BCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCeeeecCCCCccCCCccchHHHHHHHHHccCCCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456799999999999999999999999999999999987 7899999999999999999999999 9999999999999
Q ss_pred HHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHH
Q 010908 112 QEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETN 190 (497)
Q Consensus 112 ~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~ 190 (497)
+||.+|+++++||+++||+|+||++|||+||||+|++.|++|++.|.|. +|||||||+||||||++|||++|++++++.
T Consensus 110 ~ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~ 189 (495)
T 4hgv_A 110 QEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVI 189 (495)
T ss_dssp HHHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchhhccchhhhhhccccccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888876 999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCC
Q 010908 191 SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN 270 (497)
Q Consensus 191 ~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~ 270 (497)
+.|++.|..|+++|.+||++|++++|+||||+|||+|+||||||++|+++|.|+++||+.+++++..+++||||+|||++
T Consensus 190 ~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAvGtg~~ 269 (495)
T 4hgv_A 190 HDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGLN 269 (495)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCC
Q 010908 271 TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG 350 (497)
Q Consensus 271 ~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~G 350 (497)
++++|+..+.+++++.+||++.+.+|+++|+++||++++++++|+.++++|+|||+|||+|+|+|++||+|+.+|++++|
T Consensus 270 ~~~~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~p~~q~G 349 (495)
T 4hgv_A 270 APVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSLPENEPG 349 (495)
T ss_dssp SCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC
T ss_pred CchhHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEEecCcCCcc
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHH
Q 010908 351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430 (497)
Q Consensus 351 SSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~er 430 (497)
|||||||+||+.+|.++++|++|+|+++++.++...+++|+|.+.|.+.|++|++++.+.+++..|+.+|++||+||++|
T Consensus 350 SSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~er 429 (495)
T 4hgv_A 350 SSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDN 429 (495)
T ss_dssp C-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHH
T ss_pred cccCccccChHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 431 ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 431 m~~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
|+++++.+++++|+|++++||++|++++++|.++|++|+|++.+.+.|+++||+++|||++|+||.
T Consensus 430 m~~~l~~s~~lvtaL~~~iGy~~A~~iak~A~~~g~~lre~~~~~~~ls~eeld~lldP~~~~gpA 495 (495)
T 4hgv_A 430 IKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETMIGPA 495 (495)
T ss_dssp HHHHHHHCSGGGGGTHHHHCHHHHHHHHHHHHHHTCCHHHHHHTTTSSCHHHHHHHCCGGGSSSCC
T ss_pred HHHHHhcChhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHhCCHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999983
No 4
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=2.6e-121 Score=971.72 Aligned_cols=454 Identities=40% Similarity=0.636 Sum_probs=430.2
Q ss_pred ccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 010908 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (497)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~ 115 (497)
+|+|+|++|+++||.|+|||+||+|+++||+||+...+.++++|++|+.||+|+|.+|.++| ||++++++|.++|++|.
T Consensus 23 ~r~e~d~~g~~~vp~~~~yG~qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a~~ei~ 102 (478)
T 3ocf_A 23 TRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDII 102 (478)
T ss_dssp CEEEEETTEEEEECTTCSSCHHHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCccCCcccccCHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999997433348999999999999999999999 99999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHHH
Q 010908 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (497)
Q Consensus 116 ~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~ 194 (497)
++++.++|++++||+|+||++|||+||||++++.|++|++.|+|. ||||||||+||||||++||+++|++++.+ ..|.
T Consensus 103 ~g~~~~~f~~~~~q~g~gt~~nmnvnevia~~a~e~~G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~l-~~L~ 181 (478)
T 3ocf_A 103 DGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQ-NQVQ 181 (478)
T ss_dssp TTTTGGGCCCBTTCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHTH-HHHH
T ss_pred cCccccCCCcchhhccCCccccchHHHHHHHHHHHHhchhcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999998888875 99999999999999999999999998775 7999
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCC
Q 010908 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (497)
Q Consensus 195 ~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (497)
+.|..|+++|.+||++|++++||||||+|||+|+||||||++|+++|.|+++||++++++++.+||||||||||+|++++
T Consensus 182 ~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~~~ 261 (478)
T 3ocf_A 182 TALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHA 261 (478)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC-----------C
T ss_pred HHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCeeeCCCcCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCC
Q 010908 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (497)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiM 354 (497)
|.+.+.+++++.|||++.+++|++|++++||++++++++|+.++++|+|||+|||+|+||||+|||||.+|+.++|||||
T Consensus 262 ~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~q~GSSiM 341 (478)
T 3ocf_A 262 YAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIM 341 (478)
T ss_dssp HHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCCEECCCCSCCBTTB
T ss_pred HHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeEEECCCCCCcCCCC
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (497)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 434 (497)
|||+||+++|.++++|++|+|++++++++..+|+||+|+++|++.++++++++++.+++..|+..|++||+||++||+++
T Consensus 342 P~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~~g~leln~~~p~i~~~l~~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~ 421 (478)
T 3ocf_A 342 PGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAG 421 (478)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred CcccCcHHHHHHHHHHHHHHhHHHHHHHHHhcCcchhcccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccc
Q 010908 435 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 492 (497)
Q Consensus 435 l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~ 492 (497)
++.+++++|+|++++||+.|++++++|.++|++|+|++.+.++ ++++|+++|||++|
T Consensus 422 l~~s~~lvtaLa~~igy~~a~~ia~~A~~~g~~l~e~~~~~~~-s~eel~~~ldp~~m 478 (478)
T 3ocf_A 422 AEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGL-DASALTIMLDPLRM 478 (478)
T ss_dssp HHTCGGGGGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTC-CCHHHHHHTCSCC-
T ss_pred HHhCccHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCC-CHHHHHHhcCcccC
Confidence 9999999999999999999999999999999999999999998 99999999999975
No 5
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=2.8e-120 Score=964.10 Aligned_cols=457 Identities=42% Similarity=0.705 Sum_probs=445.6
Q ss_pred cccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 010908 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV 114 (497)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev 114 (497)
.+|+|+|++|+++||.|+|||.||+|+++||+||+. ++|+++|++|+.||+|+|.+|.++| ||++++++|.++|++|
T Consensus 4 ~~r~e~d~~g~~~vp~~~~yg~qt~ra~~nf~i~~~--~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~~i 81 (468)
T 3r6q_A 4 DVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGY--RIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEV 81 (468)
T ss_dssp -CEEEEETTEEEEECTTCCCCHHHHHHHHHCCSSCC--CCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCccccCCCccCCcccccCHHHHHHHHccccCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999987 7899999999999999999999999 9999999999999999
Q ss_pred HccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHHH
Q 010908 115 AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193 (497)
Q Consensus 115 ~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L 193 (497)
.++++.++|+++++|+|+||++|||+||||++++.|++|++.|+|. ||||||||+||||||++||+++|++++.+ ..|
T Consensus 82 ~~~~~~~~f~~~~~~~g~gt~~nmnvnevia~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l-~~l 160 (468)
T 3r6q_A 82 IEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLL-NQL 160 (468)
T ss_dssp HTTTTGGGCCSCSSCSSTTHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHH-HHH
T ss_pred HhCccccCCCccHHhccccccccccHHHHHHHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999998888864 99999999999999999999999998775 699
Q ss_pred HHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC
Q 010908 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273 (497)
Q Consensus 194 ~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~ 273 (497)
.+.|..|+++|.+||++|++++||||||+|||+|+||||||++|+++|.|+++||++++++++.+||||||+||++|+++
T Consensus 161 ~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~~ 240 (468)
T 3r6q_A 161 IETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADP 240 (468)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeecCCCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCC
Q 010908 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSI 353 (497)
Q Consensus 274 ~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSi 353 (497)
+|...+.+++++.|||++++.+|+++|+++||++++++++|+.++++|+|||+|||+|+||||+|||||.+|+.++||||
T Consensus 241 ~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GSSi 320 (468)
T 3r6q_A 241 EYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSI 320 (468)
T ss_dssp HHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEECCCCSCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEECCCCCCCCCC
Confidence 99999999999999999877899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHH
Q 010908 354 MPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433 (497)
Q Consensus 354 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~ 433 (497)
||||+||+.+|.++++|++|+|++++++++..+|+||+|+++|++.+++++++..+.+++..|.++|++||+||++||++
T Consensus 321 MP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~ 400 (468)
T 3r6q_A 321 MPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE 400 (468)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999987899999999999999
Q ss_pred HhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCC
Q 010908 434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 434 ~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~ 495 (497)
+++.+++++|+|++++||+.|++++++|.++|++|+|++.+.+.|++++|+++|||++|++|
T Consensus 401 ~l~~s~~l~t~La~~lgy~~a~~ia~~a~~~g~~l~e~~~~~~~ls~eel~~~ldp~~~~~~ 462 (468)
T 3r6q_A 401 YVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462 (468)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHTSSCHHHHHHHSCHHHHTSC
T ss_pred HHHcCCchHHhcchhhHHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 6
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=9.2e-119 Score=955.77 Aligned_cols=456 Identities=52% Similarity=0.803 Sum_probs=431.8
Q ss_pred ccccccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Q 010908 33 YSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAA 111 (497)
Q Consensus 33 ~~~~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~ 111 (497)
++..+|+|+|++|+++||.++|||+||+|+++||++|++ ++|+++|++|+.||+|+|.+|.++| ||++++++|.++|
T Consensus 28 ~~~~~r~e~d~~g~~~vp~~~~~G~~t~r~~~~F~is~~--~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~ 105 (495)
T 4adm_A 28 DSANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGR--GLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAAA 105 (495)
T ss_dssp ---CEEEEEETTEEEEEETTCSCCHHHHHHHHHCCSSSC--BCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred hhcccCCccCcCCCccCChhhhcCchhHHHHHhcCCCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345689999999999999999999999999999999997 7899999999999999999999999 9999999999999
Q ss_pred HHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHH
Q 010908 112 QEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS 191 (497)
Q Consensus 112 ~ev~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~ 191 (497)
++|.+++.+++|+++++|+|+||++|||+||||++++ ++| |+| ||||||||+||||||++||+++|++++.+.+
T Consensus 106 ~ei~~~~~~~~f~~~~~q~g~gt~~nmnvnevia~ra--~lG---G~~-vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~ 179 (495)
T 4adm_A 106 AEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIA--AKG---GVT-LHPNDDVNMSQSSNDTFPTATHIAATEAAVA 179 (495)
T ss_dssp HHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHH--HHT---TCC-CCTTTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCCcchhhccccccccccHHHHHHHHH--HhC---CCc-cCcccccCCCCChhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999977 577 788 9999999999999999999999999877645
Q ss_pred HHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCC
Q 010908 192 RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271 (497)
Q Consensus 192 ~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~ 271 (497)
.|.+.|..|+++|.+||++|++++||||||+|||||+||||||++|+++|.|+++||++++++++.+||||||+|||+|+
T Consensus 180 ~l~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAvGT~~~~ 259 (495)
T 4adm_A 180 HLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNA 259 (495)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeecCCccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCC-CCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCC
Q 010908 272 KKGFDVKIASAVAEETSL-PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG 350 (497)
Q Consensus 272 ~~~~~~~v~~~la~~LGl-~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~G 350 (497)
+++|++.+.+++++.||| ++.+.+|+++|+++||++++++++|+.++++|+|||+|||+|+||||+|||||.+|+.++|
T Consensus 260 ~~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~lp~~q~G 339 (495)
T 4adm_A 260 PDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPG 339 (495)
T ss_dssp CTTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEECCCC---
T ss_pred ChhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEECCCCCCC
Confidence 999999999999999999 7778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHH
Q 010908 351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430 (497)
Q Consensus 351 SSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~er 430 (497)
|||||||+||+++|.++++|++|+|++++++++..+|+||+|+++|++.++++++++++.+++..|+.+|++||+||++|
T Consensus 340 SSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~er 419 (495)
T 4adm_A 340 SSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEH 419 (495)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987999999999999
Q ss_pred HHHHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCC----CCHHHHhhccCcccccCCC
Q 010908 431 ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 431 m~~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~----l~~~el~~~ldp~~~~g~~ 496 (497)
|+++++.+++++|+|++++||+.|++++++|.++|++|+|++.+++. |+++||+++|||++|+||.
T Consensus 420 m~~~l~~s~~l~t~La~~igy~~a~~ia~~a~~~g~~l~e~~~~~~~~~~~ls~eel~~~ldp~~~~~~~ 489 (495)
T 4adm_A 420 LRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAE 489 (495)
T ss_dssp HHHHHHHCGGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHHHTTCCBTTBCHHHHHHHTCHHHHTTCC
T ss_pred HHHHHhccccHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHhCcccccCCCHHHHHHHcCHHHhcCCc
Confidence 99999999999999999999999999999999999999999999876 9999999999999999985
No 7
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=6.3e-118 Score=949.68 Aligned_cols=459 Identities=70% Similarity=1.050 Sum_probs=437.7
Q ss_pred cccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 010908 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV 114 (497)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev 114 (497)
.+|+|+|++|+++||.++|||+||+|+++||++|+..+++|+++|++|+.||+|+|.+|.++| ||++++++|.++|++|
T Consensus 27 ~~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a~~ei 106 (488)
T 1yfm_A 27 SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEV 106 (488)
T ss_dssp CEEEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccCcccccCCCcCCCccchhchHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999986446899999999999999999999999 9999999999999999
Q ss_pred HccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCC-CccccCccccCCCCChhcHHHHHHHHHHHHHHHH-H
Q 010908 115 AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-R 192 (497)
Q Consensus 115 ~~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g-~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~-~ 192 (497)
.+++..++|+++++|+|+|||+|||+||||++++.|++|++.| ++ ||||||||+||||||++||+++|++++.+ . .
