RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010908
(497 letters)
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 945 bits (2445), Expect = 0.0
Identities = 325/482 (67%), Positives = 374/482 (77%), Gaps = 1/482 (0%)
Query: 15 STTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERER 74
+ + + Y R ++SFR E D FG I VP+DK WGAQTQRS QNF IGG RER
Sbjct: 6 NCSCKTFVKSSYKLNIRRMNSSFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARER 65
Query: 75 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 133
MP P+V AFG+LKK AA VN G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSG
Sbjct: 66 MPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSG 125
Query: 134 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193
TQSNMNANEVI+NRA EILG K G K VHPN+H N+SQSSNDTFPTVMHIAA+++ + L
Sbjct: 126 TQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNEL 185
Query: 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 253
IP L L N+L +KS EF IVKIGRTH QDATPLTLGQEFSGY QV+ GI RV L
Sbjct: 186 IPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLK 245
Query: 254 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 313
+ LAQGGTAVGTGLNTK GFDVKIA +++ET L F TA N+FEALAAHDA VE SGA
Sbjct: 246 TLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGA 305
Query: 314 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 373
LNT+A SL KIA D+R LGSGPRCG EL+LPENEPGSSIMPGKVNPTQ EALT VC QV
Sbjct: 306 LNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQV 365
Query: 374 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433
+GN+ AIT GS G FELNVFKP++ + LL+S+RL+ DA+ SF +CV GI+AN RI +
Sbjct: 366 MGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHE 425
Query: 434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 493
LL +SLMLVT+LNPKIGYD A+ VAK AHK+G TLK++AL+LGVL +EFD VVPE M+
Sbjct: 426 LLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 485
Query: 494 GP 495
GP
Sbjct: 486 GP 487
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 945 bits (2445), Expect = 0.0
Identities = 262/463 (56%), Positives = 326/463 (70%), Gaps = 1/463 (0%)
Query: 36 SFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNM 95
+R E+DT G + VP+DK WGAQTQRSL+NF IG +R RMP I+RA+G+LKK AA+ N+
Sbjct: 2 EYRIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANL 61
Query: 96 EYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 154
E G L I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG
Sbjct: 62 ELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGK 121
Query: 155 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 214
G K HPNDHVNR QSSNDTFPT M++A A+ + RL P ++ L + +K+ F I
Sbjct: 122 PLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQI 181
Query: 215 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 274
VK+GRTH DA P+TLGQE + Q+K + V +Y LA GGTAVGTGLN
Sbjct: 182 VKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPR 241
Query: 275 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 334
F +A +AEET LPF AEN+F ALAAHD V GA+ T+A +LMKI NDVR L SG
Sbjct: 242 FGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASG 301
Query: 335 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 394
P G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV +V GN + GS G+F+LNV+
Sbjct: 302 PYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVY 361
Query: 395 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA 454
KP++A L S+ LL DA ASF+ + +GI+ N ERI + L ++ ML T+LN IGYD A
Sbjct: 362 KPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKA 421
Query: 455 AAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 497
A + KKA KE TLK AAL+LG L EEFD +VVP ++ P +
Sbjct: 422 AEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPHE 464
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 945 bits (2444), Expect = 0.0
Identities = 333/482 (69%), Positives = 387/482 (80%), Gaps = 1/482 (0%)
Query: 15 STTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERER 74
S+ L Y + SFR E DTFG + VP+DK +GAQT RS NF IGG ER
Sbjct: 8 SSGVDLGTENLYFQSMMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTER 67
Query: 75 MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 134
MP P+++AFGILK+ AA+VN +YGLDP I AIM+AA EVAEGKLNDHFPLVVWQTGSGT
Sbjct: 68 MPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGT 127
Query: 135 QSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 193
Q+NMN NEVI+NRA E+LG + G K VHPNDHVN+SQSSNDTFPT MHIAAA+E + L
Sbjct: 128 QTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVL 187
Query: 194 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 253
+P L+ LH++L +KS EF I+KIGRTHTQDA PLTLGQEFSGY QVKY + R+ +P
Sbjct: 188 LPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMP 247
Query: 254 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 313
R+Y+LA GGTAVGTGLNT+ GF K+A+ VA T LPFVTA NKFEALAAHDA VE SGA
Sbjct: 248 RIYELAAGGTAVGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGA 307
Query: 314 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 373
+NT A SLMKIAND+R LGSGPR GLGELILPENEPGSSIMPGKVNPTQCEA+TMV AQV
Sbjct: 308 MNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQV 367
