BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010909
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 181/493 (36%), Positives = 269/493 (54%), Gaps = 65/493 (13%)
Query: 27 APETALIAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGP 86
AP+ I ++PG + + YSGY+ S ++L Y+FVES+ +P PVVLWLNGGP
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 87 GCSSFDGFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKT 146
GCSS DG + EHGPF + L NPYSW +++++YL+SPAGVG SYS++K
Sbjct: 59 GCSSLDGLLTEHGPFLVQPDGV-----TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 113
Query: 147 DYVTGDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEK 206
Y T D + A L +F L+PE+ N F+ GESYAGIY+PTLA VM +
Sbjct: 114 -YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------QD 166
Query: 207 PVLNFKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLC----QGNFYNPLSE 262
P +N +G VGNG++ E + N+LV F + GL+ + L+ +Q C + NFY+
Sbjct: 167 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 226
Query: 263 ACDSKLSEVEKDI--AGLNMYDILEPCYHGNETWEIAAANIRLPSSFR---------QLG 311
C + L EV + + +GLN+Y++ PC G +PS FR LG
Sbjct: 227 ECVTNLQEVARIVGNSGLNIYNLYAPCAGG------------VPSHFRYEKDTVVVQDLG 274
Query: 312 ETDRPLPVRIRMFGRAWPLRAPVRDGIVPSWPQLLNSNSVPCTDDRVATLWLNDAAVRTA 371
LP++ RM+ +A LR+ + + P PCT+ A+ +LN+ VR A
Sbjct: 275 NIFTRLPLK-RMWHQAL-LRSGDKVRMDP-----------PCTNTTAASTYLNNPYVRKA 321
Query: 372 IHAEPESIAGSWELCTDRILFEHDA--GSM-IKYHKNLTLRGYRALIFSGDHDMCVPFTG 428
++ PE + W++C + ++ SM +Y K L+ + Y+ L+++GD DM F G
Sbjct: 322 LNI-PEQLP-QWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMG 379
Query: 429 SEAWTRSVGYKIVDKWRPW-----TSNGQVAGYTQGYENNLTFLTIKGAGHTVPEYKPRE 483
E + S+ K+ + RPW S Q+AG+ + + +++ FLTIKGAGH VP KP
Sbjct: 380 DEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEF-SHIAFLTIKGAGHMVPTDKPLA 438
Query: 484 ALDFYSRFLAGKP 496
A +SRFL +P
Sbjct: 439 AFTMFSRFLNKQP 451
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 176/316 (55%), Gaps = 42/316 (13%)
Query: 27 APETALIAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGP 86
AP+ I ++PG + + YSGY+ S ++L Y+FVES+ +P PVVLWLNGGP
Sbjct: 3 APDQDEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 87 GCSSFDGFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKT 146
GCSS DG + EHGPF + L NPYSW +++++YL+SPAGVG SYS++K
Sbjct: 61 GCSSLDGLLTEHGPFLVQPDGV-----TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 115
Query: 147 DYVTGDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEK 206
Y T D + A L +F L+PE+ N F+ GESYAGIY+PTLA VM +
Sbjct: 116 -YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------QD 168
Query: 207 PVLNFKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLC----QGNFYNPLSE 262
P +N +G VGNG++ E + N+LV F + GL+ + L+ +Q C + NFY+
Sbjct: 169 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 228
Query: 263 ACDSKLSEVEKDI--AGLNMYDILEPCYHGNETWEIAAANIRLPSSFR---------QLG 311
C + L EV + + +GLN+Y++ PC G +PS FR LG
Sbjct: 229 ECVTNLQEVARIVGNSGLNIYNLYAPCAGG------------VPSHFRYEKDTVVVQDLG 276
Query: 312 ETDRPLPVRIRMFGRA 327
LP++ RM+ +A
Sbjct: 277 NIFTRLPLK-RMWHQA 291
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 149/256 (58%), Gaps = 12/256 (4%)
Query: 33 IAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFD 92
IA++PG + YSGY+TVDE GR+LFY E+ + P+VLWLNGGPGCSS
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 93 -GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTD-YVT 150