T Consensus 107 ~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~-vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l-~~~ 184 (488)
T 1yfm_A 107 ASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQ-VHPNNHCNQSQSSNDTFPTVMHIAASLQI-QNE 184 (488)
T ss_dssp HHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC----------CCCCCCCTTTCCHHHHHHHHHHHHHHHHH-HTT
T ss_pred HhcccccCCCcchhhccccccccccHHHHHHHHHHHHhCccccCCc-cCcccCcCCCCChhhHHHHHHHHHHHHHH-HHH
Confidence 9998899999999999999999999999999999999997777 77 99999999999999999999999998764 5 8
Q ss_pred HHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCC
Q 010908 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272 (497)
Q Consensus 193 L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~ 272 (497)
|++.|..|+++|.+||++|++++||||||+|||+|+||||||++|+++|.|+++||++++++++.+||||||+|||+|++
T Consensus 185 l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~ 264 (488)
T 1yfm_A 185 LIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTK 264 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCC
Q 010908 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSS 352 (497)
Q Consensus 273 ~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSS 352 (497)
++|..++.+++|+.|||++.+.+|++|++++||++++++++|+.++++|+|||+|||+|+||||+|||||.+|++++|||
T Consensus 265 ~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GSS 344 (488)
T 1yfm_A 265 PGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSS 344 (488)
T ss_dssp TTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCT
T ss_pred hhHHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEECCCCCCcCC
Confidence 99999999999999999987899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHH
Q 010908 353 IMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 432 (497)
Q Consensus 353 iMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~ 432 (497)
|||||+||+.+|.++++|++|+|++++++.+..+|++|+|+++|++.+++++++..+.+++..|..+|++||+||++||+
T Consensus 345 iMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~ 424 (488)
T 1yfm_A 345 IMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIH 424 (488)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHH
T ss_pred CcccccCcHHHHHHHHHHHHHHhHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999998789999999999999
Q ss_pred HHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 433 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 433 ~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
++++.+++++|+|++++||+.|++++++|.++|++|+|++.+.+.++++||+++|||++|+||+
T Consensus 425 ~~l~~s~~l~t~La~~lg~~~a~~i~~~a~~~g~~l~e~~~~~~~l~~eel~~~ldp~~~~~~~ 488 (488)
T 1yfm_A 425 ELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGPK 488 (488)
T ss_dssp HHHHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHCCGGGCC---
T ss_pred HHHccCchHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHhcCHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999974
No 8
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=4e-115 Score=926.59 Aligned_cols=457 Identities=61% Similarity=0.951 Sum_probs=441.6
Q ss_pred ccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 010908 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (497)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~ 115 (497)
+|+|+|++|+++||.++|||++|+|+++||++|+. ++++++|++|++||+|+|.+|.++| ||++++++|.++|++|.
T Consensus 4 ~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~--~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~ 81 (467)
T 1fur_A 4 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTE--KMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVL 81 (467)
T ss_dssp CEEEEETTEEEEECTTCCCCHHHHHHHHHCCCSSC--BCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred cCccccCCCCccCCcccccchhhHHHHHhccCCCc--cCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999986 5799999999999999999999999 99999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCcc-ccCccccCCCCChhcHHHHHHHHHHHHHHHHH-H
Q 010908 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR-L 193 (497)
Q Consensus 116 ~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~-vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~-L 193 (497)
+++..++|+++++|+|+||++|||+|+||++++.|++|++.|+|. +|||||||+||||||++||+++|++++.+ .. |
T Consensus 82 ~~~~~~~f~~~~~q~g~~~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l-~~~l 160 (467)
T 1fur_A 82 AGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLAL-RKQL 160 (467)
T ss_dssp TTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHH-HHTH
T ss_pred hccccccccchhhhccccccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHHHHHHHHHH-HHHH
Confidence 998889999999999999999999999999999999997888765 99999999999999999999999998775 56 9
Q ss_pred HHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC
Q 010908 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 273 (497)
Q Consensus 194 ~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~ 273 (497)
.+.|..|+++|.+||++|++++||||||+||||||||||||++|+++|.|+++||++++++++.+||||||+||++++++
T Consensus 161 ~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAvGT~~~~~~ 240 (467)
T 1fur_A 161 IPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHP 240 (467)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhcCCccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCC
Q 010908 274 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSI 353 (497)
Q Consensus 274 ~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSi 353 (497)
+|++.+.+++|+.|||++.+.+|++||+++||++++++++|+.++++|+|||+|||+|+|+||||||||.+|++++||||
T Consensus 241 ~~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSi 320 (467)
T 1fur_A 241 EYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSI 320 (467)
T ss_dssp THHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEECCCCSCCCTT
T ss_pred hHHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCCCCCC
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHH
Q 010908 354 MPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433 (497)
Q Consensus 354 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~ 433 (497)
||||+||+.+|.++++|++|+|++.+++.+...+|+|+|.+.|.+.++++++++.+.+++..|+.+|++||+||++||++
T Consensus 321 MP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~ 400 (467)
T 1fur_A 321 MPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQ 400 (467)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999987899999999999999
Q ss_pred HhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 434 ~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
+++.+++++|+|++++||+.+++++++|.++|++|+|++.+.+.+++++++++|||++|+|++
T Consensus 401 ~l~~~~~l~t~La~~lg~~~a~~~~~~a~~~g~~l~e~~~~~~~l~~~e~~~~ldp~~~~~~~ 463 (467)
T 1fur_A 401 LLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGSM 463 (467)
T ss_dssp HHHHCSTTHHHHHTTSCHHHHHHHHHHHHHHTCCHHHHHHHTTSSCHHHHHHHCCGGGC----
T ss_pred HHHhCccHHHHhHhhccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHHHhcCHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999999999999974
No 9
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=9.1e-114 Score=919.16 Aligned_cols=457 Identities=39% Similarity=0.651 Sum_probs=437.8
Q ss_pred cccccccCCCcccccccCccChHhHHHhhcCccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 010908 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERM--PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQ 112 (497)
Q Consensus 36 ~~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~--~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ 112 (497)
.+|+|+|++|+++||.|+|||++|+|+++||++|+. ++ |+++|++++.||+|+|.+|.++| ||++++++|.++|+
T Consensus 4 ~~r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~--~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a~~ 81 (478)
T 1jsw_A 4 NIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNN--KISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACD 81 (478)
T ss_dssp SEEEEECSSCEEEEESSCCCCHHHHHHHHHCCSCSC--CSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CcCcccccCCCcCCCCccccchHHHHHHHhCCCcCc--cccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999999999999999975 66 89999999999999999999999 99999999999999
Q ss_pred HHH-ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCC--ccccCccccCCCCChhcHHHHHHHHHHHHHH
Q 010908 113 EVA-EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE--KIVHPNDHVNRSQSSNDTFPTVMHIAAAMET 189 (497)
Q Consensus 113 ev~-~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~--~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~ 189 (497)
+|. +++..++|++++||+|+||++|||+||||++++.|++|++.|+ + +|||||||+||||||++||+++|++++.+
T Consensus 82 ~i~~~~~~~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~-lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l 160 (478)
T 1jsw_A 82 EVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQY-LNPNDHVNKCQSTNDAYPTGFRIAVYSSL 160 (478)
T ss_dssp HHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCS-SCCCCCCSCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhccCCccchhhccCcccccccHHHHHHHHHHHHcCcccccccc-ccccccccCCCChhhHHHHHHHHHHHHHH
Confidence 999 9988999999999999999999999999999999999977786 5 99999999999999999999999998775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCC
Q 010908 190 NSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269 (497)
Q Consensus 190 ~~~L~~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~ 269 (497)
..|.+.|..|+++|.+||++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||||+||++
T Consensus 161 -~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~AvGT~~ 239 (478)
T 1jsw_A 161 -IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGL 239 (478)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSSSCS
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCC
Q 010908 270 NTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP 349 (497)
Q Consensus 270 ~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~ 349 (497)
+++++|+..+.+++++.|||++.+.+|++|++++||++++++++|+.++++|+|||+||++|+|+||+|||||.+|+.++
T Consensus 240 ~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~lp~~~~ 319 (478)
T 1jsw_A 240 NTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQA 319 (478)
T ss_dssp SCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCCCSC
T ss_pred cCCcchHHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCC
Confidence 99999999999999999999987899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHH
Q 010908 350 GSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 429 (497)
Q Consensus 350 GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~e 429 (497)
||||||||+||+.+|.++++|++|+|++.+++.....+++|+|++.|++.+++++++..+.+++..|..+|++||+||++
T Consensus 320 GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~~~~~p~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~e 399 (478)
T 1jsw_A 320 GSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKE 399 (478)
T ss_dssp CCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHHhHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCeecHH
Confidence 99999999999999999999999999999998888899999999999999999999999999999997689999999999
Q ss_pred HHHHHhhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 430 RISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 430 rm~~~l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
||+++++.+++++|+|++++||+.|++++++|.++|++|+|++.+.+.+++++++++|||++|+|++
T Consensus 400 rm~~~l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~~~~~~l~~~~~~~~ldp~~~~~~~ 466 (478)
T 1jsw_A 400 VCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466 (478)
T ss_dssp HHHHHHTTCTTCGGGTHHHHCHHHHHHHHHHHHTTCCCHHHHHHHHTSSCSHHHHTSCCC-------
T ss_pred HHHHHHHhCchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHHhcCCCCHHHHHHhCCHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999973
No 10
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=7.6e-114 Score=917.11 Aligned_cols=459 Identities=57% Similarity=0.870 Sum_probs=440.6
Q ss_pred ccccccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 010908 37 FREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA 115 (497)
Q Consensus 37 ~r~e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~ 115 (497)
+|+|+|++|+++||.++|||++|+|+++||++|+.+.++|++++++|++||+|+|.+|.++| ||++++++|.++|++|.
T Consensus 3 ~r~e~d~~g~~~vp~~~~~g~~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~ 82 (466)
T 1vdk_A 3 YRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVV 82 (466)
T ss_dssp -CEEEETTEEEECCTTCCCCHHHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcCCCcccccchhhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999976222289999999999999999999999 99999999999999999
Q ss_pred ccccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCC-CccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHH
Q 010908 116 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 194 (497)
Q Consensus 116 ~~~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g-~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~ 194 (497)
+++..++|+++++|+|++|++|||+|+||++++.|++|++.| ++ +|||||||+||||||++||+++|++++.+.+.|.
T Consensus 83 ~~~~~~~f~~~~~q~~~~~~~~mn~~~via~~a~e~~g~~~g~~~-lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~ 161 (466)
T 1vdk_A 83 QGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKY-AHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLY 161 (466)
T ss_dssp TTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCS-SCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hcccccCCCchhhhccccccccccHHHHHHHHHHHHhCccccccc-cccccCcCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 998889999999999999999999999999999999997788 78 9999999999999999999999999876523899
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCC
Q 010908 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274 (497)
Q Consensus 195 ~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~ 274 (497)
+.|..|+++|.+||++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||||+||+++++++
T Consensus 162 ~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~ 241 (466)
T 1vdk_A 162 PAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPR 241 (466)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSCTT
T ss_pred HHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCC
Q 010908 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 354 (497)
Q Consensus 275 ~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiM 354 (497)
|.+++.+++++.|||++.+.+|++|++++||++++++++|+.++++|+|||+||++|+||||+|||||.+|++++|||||
T Consensus 242 ~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSiM 321 (466)
T 1vdk_A 242 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIM 321 (466)
T ss_dssp HHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCCSCCSSCC
T ss_pred HHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEECCCCCCcCCCC
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (497)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 434 (497)
|||+||+.+|.++++|++|+|++.+++.+..+|++|+|.++|++.+++++++..+.+++..|+.+|++||+||++||+++
T Consensus 322 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~ 401 (466)
T 1vdk_A 322 PGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEY 401 (466)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999878999999999999999
Q ss_pred hhhhHhHHHhhCccccHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHhhccCcccccCCC
Q 010908 435 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496 (497)
Q Consensus 435 l~~s~~l~t~La~~ig~~~A~~ia~~a~~~g~~l~e~~~~~~~l~~~el~~~ldp~~~~g~~ 496 (497)
++.+++++|+|++++||+.+++++++|.++|++|+|++.+.+.+++++++++|||++|++|+
T Consensus 402 l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~~~~~~l~~~~~~~~ldp~~~~~~~ 463 (466)
T 1vdk_A 402 LQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 463 (466)
T ss_dssp HTTCGGGGHHHHHHHCSHHHHTTTTTSCC--CCHHHHHHHTSSSCHHHHHHHCCHHHHHCCC
T ss_pred HHhcchHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHhcCCCCHHHHHHHcCHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 11
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=2.1e-85 Score=697.21 Aligned_cols=409 Identities=22% Similarity=0.261 Sum_probs=361.3
Q ss_pred cccCccCh-HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccc
Q 010908 50 PSDKLWGA-QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVV 127 (497)
Q Consensus 50 p~~~~~g~-~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~ 127 (497)
|.+ +|+. +.++.+ |+ +++++++|++||+|+|.+|.++| ||++++++|.++|++ ++|+++.