Query: 374 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 433
+GNHVA+TVGGSNGHFELNVFKPM+ +LHS RLLGDAS SF +NCV GIQAN ERI+K
Sbjct: 368 MGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINK 427
Query: 434 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 493
L++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD V P+ M+
Sbjct: 428 LMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDML 487
Query: 494 GP 495
GP
Sbjct: 488 GP 489
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 930 bits (2407), Expect = 0.0
Identities = 280/463 (60%), Positives = 342/463 (73%), Gaps = 4/463 (0%)
Query: 35 TSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKVN 94
+ R EKD+ G I VP+DKLWGAQTQRSL++F I E+ MP ++ A + K+ AAKVN
Sbjct: 2 NTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEK--MPTSLIHALALTKRAAAKVN 59
Query: 95 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 153
+ G L AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG
Sbjct: 60 EDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 119
Query: 154 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 212
RG + VHPND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F
Sbjct: 120 GVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFA 179
Query: 213 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 272
DIVKIGRT+ QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT
Sbjct: 180 DIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTH 239
Query: 273 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 332
+ ++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L
Sbjct: 240 PEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLA 299
Query: 333 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 392
SGPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELN
Sbjct: 300 SGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELN 359
Query: 393 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 452
VF+PM+ L S+RLL D SF K+C GI+ NRERI++LL+ESLMLVT+LN IGYD
Sbjct: 360 VFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYD 419
Query: 453 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 495
AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M+G
Sbjct: 420 KAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGS 462
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 927 bits (2398), Expect = 0.0
Identities = 292/475 (61%), Positives = 350/475 (73%), Gaps = 4/475 (0%)
Query: 21 AGTLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIV 80
GTL ++R E D+FG I + WGAQTQRSL NF I ++ MP+ ++
Sbjct: 9 MGTLEAQTQGPGSMKNYRIESDSFGEIQIEEKFYWGAQTQRSLNNFKISKQK--MPKILI 66
Query: 81 RAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMN 139
RA ILKKCAA+VN E+G L+ I +I +A + G+ D+FPLVVWQTGSGTQ+NMN
Sbjct: 67 RALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMN 126
Query: 140 ANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 198
NEVIA+ A E L K+G K VHPNDHVN+ QSSND+FPT MHIA + T +LIP L
Sbjct: 127 MNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALN 186
Query: 199 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 258
L L KS ++ I+KIGRTH QDATPLTL QEFSGY TQ++Y ++R+ L ++Y L
Sbjct: 187 NLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLL 246
Query: 259 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVA 318
AQGGTAVGTG+N+K GFD+K A VAE T PF TA NKFE+LAAHDA VE SG LNT+A
Sbjct: 247 AQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIA 306
Query: 319 ASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHV 378
SLMKIAND+RLLGSGPRCGLGEL LPENEPGSSIMPGKVNPTQ EALTMVC QV+GNHV
Sbjct: 307 VSLMKIANDIRLLGSGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHV 366
Query: 379 AITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHES 438
+T+ GSNGH ELNVFKP+I +L S+ LL D+ SF +CV+G++ N RI+ L +S
Sbjct: 367 TVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKS 426
Query: 439 LMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 493
LMLVT LNP IGYDNAA +AK+AHK G TLK+AA KL L+ EEFD +VVPEKMI
Sbjct: 427 LMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 906 bits (2343), Expect = 0.0
Identities = 235/473 (49%), Positives = 307/473 (64%), Gaps = 14/473 (2%)
Query: 31 RSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCA 90
+ S ++R E DT G + VP+ LW AQTQR+++NF I G + +RA G+LK
Sbjct: 26 DADSANYRIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRG--LERTQIRALGLLKGAC 83
Query: 91 AKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 149
A+VN + G L P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA
Sbjct: 84 AQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA 143
Query: 150 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 209
+ G +HPND VN SQSSNDTFPT HIAA + LIP L+ LH++L +K++
Sbjct: 144 K------GGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKAL 197
Query: 210 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 269
++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +LA GGTAVGTGL
Sbjct: 198 DWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGL 257
Query: 270 NTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDV 328