G E G F + P G L +N Y W KV+++++LDSPAGVG SY+ +D Y +
Sbjct: 70 YGASEELGAFRVK-PAGAG----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 151 GDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLN 210
GD +TA D++ FL KWFE +P + F+IAGESYAG YVP L+ V + + PV+N
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVIN 180
Query: 211 FKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSE 270
KG++VGNG+ D+ D F G++SDD Y ++ C + + S ACD+
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDV 240
Query: 271 VEKDIAGLNMYDILEP 286
+ ++MY + P
Sbjct: 241 ATAEQGNIDMYSLYTP 256
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 149/256 (58%), Gaps = 12/256 (4%)
Query: 33 IAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFD 92
IA++PG + YSGY+TVDE GR+LFY E+ + P+VLWLNGGPGCSS
Sbjct: 6 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 64
Query: 93 -GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTD-YVT 150
G E G F + P G L +N Y W KV+++++LDSPAGVG SY+ +D Y +
Sbjct: 65 YGASEELGAFRVK-PRGAG----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 119
Query: 151 GDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLN 210
GD +TA D++ FL KWFE +P + F+IAGESYAG YVP L+ V + + PV+N
Sbjct: 120 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVIN 175
Query: 211 FKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSE 270
KG++VGNG+ D+ D F G++SDD Y ++ C + + S ACD+
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDV 235
Query: 271 VEKDIAGLNMYDILEP 286
+ ++MY + P
Sbjct: 236 ATAEQGNIDMYSLYTP 251
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 149/256 (58%), Gaps = 12/256 (4%)
Query: 33 IAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFD 92
IA++PG + YSGY+TVDE GR+LFY E+ + P+VLWLNGGPGCSS
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 93 -GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTD-YVT 150
G E G F + P G L +N Y W KV+++++LDSPAGVG SY+ +D Y +
Sbjct: 70 YGASEELGAFRVK-PRGAG----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 151 GDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLN 210
GD +TA D++ FL KWFE +P + F+IAGESYAG YVP L+ V + + PV+N
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVIN 180
Query: 211 FKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSE 270
KG++VGNG+ D+ D F G++SDD Y ++ C + + S ACD+
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDV 240
Query: 271 VEKDIAGLNMYDILEP 286
+ ++MY + P
Sbjct: 241 ATAEQGNIDMYSLYTP 256
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 149/256 (58%), Gaps = 12/256 (4%)
Query: 33 IAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFD 92
IA++PG + YSGY+TVDE GR+LFY E+ + P+VLWLNGGPGCSS
Sbjct: 7 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 65
Query: 93 -GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTD-YVT 150
G E G F + P G L +N Y W KV+++++LDSPAGVG SY+ +D Y +
Sbjct: 66 YGASEELGAFRVK-PRGAG----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 120
Query: 151 GDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLN 210
GD +TA D++ FL KWFE +P + F+IAGESYAG YVP L+ V + + PV+N
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR----SKNPVIN 176
Query: 211 FKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSE 270
KG++VGNG+ D+ D F G++SDD Y ++ C + + S ACD+
Sbjct: 177 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDV 236
Query: 271 VEKDIAGLNMYDILEP 286
+ ++MY + P
Sbjct: 237 ATAEQGNIDMYSLYTP 252
