Query 010910
Match_columns 497
No_of_seqs 283 out of 3167
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 05:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 4.3E-35 9.3E-40 257.2 14.4 380 7-477 71-456 (483)
2 KOG4341 F-box protein containi 100.0 1.2E-28 2.6E-33 216.9 10.7 285 165-474 139-427 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 5.3E-26 1.2E-30 191.4 11.5 290 9-374 99-391 (419)
4 KOG2120 SCF ubiquitin ligase, 99.7 3.3E-17 7.2E-22 138.8 10.2 212 269-486 187-400 (419)
5 cd00116 LRR_RI Leucine-rich re 99.7 3.6E-15 7.9E-20 139.2 24.3 276 151-457 10-316 (319)
6 PLN00113 leucine-rich repeat r 99.7 1.2E-16 2.5E-21 171.2 14.2 223 240-477 234-459 (968)
7 KOG4194 Membrane glycoprotein 99.7 1.7E-18 3.7E-23 159.5 -2.4 311 162-493 147-463 (873)
8 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-14 3.6E-19 134.7 23.5 284 119-433 4-318 (319)
9 PLN00113 leucine-rich repeat r 99.7 9.3E-16 2E-20 164.4 14.1 318 134-477 89-411 (968)
10 KOG1947 Leucine rich repeat pr 99.6 2.4E-15 5.3E-20 149.0 14.0 283 163-471 160-450 (482)
11 KOG4194 Membrane glycoprotein 99.6 4.5E-17 9.7E-22 150.2 -1.2 319 136-479 100-425 (873)
12 KOG1909 Ran GTPase-activating 99.5 8.6E-14 1.9E-18 121.1 11.1 277 155-471 21-322 (382)
13 KOG1947 Leucine rich repeat pr 99.5 1E-13 2.2E-18 137.5 11.9 169 290-471 241-424 (482)
14 PLN03210 Resistant to P. syrin 99.5 1.3E-13 2.8E-18 148.3 11.5 287 119-436 612-907 (1153)
15 PLN03210 Resistant to P. syrin 99.4 1E-12 2.2E-17 141.5 11.4 270 162-463 632-908 (1153)
16 KOG0444 Cytoskeletal regulator 99.3 6.4E-14 1.4E-18 130.9 -7.5 106 241-353 149-254 (1255)
17 KOG0444 Cytoskeletal regulator 99.2 2.2E-13 4.7E-18 127.5 -4.8 323 125-477 19-369 (1255)
18 KOG1909 Ran GTPase-activating 99.2 6.9E-10 1.5E-14 97.2 14.9 113 187-301 90-222 (382)
19 KOG3207 Beta-tubulin folding c 99.2 8.4E-12 1.8E-16 112.0 3.0 212 160-378 117-334 (505)
20 KOG3207 Beta-tubulin folding c 99.1 2.5E-11 5.5E-16 109.0 2.9 207 136-353 119-335 (505)
21 PF12937 F-box-like: F-box-lik 99.1 4.6E-11 9.9E-16 75.1 2.0 43 9-52 2-44 (47)
22 KOG3665 ZYG-1-like serine/thre 98.9 1.3E-08 2.8E-13 102.0 11.2 156 216-376 122-281 (699)
23 KOG0618 Serine/threonine phosp 98.9 1.8E-10 3.8E-15 113.1 -2.2 283 164-473 219-503 (1081)
24 KOG2982 Uncharacterized conser 98.8 1.1E-09 2.3E-14 93.8 1.7 195 232-433 61-260 (418)
25 PRK15387 E3 ubiquitin-protein 98.8 6.1E-09 1.3E-13 104.8 5.4 267 138-471 201-467 (788)