N F V++ + + +T L TA N FEA AA D VE SGAL T+A SL KIAND+
Sbjct: 258 NAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDI 317
Query: 329 RLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGH 388
R +GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN AI GG+NG
Sbjct: 318 RWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGA 377
Query: 389 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPK 448
FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L S +VT LN
Sbjct: 378 FELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSA 437
Query: 449 IGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFDNLVVPEKMIGPSD 497
IGY+ AAAVAK+A KE T++ + G+ L+ E+ D + M
Sbjct: 438 IGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAEQ 490
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 881 bits (2278), Expect = 0.0
Identities = 193/464 (41%), Positives = 286/464 (61%), Gaps = 5/464 (1%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
+T R EKD G +P D +G QT R+ +NF I G R + ++++ GI+KK AA
Sbjct: 2 NTDVRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYR--IHPELIKSLGIVKKSAALA 59
Query: 94 NMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
NME G LD +G+ I++AA EV EGK ND F + Q G+GT NMNANEVIANRA E++
Sbjct: 60 NMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELM 119
Query: 153 GHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211
G ++G + PN HVN SQS+ND FPT HIA + ++LI K + K+ EF
Sbjct: 120 GEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAV-LSLLNQLIETTKYMQQEFMKKADEF 178
Query: 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271
++K+GRTH QDA P+ LGQEF Y + I+R+ +Y + G TAVGTGLN
Sbjct: 179 AGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNA 238
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
+ + +A+ + P +A++ +A D + E S AL ++ KIAND+RL+
Sbjct: 239 DPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLM 298
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
SGPR GL E++LP +PGSSIMPGKVNP E + V QV GN + IT G FEL
Sbjct: 299 ASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFEL 358
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGY 451
NV +P++ L+ S+ ++ + SF +NC++GI+AN ER+ + + +S+ ++T++NP +GY
Sbjct: 359 NVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGY 418
Query: 452 DNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 495
+ AA +A++A+ G ++++ +K GVL E+ + ++ P +MI P
Sbjct: 419 ETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 863 bits (2232), Expect = 0.0
Identities = 180/466 (38%), Positives = 267/466 (57%), Gaps = 4/466 (0%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
S + R E+D G VP+D +G T R+++NF I + VR ++KK AA
Sbjct: 2 SNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMA 61
Query: 94 NMEYG-LDPAIGKAIMQAAQEV-AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEI 151
N E + ++ AI+ A EV GK D FP+ V+Q G+GT NMN NEV+AN E+
Sbjct: 62 NKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLEL 121
Query: 152 LGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVE 210
+GH++GE ++PNDHVN+ QS+ND +PT IA +L+ + L K+VE
Sbjct: 122 MGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLI-KLVDAINQLREGFERKAVE 180
Query: 211 FKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN 270
F+DI+K+GRT QDA P+TLGQEF ++ +K + + + ++ G TA+GTGLN
Sbjct: 181 FQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN 240
Query: 271 TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRL 330
T K + +AE T P V AE+ EA + A+V GAL +A + KI ND+RL
Sbjct: 241 TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRL 300
Query: 331 LGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFE 390
L SGPR GL E+ LPE + GSSIMP KVNP E + VC +VIGN +T+ G +
Sbjct: 301 LSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQ 360
Query: 391 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIG 450
LNV +P+I + S+ +L +A + + C+ GI AN+E ++ S+ +VT LNP IG
Sbjct: 361 LNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIG 420
Query: 451 YDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496
+ N V K + G ++++ L+ G+L E D++ + ++ P+
Sbjct: 421 HHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 859 bits (2221), Expect = 0.0
Identities = 184/461 (39%), Positives = 265/461 (57%), Gaps = 4/461 (0%)
Query: 34 STSFREEKDTFGPILVPSDKLWGAQTQRSLQNFDIGGERERMPEPIVRAFGILKKCAAKV 93
+ R E+D+ G +P D +G QT R+++NF + +VRA ++KK AA
Sbjct: 20 GSMTRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATA 79
Query: 94 NMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 152
N + L AI+ A ++ +G L + F + V+Q G+GT SNMNANEVIANRA E L
Sbjct: 80 NYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHL 139
Query: 153 GHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 211
G RG+ +HPND VN SQS+ND +PT + +A + N ++ L L + +K EF
Sbjct: 140 GRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQN-QVQTALHRLIAAFEAKGREF 198
Query: 212 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 271
++KIGRT QDA P+TLGQEF + ++ R+ ++ GGTA+GT +N
Sbjct: 199 ATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINA 258
Query: 272 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 331