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 138/461 (29%), Positives = 207/461 (44%), Gaps = 72/461 (15%)
Query: 47 HYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFDGFIYEHGPFNFEAP 106
Y+GY+ V E ++ F++ ES +P+KDPV+LWLNGGPGCSS G +E G P
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELG------P 68
Query: 107 TTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTDYVTGDLKTASDTHTFLLKW 166
++ G K NPYSW +++I+LD P VG SYS + V+ + D + FL +
Sbjct: 69 SSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG--VSNTVAAGKDVYNFLELF 126
Query: 167 FELYPEFL--ANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLNFKGYLVGNGVTDEE 224
F+ +PE++ F IAGESYAG Y+P A E++ D N L+GNG+TD
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDPL 182
Query: 225 IDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSEVEKDIAGLNMYDIL 284
N P G G G SE C + +E+ + ++
Sbjct: 183 TQYNYYEPMACGEG---------------GEPSVLPSEECSAMEDSLERCLG------LI 221
Query: 285 EPCYHGNETWEIAAANIRLPSSFRQLGETDRPLPVRIRMFGR-AWPLRAPVRDGIVPSWP 343
E CY W A I ++ QL R GR + +R G + +P
Sbjct: 222 ESCYDSQSVWSCVPATIYCNNA--QLAPYQRT--------GRNVYDIRKDCEGGNL-CYP 270
Query: 344 QLLNSNSVPCTDDRVATLWLNDAAVRTAIHAEPESIAGSWELCTDRILFEHDAGSMIKYH 403
L + DD +LN V+ A+ AE + LF D M YH
Sbjct: 271 TLQD------IDD-----YLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDW--MKPYH 317
Query: 404 ---KNLTLRGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVD-----KWRPWTSN--GQV 453
+L + L+++GD D + G++AWT + +K + K R WT++ +V
Sbjct: 318 TAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEV 377
Query: 454 AGYTQGYENNLTFLTIKGAGHTVPEYKPREALDFYSRFLAG 494
AG + Y+ + T+L + GH VP P AL + ++ G
Sbjct: 378 AGEVKSYK-HFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 136/461 (29%), Positives = 205/461 (44%), Gaps = 72/461 (15%)
Query: 47 HYSGYVTVDESHGRNLFYYFVESEGNPSKDPVVLWLNGGPGCSSFDGFIYEHGPFNFEAP 106
Y+GY+ V E ++ F++ ES +P+KDPV+LWLNGGPGCSS G + G P
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALG------P 68
Query: 107 TTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKTDYVTGDLKTASDTHTFLLKW 166
++ G K NPYSW +++I+LD P VG SYS + V+ + D + FL +
Sbjct: 69 SSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSG--VSNTVAAGKDVYNFLELF 126
Query: 167 FELYPEFL--ANPFFIAGESYAGIYVPTLAYEVMKGIDAGEKPVLNFKGYLVGNGVTDEE 224
F+ +PE++ F IAG SYAG Y+P A E++ D N L+GNG+TD
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDPL 182
Query: 225 IDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDSKLSEVEKDIAGLNMYDIL 284
N P G G G SE C + +E+ + ++
Sbjct: 183 TQYNYYEPMACGEG---------------GEPSVLPSEECSAMEDSLERCLG------LI 221
Query: 285 EPCYHGNETWEIAAANIRLPSSFRQLGETDRPLPVRIRMFGR-AWPLRAPVRDGIVPSWP 343
E CY W A I ++ QL R GR + +R G + +P
Sbjct: 222 ESCYDSQSVWSCVPATIYCNNA--QLAPYQRT--------GRNVYDIRKDCEGGNL-CYP 270
Query: 344 QLLNSNSVPCTDDRVATLWLNDAAVRTAIHAEPESIAGSWELCTDRILFEHDAGSMIKYH 403
L + DD +LN V+ A+ AE + LF D M YH
Sbjct: 271 TLQD------IDD-----YLNQDYVKEAVGAEVDHYESCNFDINRNFLFAGDW--MKPYH 317
Query: 404 ---KNLTLRGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVD-----KWRPWTSN--GQV 453
+L + L+++GD D + G++AWT + +K + K R WT++ +V
Sbjct: 318 TAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEV 377
Query: 454 AGYTQGYENNLTFLTIKGAGHTVPEYKPREALDFYSRFLAG 494
AG + Y+ + T+L + GH VP P AL + ++ G
Sbjct: 378 AGEVKSYK-HFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 141/260 (54%), Gaps = 11/260 (4%)