T Consensus 5 ~~~-ry~~~~~~~~i--~s--------~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~-------~~f~~~~ 66 (450)
T 1re5_A 5 LFD-AYFTAPAMREI--FS--------DRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQA-------ERYDTGA 66 (450)
T ss_dssp TTH-HHHSCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCG-------GGSCHHH
T ss_pred chh-hccCCHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhc-------CCCCHHH
Confidence 556 6655 999999 74 78999999999999999999999 999999999999865 3478888
Q ss_pred cccCcccccccchHHHHHHHH--HHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 128 WQTGSGTQSNMNANEVIANRA--AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLH 205 (497)
Q Consensus 128 ~q~g~g~~~~~n~nevi~~~~--~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~ 205 (497)
++++.++ +.||||+++. .+++|... . .||+|||+||||||++||+++|++++.+ ..|.+.|..|+++|.
T Consensus 67 ~~~~~~~----~~~dV~a~~~~l~e~~g~~~--~--~~~~~vh~g~SsnD~~~Ta~~l~lr~~l-~~l~~~l~~L~~~L~ 137 (450)
T 1re5_A 67 LANAIAT----AGNSAIPLVKALGKVIATGV--P--EAERYVHLGATSQDAMDTGLVLQLRDAL-DLIEADLGKLADTLS 137 (450)
T ss_dssp HHHHHHH----HSSSHHHHHHHHHHHHHHHC--G--GGGGGTTTTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhc----cCccHHHHHHHHHHHhCCCC--C--cccccccCCCChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8877654 4678887754 58887310 1 1588888999999999999999998775 699999999999999
Q ss_pred HHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHH
Q 010908 206 SKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAE 285 (497)
Q Consensus 206 ~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~ 285 (497)
+||++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+|||++++++ +..+.+++++
T Consensus 138 ~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGG-AvGt~~~~~~~-~~~~~~~la~ 215 (450)
T 1re5_A 138 QQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGG-ASGSLAALGSK-AMPVAEALAE 215 (450)
T ss_dssp HHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TTSSCGGGGGG-HHHHHHHHHH
T ss_pred HHHHHccCCeeeccccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-hhcCCcccCcc-hHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 89999999887 8899999999
Q ss_pred HcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHH
Q 010908 286 ETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQC 363 (497)
Q Consensus 286 ~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~ 363 (497)
.|||+.++.+ ++++||++++++++|+.++++|+|||+||++|+ ++|||||.+|. +++||||||||+||+.+
T Consensus 216 ~LG~~~~~~~----~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~---~~e~~El~~p~~~~q~GSSiMP~K~NP~~~ 288 (450)
T 1re5_A 216 QLKLTLPEQP----WHTQRDRLVEFASVLGLVAGSLGKFGRDISLLM---QTEAGEVFEPSAPGKGGSSTMPHKRNPVGA 288 (450)
T ss_dssp HHTCBCCSSC----CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCCEECCCCC----------CCCCHHH
T ss_pred HhCcCCCCcc----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcceeecccccCCCccccCCCCcCCHHH
Confidence 9999996554 589999999999999999999999999999999 67999999996 69999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHH-
Q 010908 364 EALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV- 442 (497)
Q Consensus 364 E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~- 442 (497)
|.++++|++|+|++.+++.+.. +++|+|.+.|.+.|++++++..+.+++..+..+|++||+||++||+++++.+.+++
T Consensus 289 E~i~~~a~~v~g~~~~~~~~~~-~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~ 367 (450)
T 1re5_A 289 AVLIGAATRVPGLLSTLFAAMP-QEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVL 367 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-CCTTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCh-hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcChhH
Confidence 9999999999999999987654 59999999999999999999999999999999999999999999999998777655
Q ss_pred -----HhhCccccHHHHH----HHHHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 443 -----TSLNPKIGYDNAA----AVAKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 443 -----t~La~~ig~~~A~----~ia~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
+.|++.+||++|| +++++|.++|++|+|++.++ +.|+++++++++||++|+|+
T Consensus 368 Ae~l~~~L~~gig~~~A~~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 433 (450)
T 1re5_A 368 AEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQ 433 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHTCHHHHHHSCHHHHHHHTCGGGCCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhccCCCHHHHHHhcCHHHHhhh
Confidence 7788899988887 56778889999999999987 78999999999999999987
No 12
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=1.6e-84 Score=690.27 Aligned_cols=406 Identities=20% Similarity=0.230 Sum_probs=355.6
Q ss_pred cccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccc
Q 010908 50 PSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVW 128 (497)
Q Consensus 50 p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~ 128 (497)
|.+.+|+.+.++.+ |+ ++.++++|++||+|+|.+|.++| ||++++++|.++|++ ++|+++.+
T Consensus 7 ~~~~ry~~~~~~~~--~s--------d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~-------~~~~~~~~ 69 (451)
T 3c8t_A 7 LYGRSFADDKMREL--FS--------AQSFISRCVETEVALARAQARLGIIPEDAAAGITAAART-------FAPEMERL 69 (451)
T ss_dssp CSSCCCSCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-------CCCCHHHH
T ss_pred ccccccCcHHHHHH--cC--------CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhh-------cCCCHHHH
Confidence 55568888999999 74 78999999999999999999999 999999999999986 45778888
Q ss_pred ccCcccccccchHHHHHHHH--HHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 129 QTGSGTQSNMNANEVIANRA--AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206 (497)
Q Consensus 129 q~g~g~~~~~n~nevi~~~~--~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~ 206 (497)
+++.++ |.||||+++. .+++| +.|++ || +||||||++||+++|++++.+ ..|.+.|..|+++|.+
T Consensus 70 ~~~~~~----~~~dVia~~~~l~e~~g-~~g~~-vH------~g~SsnDv~~Ta~~L~lr~~l-~~l~~~l~~L~~~L~~ 136 (451)
T 3c8t_A 70 RDDTEI----VGYPILPLVEQLSAHAG-EAGKY-LH------WGATTQDIMDTATVLQIRDGL-ALISRRIESVRKALAA 136 (451)
T ss_dssp HHHHHH----HSSSHHHHHHHHHHHHG-GGGGG-SS------SSCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhhc----CCCcHHHHHHHHHHHcc-ccccc-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 877655 6788888755 68998 45777 88 699999999999999998775 6999999999999999
Q ss_pred HHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHH
Q 010908 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286 (497)
Q Consensus 207 ~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~ 286 (497)
||++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+|||+++++ |++.+.+++++.
T Consensus 137 ~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGT~~~~~~-~~~~~~~~~a~~ 214 (451)
T 3c8t_A 137 LARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSG-ASGTLASLGT-RGLDVQRELARE 214 (451)
T ss_dssp HHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCC-TTSSCGGGTT-CHHHHHHHHHHH
T ss_pred HHHHccCceeecccCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hhhcCccccc-ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 8999999877 899999999999
Q ss_pred cCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHH
Q 010908 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCE 364 (497)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E 364 (497)
|||+.++.+| +.+||++++++++|+.++++|+|||+||++|+ ++|||||.+|. +|+||||||||+||+.+|
T Consensus 215 LGl~~~~~~~----~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E 287 (451)
T 3c8t_A 215 LNLGVPSITW----HSARDAVAETVQFLALVSGSLGKLAMDISIMM---TTELGEVAEPFVRHRGASSTMPQKQNPVSCE 287 (451)
T ss_dssp HTCBCCSSCC----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCCEECC---------------CCHHHH
T ss_pred hCCCCCCCCC----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccccccccccccCCCCCCCCCCCcCCHHHH
Confidence 9999976665 45999999999999999999999999999999 67999999996 699999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHH--
Q 010908 365 ALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV-- 442 (497)
Q Consensus 365 ~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~-- 442 (497)
.++++|++|+|++++++.+ ..+++|++...|.+.+++++++..+.+.+..+..+|++||+||++||+++++.+.+++
T Consensus 288 ~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a 366 (451)
T 3c8t_A 288 LILAGARIVRNHATSMLDA-MIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVA 366 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTGGGH
T ss_pred HHHHHHHHHHHHHHHHHhc-CchhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccChHHH
Confidence 9999999999999998764 5679999999998888888666666666666678999999999999999998776654
Q ss_pred ----HhhCccccHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 443 ----TSLNPKIGYDNAAAVA----KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 443 ----t~La~~ig~~~A~~ia----~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
+.|++++||++||+++ ++|.++|++|+|++.++ +.|+++++++++||++|+|+
T Consensus 367 e~l~~~L~~~ig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 431 (451)
T 3c8t_A 367 EAVMMALAPHTGRKEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGS 431 (451)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCHHHHHTTCHHHHHHHCHHHHHHHTCGGGCCTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCHHHHHhcChhhhccCCHHHHHHhCCHHHHhch
Confidence 7888899999999855 78889999999999987 67899999999999999997
No 13
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=1.8e-84 Score=690.71 Aligned_cols=412 Identities=21% Similarity=0.258 Sum_probs=356.9
Q ss_pred cccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccc
Q 010908 50 PSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVW 128 (497)
Q Consensus 50 p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~ 128 (497)
|.+.+|+.+.++.+ |+ ++.++++|++||+|+|.+|.++| ||++++++|.++|++|. ++|+++.+
T Consensus 7 ~~~~ry~~~~~~~~--~s--------d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~-----~~~~~~~~ 71 (454)
T 1q5n_A 7 LYASLFYQRDVTEI--FS--------DRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAI-----DKIDFDAL 71 (454)
T ss_dssp TTHHHHSCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHH-----HHCCHHHH
T ss_pred ccccccCcHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh-----hcCCHHHH
Confidence 33447888899999 74 78999999999999999999999 99999999999999875 34667788
Q ss_pred ccCcccccccchHHHHHHHH--HHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 129 QTGSGTQSNMNANEVIANRA--AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206 (497)
Q Consensus 129 q~g~g~~~~~n~nevi~~~~--~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~ 206 (497)
+++.++ |.||||+++. .+++|...| .+++|||+||||||++||+++|++++.+ ..|.+.|..|+++|.+
T Consensus 72 ~~~~~~----~~~dVia~~~~l~e~~g~~~g----~~~~~vH~g~SsnD~~~Ta~~L~~r~~l-~~l~~~l~~L~~~L~~ 142 (454)
T 1q5n_A 72 ATATGL----AGNIAIPFVKQLTAIVKDADE----DAARYVHWGATSQDILDTACILQCRDAL-AIVQNQVQQCYETALS 142 (454)
T ss_dssp HHHHHH----HSSSHHHHHHHHHHHHHTTCT----TGGGGTTTTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhhc----cCCcHHHHHHHHHHHhccccC----CccccccCCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 876655 6788888755 688852111 1245566899999999999999998775 6999999999999999
Q ss_pred HHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHH
Q 010908 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286 (497)
Q Consensus 207 ~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~ 286 (497)
||++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+|||| |+|||+++++ |++.+.+++++.
T Consensus 143 ~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGT~~~~~~-~~~~~~~~~a~~ 220 (454)
T 1q5n_A 143 QAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGG-AVGSLASLQD-QGSIVVEAYAKQ 220 (454)
T ss_dssp HHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TTSSCGGGTT-CHHHHHHHHHHH
T ss_pred HHHHhcCceeeccccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-HhhcCccccc-ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 8999999876 899999999999
Q ss_pred cCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHH
Q 010908 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCE 364 (497)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E 364 (497)
|||+.++.+| +.+||++++++++|+.++++|+|||+||++|+ ++|||||.+|. +|+||||||||+||+.+|
T Consensus 221 LG~~~~~~~~----~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E 293 (454)
T 1q5n_A 221 LKLGQTACTW----HGERDRIVEIASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRNPVAAA 293 (454)
T ss_dssp HTCBCCSSCC----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCCEECCC-------------CCCHHHH
T ss_pred hCcCCCCCCC----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchhccccccCCCCCccCCCCCCCHHHH
Confidence 9999976665 45999999999999999999999999999999 67999999996 699999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHH--
Q 010908 365 ALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV-- 442 (497)
Q Consensus 365 ~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~-- 442 (497)
.++++|++|+|++++++.+ ..+++|+|...|.+.+++++++..+.+.+..+..+|++||+||++||+++++.+.+++
T Consensus 294 ~i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a 372 (454)
T 1q5n_A 294 SVLAAANRVPALMSSIYQS-MVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMA 372 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGH
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChhHH
Confidence 9999999999999998764 5679999999998888888776666666666678999999999999999998776654
Q ss_pred ----HhhCccccHHHHHHHH----HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 443 ----TSLNPKIGYDNAAAVA----KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 443 ----t~La~~ig~~~A~~ia----~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
+.|++++||++||+++ ++|.++|++|+|++.+. +.++++++++++||++|+|+
T Consensus 373 e~l~~~L~~~ig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~g~ 437 (454)
T 1q5n_A 373 EAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGN 437 (454)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTCCHHHHHTTCHHHHTTCCHHHHHHHTCGGGGCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHHhcchhhhcCCCHHHHHHhCCHHHHcCc
Confidence 7888899999999854 78889999999999987 88999999999999999997
No 14
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=7.7e-84 Score=681.37 Aligned_cols=397 Identities=20% Similarity=0.223 Sum_probs=355.9
Q ss_pred ccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCc
Q 010908 54 LWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGS 132 (497)
Q Consensus 54 ~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g~ 132 (497)
+|+.+.++.+ |+ +++++++|++||+|+|.+|.++| ||++.+++|.++| +|+++.++++.