+ + +++ + + N EA AFV SG L +A L KIAND+RLL
Sbjct: 259 SHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLL 318
Query: 332 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 391
SGPR GLGE+ LP +PGSSIMPGKVNP E++ VC QVIGN + +T+ +G +L
Sbjct: 319 SSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQL 378
Query: 392 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGY 451
N F+P+I +L S+RLLG A + + CV GI+AN ER ES+ L T+L P +GY
Sbjct: 379 NAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGY 438
Query: 452 DNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 492
AA +AK+A G T+ + A+ G L++ ++ P +M
Sbjct: 439 ARAAEIAKQALASGQTVMEVAISKG-LDASALTIMLDPLRM 478
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 113 bits (285), Expect = 2e-27
Identities = 69/338 (20%), Positives = 128/338 (37%), Gaps = 50/338 (14%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ + + ++ + + S++ ++ V +GRT Q A P+TLG + + + + K +DR
Sbjct: 124 DALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDR 183
Query: 248 VICCLPRMYQLAQGGTAVGTGLNT-KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 306
+ R+ GG AVG+ + +G V A A++ L D
Sbjct: 184 INAIKARVLVAQLGG-AVGSLASLQDQGSIV--VEAYAKQLKLGQTACTW----HGERDR 236
Query: 307 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 364
VE + L + ++ K+A D L+ + + E+ P + GSS MP K NP
Sbjct: 237 IVEIASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRNPVAAA 293
Query: 365 ALTMVCAQVIGNHVAITVG---------GSNGHFELNVFKPMIASGLLHSLRLLGDASAS 415
++ A + ++ H E L +L A
Sbjct: 294 SVL-AAANRVPALMSSIYQSMVQEHERSLGAWHAEWLS--------LPEIFQLTAGALER 344
Query: 416 FEKNCVRGIQANRERISKLLH--------ESLMLVTSLNPKIG----YDNAAAVAKKAHK 463
+ ++G++ N E + + + E++M+ +L P +G + A K A
Sbjct: 345 T-LDVLKGMEVNAENMHQNIECTHGLIMAEAVMM--ALAPHMGRLNAHHVVEAACKTAVA 401
Query: 464 EGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 497
E LKD + N + D + PE +G
Sbjct: 402 EQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGNIQ 439
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 111 bits (281), Expect = 7e-27
Identities = 76/338 (22%), Positives = 123/338 (36%), Gaps = 50/338 (14%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ + +L L ++L ++++ D +GRT Q ATP+TLG + +G + R
Sbjct: 120 DALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQR 179
Query: 248 VICCLPRMYQLAQGGTAVGTGLNT-KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 306
+ PR+ L GG A G+ K V A A+AE+ L D
Sbjct: 180 LQELRPRLLVLQFGG-ASGSLAALGSKAMPV--AEALAEQLKLTLPEQPWH----TQRDR 232
Query: 307 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 364
VE + L VA SL K D+ LL + GE+ P + GSS MP K NP
Sbjct: 233 LVEFASVLGLVAGSLGKFGRDISLLM---QTEAGEVFEPSAPGKGGSSTMPHKRNPVGAA 289
Query: 365 ALTMVCAQVIGNHVAITVG---------GSNGHFELNVFKPMIASGLLHSLRLLGDASAS 415
L A + ++ H E L L+ A
Sbjct: 290 VLI-GAATRVPGLLSTLFAAMPQEHERSLGLWHAEWET--------LPDICCLVSGALRQ 340
Query: 416 FEKNCVRGIQANRERISKLLH--------ESLMLVTSLNPKIG----YDNAAAVAKKAHK 463
+ G++ + R+ + L E++ + L ++G + ++A
Sbjct: 341 A-QVIAEGMEVDAARMRRNLDLTQGLVLAEAVSI--VLAQRLGRDRAHHLLEQCCQRAVA 397
Query: 464 EGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 497
E L+ L+ EE D L+ P +G +
Sbjct: 398 EQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQAR 435
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 111 bits (280), Expect = 9e-27
Identities = 73/342 (21%), Positives = 130/342 (38%), Gaps = 58/342 (16%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ + + ++ + +L + + +D GRTH Q A P+T G + + + + R
Sbjct: 118 DGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAAR 177
Query: 248 VICCLPRMYQLAQGGTAVGTGLNT-KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 306
+ PR+ + G A GT + +G DV +A E +L + +A DA
Sbjct: 178 LEEISPRVLVVEFSG-ASGTLASLGTRGLDV--QRELARELNLGVPSITW----HSARDA 230
Query: 307 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP------GSSIMPGKVNP 360
ET L V+ SL K+A D+ ++ LGE+ EP SS MP K NP
Sbjct: 231 VAETVQFLALVSGSLGKLAMDISIMM---TTELGEV----AEPFVRHRGASSTMPQKQNP 283
Query: 361 TQCEALTMVCAQVIGNHVAITVG---------GSNGHFELNVFKPMIASGLLHSLRLLGD 411
CE + A+++ NH + H E + + +
Sbjct: 284 VSCELIL-AGARIVRNHATSMLDAMIHDFERATGPWHLEWSA--------VPEGFAVASG 334
Query: 412 ASASFEKNCVRGIQANRERISKLLH--------ESLMLVTSLNPKIG----YDNAAAVAK 459
+ + G+Q +R+ + L E++M+ +L P G +D +
Sbjct: 335 ILYQA-EFMLGGLQVFPDRMRENLDHSRGLIVAEAVMM--ALAPHTGRKEAHDIVYLGCR 391
Query: 460 KAHKEGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 497
+A ++ T L + L E +L P +G +
Sbjct: 392 RAVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGSAG 433
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 100 bits (252), Expect = 4e-23
Identities = 70/338 (20%), Positives = 119/338 (35%), Gaps = 51/338 (15%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ N ++ +L+ + L +K+ E K + +GRTH A P T G + + ++K ++R
Sbjct: 119 QANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVER 178
Query: 248 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 307
+ G AVGT N D + V E L + D
Sbjct: 179 FKQAANTVRVGKLSG-AVGTYAN----IDPFVEKYVCENLGLEAAPISTQ---TLQRDRH 230
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 365