Query: 29 ETALIAQIPGFSGNLPSKHYSGYVTVDESHGRNLFYYFVESEGNPSKDP-VVLWLNGGPG 87
E I +PG + Y GYVT+D+++GR L+Y+F E++ +VLWLNGGPG
Sbjct: 6 EDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPG 65
Query: 88 CSSFD-GFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLSYSENKT 146
CSS G + E G F T G L +N Y+W K ++I++ +SPAGVG SYS +
Sbjct: 66 CSSIGLGAMQELGAFRVH---TNGE--SLLLNEYAWNKAANILFAESPAGVGFSYSNTSS 120
Query: 147 DYVTGDLKTASDTHTFLLKWFELYPEFLANPFFIAGESYAGIYVPTLAYEVMKGIDAGEK 206
D GD K A DT+TFL+KWFE +P + F+IAGES G ++P L+ V + +
Sbjct: 121 DLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYR--NRNNS 176
Query: 207 PVLNFKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNLCQGNFYNPLSEACDS 266
P +NF+G LV +G+T++ D + GLISD+ + +C G + + C
Sbjct: 177 PFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTE 236
Query: 267 KLSEVEKDIAGLNMYDILEP 286
++ + +N Y I P
Sbjct: 237 VWNKALAEQGNINPYTIYTP 256
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 199/498 (39%), Gaps = 87/498 (17%)
Query: 36 IPGFS-----GNLPSKHYSGYV-----TVDESHGRNLFYYF-----VESEGNPSKDPVVL 80
+PG S N+P H +G++ DE +L Y+F +S GN + P+++
Sbjct: 14 LPGLSEVPDPSNIPQMH-AGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDR-PLII 71
Query: 81 WLNGGPGCSSFDGFIYEHGPFNFEAPTTKGSLPKLHVNPYSWTKVSSIIYLDSPAGVGLS 140
WLNGGPGCSS DG + E GPF + KL++N SW ++++D P G G S
Sbjct: 72 WLNGGPGCSSMDGALVESGPFRVNSDG------KLYLNEGSWISKGDLLFIDQPTGTGFS 125
Query: 141 YSENKTDYVTGDLKTASDTH-------TFLLKWFELYPEFLANPFFIAGESYAGIYVPTL 193
+NK + K D FL +F+++PE L ++GESYAG Y+P
Sbjct: 126 VEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFF 185
Query: 194 AYEVM--KGIDAGEKPVLNFKGYLVGNGVTDEEIDGNALVPFVHGMGLISDDLYEEVQNL 251
A ++ + + K L+GNG D + +PF LI D+ ++L
Sbjct: 186 ANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLI-DESNPNFKHL 244
Query: 252 CQGNFYNPLSEACDSKLSEVEKDIAGLNMYDILEPCYHGNETWEIAAANIRLPSSFRQLG 311
+ E C + ++ D A Y E I + Q G
Sbjct: 245 TNAH------ENCQNLINSASTDEAAHFSY---------QECENILNLLLSYTRESSQKG 289
Query: 312 ETDRPLPVRIRMFGRAWPLRAPVRDGIVPSWPQLLNSNSVPCTDDRVATLWLNDAAVRTA 371
D + M+ P +WP+ D + + + V +
Sbjct: 290 TAD-----CLNMYNFNLKDSYP---SCGMNWPK----------DISFVSKFFSTPGVIDS 331
Query: 372 IHAEPESIAGSWELCTDRI---LFEHDAGSMIKYHKNLTLRGYRALIFSGDHDMCVPFTG 428
+H + + I W+ CT+ + L + I L G ++F+GD D+ G
Sbjct: 332 LHLDSDKI-DHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKDLICNNKG 390
Query: 429 ------SEAW-------TRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLTIKGAGHT 475
+ W +V + + K + + + +GY + Y+ NLTF+++ A H
Sbjct: 391 VLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVK-YDRNLTFVSVYNASHM 449
Query: 476 VPEYK---PREALDFYSR 490
VP K R +D YS
Sbjct: 450 VPFDKSLVSRGIVDIYSN 467
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 352 PCTDDRVATLWLNDAAVRTAIHAEPE-SIAGSWELCTDRI-LFEHDA-GSMIKYHKNLTL 408
PCT+ R +T + N V+ A+HA ++ +W C+D I HDA SM+ ++ L
Sbjct: 4 PCTE-RYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 409 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLT 468
G R +FSGD D VP T + ++G W PW + +V G++Q Y+ LT ++
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYK-GLTLVS 121
Query: 469 IKGAGHTVPEYKPREALDFYSRFLAGKPL 497
++GAGH VP ++PR+AL + FL GKP+
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 352 PCTDDRVATLWLNDAAVRTAIHAEPE-SIAGSWELCTDRI-LFEHDA-GSMIKYHKNLTL 408
PCT+ R +T + N V+ A+HA ++ +W C+D I HDA SM+ ++ L
Sbjct: 4 PCTE-RYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 409 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLT 468