26 KOG3665 ZYG-1-like serine/thre 98.8 3.6E-08 7.8E-13 98.9 10.6 160 292-458 122-285 (699)
27 PRK15387 E3 ubiquitin-protein 98.6 3.4E-08 7.3E-13 99.6 6.0 244 138-443 222-465 (788)
28 smart00256 FBOX A Receptor for 98.6 2.4E-08 5.1E-13 61.0 2.9 38 11-49 1-38 (41)
29 PF00646 F-box: F-box domain; 98.6 1.8E-08 4E-13 63.8 1.4 40 9-49 4-43 (48)
30 COG5238 RNA1 Ran GTPase-activa 98.6 1.8E-06 3.9E-11 73.5 13.2 259 158-437 24-317 (388)
31 KOG2982 Uncharacterized conser 98.5 2.2E-07 4.8E-12 79.9 5.5 207 165-380 46-259 (418)
32 PF14580 LRR_9: Leucine-rich r 98.4 1.3E-07 2.8E-12 77.6 3.0 129 318-458 19-150 (175)
33 KOG0618 Serine/threonine phosp 98.4 4.9E-08 1.1E-12 96.5 -1.3 218 243-480 242-486 (1081)
34 COG5238 RNA1 Ran GTPase-activa 98.3 2.5E-05 5.4E-10 66.7 13.7 215 240-458 28-282 (388)
35 KOG3864 Uncharacterized conser 98.3 8.3E-07 1.8E-11 72.2 4.6 105 346-453 103-209 (221)
36 PF14580 LRR_9: Leucine-rich r 98.3 4.9E-07 1.1E-11 74.2 2.8 39 241-279 87-125 (175)
37 PRK15370 E3 ubiquitin-protein 98.2 4.1E-06 9E-11 85.2 9.3 119 138-280 178-296 (754)
38 PRK15370 E3 ubiquitin-protein 98.2 7.9E-06 1.7E-10 83.2 9.6 259 164-472 178-438 (754)
39 KOG4658 Apoptotic ATPase [Sign 98.1 1.5E-06 3.2E-11 89.9 3.3 108 136-252 543-652 (889)
40 KOG4237 Extracellular matrix p 98.1 4.8E-07 1.1E-11 81.0 -0.9 109 162-278 64-175 (498)
41 KOG3864 Uncharacterized conser 98.1 2.9E-06 6.2E-11 69.1 3.4 92 371-465 102-193 (221)
42 KOG1259 Nischarin, modulator o 98.1 1.4E-06 3E-11 75.3 1.2 36 240-277 212-247 (490)
43 KOG4237 Extracellular matrix p 98.1 6.3E-07 1.4E-11 80.3 -0.9 138 130-278 58-199 (498)
44 KOG1259 Nischarin, modulator o 98.0 1.6E-06 3.4E-11 74.9 0.5 127 239-379 281-408 (490)
45 KOG0472 Leucine-rich repeat pr 97.8 1.7E-06 3.7E-11 77.8 -3.1 108 341-459 432-539 (565)
46 KOG4658 Apoptotic ATPase [Sign 97.5 3.3E-05 7.2E-10 80.2 1.9 107 162-277 543-652 (889)
47 KOG0472 Leucine-rich repeat pr 97.5 2E-05 4.3E-10 71.1 -0.1 111 314-436 431-541 (565)
48 KOG1859 Leucine-rich repeat pr 97.2 2.6E-05 5.7E-10 75.8 -3.3 137 130-280 76-222 (1096)
49 smart00367 LRR_CC Leucine-rich 97.1 0.00042 9.1E-09 36.8 2.0 24 447-470 1-24 (26)
50 KOG4308 LRR-containing protein 97.0 0.0011 2.5E-08 64.1 5.8 324 140-474 89-457 (478)
51 KOG1859 Leucine-rich repeat pr 97.0 6.1E-05 1.3E-09 73.3 -2.9 39 216-255 84-122 (1096)
52 KOG4308 LRR-containing protein 96.8 0.001 2.2E-08 64.4 3.1 63 218-281 89-158 (478)