L +A S+ K+A ++R L + E+ + + GSS MP K NP E
Sbjct: 231 AHYMSTLALIATSIEKMAVEIRGLQ---KSETREVEEAFAKGQKGSSAMPHKRNPIGSEN 287
Query: 366 LTMVCAQVIGNHVAITV---------GGSNGHFELNVFKPMIASGLLHSLRLLGDASASF 416
+T A+VI ++ S+ E + P L + L
Sbjct: 288 MT-GLARVIRGYMMTAYENVPLWHERDISHSSAERVIL-PDATIALNYMLNRF------- 338
Query: 417 EKNCVRGIQANRERISK--------LLHESLMLVTSLNPK-IG----YDNAAAVAKKAHK 463
N V+ + E + + + + +ML +L K + YD A +A +
Sbjct: 339 -GNIVKNLTVYPENMKRNMTRTYGLIYSQRVML--TLIDKGMVREEAYDIVQPKAMEAWE 395
Query: 464 EGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 497
K+ L EE + E + D
Sbjct: 396 TQVQFKELVEADERITSKLTQEEINECFNYEHHMQHVD 433
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 97.4 bits (243), Expect = 5e-22
Identities = 73/338 (21%), Positives = 124/338 (36%), Gaps = 51/338 (15%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
E L+ +LK + L + +K IGRTH A P + G + G+ +++K + R
Sbjct: 107 EAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQR 166
Query: 248 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 307
+ + + G AVG N ++ L + + D
Sbjct: 167 LERAIEEVSYGKISG-AVGNYAN----VPPEVEEKALSYLGLKPEPVSTQ---VVPRDRH 218
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 365
L VAA + +IA ++R L R + E+ P + + GSS MP K NP CE
Sbjct: 219 AFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPITCER 275
Query: 366 LTMVCAQVIGNHVAITV---------GGSNGHFELNVFKPMIASGLLHSLRLLGDASASF 416
LT ++++ +V ++ S+ E VF P L + +
Sbjct: 276 LT-GLSRMMRAYVDPSLENIALWHERDISHSSVERYVF-PDATQTLYYMIVTA------- 326
Query: 417 EKNCVRGIQANRERISKLLH--------ESLMLVTSLNPK-IG----YDNAAAVAKKAHK 463
N VR ++ N ER+ K + + ++L L K + YD A K
Sbjct: 327 -TNVVRNMKVNEERMKKNIDLTKGLVFSQRVLL--KLIEKGLTRKEAYDIVQRNALKTWN 383
Query: 464 EGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 497
+ L+ ++ EE + L + D
Sbjct: 384 SEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKHVD 421
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 91.2 bits (227), Expect = 3e-20
Identities = 39/200 (19%), Positives = 64/200 (32%), Gaps = 26/200 (13%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ L L ++L + G T Q A +T+ +G+ ++ + R
Sbjct: 122 MAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLR 181
Query: 248 VICCLPRMYQLAQGGTAVGTGLNT-KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 306
+ + L GG A GT V + +A+ L + D
Sbjct: 182 LETFAQNGFALQFGG-AAGTLEKLGDNAGAV--RADLAKRLGLADRPQWH-----NQRDG 233
Query: 307 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP------GSSIMPGKVNP 360
E + L+ V +L K D+ L+ +E GSS MP K NP
Sbjct: 234 IAEFANLLSLVTGTLGKFGQDIALMAE-----------IGSEIRLSGGGGSSAMPHKQNP 282
Query: 361 TQCEALTMVCAQVIGNHVAI 380
E L + A+
Sbjct: 283 VNAETLVTLARFNAVQISAL 302
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 86.9 bits (216), Expect = 1e-18
Identities = 63/306 (20%), Positives = 117/306 (38%), Gaps = 39/306 (12%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ + + + + L S + ++K + +GRTH Q A P+TLG +F+ Y ++ +
Sbjct: 110 RALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQ 169
Query: 248 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 307
+ + GG AVGT + + +++ VAE LP + +A ++F
Sbjct: 170 -LALAEEFIRAKIGG-AVGTMASWGE-LGLEVRRRVAERLGLPHHVITTQ---VAPRESF 223
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALT 367
+ AL +AA ++A ++R L R +GE + E GSS MP K NPT E +
Sbjct: 224 AVLASALALMAAVFERLAVEIRELS---RPEIGE--VVEGGGGSSAMPHKANPTASERIV 278
Query: 368 MVCAQVIGNHVAITVG--------GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKN 419
+ V +N E P L L
Sbjct: 279 SLARYVRALTHVAFENVALWHERDLTNSANERVWI-PEALLALDEILTSA--------LR 329
Query: 420 CVRGIQANRERISKLLHESLMLVTS------LNPKIG-----YDNAAAVAKKAHKEGTTL 468
++ + + ERI++ L ++L + + + + Y A V +
Sbjct: 330 VLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWP 389
Query: 469 KDAALK 474
+ ++
Sbjct: 390 VERLIE 395
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 86.6 bits (215), Expect = 2e-18
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
++ S +I +L+ L +SL +K+ E K+I+ +GR+H A P++ GQ+F G + K +
Sbjct: 108 DSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKD 167
Query: 248 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 307
+ + G AVG + A+ LP + + D
Sbjct: 168 LKDFQKDGLTVQFSG-AVGNYCI----LTTEDEKKAADILGLPVEEVSTQ---VIPRDRI 219
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 365
+ +A+++ ++A ++R L R + E+ + + GSS MP K NP E
Sbjct: 220 AKLISIHGLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPISTEN 276
Query: 366 LT 367
LT
Sbjct: 277 LT 278
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 73.9 bits (181), Expect = 3e-14
Identities = 47/222 (21%), Positives = 77/222 (34%), Gaps = 14/222 (6%)
Query: 144 IANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNS 203
+ ++ E K +H S+ N+ +M I A+ + P + + S
Sbjct: 103 LQDKFQENEQLKSCVAFIH---FACTSEDINNLAYALM-IKQAIAQV--IQPTIAEIMGS 156
Query: 204 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGT 263
+ + D+ + RTH Q ATP T+G+E + + R L + A+
Sbjct: 157 ITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFV----ARLKRPQQQLAEVLIPAKFNG 212