G R +FSGD D VP T + ++G W PW + +V G++Q Y+ LT ++
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYK-GLTLVS 121
Query: 469 IKGAGHTVPEYKPREALDFYSRFLAGKPL 497
++GAGH VP ++PR+AL + FL GKP+
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 352 PCTDDRVATLWLNDAAVRTAIHAEPE-SIAGSWELCTDRI-LFEHDA-GSMIKYHKNLTL 408
PCT+ R +T + N V+ A+HA ++ +W C+D I HDA SM+ ++ L
Sbjct: 4 PCTE-RYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 409 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLT 468
G R +FSGD D VP T + ++G W PW + +V G++Q Y+ LT ++
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYK-GLTLVS 121
Query: 469 IKGAGHTVPEYKPREALDFYSRFLAGKPL 497
++GAGH VP ++PR+AL + FL GKP+
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPM 150
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 352 PCTDDRVATLWLNDAAVRTAIHAEPE-SIAGSWELCTDRI-LFEHDA-GSMIKYHKNLTL 408
PCT+ R +T + N V+ A+HA ++ +W C+D I HDA SM+ ++ L
Sbjct: 6 PCTE-RYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 409 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWTSNGQVAGYTQGYENNLTFLT 468
G R +FSGD D VP T + ++G W PW + +V G++Q Y+ LT ++
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYK-GLTLVS 123
Query: 469 IKGAGHTVPEYKPREALDFYSRFLAGKPL 497
++GAGH VP ++PR+AL + FL GKP+
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPM 152
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 11/153 (7%)
Query: 352 PCTDDRVATLWLNDAAVRTAIHAEPESIAGSWELCTDRILFEHDA--GSM-IKYHKNLTL 408
PCT+ A+ +LN+ VR A++ PE + W++C + ++ SM +Y K L+
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNI-PEQLP-QWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 409 RGYRALIFSGDHDMCVPFTGSEAWTRSVGYKIVDKWRPWT-----SNGQVAGYTQGYENN 463
+ Y+ L+++GD DM F G E + S+ K+ + RPW S Q+AG+ + + ++
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEF-SH 120
Query: 464 LTFLTIKGAGHTVPEYKPREALDFYSRFLAGKP 496
+ FLTIKGAGH VP KP A +SRFL +P
Sbjct: 121 IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 362 WLNDAAVRTAIHAEPESIAG-SWELCTDRIL--FEHDAGSMIKYHKNLTLRGYRALIFSG 418
+LN V+TA+HA I W +C++ I + A ++ ++ L G R ++SG
Sbjct: 15 YLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQAGLRVWVYSG 74
Query: 419 DHDMCVPFTGSEAWTRSVGYKIVDKWRPW---TSNGQVAGYTQGYENNLTFLTIKGAGHT 475
D D VP + + ++ + W PW + +V G++ YE LT++T++GAGH
Sbjct: 75 DTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEG-LTYVTVRGAGHL 133
Query: 476 VPEYKPREALDFYSRFLAGKPL 497
VP ++P +A + +FL G+P+
Sbjct: 134 VPVHRPAQAFLLFKQFLKGEPM 155
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 276 AGLNMYDILEPCYHGNETWEIAAANIRLPSSFRQLG-ETDRPLPVRIRMFGRA 327
AGL+ Y +LE C+ G E W +A ++ + F G TD + VR++ A
Sbjct: 37 AGLDGY-VLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAA 88
>pdb|2KP6|A Chain A, Solution Nmr Structure Of Protein Cv0237 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium (Nesg) Target Cvt1
Length = 82
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 299 ANIRLPSSFRQLGETDRPLPVRIRMFGRAWPLRAPVRDGIVPSW 342
+N LP FRQLG D P +R + P R P+ + P W
Sbjct: 7 SNHLLPGLFRQLGLEDEPAAIRAFIDSHPLPPRVPLPEA--PFW 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,329,883
Number of Sequences: 62578
Number of extensions: 827502
Number of successful extensions: 1670
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1601
Number of HSP's gapped (non-prelim): 26
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)