T Consensus 3 ry~~~~~~~~--~s--------d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~----------~~d~~~i~~~~ 62 (429)
T 1c3c_A 3 RYSLSPMKDL--WT--------EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNA----------KIDVELFKKIE 62 (429)
T ss_dssp GGCCTTHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHC----------CCCHHHHHHHH
T ss_pred CcccHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC----------CCCHHHHHHHH
Confidence 6778899999 74 88999999999999999999999 9999999999987 35677777665
Q ss_pred ccccccchHHHHHHHH--HHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 133 GTQSNMNANEVIANRA--AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210 (497)
Q Consensus 133 g~~~~~n~nevi~~~~--~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~ 210 (497)
++ |.||||+++. .+++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.+||++
T Consensus 63 ~~----~~~dVia~~~~l~e~~g-~~g~~-vH------~g~SsnD~~~Ta~~l~lr~~~-~~l~~~l~~l~~~L~~~A~~ 129 (429)
T 1c3c_A 63 EK----TNHDVVAFVEGIGSMIG-EDSRF-FH------YGLTSSDVLDTANSLALVEAG-KILLESLKEFCDVLWEVANR 129 (429)
T ss_dssp HH----HCCHHHHHHHHHHHHHG-GGGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hc----cCCChHHHHHHHHHHcC-ccccc-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 54 5789998855 79998 45777 78 699999999999999998775 69999999999999999999
Q ss_pred ccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCC
Q 010908 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP 290 (497)
Q Consensus 211 ~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~ 290 (497)
|++++||||||+|||+||||||||++|+++|.|+++||.+++++++.+|||| |+|||.+++ ..+.+++++.|||+
T Consensus 130 ~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGt~~~~~----~~~~~~~a~~LGl~ 204 (429)
T 1c3c_A 130 YKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVP----PEVEEKALSYLGLK 204 (429)
T ss_dssp TTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TTSSCSSSC----HHHHHHHHHHTTCE
T ss_pred hcCCeeecCcCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch-hhcCCccCC----HHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999 899998865 47889999999999
Q ss_pred CCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHHHHHH
Q 010908 291 FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTM 368 (497)
Q Consensus 291 ~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i~~ 368 (497)
.++.+ |++.+||++++++++|+.++++|+|||+||++|+ ++||||+.+|. +|+||||||||+||+.+|.+++
T Consensus 205 ~~~~~---d~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~---~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~ 278 (429)
T 1c3c_A 205 PEPVS---TQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTG 278 (429)
T ss_dssp ECSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCSEECCCCC-----CCCTTCCCCHHHHHHHH
T ss_pred CCCCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchhccccccCCCcCCCCCCCCCcHHHHHHHH
Confidence 86554 5567999999999999999999999999999999 67999999996 6999999999999999999999
Q ss_pred HHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHH------
Q 010908 369 VCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV------ 442 (497)
Q Consensus 369 ~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~------ 442 (497)
+|++|+|++.+++.+. .+++|+|.+.|.+.+++++++..+.+.+..+..+|++||+||++||+++++.+.+++
T Consensus 279 ~a~~v~g~~~~~~~~~-~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~a~~la 357 (429)
T 1c3c_A 279 LSRMMRAYVDPSLENI-ALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVL 357 (429)
T ss_dssp HHHHHHHTHHHHHHTT-CCSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChHHHHHHH
Confidence 9999999999987754 589999999999999999877777777777778999999999999999998777654
Q ss_pred HhhCcc-ccHHHHHH----HHHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 443 TSLNPK-IGYDNAAA----VAKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 443 t~La~~-ig~~~A~~----ia~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
+.|+++ +||++||+ ++++|.++|++|+|++.++ +.++++++++++||++|+|+
T Consensus 358 ~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 419 (429)
T 1c3c_A 358 LKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKH 419 (429)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTSSSCHHHHHHTCHHHHTTCCHHHHHHTTCTHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhCChhhhccCCHHHHHHhCCHHHHhhh
Confidence 788887 99999995 4778889999999999987 88999999999999999986
No 15
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=2.6e-83 Score=679.38 Aligned_cols=399 Identities=19% Similarity=0.178 Sum_probs=360.6
Q ss_pred CccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccC
Q 010908 53 KLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 131 (497)
Q Consensus 53 ~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g 131 (497)
.+|-.+.++++ |+ +++++++|++||+|+|.+|.++| ||++++++|.++| +|+++.++++
T Consensus 12 ~~~~~~~~~~i--~s--------d~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~----------~~d~~~i~~~ 71 (444)
T 2pfm_A 12 SRYTRPEMGAI--WT--------EENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHA----------SFDIDRIYEI 71 (444)
T ss_dssp CTTCCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHC----------CCCHHHHHHH
T ss_pred HhcchHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC----------CCCHHHHHHH
Confidence 36777889999 74 88999999999999999999999 9999999999987 3567777766
Q ss_pred cccccccchHHHHHHHH--HHHhC-ccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 132 SGTQSNMNANEVIANRA--AEILG-HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKS 208 (497)
Q Consensus 132 ~g~~~~~n~nevi~~~~--~e~lg-~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A 208 (497)
.++ |.||||+++. .+++| ++.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.+||
T Consensus 72 ~~~----~~~dVia~~~~l~e~~g~g~~g~~-vH------~g~SsnDv~~Ta~~L~lr~~l-~~l~~~l~~L~~~L~~~A 139 (444)
T 2pfm_A 72 EKE----TRHDVVAFTRAVSETPALGEERKW-VH------YGLTSTDVVDTALSYILKQAN-EIILKDLENFVSILANKA 139 (444)
T ss_dssp HHH----HCCHHHHHHHHHHTCTTCCGGGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hcc----CCCCHHHHHHHHHHHcCCCccccc-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 554 6789998855 78885 466777 77 699999999999999998775 699999999999999999
Q ss_pred HHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcC
Q 010908 209 VEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETS 288 (497)
Q Consensus 209 ~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LG 288 (497)
++|++++||||||+||||||||||||++|+++|.|+++||..++++++.+|||| |+|||++++ ..+.+++++.||
T Consensus 140 ~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGt~~~~~----~~~~~~~a~~LG 214 (444)
T 2pfm_A 140 KEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSG-AVGTYANID----PFVEKYVCENLG 214 (444)
T ss_dssp HHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TTSSCTTSC----HHHHHHHHHHTT
T ss_pred HHhcCCeeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCch-hhccCCcCC----HHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999 899998865 478899999999
Q ss_pred CCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCC--CCCCCCCCCCCCChhHHHHH
Q 010908 289 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEAL 366 (497)
Q Consensus 289 l~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~--~~~GSSiMP~K~NP~~~E~i 366 (497)
|+.++.+ |++.+||++++++++|+.++++|+|||+||++|+ ++||||+.+|. +|+||||||||+||+.+|.+
T Consensus 215 l~~~~~~---d~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i 288 (444)
T 2pfm_A 215 LEAAPIS---TQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQ---KSETREVEEAFAKGQKGSSAMPHKRNPIGSENM 288 (444)
T ss_dssp CEECSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCSEECCCCTTCCSCSSCTTCCCCHHHHHH
T ss_pred CCCCCCC---cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccccccccccCCCcCccCCcccCCHHHHHH
Confidence 9986554 5567999999999999999999999999999999 67999999996 69999999999999999999
Q ss_pred HHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHH----
Q 010908 367 TMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV---- 442 (497)
Q Consensus 367 ~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~---- 442 (497)
+++|++|+|++.++..+. .+++|+|...|.+.|++++++..+.+.+..+..+|++||+||++||+++++.+.+++
T Consensus 289 ~~~a~~v~g~~~~~~~~~-~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~ 367 (444)
T 2pfm_A 289 TGLARVIRGYMMTAYENV-PLWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQR 367 (444)
T ss_dssp HHHHHHHHHHHHHHHHTS-CCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHhC-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHHHH
Confidence 999999999999987764 689999999999999999777777777777778999999999999999998777654
Q ss_pred --HhhCcc-ccHHHHHH----HHHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 010908 443 --TSLNPK-IGYDNAAA----VAKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 443 --t~La~~-ig~~~A~~----ia~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldp~~~~g~ 495 (497)
+.|+++ +||++||+ ++++|.++|++|+|++.++ +.|++++++++|||++|+|+
T Consensus 368 la~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 431 (444)
T 2pfm_A 368 VMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQH 431 (444)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCHHHHHHTCHHHHTTSCHHHHHHHTCGGGGGTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHCCCHHHHHhcchhhhccCCHHHHHHhCCHHHHHhH
Confidence 788887 99999995 5778889999999999987 88999999999999999986
No 16
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-84 Score=691.67 Aligned_cols=410 Identities=23% Similarity=0.303 Sum_probs=362.9
Q ss_pred ccCccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcc
Q 010908 51 SDKLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPL 125 (497)
Q Consensus 51 ~~~~~g~----~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~ 125 (497)
.++|||+ +|.|+++||++|+ ++|..++++.+.+|+|+|.+|.++| ||++++++|.++|++|.++...++|++
T Consensus 2 ~~~~~g~r~~~~t~~~~~~f~~s~---~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~ 78 (462)
T 2e9f_A 2 AHRTWGGRFGEGPDALAARFNASL---AFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPW 78 (462)
T ss_dssp ------------CCSHHHHHHCCH---HHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred CccccCCccchhhHHHHHhccCCC---ccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcccCCc
Confidence 4689999 9999999999886 4678999999999999999999999 999999999999999998877889998
Q ss_pred cccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 126 VVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLH 205 (497)
Q Consensus 126 ~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~ 205 (497)
++ +++++|||+ ++++.|++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.
T Consensus 79 ~~----~~~dv~~~~----~~~l~e~~g-~~g~~-vH------~g~SsnDv~~Ta~~l~lr~~l-~~l~~~l~~L~~~L~ 141 (462)
T 2e9f_A 79 RE----ELEDVHMNL----EARLTELVG-PPGGK-LH------TARSRNDQVATDLRLYLRGAI-DELLALLLALRRVLV 141 (462)
T ss_dssp CG----GGCSHHHHH----HHHHHHHHC-TTHHH-HT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CC----CCCchHHHH----HHHHHHHcc-ccccc-ee------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 76 478888884 688899998 67777 88 599999999999999998775 699999999999999
Q ss_pred HHHHHccCc--ccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHH
Q 010908 206 SKSVEFKDI--VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASA 282 (497)
Q Consensus 206 ~~A~~~~~~--~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~ 282 (497)
++|++|+++ +||||||+||||||||||||++|+++|.|+++||..++++++.+||||||+ ||+++.++ +.
T Consensus 142 ~~A~~~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~-------~~ 214 (462)
T 2e9f_A 142 REAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDR-------HF 214 (462)
T ss_dssp HHHHHTTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCSSCCCH-------HH
T ss_pred HHHHHccCcCccccCcccCccCeeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCCCCCCH-------HH
Confidence 999999999 999999999999999999999999999999999999999999999999888 99998887 46
Q ss_pred HHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCC-CCCCCCCCCCChh
Q 010908 283 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE-PGSSIMPGKVNPT 361 (497)
Q Consensus 283 la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~-~GSSiMP~K~NP~ 361 (497)
+++.|||+. +..|.+|++++||++++++++|+.++++|+|||+||++|+|+| ||||++|+.+ +||||||||+||+
T Consensus 215 ~a~~LG~~~-~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~e---~g~iel~e~~~~GSSiMP~K~NP~ 290 (462)
T 2e9f_A 215 TARELGFKA-PMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEE---FGFVEVPDAFATGSSIMPQKKNPD 290 (462)
T ss_dssp HHHHTTCSE-ECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---TCCEECCGGGCEECSSSSSCEECH
T ss_pred HHHHhCCCC-CCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcEEecCCCCCCCCCCCCCcCCH
Confidence 999999995 7899999999999999999999999999999999999999874 9999999985 5999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhccc--ccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhH
Q 010908 362 QCEALTMVCAQVIGNHVAITVGGSN--GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESL 439 (497)
Q Consensus 362 ~~E~i~~~a~~v~g~~~~~~~~~~~--g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~ 439 (497)
.+|.++++|++|+|++.+++++..+ .+++++.... -..+++++..+..++..|. .+++||+||++||+++++.++
T Consensus 291 ~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~--~~~l~~s~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~~~~ 367 (462)
T 2e9f_A 291 ILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQED--KEPLLDALATYRDSLRLLA-ALLPGLKWRRERMWRAAEGGY 367 (462)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTTCCSSBCGGGGGG--HHHHHHHHHHHHHHHHHHH-HHGGGCEECHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhchhhh--HhHHHHHHHHHHHHHHHHH-HHhCcCEECHHHHHHHHhcCc
Confidence 9999999999999999999864432 2444433321 1258899999999999997 599999999999999999999
Q ss_pred hHHHhhCccc---------cHHHHHHHHHHHHHcCCCHHHHHHHc-----CCCCHHHHhhccCcccccCC
Q 010908 440 MLVTSLNPKI---------GYDNAAAVAKKAHKEGTTLKDAALKL-----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 440 ~l~t~La~~i---------g~~~A~~ia~~a~~~g~~l~e~~~~~-----~~l~~~el~~~ldp~~~~g~ 495 (497)
+++|+|++++ +|+.+.+++++|.++|++|+|++.++ +.++ +++++++||++|+..