Query: 264 AVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEA-LAAHDAFVETSGALNTVAASLM 322
AVG + + N + + HD E S + + L+
Sbjct: 213 AVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILL 272
Query: 323 KIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 364
D+ S G + E GSS MP KVNP E
Sbjct: 273 DYTQDIWSYIS---LGYFKQKTIAEEVGSSTMPHKVNPIDFE 311
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 73.5 bits (180), Expect = 4e-14
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 11/196 (5%)
Query: 170 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 229
S+ N+ +M A E ++P + L + L +V+++DI + RT Q ATP T
Sbjct: 123 SEDINNLSHALMLKTARDEV---ILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPST 179
Query: 230 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 289
+G+E + V Y ++R L ++ L + AVG + +EE
Sbjct: 180 IGKEMA----NVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVT 235
Query: 290 PFVTAENKFEA-LAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE 348
N + + HD E + L+ DV + + E
Sbjct: 236 SLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIAL---NHFKQKTIAGE 292
Query: 349 PGSSIMPGKVNPTQCE 364
GSS MP KVNP E
Sbjct: 293 IGSSTMPHKVNPIDFE 308
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 73.5 bits (181), Expect = 4e-14
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 30/202 (14%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
++ + + L + S++ K++V +GRTH Q A+ +T+G+ + ++ +
Sbjct: 127 ILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFR 186
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA--------- 303
+M G A GT + F + A + VT + F
Sbjct: 187 DKMRFRGIKG-ATGTQDSFLTLFAGDESKVEALDE---LVTKKANFSNRFLITGQTYSRQ 242
Query: 304 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP------GSSIMPGK 357
D+ + +L+ + A+ K+ D+R+L GEL EP GSS MP K
Sbjct: 243 QDSQLVF--SLSLLGAAAKKVCTDIRVL-----QAFGEL----LEPFEKDQIGSSAMPYK 291
Query: 358 VNPTQCEALTMVCAQVIGNHVA 379
NP + E + ++I
Sbjct: 292 KNPMKSERCCALSRKLINAPQE 313
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 73.1 bits (180), Expect = 6e-14
Identities = 43/202 (21%), Positives = 73/202 (36%), Gaps = 30/202 (14%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
L+P L + + L + E + +G TH Q A T+G+ + + + +
Sbjct: 153 LLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVR 212
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA--------- 303
+ G GT + + F+ + VT + F+
Sbjct: 213 DDLRFRGVKG-TTGTQASFLQLFEGDDHKVEQLDK---MVTEKAGFKRAFIITGQTYTRK 268
Query: 304 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP------GSSIMPGK 357
D V + L ++ AS+ KI D+RLL L E+ EP GSS MP K
Sbjct: 269 VDIEVLS--VLASLGASVHKICTDIRLL-----ANLKEM----EEPFEKQQIGSSAMPYK 317
Query: 358 VNPTQCEALTMVCAQVIGNHVA 379
NP + E + ++ +
Sbjct: 318 RNPMRSERCCSLARHLMTLVMD 339
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 70.3 bits (172), Expect = 4e-13
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 9/174 (5%)
Query: 193 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 252
+IP L+ + L +VE+ + + RTH Q A+ T G+E + + ++ + + +
Sbjct: 142 VIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVI---- 197
Query: 253 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE--TSLPFVTAENKFEALAAHDAFVET 310
R+ A+ AVG K +T + HD E
Sbjct: 198 RRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYICEL 257
Query: 311 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 364
L +L+ + D+ L S L +L + E E GSS MP KVNP E
Sbjct: 258 CDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNPIDFE 308
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 1e-08
Identities = 95/570 (16%), Positives = 161/570 (28%), Gaps = 197/570 (34%)
Query: 23 TLRYGACWRSYSTSFREEKDTFGPILVPSDKLWGAQTQRSLQ-NFDIGGERERMPEP--- 78
TL +G S LVP+ + +Q LQ F + +PEP
Sbjct: 10 TLSHG----SLEHVL----------LVPTA-SFFIASQ--LQEQF-----NKILPEPTEG 47
Query: 79 ------------IVRAFGILKKCAAKV-NMEYGLDPAIGKAIMQAA-QEVAEGKLND-HF 123
+V F L ++ V + G + + EG ND H
Sbjct: 48 FAADDEPTTPAELVGKF--LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG--NDIH- 102
Query: 124 PLVVWQTGSGTQSNMNANEVIAN--RAAEILGHKRGEKIVHPN---DHVNRS-------- 170
L + + E+I N A + R + V
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAK--RPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 171 --QSSN-----------DTFPTVMH--IAAAMETNSRLIPNLKVLHNSLHSKSVEFKD-I 214
Q + T+ ++ I + ET S LI + ++ + + +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA-EKVFTQGLNILEWL 219
Query: 215 VKIGRTHTQD-------ATPL-TLGQEFSGY-TTQVKYGIDRVICCLP-RMYQLAQGGTA 264
T +D + PL + Q + Y T G P + +G T
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFT------PGELRSYLKGATG 272
Query: 265 VGTGLNTKKGFDVKIASAVAEETSLP-FVTAENKF-EAL-----AAHDAFVETSGALNTV 317
GL T A A+AE S F + K L ++A+ TS + +
Sbjct: 273 HSQGLVT--------AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 318 AASL---------MKIANDVRLLGSG-PRCGLGELI------LPENEPGSSIMPGKVNPT 361
SL M L S + + + + LP +
Sbjct: 325 EDSLENNEGVPSPM-------LSISNLTQEQVQDYVNKTNSHLPAGK------------- 364
Query: 362 QCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCV 421
V I++ NG K ++ SG SL L + + K
