BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010910
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 134/283 (47%), Gaps = 28/283 (9%)
Query: 124 YLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAA 183
Y+ + + L +++ KL L++ + + + +L QKC +L+ L+ + +GD+GL
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLY-ALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEV 336
Query: 184 VGKVCNQLEDLNLRFC---------EGL-TDTGLVDLAHGCGKSLKSLGIAACVKITDVS 233
+ + C QL+ L + EGL + GL+ LA GC + L+ + + IT+ S
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAVYVS-DITNES 394
Query: 234 LEAVGSHCKSL---ETLSLDSE-----FIHNKGVHAVAQGCPLLR--VLKLQCINVTDEA 283
LE++G++ K+L + LD E + GV ++ GC LR L+ +TD
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454
Query: 284 LVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGC 343
L +G ++ + L + +D+GL +GC L+ L + C F S+ + A T
Sbjct: 455 LSYIGQYSPNVRWM-LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERAIAAAVTKL 512
Query: 344 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNL 386
L +L + G +M + + + R + L+ +R+ +
Sbjct: 513 PSLRYLWVQGYR--ASMTGQDLMQMARPYWNIELIPSRRVPEV 553
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 126/509 (24%), Positives = 206/509 (40%), Gaps = 117/509 (22%)
Query: 13 DEVILEIFRHLDSKASRDACSLVCXXXXXXXXXXXXXXXIG--ASGSPDLFVKLLSRRFA 70
D+VI ++ ++ RD+ SLVC + + +PD LSRRF
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDR----LSRRFP 73
Query: 71 NVKSIHIDERLSVS----IPVQHGRRRGDQSKLSALQLHYLTK---KTGSEDGQFQSESY 123
N++S+ + + + IP G Y+T + + Q +S +
Sbjct: 74 NLRSLKLKGKPRAAMFNLIPENWG--------------GYVTPWVTEISNNLRQLKSVHF 119
Query: 124 ---YLSDSGLNALADGFSK-LEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQ 179
+SD L+ LA + LE L L CS ++ GL+S+ C +K+L ++ ++
Sbjct: 120 RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179
Query: 180 ---GLAAVGKVCNQLEDLNLRFCE--GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVS- 233
L + + LE LN E ++ L +A C +SL S VK+ D
Sbjct: 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVS------VKVGDFEI 232
Query: 234 LEAVG--SHCKSLETL---SLDSEF-IHNKGVHAV--------------AQGCPLL---- 269
LE VG +LE SL+ + + K ++ V P+L
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292
Query: 270 ---RVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLS 326
R L L + E + +C +LE+L + D+GL + + CK+LK L +
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIE 350
Query: 327 ----------DCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 376
+ +S GL A+A GC+EL ++ + +I LESIG + +NL +
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFR 409
Query: 377 LLYC---QRIGNLALLEVGR----GCKSLQ--ALHL-------VDCSSIG---------- 410
L+ +RI +L L R GCK L+ A +L + S IG
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469
Query: 411 -------DDAICSIAEGCQNLKKLHIRRC 432
D+ + + GC NL+KL +R C
Sbjct: 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGC 498
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 119/534 (22%), Positives = 195/534 (36%), Gaps = 98/534 (18%)
Query: 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCXXXXXXXXXXXXXXXIG--ASGSPDLF 61
RI P+EV+ +F + R++ SLVC IG + SP
Sbjct: 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATV 61
Query: 62 VKLLSRRFANVKSIHIDERLSVS----IPVQHGRRRGDQSKLSALQLHYLTKKTGSEDGQ 117
+ RRF V+S+ + + + +P G + + +L +
Sbjct: 62 I----RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE--------E 109
Query: 118 FQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVG 177
+ + ++D L +A F + L L C S+ GL ++A C +LK LDL+ V
Sbjct: 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169
Query: 178 D---QGLAAVGKVCNQLEDLNLR-FCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDV- 232
D L+ L LN+ ++ + L L C +LKSL + V + +
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-PNLKSLKLNRAVPLEKLA 228
Query: 233 SLEAVGSHCKSLETLSLDSEFIHN--KGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQ 290
+L + L T +E + G+ GC LR L + L AV +
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSV 287
Query: 291 CLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLE 350
C L L L S+ L + C KL+ L + D ++ D GLE +A+ CK+L L
Sbjct: 288 CSRLTTLNL-SYATVQSYDLVKLLCQCPKLQRLWVLD--YIEDAGLEVLASTCKDLRELR 344
Query: 351 INGCH------------------NIGTMGLESIGKFCRNLTELALLYCQR---------- 382
+ ++G LES+ FCR +T AL+ R
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404
Query: 383 -----------------IGNLALLE---------------------VGRGCKSLQALHLV 404
IG A++E +G K ++ L V
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS-V 463
Query: 405 DCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458
+ D + + GC +L+KL IR C G+ ++A ++ L + C
Sbjct: 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSC 516
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 409 IGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459
+ DD + IA+ +N K L + C +G+ A+ C +L EL LR D
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 5/176 (2%)
Query: 233 SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292
+L + S C L+ LSL+ + + V+ +A+ L+R+ C ++ AL + + C
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168
Query: 293 SLELLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLE 350
L+ L L FT+K + AV + + L LS L L + C L HL+
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 351 INGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLV 404
++ + + + L L+L C I LLE+G K+LQ +V