T Consensus 368 ~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~l~-~~l~~~ldp~~~~~~ 436 (462)
T 2e9f_A 368 TLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFA-EDALPLLRLETAIHR 436 (462)
T ss_dssp TTHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHCTTCC-GGGGGGGSHHHHTTS
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhH-HHHHHhCCHHHHHhc
Confidence 9999999877 66666678889999999999987776 7887 789999999999953
No 17
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=4.5e-84 Score=688.95 Aligned_cols=411 Identities=19% Similarity=0.238 Sum_probs=361.0
Q ss_pred ccccCccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCC
Q 010908 49 VPSDKLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHF 123 (497)
Q Consensus 49 ~p~~~~~g~----~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f 123 (497)
-|.+++||+ ++.|.+++|++|+ ++|+.++++++.+|+|+|.+|.++| ||++++++|.++|++|.++...++|
T Consensus 5 ~~~~~~~~~r~~~~~~~~~~~f~~s~---~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f 81 (468)
T 1k7w_A 5 ARGDKLWGGRFSGSTDPIMEKLNSSI---AYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVF 81 (468)
T ss_dssp --------------CCHHHHHHHCCH---HHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcccccccccchhHHHHHHHccCCC---cccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcccC
Confidence 356678877 9999999999886 4688999999999999999999999 9999999999999999988778889
Q ss_pred cccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 124 PLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNS 203 (497)
Q Consensus 124 ~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~ 203 (497)
++++ +++++||| +++++.+++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++
T Consensus 82 ~~~~----~~~dv~m~----~~~~l~e~~g-~~g~~-vH------~g~SsnDv~~Ta~~l~lr~~l-~~l~~~L~~L~~~ 144 (468)
T 1k7w_A 82 VVKQ----SDEDIHTA----NERRLKELIG-DIAGK-LH------TGRSRNDQVVTDLKLFMKNSL-SIISTHLLQLIKT 144 (468)
T ss_dssp CCCT----TCCSHHHH----HHHHHHHHHC-GGGGG-GG------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ccCC----CCCchHHH----HHHHHHHHcc-ccccc-ee------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9876 47888888 4788999999 67777 88 599999999999999998775 6999999999999
Q ss_pred HHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHH
Q 010908 204 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASA 282 (497)
Q Consensus 204 L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~ 282 (497)
|.++|++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||||+ ||+++.++ ++
T Consensus 145 L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~-------~~ 217 (468)
T 1k7w_A 145 LVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDR-------EM 217 (468)
T ss_dssp HHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCTTCCCH-------HH
T ss_pred HHHHHHHccCCEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCCCCh-------HH
Confidence 99999999999999999999999999999999999999999999999999999999999988 99998887 56
Q ss_pred HHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCC-CCCCCCCCCCChh
Q 010908 283 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE-PGSSIMPGKVNPT 361 (497)
Q Consensus 283 la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~-~GSSiMP~K~NP~ 361 (497)
+++.|||+. +..|++|++++||++++++++|+.++++|+|||+||++|+|+| ||||++|+.. +||||||||+||+
T Consensus 218 la~~LG~~~-~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~s~e---~g~iel~e~~~~GSSiMP~K~NP~ 293 (468)
T 1k7w_A 218 LRSELEFAS-ISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGASLMPQKKNPD 293 (468)
T ss_dssp HHHHHTCSE-ECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---TCCEECCGGGCEEETTEEEEEECH
T ss_pred HHHHcCCCC-CCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCceeccCCCCCCCCCCCCCCCcH
Confidence 999999995 7899999999999999999999999999999999999999874 9999999985 5999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhccc--ccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhH
Q 010908 362 QCEALTMVCAQVIGNHVAITVGGSN--GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESL 439 (497)
Q Consensus 362 ~~E~i~~~a~~v~g~~~~~~~~~~~--g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~ 439 (497)
.+|.++++|++|+|++.+++++..+ .+++++.... -.++++++..+..++..|. .|++||+||++||+++++.+
T Consensus 294 ~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~--~~~l~~s~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~~~- 369 (468)
T 1k7w_A 294 SLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQED--KEAVFDVVDTLTAVLQVAT-GVISTLQISKENMEKALTPE- 369 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGGGH--HHHHHHHHHHHHHHHHHHH-HHHHHCEECHHHHHHTCCGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhhhhhh--HhHHHHHHHHHHHHHHHHH-HHhCCCEECHHHHHHHhhCC-
Confidence 9999999999999999999865433 2444433321 1258899999999999997 59999999999999999999
Q ss_pred hHHHhhCccc---------cHHHHHHHHHHHHHcCCCHHHHHHHc-----CCCCHHHHhhccCcccccCC
Q 010908 440 MLVTSLNPKI---------GYDNAAAVAKKAHKEGTTLKDAALKL-----GVLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 440 ~l~t~La~~i---------g~~~A~~ia~~a~~~g~~l~e~~~~~-----~~l~~~el~~~ldp~~~~g~ 495 (497)
+++|.|++++ +|+.+.+++++|.++|++|+|++.++ +.|+ +++++++||+.|+..
T Consensus 370 ~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~l~-~~~~~~ldp~~~~~~ 438 (468)
T 1k7w_A 370 MLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFS-SDVSQVFNFVNSVEQ 438 (468)
T ss_dssp GGHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHTTTCCGGGCCHHHHHHHCTTCC-GGGGGGSCHHHHHTT
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhH-HHHHHhCCHHHHHhc
Confidence 9999988876 56666677888899999999987776 7887 789999999999953
No 18
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=4.7e-82 Score=671.61 Aligned_cols=409 Identities=19% Similarity=0.248 Sum_probs=360.9
Q ss_pred CccCh----HhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccc
Q 010908 53 KLWGA----QTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVV 127 (497)
Q Consensus 53 ~~~g~----~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~ 127 (497)
++||+ ++.+.+++|+.|.. .|..++++.+.+++|+|.+|.++| ||++++++|.++|++|.++...++|++++
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~---~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~ 78 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLR---FDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILE 78 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHH---HHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGG
T ss_pred cccccccccchHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCC
Confidence 36666 89999999987754 467899999999999999999999 99999999999999998777778898875
Q ss_pred cccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 128 WQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSK 207 (497)
Q Consensus 128 ~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~ 207 (497)
+ +++++|||+| +++.+++| +.|+| || +||||||++||+++|++++.+ ..|.+.|..|+++|.++
T Consensus 79 ~---~~~dv~~~v~----~~l~e~~g-~~g~~-vH------~g~SsnD~~~Ta~~l~lr~~l-~~l~~~l~~l~~~L~~~ 142 (457)
T 1tj7_A 79 S---DAEDIHSWVE----GKLIDKVG-QLGKK-LH------TGRSRNDQVATDLKLWCKDTV-SELLTANRQLQSALVET 142 (457)
T ss_dssp S---CCSSHHHHHH----HHHHHHHG-GGGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred C---CCCcHHHHHH----HHHHHHcc-ccccc-ee------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3 6899999854 78889998 56777 88 599999999999999998775 69999999999999999
Q ss_pred HHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCcccc-ccCCCCCCCchHHHHHHHHHH
Q 010908 208 SVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEE 286 (497)
Q Consensus 208 A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~ 286 (497)
|++|++++||||||+||||||||||||++|+++|.|+++||.+++++++.+||||||+ ||++++++ +++++.
T Consensus 143 A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~-------~~la~~ 215 (457)
T 1tj7_A 143 AQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDR-------EQLAGW 215 (457)
T ss_dssp HHTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCH-------HHHHHH
T ss_pred HHHccCCeeeccccCcCCeechHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCCH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 99999887 469999
Q ss_pred cCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCC-CCCCCCCCCCChhHHHH
Q 010908 287 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE-PGSSIMPGKVNPTQCEA 365 (497)
Q Consensus 287 LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~-~GSSiMP~K~NP~~~E~ 365 (497)
|||+. +..|++|++++||++++++++|+.++++|+|||+||++|+|+| ||||++|+.+ +||||||||+||+.+|.
T Consensus 216 LGl~~-~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~e---~g~iel~e~~~~GSSiMP~K~NP~~~E~ 291 (457)
T 1tj7_A 216 LGFAS-ATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGE---AGFVELSDRVTSGSSLMPQKKNPDALEL 291 (457)
T ss_dssp HTCSS-BCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---TCCEECCGGGCBCCTTCTTCCBCHHHHH
T ss_pred cCCCC-CCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCceeccCCCCCCCCCCCCCCCcHHHHH
Confidence 99996 7899999999999999999999999999999999999999874 9999999875 79999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhccc--ccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHH
Q 010908 366 LTMVCAQVIGNHVAITVGGSN--GHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT 443 (497)
Q Consensus 366 i~~~a~~v~g~~~~~~~~~~~--g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t 443 (497)
++++|++|+|++.+++++..+ .+++++...- -..+++++..+..++..|. .|++||+||++||++++..+++++|
T Consensus 292 i~~~a~~v~g~~~~~~~~~~~~p~~~~RDl~~~--~~~l~~s~~~~~~~l~~~~-~~l~gl~vn~~~m~~~l~~~~~~at 368 (457)
T 1tj7_A 292 IRGKCGRVQGALTGMMMTLKGLPLAYNKDMQED--KEGLFDALDTWLDCLHMAA-LVLDGIQVKRPRCQEAAQQGYANAT 368 (457)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTCCSSCCGGGGGH--HHHHHHHHHHHHHHHHHHH-HHHTTCEECHHHHHHHHTSTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHhhcchhhH--HhHHHHHHHHHHHHHHHHH-HHHccCEECHHHHHHHHhcCCchHH
Confidence 999999999999999665433 2444433221 1248889999999999997 4999999999999999999999999
Q ss_pred hhCccc---c------HHHHHHHHHHHHHcCCCHHHHHHHc-CC---CCHHHHhhccCcccccC
Q 010908 444 SLNPKI---G------YDNAAAVAKKAHKEGTTLKDAALKL-GV---LNSEEFDNLVVPEKMIG 494 (497)
Q Consensus 444 ~La~~i---g------~~~A~~ia~~a~~~g~~l~e~~~~~-~~---l~~~el~~~ldp~~~~g 494 (497)
.|++++ | |+.+.+++++|.++|++|+|++.++ .. +.++++++++||++++.
T Consensus 369 ~l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 432 (457)
T 1tj7_A 369 ELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLD 432 (457)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTCTTCCTTHHHHTSHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhhhcHHHHHHhCCHHHHHh
Confidence 988876 6 5555567788889999999987765 31 34678999999999983
No 19
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=3.2e-80 Score=648.33 Aligned_cols=377 Identities=21% Similarity=0.248 Sum_probs=325.5
Q ss_pred cccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCccccc
Q 010908 50 PSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVW 128 (497)
Q Consensus 50 p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~ 128 (497)
|.+.+|+.+.++.+ |+ +++++++|++||+|+|.+|.++| ||++++++|.++ +|+++.+
T Consensus 5 p~~~ry~~~~~~~i--~s--------d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----------~~d~~~~ 63 (403)
T 1dof_A 5 PFDWRYGSEEIRRL--FT--------NEAIINAYLEVERALVCALEELGVAERGCCEKVNKA-----------SVSADEV 63 (403)
T ss_dssp GGGTTSSCHHHHTT--SS--------HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHC-----------CCCTTTC
T ss_pred CcccccCcHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-----------CCCHHHH
Confidence 56778888999999 74 88999999999999999999999 999999999877 4678888
Q ss_pred ccCcccccccchHHHHHHHH--HHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 129 QTGSGTQSNMNANEVIANRA--AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHS 206 (497)
Q Consensus 129 q~g~g~~~~~n~nevi~~~~--~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~ 206 (497)
+++.++ |.||||+++. .|++| |++ || +||||||++||+++|++++.+ ..|.+.|..|+++|.+
T Consensus 64 ~~~~~~----~~~dVia~~~~l~e~~G---g~~-vH------~g~SsnD~~~Ta~~l~~r~~l-~~l~~~l~~L~~~L~~ 128 (403)
T 1dof_A 64 YRLERE----TGHDILSLVLLLEQKSG---CRY-VH------YGATSNDIIDTAWALLIRRAL-AAVKEKARAVGDQLAS 128 (403)
T ss_dssp ------------CHHHHHHHHHHHHHC---CSC-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhhc----cCCcHHHHHHHHHHHcC---CCc-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 887765 6789998865 68887 667 77 699999999999999998775 6999999999999999
Q ss_pred HHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHH
Q 010908 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286 (497)
Q Consensus 207 ~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~ 286 (497)
||++|++++||||||+|||+|+||||||++|+++|.|+ +||++++++++.+|||| |+|||.+.++ |++.+.+++++.
T Consensus 129 ~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGg-AvGt~~~~~~-~~~~~~~~~a~~ 205 (403)
T 1dof_A 129 MARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGG-AVGTMASWGE-LGLEVRRRVAER 205 (403)
T ss_dssp HHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCC-TTSSCGGGGG-GHHHHHHHHHHH
T ss_pred HHHHhcCCeeeccccCcccccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccH-HHhhCccccc-ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999 9999999876 889999999999
Q ss_pred cCCCCCCCCChhhHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCCCCCChhHHHH
Q 010908 287 TSLPFVTAENKFEALA-AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEA 365 (497)
Q Consensus 287 LGl~~~~~~n~~da~~-~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP~K~NP~~~E~ 365 (497)
|||+.++.+| +. +||++++++++|+.++++|+|||+||++|+ ++|||||.+| + +||||||||+||+.+|.