Sbjct: 365 ---------------QVEISL--VNGA------KNLVVSGPPQSLYGL---NLTLRKAKA 398
Query: 422 R-GIQANR----ER----------ISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGT 466
G+ +R ER ++ H L+ + I D K
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL--VPASDLINKD--------LVKNNV 448
Query: 467 TLKDAALKLGVLNSEEFDNLVVPEKMIGPS 496
+ +++ V ++ + +L V I
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Score = 43.5 bits (102), Expect = 2e-04
Identities = 66/441 (14%), Positives = 123/441 (27%), Gaps = 142/441 (32%)
Query: 3 VYVISRRLLGG-GSTTSQLAGTLRYGACWRSYSTSFREEKDTFGPILVP-------SDKL 54
+ I GG G+T LR +++Y + L ++K+
Sbjct: 156 LVAI----FGGQGNTDDYFEE-LR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 55 WGAQTQRSLQNFDIGG---ERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAA 111
+ Q +I P+ L + ++ P IG ++Q A
Sbjct: 209 FT-------QGLNILEWLENPSNTPDK-----DYL--LSIPISC-----PLIG--VIQLA 247
Query: 112 QEVAEGKL-----NDHFPLVVWQTG-------------SGTQSNMNANEVIANRAAEIL- 152
V KL + + TG + + + + +A +L
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS---VRKAITVLF 304
Query: 153 -----GHKRGEKIVHPNDHVNRSQSSNDTFPTVM-------------HIAAAMETNSRLI 194
++ P + S +N+ P+ M ++ +TNS L
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN---KTNSHLP 361
Query: 195 PNLKV---LHN------------SLHSKSVEFKDIVKIGRTHTQDATP-----LTLGQEF 234
+V L N SL+ ++ + K Q P L F
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 235 --------SGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 286
S I++ + + V +T G D+++ S E
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLSGSISE 477
Query: 287 TSLPFVTAEN-KFEALAAHDA--FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI 343
+ + K+E A ++ G G GLG L
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILD---------------------FGPGGASGLGVLT 516
Query: 344 LPENEPGSS---IMPGKVNPT 361
N+ G+ I+ G ++
Sbjct: 517 H-RNKDGTGVRVIVAGTLDIN 536
Score = 39.6 bits (92), Expect = 0.003
Identities = 60/348 (17%), Positives = 96/348 (27%), Gaps = 123/348 (35%)
Query: 1 MAVYVISRRLLGG--GSTTSQLAGTLRYGA------------CWRSYSTSFREEKDTFGP 46
+A YV++ +LLG G S L G + W SF
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE----SFFVSVRKAIT 301
Query: 47 ILVPSDKLW-GAQTQRSLQNFDI----------GGERERMPEPIVRAFGI----LKKCAA 91
+L + G + + N + E P P++ + ++
Sbjct: 302 VL-----FFIGVRCYEAYPNTSLPPSILEDSLENNEGV--PSPMLSISNLTQEQVQDYVN 354
Query: 92 KVNMEYGLDPAIGKAIMQAAQEVAEGKL-N--DHFPLVVWQTGSGTQSNMNANEVIANRA 148
K N + E++ L N + VV +G QS N +
Sbjct: 355 KTNSHLPAGKQV---------EIS---LVNGAKNL--VV--SGP-PQSLYGLNLTLRKAK 397
Query: 149 AE-------ILGHKRGEKIVH-------PNDHVNRSQSS--NDTFPTVMHIAAAME---T 189
A I +R K + P H S +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPF-H-----SHLLVPASDLINKDLVKNNVSFN 451
Query: 190 NSRL-IP--------NLKVLHNSLH--------SKSVEFKDIVKIGRTHTQDATPLTLGQ 232
+ IP +L+VL S+ V+++ + TH D P
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA-- 509
Query: 233 EFSGY---TTQVK--YGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 275
SG T + K G+ RVI GT + + GF
Sbjct: 510 --SGLGVLTHRNKDGTGV-RVI----------VAGT-LDINPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 9e-07
Identities = 57/368 (15%), Positives = 99/368 (26%), Gaps = 110/368 (29%)
Query: 188 ETNSRLIPNLKVLHNSLHS--KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY-- 243
ET +L + + + KD+ QD L +E ++ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDV--------QDMPKSILSKE------EIDHII 55
Query: 244 -------GIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAEN 296
G R+ L Q V L F + S + E P +
Sbjct: 56 MSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRM 111
Query: 297 KFEALAAHDAFVETSGALNTVAASLMKIANDVRL-----LGSGPRCGLGELILPENEPGS 351
++E L K N RL L R L EL P
Sbjct: 112 ----------YIEQRDRLYNDNQVFAKY-NVSRLQPYLKL----RQALLEL-----RPAK 151
Query: 352 SI----MPG--KVNPTQCEALTMVCA-----QVIGNHVA-ITVGGSNGHFELNVFKPMIA 399
++ + G K AL VC + + + + N + +
Sbjct: 152 NVLIDGVLGSGK----TWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEML 202
Query: 400 SGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE-----SL--------------- 439
LL+ + + + N I + + + +LL L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 440 -----MLVTSLNPKIGYDNAAAVAKKA---HKEGTTLKDAALKL--GVLNSEEFDNLVVP 489
+L+T+ ++ +AA H T D L L+ D +P
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LP 319
Query: 490 EKM--IGP 495
++ P
Sbjct: 320 REVLTTNP 327
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.002
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 428 RERISKLLHESLMLVTSLNPKIGY--DNAAAVAKKAHKE 464
++ + KL ++ SL Y D+A A+A KA E
Sbjct: 19 KQALKKL--QA-----SLKL---YADDSAPALAIKATME 47
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 39.1 bits (92), Expect = 0.003
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 15/196 (7%)
Query: 188 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 247
+ S + +L L +L ++ D++ G TH Q A P+ Q + + +R
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 248 VICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTA-ENKFEALAAHD 305
+ R+ L G A+ G L+ + + E L F + N +A++ D
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREM-------LRSE--LEFASISLNSMDAISERD 239