Sbjct: 229 LSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 283
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 36/188 (19%)
Query: 121 ESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180
E LSD +N LA S L +L+L CS S L +L C
Sbjct: 126 EGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSC----------------- 167
Query: 181 LAAVGKVCNQLEDLNLRFCEGLTDTGL-VDLAHGCGKSLKSLGIAACVK-ITDVSLEAVG 238
++L++LNL +C T+ + V +AH +++ L ++ K + L +
Sbjct: 168 --------SRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLV 218
Query: 239 SHCKSLETLSL-DSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297
C +L L L DS + N Q L + +C ++ E L+ +G E+
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG------EIP 272
Query: 298 ALYSFQQF 305
L + Q F
Sbjct: 273 TLKTLQVF 280
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 5/176 (2%)
Query: 233 SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292
+L + S C L+ LSL+ + + V+ +A+ L+R+ C ++ AL + + C
Sbjct: 71 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 130
Query: 293 SLELLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLE 350
L+ L L FT+K + AV + + L LS L L + C L HL+
Sbjct: 131 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 190
Query: 351 INGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLV 404
++ + + + L L+L C I LLE+G K+LQ +V
Sbjct: 191 LSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 245
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 165 HLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGL-VDLAHGCGKSLKSLG 222
+L L+L GC + L + C++L++LNL +C T+ + V +AH +++ L
Sbjct: 105 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLN 163
Query: 223 IAACVK-ITDVSLEAVGSHCKSLETLSL-DSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280
++ K + L + C +L L L DS + N Q L + +C ++
Sbjct: 164 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 223
Query: 281 DEALVAVGNQCLSLELLALYSFQQF 305
E L+ +G E+ L + Q F
Sbjct: 224 PETLLELG------EIPTLKTLQVF 242
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 19/242 (7%)
Query: 124 YLSDSGLNALADGF---SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180
+LS+S +N GF + L L L S + ++ C LK L++ + G
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 181 LAAVGKVCNQLE--DLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238
+ G N LE DL+ G G V L+ GCG+ LK L I+ DV +
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWV-LSDGCGE-LKHLAISGNKISGDVDV---- 193
Query: 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLA 298
S C +LE L + S + G+ + C L+ L + ++ + A+ + C L+LL
Sbjct: 194 SRCVNLEFLDVSSNNF-STGIPFLGD-CSALQHLDISGNKLSGDFSRAI-STCTELKLLN 250
Query: 299 LYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358
+ S QF K L+ L+L++ F ++ + ++ C LT L+++G H G
Sbjct: 251 ISS-NQFVGP---IPPLPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYG 305
Query: 359 TM 360
+
Sbjct: 306 AV 307
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 19/242 (7%)
Query: 124 YLSDSGLNALADGF---SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180
+LS+S +N GF + L L L S + ++ C LK L++ + G
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 181 LAAVGKVCNQLE--DLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238
+ G N LE DL+ G G V L+ GCG+ LK L I+ DV +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWV-LSDGCGE-LKHLAISGNKISGDVDV---- 196
Query: 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLA 298
S C +LE L + S G+ + C L+ L + ++ + A+ + C L+LL
Sbjct: 197 SRCVNLEFLDVSSNNFS-TGIPFLGD-CSALQHLDISGNKLSGDFSRAI-STCTELKLLN 253
Query: 299 LYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358
+ S QF K L+ L+L++ F ++ + ++ C LT L+++G H G
Sbjct: 254 ISS-NQFVGP---IPPLPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYG 308
Query: 359 TM 360
+
Sbjct: 309 AV 310
>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 384
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 358 GTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDA 413
G +G I + RN+ E+ CQ +G L +++G L A LV+C + ++
Sbjct: 275 GELGETQILQIPRNVLEMTF-ECQNLGKLTTVQIGHDNSGLYAKWLVECVMVRNEV 329
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 107 LTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLI-------------------- 146
L +T S+ + ++ ++ L L D F +LE LS I
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLE 70
Query: 147 WCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200
N S GL LA+KC +L L+L G + D K L+ L+L CE
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 335 GLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQ 381
GLE +A C LTHL ++G +E + K NL L L C+
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCE 124
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 159 LAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG-LTDT 205
++C K+ ++ VG GL A G++C + LR C G L DT
Sbjct: 137 FVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDT 184
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 159 LAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG-LTDT 205
++C K+ ++ VG GL A G++C + LR C G L DT
Sbjct: 137 FVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDT 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,428,475
Number of Sequences: 62578
Number of extensions: 525402
Number of successful extensions: 954
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 37
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)