T Consensus 206 lGl~~~~~~~----~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~---~~e~~ei~lp-~-~GSSiMP~K~NP~~~E~ 276 (403)
T 1dof_A 206 LGLPHHVITT----QVAPRESFAVLASALALMAAVFERLAVEIRELS---RPEIGEVVEG-G-GGSSAMPHKANPTASER 276 (403)
T ss_dssp TTCCBCSSCS----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---STTTCSEESC-C----------CCCHHHHH
T ss_pred hCcCCCCCcc----hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCccCeEeCC-C-CccCCCCCCCCchHHHH
Confidence 9999976664 56 999999999999999999999999999999 6799999999 7 99999999999999999
Q ss_pred HHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHH---
Q 010908 366 LTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV--- 442 (497)
Q Consensus 366 i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~--- 442 (497)
++++|++|+|++.++..+ ..+++|+|...|.+.|..++++..+.+.+..+..+|++||+||++||+++++.+.+++
T Consensus 277 i~~~a~~v~g~~~~~~~~-~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~ 355 (403)
T 1dof_A 277 IVSLARYVRALTHVAFEN-VALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTE 355 (403)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHc-CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHH
Confidence 999999999999998764 4579999999998887777655555555555557999999999999999999888876
Q ss_pred ---HhhCcc-ccHHHHHHHHH----HHHHcCC-CHHHHHHHc
Q 010908 443 ---TSLNPK-IGYDNAAAVAK----KAHKEGT-TLKDAALKL 475 (497)
Q Consensus 443 ---t~La~~-ig~~~A~~ia~----~a~~~g~-~l~e~~~~~ 475 (497)
+.|+++ +||++||++++ +|.++|+ +++|++.+.
T Consensus 356 ~l~~~L~~~gig~~~A~~iv~~~~~~a~~~g~~~l~e~~~~~ 397 (403)
T 1dof_A 356 FHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDA 397 (403)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCcCHHHHHHHH
Confidence 889987 99999999965 7788998 999988763
No 20
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=1.6e-80 Score=661.08 Aligned_cols=413 Identities=15% Similarity=0.132 Sum_probs=362.6
Q ss_pred cccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHccccCCC
Q 010908 50 PSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LD------PAIGKAIMQAAQEVAEGKLNDH 122 (497)
Q Consensus 50 p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~------~~~a~~I~~a~~ev~~~~~~~~ 122 (497)
|.+.+|+.++.+..+.|+ ++.++++++.+|+|+|.++.+.| || ++++++|.++|+++..+
T Consensus 11 ~~~gRy~~~~~~~~~~fs--------d~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g----- 77 (462)
T 2ptr_A 11 PVDGRYGDKVSALRGIFS--------EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEE----- 77 (462)
T ss_dssp TTTTTTGGGSGGGGGTTS--------HHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHH-----
T ss_pred cccccccCchHHHHHHCC--------cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccC-----
Confidence 455577776444444485 78999999999999999999997 83 89999999999765432
Q ss_pred CcccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 010908 123 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPNLKVLH 201 (497)
Q Consensus 123 f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~-~L~~~l~~L~ 201 (497)
+++.+++++ +++++|+++++.++ .+++| +.|.. .|+++|||+||||||++||+++|++++.+ . .|.+.|..|+
T Consensus 78 -~~~~~~~~~-~~~~~dv~av~~~l-~e~~g-~~g~~-~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l-~~~l~~~L~~L~ 151 (462)
T 2ptr_A 78 -DAARIKTIE-RTTNHDVKAVEYFL-KEKVA-EIPEL-HAVSEFIHFACTSEDINNLSHALMLKTAR-DEVILPYWRQLI 151 (462)
T ss_dssp -HHHHHHHHH-HHHSCHHHHHHHHH-HHHHT-TSHHH-HTTGGGTTTTCCHHHHHHHHHHHHHHHHH-HHTHHHHHHHHH
T ss_pred -CHHHHHhhc-cccCCCHHHHHHHH-HHHhc-cccCC-cchhhhccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 355667666 78899998887665 58888 45544 78999999999999999999999998765 6 5999999999
Q ss_pred HHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCch----H
Q 010908 202 NSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD----V 277 (497)
Q Consensus 202 ~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~----~ 277 (497)
++|.+||++|++++||||||+|||+||||||||++|+++|.|+++||.+++ ..+++|| ||||+.+..+.|+ +
T Consensus 152 ~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~---~~~~~~G-AvGT~~~~~~~~~~~~~~ 227 (462)
T 2ptr_A 152 DGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVE---ILGKING-AVGNYNAHIAAYPEVDWH 227 (462)
T ss_dssp HHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---CEECCCC-TTSSCHHHHHHCTTSCHH
T ss_pred HHHHHHHHHccCCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHH---HHhccCc-hhcchhhcccccCcccHH
Confidence 999999999999999999999999999999999999999999999999987 3666776 9999988777776 7
Q ss_pred HHHHHHHHHcCCCCCCCCChhh-HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCCC
Q 010908 278 KIASAVAEETSLPFVTAENKFE-ALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPG 356 (497)
Q Consensus 278 ~v~~~la~~LGl~~~~~~n~~d-a~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP~ 356 (497)
++.+++++.|||. +|+++ ++++||++++++++|+.++++|+|||+|||+|+|+|+ |+| .+|+.++|||||||
T Consensus 228 ~v~~~~~~~LGl~----~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~--~~E-~~~~~~~GSSiMP~ 300 (462)
T 2ptr_A 228 QFSEEFVTSLGIQ----WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNH--FKQ-KTIAGEIGSSTMPH 300 (462)
T ss_dssp HHHHHHHHHTTCE----ECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--EEE-CCCTTCCSCSSCTT
T ss_pred HHHHHHHHHhCCC----CCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--hhc-cCCCCCCcCCCCCC
Confidence 8999999999994 57788 5899999999999999999999999999999999985 777 56678999999999
Q ss_pred CCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhh
Q 010908 357 KVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLH 436 (497)
Q Consensus 357 K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~ 436 (497)
|+||+.+|.++++|++|+|+..++..+.+.+++|+|...|.+.++++.++..+..++..|. .|++||+||++||+++++
T Consensus 301 K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~ 379 (462)
T 2ptr_A 301 KVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTL-KGVSKLEVNRDHLLDELD 379 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHH-HHHHHEEECHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHH-HHHCcCEECHHHHHHHHH
Confidence 9999999999999999999999998877778999999999998999999999999999997 799999999999999999
Q ss_pred hhHhHHH-----hhCccccHHHHHHHHHHHHH----cCCCHHHHHHHcCCC--CHHHHhhccCcccccCC
Q 010908 437 ESLMLVT-----SLNPKIGYDNAAAVAKKAHK----EGTTLKDAALKLGVL--NSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 437 ~s~~l~t-----~La~~ig~~~A~~ia~~a~~----~g~~l~e~~~~~~~l--~~~el~~~ldp~~~~g~ 495 (497)
.+++++| .|+++ ||++||++++++.. +|++|+|++.+.+.. .+++++ +|||++|+|+
T Consensus 380 ~~~~~~te~~~~~l~~~-G~~~A~~iv~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~l~-~ldp~~~~~~ 447 (462)
T 2ptr_A 380 HNWEVLAEPIQTVMRRY-GIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLK-AMTPANYIGR 447 (462)
T ss_dssp TCGGGGHHHHHHHHHHT-TCSSHHHHHHHC-----CCHHHHHHHHHTSSSCHHHHHHHH-TCCGGGCCTT
T ss_pred cCCchHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCcccHHHHH-hCCHHHHhCh
Confidence 9999888 66765 99999999998876 888999999876743 368899 9999999987
No 21
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=1.3e-74 Score=610.79 Aligned_cols=397 Identities=17% Similarity=0.172 Sum_probs=318.9
Q ss_pred CccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccC
Q 010908 53 KLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 131 (497)
Q Consensus 53 ~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g 131 (497)
.+|+.+.++.+ |+ +++++++|++||.|++.++.+ | ||++.+++|.++++ + ....+...
T Consensus 3 ~ry~~~~m~~~--fs--------~~~~~~~~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~-~---------d~~~i~~~ 61 (438)
T 4eei_A 3 KRYDVAEISKI--WA--------DENKYAKMLEVELAILEALED-RMVPKGTAAEIRARAQ-I---------RPERVDEI 61 (438)
T ss_dssp GGGCCHHHHHH--HS--------HHHHHHHHHHHHHHHHHHGGG-TTSCTTHHHHHHHHCC-C---------CHHHHHHH
T ss_pred cccCcHHHHHH--cC--------hHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhhCC-C---------CHHHHHHH
Confidence 38999999999 74 789999999999999999999 9 99999999988741 1 11111000
Q ss_pred cccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010908 132 SGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211 (497)
Q Consensus 132 ~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~ 211 (497)
. ..++.++. .+++.+.+.+|+..|+| || +|+||||++||+++|++++.+ ..|.+.|..|+++|.++|++|
T Consensus 62 e-~~~~hdV~-a~~~~l~e~~g~~~~~~-iH------~G~SsnDv~~Ta~~L~lr~~~-~~l~~~L~~l~~~L~~~A~~~ 131 (438)
T 4eei_A 62 E-KVTKHDII-AFCTSIAEQFTAETGKF-FH------FGVTSSDIIDSALSLQIRDSM-SYVIKDLEALCDSLLTKAEET 131 (438)
T ss_dssp H-HHHSCHHH-HHHHHHHTTSCTTTTTT-TT------CSCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HhcCCCHH-HHHHHHHHHcCHHhhcc-cC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 0 00122233 24567788888544777 88 599999999999999998764 799999999999999999999
Q ss_pred cCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCC
Q 010908 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 291 (497)
Q Consensus 212 ~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~ 291 (497)
++++||||||+||||||||||||++|+++|.|+++||++++++++.+|||| |+||++++++ .+.+.+++.|||+.
T Consensus 132 ~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgG-AvGT~~~~~~----~~~~~~a~~LG~~~ 206 (438)
T 4eei_A 132 KEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSG-AVGNYCILTT----EDEKKAADILGLPV 206 (438)
T ss_dssp TTCEEEEEETTEEEEEEETHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCC-TTSCCSSSCH----HHHHHHHHHHTCCB
T ss_pred hCCcccccccCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcc-HhhCcccccH----HHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999997 8999988765 45678999999986
Q ss_pred CCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CCCCCCCCCCCCCChhHHHHHHHH
Q 010908 292 VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMV 369 (497)
Q Consensus 292 ~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~~~GSSiMP~K~NP~~~E~i~~~ 369 (497)
.+.+ +++.+||++++++++|+.++++|+|||+||++|+ |+||||+.+| ++++||||||||+||+.+|.++++
T Consensus 207 ~~~~---~~v~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~---~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~~ 280 (438)
T 4eei_A 207 EEVS---TQVIPRDRIAKLISIHGLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGM 280 (438)
T ss_dssp CSSC---SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---STTTCSEECCC------------CCCCHHHHHHHHH
T ss_pred CCcc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccceeccccccCCCCCCCCCCCCCcHHHHHHHHH
Confidence 4333 4678999999999999999999999999999999 6799999998 569999999999999999999999
Q ss_pred HHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHhhhhHhHHH------
Q 010908 370 CAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT------ 443 (497)
Q Consensus 370 a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~t------ 443 (497)
|++|+|+..+. +.....+++++...+...|++++++..+.++++.+..+|++||+||++||+++++.++++++
T Consensus 281 a~~v~g~~~~~-~~~~~~~~erdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~ 359 (438)
T 4eei_A 281 ARMLRSHVSIA-LENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHF 359 (438)
T ss_dssp HHHHHHHHHHH-HHTTCCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHH
T ss_pred HHHHHHHHHHH-HhccchhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHH
Confidence 99999998654 33444578888888888889999999999999999899999999999999999998766543
Q ss_pred hhCc-cccHHHHHHH----HHHHHHcCCCHHHHHHHc------C--CCCHHHHhhccCcccccCC
Q 010908 444 SLNP-KIGYDNAAAV----AKKAHKEGTTLKDAALKL------G--VLNSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 444 ~La~-~ig~~~A~~i----a~~a~~~g~~l~e~~~~~------~--~l~~~el~~~ldp~~~~g~ 495 (497)
.|++ .+++++||++ +++|.+ |++|+|++.+. . .++++++++++| .+.|+
T Consensus 360 ~Lv~~g~~~~~Ah~~v~~~~~~a~~-g~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~d--~~gG~ 421 (438)
T 4eei_A 360 LVANTPFMREDCYKIVQQVAFDLKQ-GESFSKKLQKVMHDEHNIILDIPEMDFEGIKK--TYLKE 421 (438)
T ss_dssp HHHHSSCCHHHHHHHHHHC--------CCHHHHHHHHHHHTTCCCCCCCCCSHHHHHH--HHTTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhhhccccCCCHHHHHHHHH--hcCCc
Confidence 3443 3688888865 466778 99999998872 2 356788999998 67665
No 22
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-74 Score=616.84 Aligned_cols=411 Identities=15% Similarity=0.147 Sum_probs=325.8
Q ss_pred ccccccCccChHh-HHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHccccCCC
Q 010908 47 ILVPSDKLWGAQT-QRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG---LDPAIGKAIMQAAQEVAEGKLNDH 122 (497)
Q Consensus 47 ~~~p~~~~~g~~~-~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G---i~~~~a~~I~~a~~ev~~~~~~~~ 122 (497)
+..|.+.+|+.+. ++.+ |+ ++++++.|++++.|+|.++.++| ||++++++|.++++++..