Query: 306 AFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCE 364
VE + L K+A D+ + + G L L + G+S+MP K NP E
Sbjct: 240 FVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGASLMPQKKNPDSLE 296
Query: 365 ALTMVCAQVIGNHVAI 380
+ +V G +I
Sbjct: 297 LIRSKAGRVFGRLASI 312
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 37.5 bits (88), Expect = 0.008
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 192 RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 251
L+ + L ++L + +D V G TH Q A P+T Y + R+
Sbjct: 127 ELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDA 186
Query: 252 LPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVT-AENKFEALAAHDAFVE 309
L R+ G A+ GT + +A L F + N ++++ D +E
Sbjct: 187 LKRLDVSPLGCGALAGTAYEIDREQ-------LAGW--LGFASATRNSLDSVSDRDHVLE 237
Query: 310 TSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTM 368
A L + A D+ +G G + L + GSS+MP K NP E +
Sbjct: 238 LLSAAAIGMVHLSRFAEDLIFFNTGE---AGFVELSDRVTSGSSLMPQKKNPDALELIRG 294
Query: 369 VCAQVIGNHVAI 380
C +V G +
Sbjct: 295 KCGRVQGALTGM 306
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 37.2 bits (87), Expect = 0.011
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 17/194 (8%)
Query: 192 RLIPNLKVLHNSLHSKSVEFKDIVKI--GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVI 249
L+ L L L ++ + D + + G TH Q A P+ L F Y +K R+
Sbjct: 128 ELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLE 187
Query: 250 CCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVT-AENKFEALAAHDAF 307
R+ + G A+ GTG + F A E L F N +A+A+ D
Sbjct: 188 DAKERLNESPLGAAALAGTGFPIDRHF-------TARE--LGFKAPMRNSLDAVASRDFA 238
Query: 308 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEAL 366
+E ALN L ++A ++ L + G + +P+ GSSIMP K NP E +
Sbjct: 239 LEVLSALNIGMLHLSRMAEELILYSTEE---FGFVEVPDAFATGSSIMPQKKNPDILELI 295
Query: 367 TMVCAQVIGNHVAI 380
+V+G V +
Sbjct: 296 RAKAGRVLGAFVGL 309
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL
protein structure initiative, midwest center for
structural genomics, MCSG; 2.98A {Veillonella parvula}
Length = 349
Score = 29.9 bits (68), Expect = 1.9
Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 173 SNDTFPTVMHIAAAMET 189
+ND+ P MH+ +
Sbjct: 267 TNDSGP--MHVGISQGV 281
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 29.7 bits (67), Expect = 2.2
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 35/135 (25%)
Query: 207 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVK-----YGIDRVICCLPRMYQLAQG 261
K V + P G+++ Y +K + +L +
Sbjct: 409 KRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVW--------ELTRA 460
Query: 262 GTAVGTG---LN------TKKGFDVKIASAVAEETSLPFV------TAENKFEALAAHDA 306
A+G G LN + G+D+++ V + +P + E+ EA A
Sbjct: 461 CEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRA 520
Query: 307 FVETSGALNTVAASL 321
L A +
Sbjct: 521 ----DACL---GAGM 528
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 27.8 bits (63), Expect = 6.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 271 TKKGFDVKIASAVAEETSLP 290
TK G+D ++ V T+LP
Sbjct: 183 TKSGYDTEMIRFVRPLTTLP 202
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 27.9 bits (63), Expect = 7.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 271 TKKGFDVKIASAVAEETSLP 290
TK G+D ++ V T+LP
Sbjct: 183 TKSGYDTEMIRFVRPLTTLP 202
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix,
zinc-LESS finger, hydrolase, DNA DAMA repair,
DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis
thaliana} PDB: 3twm_A* 3twk_A
Length = 310
Score = 28.0 bits (63), Expect = 7.8
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 356 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF--ELNV 393
++ QCEAL +VI A+ V + F
Sbjct: 205 SSLSKEQCEALHTSIKEVIEK--AVEVDADSSQFPSNWIF 242
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 27.5 bits (62), Expect = 8.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 271 TKKGFDVKIASAVAEETSLP 290
TK G+D ++ V T+LP
Sbjct: 157 TKSGYDTEMIRFVRPLTTLP 176
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics,
NYSGXRC, LPS biosynthetic pathway, PSI, protein
structure initiative; 2.00A {Escherichia coli} SCOP:
c.87.1.7
Length = 348
Score = 27.7 bits (62), Expect = 8.9
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 173 SNDTFPTVMHIAAAMET 189
+ND+ MH+AAA+
Sbjct: 267 TNDSGL--MHVAAALNR 281
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 28.0 bits (63), Expect = 9.0
Identities = 4/36 (11%), Positives = 7/36 (19%), Gaps = 3/36 (8%)
Query: 256 YQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 291
L G G + + A +
Sbjct: 646 VTLGNSWEDHGQGADAGS---LGTAHEALRPLGITP 678
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,356,501
Number of extensions: 448679
Number of successful extensions: 983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 931
Number of HSP's successfully gapped: 45
Length of query: 497
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 399
Effective length of database: 3,965,535
Effective search space: 1582248465
Effective search space used: 1582248465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)