T Consensus 7 ~~spl~~ry~~~~~m~~~--fs--------~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~------ 70 (478)
T 1yis_A 7 FESVLSTRYCKNSPLVSI--LS--------ETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDW------ 70 (478)
T ss_dssp CCCHHHHTTTTTCTHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCH------
T ss_pred CCCCcccccCChHHHHHH--cC--------chHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCH------
Confidence 5678887888877 9999 74 78999999999999999999999 599999999987654421
Q ss_pred CcccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010908 123 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHN 202 (497)
Q Consensus 123 f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~ 202 (497)
+...+. ....+.+++.+++. +.+.+| +.|+| +| +|+||||+.+|+..|++++.+ ..|.+.|..|++
T Consensus 71 ---~~~~~~-e~~~~~DV~a~v~~-l~e~~g-~~~~~-iH------~G~TS~Di~~ta~~L~lr~~l-~~l~~~L~~L~~ 136 (478)
T 1yis_A 71 ---PFIRSE-ERKLKHDVMAHNHA-FGKLCP-TAAGI-IH------LGATSCFVQDNADLIAYRDSI-DHILKRFATVID 136 (478)
T ss_dssp ---HHHHHH-HHHSSCHHHHHHHH-HHHHCT-TTGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ---HHHhhH-HHhcCCcHHHHHHH-HHHhhh-hchhh-ee------CCCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 111110 01224556666664 688888 66777 88 499999999999999997765 799999999999
Q ss_pred HHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccC------CCCCCCch
Q 010908 203 SLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTG------LNTKKGFD 276 (497)
Q Consensus 203 ~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~------~~~~~~~~ 276 (497)
+|.++|++|++++||||||+||||||||||||++|+++|.|+++||..+++++..+++|| ++||+ ++.++...
T Consensus 137 ~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg-~~GT~a~~~~~f~~d~~~~ 215 (478)
T 1yis_A 137 RLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKG-ATGTQDSFLTLFAGDESKV 215 (478)
T ss_dssp HHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCT-TTSSCHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCCCeeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhccchhhhcccCcchhhH
Confidence 999999999999999999999999999999999999999999999999999999999988 57999 44444345
Q ss_pred HHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CCCCCCCCC
Q 010908 277 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIM 354 (497)
Q Consensus 277 ~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~~~GSSiM 354 (497)
+++.+++++.|||+. +.+|+. ++++||++++++++|+.++++|+|||+||++|+| +|||.+| ++++|||||
T Consensus 216 ~~v~~~~a~~LG~~~-~~~~s~-~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s-----~~el~~p~~~~q~GSSiM 288 (478)
T 1yis_A 216 EALDELVTKKANFSN-RFLITG-QTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQA-----FGELLEPFEKDQIGSSAM 288 (478)
T ss_dssp HHHHHHHHHHTTCSC-BCSSCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTSEECC-----------
T ss_pred HHHHHHHHHHhCcCC-CCCccc-cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhheeccccCCCCccccC
Confidence 788999999999996 344554 6899999999999999999999999999999996 9999999 469999999
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908 355 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (497)
Q Consensus 355 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 434 (497)
|||+||+.+|.++++|++|+|++++++.....+++|+|...|.+.++.++++..+.++++.+..+|++||+||++||+++
T Consensus 289 P~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~ 368 (478)
T 1yis_A 289 PYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKI 368 (478)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSHHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHhHHHHHHHhccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHH
Confidence 99999999999999999999999988887788899999999999999999999999999999999999999999999999
Q ss_pred hhhhHhH-HHh-----hCc-cccHHHHHHHHHH--------HHHcCCCHHHHHHHcCC-CCHHHHhhcc-CcccccCC
Q 010908 435 LHESLML-VTS-----LNP-KIGYDNAAAVAKK--------AHKEGTTLKDAALKLGV-LNSEEFDNLV-VPEKMIGP 495 (497)
Q Consensus 435 l~~s~~l-~t~-----La~-~ig~~~A~~ia~~--------a~~~g~~l~e~~~~~~~-l~~~el~~~l-dp~~~~g~ 495 (497)
++.++++ +|+ |.. .+++++||+++++ +.++|+++.++..+.+. +++++++++| ||++|+|+
T Consensus 369 l~~~~~~~~te~v~~~l~~~G~~~~~Ah~~v~~~a~~~~~~v~~~g~~~~~l~~~~~~~l~~~el~~~l~dp~~~~g~ 446 (478)
T 1yis_A 369 VEDEIAFLGLEKAMMMLTEEGVDRQQAHAVIRKTALEAKQLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFTGR 446 (478)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------------CCCTTTTSTTTHHHHHHHHHCGGGGSTT
T ss_pred HHhCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHhCHHHHcCc
Confidence 9998776 554 333 2556889886633 23578886555443444 7899999999 99999997
No 23
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=1e-73 Score=613.48 Aligned_cols=418 Identities=16% Similarity=0.132 Sum_probs=346.7
Q ss_pred cccCCCcccccccCccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcc
Q 010908 40 EKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG--LDPAIGKAIMQAAQEVAEG 117 (497)
Q Consensus 40 e~d~~g~~~~p~~~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G--i~~~~a~~I~~a~~ev~~~ 117 (497)
+++.+.....|.+.+|+.+.++.+ |+ ++++++.|++++.|+|.++.++| ||++++++|.++++++.
T Consensus 28 ~~~~~~~~~spl~~ry~~~~m~~~--fS--------~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~-- 95 (503)
T 2j91_A 28 DHGSPDSYRSPLASRYASPEMCFV--FS--------DRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENID-- 95 (503)
T ss_dssp CSCCTTSCCCHHHHTTSCHHHHHH--TS--------HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCC--
T ss_pred cccCcccccCCcccccCCHHHHHH--hC--------hhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--
Confidence 444577888999999999999999 74 78999999999999999999999 89999999998764332
Q ss_pred ccCCCCcccccccCcccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHH
Q 010908 118 KLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNL 197 (497)
Q Consensus 118 ~~~~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l 197 (497)
.+...+. ...++.+++.+++. +.+.+| +.|+| || +|+||||+.+|+..|++++.+ ..|.+.|
T Consensus 96 -------~~~~~~~-e~~~~hDV~a~v~~-l~e~~g-~~~~~-iH------~G~TS~Di~dta~~L~lr~al-~~l~~~L 157 (503)
T 2j91_A 96 -------FKMAAEE-EKRLRHDVMAHVHT-FGHCCP-KAAGI-IH------LGATSCYVGDNTDLIILRNAL-DLLLPKL 157 (503)
T ss_dssp -------HHHHHHH-HHHHSCHHHHHHHH-HHHHCT-TTGGG-TT------TTCCTHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred -------HHHHhhh-hhhcCCcHHHHHHH-HHHHhc-ccccc-cc------CCCCHhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 2211111 11234556666663 678888 66777 88 599999999999999997765 7999999
Q ss_pred HHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccC------CCC
Q 010908 198 KVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTG------LNT 271 (497)
Q Consensus 198 ~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~------~~~ 271 (497)
..|+++|.++|++|++++||||||+||||||||||||++|+++|.|+++||+.+++++..+++|| ++||+ ++.
T Consensus 158 ~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG-~~GT~a~~~~~f~~ 236 (503)
T 2j91_A 158 ARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKG-TTGTQASFLQLFEG 236 (503)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCC-TTSSCHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCcEeeccccCccceecchHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cccchhhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988 68998 443
Q ss_pred CCCchHHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcC--CCCC
Q 010908 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEP 349 (497)
Q Consensus 272 ~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp--~~~~ 349 (497)
++...+++.+++++.|||+. +.+|+. ++++||++++++++|+.++++|+|||+|||+|+| +|||.+| ++++
T Consensus 237 D~~~~~~v~~~~a~~LGl~~-~~~~s~-~~~~rd~~~e~~~~la~la~~L~kia~Dirll~s-----~~ei~ep~~~~q~ 309 (503)
T 2j91_A 237 DDHKVEQLDKMVTEKAGFKR-AFIITG-QTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQI 309 (503)
T ss_dssp CHHHHHHHHHHHHHHTTCSC-BCSCCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSEECCC-----
T ss_pred chHHHHHHHHHHHHHhCCCC-CCCccc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cceeeccccCCCC
Confidence 43335688999999999996 344543 6889999999999999999999999999999996 9999999 4589
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHH
Q 010908 350 GSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 429 (497)
Q Consensus 350 GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~e 429 (497)
||||||||+||+.+|.++++|++|+|++++++.....+++|+|...|.+.++.++++..+.++++.+..+|++||+||++
T Consensus 310 GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~e 389 (503)
T 2j91_A 310 GSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPK 389 (503)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHHTTHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHH
T ss_pred CCCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 99999999999999999999999999998888777888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHhH-HHh-----hCc-cccHHHHHHHHHH-HHHc---------CCCHHHHHHHcCC--CCHHHHhhccCcc
Q 010908 430 RISKLLHESLML-VTS-----LNP-KIGYDNAAAVAKK-AHKE---------GTTLKDAALKLGV--LNSEEFDNLVVPE 490 (497)
Q Consensus 430 rm~~~l~~s~~l-~t~-----La~-~ig~~~A~~ia~~-a~~~---------g~~l~e~~~~~~~--l~~~el~~~ldp~ 490 (497)
||+++++.++++ +|+ |.. .+++++||+++++ |.+. +.+|.|.+..++. +++++|+++|||+
T Consensus 390 rm~~~l~~s~~~~ate~v~~~lv~~G~~~~~Ah~~v~~~a~~~g~~V~~~~~~~~l~e~l~~~~~~~l~~eel~~~ldp~ 469 (503)
T 2j91_A 390 VIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPS 469 (503)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHCGGGHHHHTTHHHHTCGG
T ss_pred HHHHHHHhccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHhcCcccCCCHHHHHHhcCHH
Confidence 999999998776 443 444 3677999876632 2222 2467777776655 5688999999999
Q ss_pred cccCC
Q 010908 491 KMIGP 495 (497)
Q Consensus 491 ~~~g~ 495 (497)
+|+|+
T Consensus 470 ~~~g~ 474 (503)
T 2j91_A 470 SFTGR 474 (503)
T ss_dssp GGSTT
T ss_pred HhCCc
Confidence 99997
No 24
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=5.3e-72 Score=577.27 Aligned_cols=342 Identities=19% Similarity=0.176 Sum_probs=291.4
Q ss_pred CccChHhHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccC
Q 010908 53 KLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 131 (497)
Q Consensus 53 ~~~g~~~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~~~~a~~I~~a~~ev~~~~~~~~f~~~~~q~g 131 (497)
.||+.++++.+ |+ ++++|++|++||+|+|.+|.++| ||++++++|.++|+++. |+++.++++
T Consensus 13 ~~~~~~~m~~~--fs--------~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~-------~~~~~~~~~ 75 (359)
T 2fel_A 13 GLFGDSEIIEL--FS--------AKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFA-------ADMSALRHG 75 (359)
T ss_dssp HHHCCHHHHGG--GS--------HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCC-------CCHHHHHHH
T ss_pred cccCCHHHHHH--cC--------cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcc-------ccHHHHHhh
Confidence 47899999999 74 78999999999999999999999 99999999999998753 567778777
Q ss_pred cccccccchHHHHHHHHHHHhCccCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010908 132 SGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211 (497)
Q Consensus 132 ~g~~~~~n~nevi~~~~~e~lg~~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~~L~~~l~~L~~~L~~~A~~~ 211 (497)
++++.+ ++++++.+ +.+++|++.| +|||+|+||||++||+++|++++.+ ..|.+.|..|+++|.++|++|
T Consensus 76 ~~~~~~-~~~~~~~~-l~~~~g~~~~-------~~vH~G~SsnDv~~Ta~~l~lr~~l-~~l~~~L~~l~~~L~~~A~~~ 145 (359)
T 2fel_A 76 VAKDGV-VVPELIRQ-MRAAVAGQAA-------DKVHFGATSQDVIDTSLMLRLKMAA-EIIATRLGHLIDTLGDLASRD 145 (359)
T ss_dssp HHHHSS-SHHHHHHH-HHTTSCGGGG-------GGTTTTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-cHHHHHHH-HHHHcCcccc-------chhcCCCCHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 777666 88888766 4556764444 4455799999999999999998765 799999999999999999999
Q ss_pred cCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCCCchHHHHHHHHHHcCCCC
Q 010908 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 291 (497)
Q Consensus 212 ~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~ 291 (497)
++++||||||+||||||||||||++|+++|.|+++||++++++++.+|||| |+||+.+ .++|++.+.+++++.|||+.
T Consensus 146 ~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-avGT~~~-~~~~~~~~~~~~a~~LG~~~ 223 (359)
T 2fel_A 146 GHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGG-AAGTLEK-LGDNAGAVRADLAKRLGLAD 223 (359)
T ss_dssp TTSEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCC-TTSSCTT-TGGGHHHHHHHHHHHHTCBC
T ss_pred cCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcH-HhccCcc-CcchHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999999999999999999999999 8999754 55888999999999999998
Q ss_pred CCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 010908 292 VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCA 371 (497)
Q Consensus 292 ~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~GSSiMP~K~NP~~~E~i~~~a~ 371 (497)
++ +++++||++++++++|+.++++|+|||+|||+|+| +| ||+.+|. ++|||||||||||+.+|.++++|+
T Consensus 224 ~~-----~~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s---~e-~Ei~~~~-~~GSS~MP~K~NP~~~E~i~~~a~ 293 (359)
T 2fel_A 224 RP-----QWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAE---IG-SEIRLSG-GGGSSAMPHKQNPVNAETLVTLAR 293 (359)
T ss_dssp CC-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HC-TTEEEC-------------CCHHHHHHHHHHH
T ss_pred Cc-----hHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC-CeecCCC-CCCCccCCcccCCHHHHHHHHHHH
Confidence 54 36789999999999999999999999999999996 68 9999997 499999999999999999999999
Q ss_pred HhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Q 010908 372 QVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 434 (497)
Q Consensus 372 ~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 434 (497)
++.|+..+.. ....+|+|++...+...|..++.++.+.++++.....+++||+||++||..+
T Consensus 294 ~v~~~~~~~~-~~~~~~~er~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 294 FNAVQISALH-QSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp HHHHHHHHHH-HTTCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred HHHHHHHHHH-HHhhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 9999988876 4567789988887777778888888888888888889999999999999865
No 25
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=5.8e-69 Score=572.57 Aligned_cols=407 Identities=18% Similarity=0.199 Sum_probs=316.6
Q ss_pred cccCccChH--hHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHHHccccCCCCc-
Q 010908 50 PSDKLWGAQ--TQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEY-G-LDPAIGKAIMQAAQEVAEGKLNDHFP- 124 (497)
Q Consensus 50 p~~~~~g~~--~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~-G-i~~~~a~~I~~a~~ev~~~~~~~~f~- 124 (497)
|.+.+|+.+ .++.+ |+ ++.+++.++.++.|++.++.+. | ||++.+++|.+ +.++.+....+.+.
T Consensus 10 ~~~gRy~~~~~~~~~~--~s--------d~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~-l~~~~~~~~~~d~~~ 78 (465)
T 2qga_B 10 PIDGRYKKACGELSAF--FS--------EHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEV-LNQIATNITDSDIAR 78 (465)
T ss_dssp TTTTTTHHHHGGGGGT--SS--------HHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHH-HHHHHHCCCHHHHHH
T ss_pred cccccccCCcHHHHHH--hC--------HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHhhccccHHH
Confidence 455677665 56666 63 7899999999999999999999 9 99999999875 33332211000110
Q ss_pred ccccccCcccccccchHHHHHHHHHHHhCc-------cCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHH-HHHHH
Q 010908 125 LVVWQTGSGTQSNMNANEVIANRAAEILGH-------KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPN 196 (497)
Q Consensus 125 ~~~~q~g~g~~~~~n~nevi~~~~~e~lg~-------~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~-~L~~~ 196 (497)
+..+.. ..+.++ -.++..+.+.+|. +.|+| || +|+||||++||+++|++++.+ . .|.+.
T Consensus 79 i~~~e~----~~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~-iH------~g~SsnDv~~Ta~~L~lr~~l-~~~l~~~ 145 (465)
T 2qga_B 79 VKAIEE----ETNHDV-KAVEYFVKEKLKNSKREDLLKIKEY-VH------YLCTSEDINNVAYATCLKACL-NDVVIPC 145 (465)
T ss_dssp HHHHHH----HHSCHH-HHHHHHHHHHHHTSCCHHHHHHGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHTHHHH
T ss_pred HHHHhh----ccCCCh-HHHHHHHHHHhcccccccchhhhhh-cc------CCCChhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 001100 123444 4567888888872 44566 66 699999999999999998764 6 79999
Q ss_pred HHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC-Cc
Q 010908 197 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK-GF 275 (497)
Q Consensus 197 l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~-~~ 275 (497)
|..|+++|.++|++|++++||||||+||||||||||||++|+++|.|+++||..++ .+++||||+|| ++... .|
T Consensus 146 L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAvGT-~~a~~~~~ 220 (465)
T 2qga_B 146 LEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVK----VCAKFNGAVGN-FNAHKVAS 220 (465)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSC----CEECCCCTTSS-CHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH----HhccccchhcC-cccccccc
Confidence 99999999999999999999999999999999999999999999999999998876 67888889999 54321 12
Q ss_pred h----HHHHHHHHHH-cCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCCC
Q 010908 276 D----VKIASAVAEE-TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPG 350 (497)
Q Consensus 276 ~----~~v~~~la~~-LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~G 350 (497)
+ ..+.+.+++. |||+.++.+ +++++||++++++++|+.++++|+|||+||++|+|+ |+.+..+|++++|
T Consensus 221 p~~d~~~~~~~~~~~~LGl~~~~~~---~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---~~~~e~~~~~~~G 294 (465)
T 2qga_B 221 KDTDWVNTIGLFLKKHFNLTYSIYC---TQIQDHDYICELCDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVG 294 (465)
T ss_dssp TTCCHHHHHHHHHHHHHCCEECCCC---SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEEC-------
T ss_pred CcccHHHHHHHHHHHHhCCCCCCCc---cchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cceeeeCCCCCCC
Confidence 2 3455666665 999986544 468899999999999999999999999999999985 6756556778999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHHH
Q 010908 351 SSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRER 430 (497)
Q Consensus 351 SSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~er 430 (497)
||||||||||+.+|.+++.+..+.|....+.......+++++...+...++++..+.....++..+ ..|++||+||++|
T Consensus 295 SSiMP~K~NP~~~e~~~g~~~~~~~~~~~~~~~l~~~~~erdl~~s~~~r~l~~~~~~~~~~l~~~-~~~l~~l~vn~~~ 373 (465)
T 2qga_B 295 SSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSV-LKGLNKIDIDRRN 373 (465)
T ss_dssp CCSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTBCTHHHHHHTTHHHHHHHHHHHHHHH-HHHHHHEEECHHH
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHccCEECHHH
Confidence 999999999999999999999999998777665545566666555544556677777777777777 4799999999999
Q ss_pred HHHHhhhhHhHH-----HhhCccccHHHHHHHHHHHHHcCC-----CHHHHHHHcC-CCCH---HHHhhccCcccccCC
Q 010908 431 ISKLLHESLMLV-----TSLNPKIGYDNAAAVAKKAHKEGT-----TLKDAALKLG-VLNS---EEFDNLVVPEKMIGP 495 (497)
Q Consensus 431 m~~~l~~s~~l~-----t~La~~ig~~~A~~ia~~a~~~g~-----~l~e~~~~~~-~l~~---~el~~~ldp~~~~g~ 495 (497)
|+++++.+++++ +.|+++ ||++||++++++.. +. +|.+.+.++. .+++ ++|+ +|||++|+|+
T Consensus 374 m~~~l~~~~~~~ae~v~~~L~~~-G~~~A~~iv~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~ldp~~y~G~ 449 (465)
T 2qga_B 374 LEEELNQNWSTLAEPIQIVMKRH-NYVDAYEELKQFTR-GKVIDQKIMQEFIKTKCAFLPQDVVDQLL-ELTPATYTGY 449 (465)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHT-TCSCHHHHHHHHHT-TSCCCHHHHHHHHHHHSTTSCHHHHHHHH-HCCGGGCCTT
T ss_pred HHHHHHcCCChHHHHHHHHHHHh-ChHHHHHHHHHHHh-hhhhccCCHHHHHHhchhcCCcchHHHHH-hcCHHHhCCc
Confidence 999999998875 678876 99999999999875 43 4566666553 4777 8898 9999999996
No 26
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=8.8e-68 Score=562.65 Aligned_cols=405 Identities=18% Similarity=0.161 Sum_probs=317.9
Q ss_pred cccCccChH--hHHHhhcCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHccccC
Q 010908 50 PSDKLWGAQ--TQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LD------PAIGKAIMQAAQEVAEGKLN 120 (497)
Q Consensus 50 p~~~~~g~~--~~rai~~F~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~G-i~------~~~a~~I~~a~~ev~~~~~~ 120 (497)
|.+.+|+.+ .++.+ |+ ++.+++.+++++.|++.++++.| || ++++++|.++++++..+
T Consensus 14 ~~~gRy~~~~~~~~~~--fs--------d~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~--- 80 (459)
T 3bhg_A 14 PIDGRYVNKTRALSPY--FS--------EFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNES--- 80 (459)
T ss_dssp TTTTTTHHHHGGGTTT--SS--------HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHH---
T ss_pred cccccccCChHHHHHH--cC--------HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccc---
Confidence 555677776 56666 74 78999999999999999999995 73 79999999998654211
Q ss_pred CCCcccccccCcccccccchHHHHHHHHHHHhCc-----cCCCccccCccccCCCCChhcHHHHHHHHHHHHHHHH-HHH
Q 010908 121 DHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH-----KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLI 194 (497)
Q Consensus 121 ~~f~~~~~q~g~g~~~~~n~nevi~~~~~e~lg~-----~~g~~~vH~~~~vn~g~SsnDi~~Ta~~l~~~~~~~~-~L~ 194 (497)
.|.. .... ...++.++ ..++..+.+.+|. +.|+| || +||||||++||+++|++++.+ . .|.
T Consensus 81 -d~~~--~~~~-e~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~-iH------~g~SsnDv~~Ta~~L~lr~~l-~~~l~ 147 (459)
T 3bhg_A 81 -EAEK--IKEF-EKQTNHDV-KAVEYYLQDKFQENEQLKSCVAF-IH------FACTSEDINNLAYALMIKQAI-AQVIQ 147 (459)
T ss_dssp -HHHH--HHHH-TTTCSSHH-HHHHHHHHHHHTTSTTGGGGGGG-TT------TTCCHHHHHHHHHHHHHHHHH-HHTHH
T ss_pred -cHHH--HHHH-HHhcCCCh-HHHHHHHHHHhcccccCchhhhh-hc------CCCCHHhHHHHHHHHHHHHHH-HHHHH
Confidence 0111 1000 01123444 4567888898982 23444 55 799999999999999998764 6 699
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccccCcCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCCCCC-
Q 010908 195 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK- 273 (497)
Q Consensus 195 ~~l~~L~~~L~~~A~~~~~~~~~GrTH~Q~A~P~TlG~~~a~~~~~l~r~~~rL~~~~~~l~~~~lGg~AvGT~~~~~~- 273 (497)
+.|..|+++|.++|++|++++||||||+||||||||||||++|+++|.|+++||++++ .+++||||+|| ++...
T Consensus 148 ~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAvGT-~~a~~~ 222 (459)
T 3bhg_A 148 PTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVL----IPAKFNGAVGN-YNAHVA 222 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCSSSS-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccccccc-cccccc
Confidence 9999999999999999999999999999999999999999999999999999998876 46777779999 55321
Q ss_pred Cch----HHHHHHHHHHcCCCCCCCCChhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEEcCCCCC
Q 010908 274 GFD----VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP 349 (497)
Q Consensus 274 ~~~----~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kiA~Dl~ll~S~pr~eigev~lp~~~~ 349 (497)
.|+ +.+.+++++.|||+..+.++ ++++||++++++++|+.++++|+|||+||++|+|+ |+.+...|+.++
T Consensus 223 ~~~~~~~~~~~~~~~~~LGl~~~~~~~---~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---~~~~e~~~~~~~ 296 (459)
T 3bhg_A 223 AYPEVDWRKHCANFVTSLGLSFNAYTT---QIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISL---GYFKQKTIAEEV 296 (459)
T ss_dssp HCTTSCHHHHHHHHHHHTTCEECSSCS---SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEECC-----
T ss_pred ccCcccHHHHHHHHHHHhCCCCCcccc---chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cceehccCCCCC
Confidence 222 56788888899998654443 47899999999999999999999999999999985 665545566799
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhhhhhHHHhhcccccccccchhhhhHHhHHHHHHHHHHHHHHHHHHHHhccccCHH
Q 010908 350 GSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRE 429 (497)
Q Consensus 350 GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~ll~~~~~l~~~~~~~~~~~i~gl~vn~e 429 (497)
|||||||||||+.+|.+++.+..+.|....+.......+++++...+...++++..+..+..++..+ ..|++||+||++
T Consensus 297 GSSiMP~K~NP~~~e~~~g~~~l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~-~~~l~gl~vn~e 375 (459)
T 3bhg_A 297 GSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSV-AKGNDKLQINKS 375 (459)
T ss_dssp -CCSSCCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHH-HHHHTTEEECHH
T ss_pred CCCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHH-HHHHCcCEECHH
Confidence 9999999999999999999999999987777665544566666555545556677777777777777 479999999999
Q ss_pred HHHHHhhhhHhHH-----HhhCccccHHHHHHHHHHHHHcCC-----CHHHHHHHcCCC--CHHHHhhccCcccccCC
Q 010908 430 RISKLLHESLMLV-----TSLNPKIGYDNAAAVAKKAHKEGT-----TLKDAALKLGVL--NSEEFDNLVVPEKMIGP 495 (497)
Q Consensus 430 rm~~~l~~s~~l~-----t~La~~ig~~~A~~ia~~a~~~g~-----~l~e~~~~~~~l--~~~el~~~ldp~~~~g~ 495 (497)
||+++++.+++++ +.|+++ ||++||++++++.. |. +|+|++.+.+.- ..++|+ ++||.+|+|.
T Consensus 376 ~m~~~l~~~~~~~te~~~~~L~~~-G~~~A~~iv~~~~~-~~~~~~~~l~~~l~~l~~~~~~~~~l~-~~dp~~y~g~ 450 (459)
T 3bhg_A 376 ALQKDLSENWEVLAEAIQTVMRRY-NEPNAYEQLKELTR-GQMIDAENLKKFIKTLSIPEEAKAELM-KLTPETYTGL 450 (459)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHT-TCTTHHHHHHHHHT-TSCCCHHHHHHHHHTSCSCHHHHHHHH-HCCGGGCCTT
T ss_pred HHHHHHHcCCchHHHHHHHHHHHh-ChHHHHHHHHHHHh-hcccccccHHHHHHhcCCCchhHHHHH-hCCHHHHhCc
Confidence 9999999999987 566665 99999999999887 44 477777664421 246787 9999999996
No 27
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=20.63 E-value=32 Score=21.11 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=12.0
Q ss_pred ccccccCcCCchhh
Q 010908 219 RTHTQDATPLTLGQ 232 (497)
Q Consensus 219 rTH~Q~A~P~TlG~ 232 (497)
|+|-|+|.|+.-|+
T Consensus 2 r~Hp~~agp~p~gq 15 (26)
T 1fgl_B 2 RXHPVHAGPIAPGQ 15 (26)
T ss_pred CcCcccCCCCCCCC
Confidence 78999999988775
Done!