53 smart00367 LRR_CC Leucine-rich 96.6 0.0028 6E-08 33.6 2.8 24 421-444 1-24 (26)
54 KOG0617 Ras suppressor protein 96.5 4.9E-05 1.1E-09 60.3 -6.4 128 317-458 55-183 (264)
55 KOG2997 F-box protein FBX9 [Ge 96.3 0.0026 5.7E-08 55.8 2.5 42 9-51 108-154 (366)
56 KOG2123 Uncharacterized conser 96.3 0.0015 3.3E-08 56.4 0.9 103 317-428 18-123 (388)
57 PF13855 LRR_8: Leucine rich r 96.2 0.00027 5.9E-09 47.1 -3.1 37 420-458 23-59 (61)
58 PF13855 LRR_8: Leucine rich r 96.2 0.00092 2E-08 44.6 -0.7 59 138-199 1-59 (61)
59 PF12799 LRR_4: Leucine Rich r 96.1 0.007 1.5E-07 36.9 3.0 38 422-463 1-38 (44)
60 PLN03215 ascorbic acid mannose 96.1 0.0041 9E-08 57.4 2.8 36 9-44 5-40 (373)
61 KOG0281 Beta-TrCP (transducin 96.1 0.0026 5.7E-08 56.2 1.3 48 4-53 72-123 (499)
62 PRK15386 type III secretion pr 96.0 0.013 2.9E-07 54.8 5.8 139 160-328 48-187 (426)
63 KOG2739 Leucine-rich acidic nu 96.0 0.00094 2E-08 57.3 -1.7 14 266-279 90-103 (260)
64 PRK15386 type III secretion pr 96.0 0.011 2.5E-07 55.3 5.2 15 240-254 50-64 (426)
65 KOG0617 Ras suppressor protein 96.0 7E-05 1.5E-09 59.4 -7.8 153 266-433 32-184 (264)
66 KOG2739 Leucine-rich acidic nu 95.9 0.0024 5.1E-08 54.9 0.3 37 421-458 115-153 (260)
67 KOG2123 Uncharacterized conser 95.9 0.0035 7.5E-08 54.3 1.2 81 163-252 18-98 (388)
68 KOG1644 U2-associated snRNP A' 95.4 0.0054 1.2E-07 50.5 0.8 86 342-432 62-150 (233)
69 PF13516 LRR_6: Leucine Rich r 95.3 0.012 2.5E-07 30.4 1.6 22 447-469 1-22 (24)
70 PF12799 LRR_4: Leucine Rich r 95.3 0.026 5.6E-07 34.4 3.3 36 243-280 2-37 (44)
71 PLN03150 hypothetical protein; 95.2 0.038 8.1E-07 56.4 6.1 61 369-433 441-501 (623)
72 PLN03150 hypothetical protein; 94.7 0.073 1.6E-06 54.3 6.6 107 320-433 420-526 (623)
73 PF13516 LRR_6: Leucine Rich r 93.9 0.057 1.2E-06 27.8 2.1 23 163-185 1-23 (24)
74 KOG1644 U2-associated snRNP A' 93.5 0.044 9.6E-07 45.4 1.9 37 162-199 86-123 (233)
75 PF13013 F-box-like_2: F-box-l 93.0 0.098 2.1E-06 39.0 2.9 27 10-37 24-50 (109)
76 COG4886 Leucine-rich repeat (L 92.3 0.13 2.8E-06 49.5 3.6 171 138-329 116-288 (394)
77 KOG4579 Leucine-rich repeat (L 91.6 0.045 9.7E-07 42.3 -0.4 59 343-406 52-110 (177)
78 COG4886 Leucine-rich repeat (L 91.4 0.2 4.4E-06 48.2 3.8 146 139-302 141-287 (394)
79 smart00368 LRR_RI Leucine rich 90.7 0.36 7.8E-06 25.9 2.7 24 164-187 2-25 (28)
80 smart00368 LRR_RI Leucine rich 89.9 0.53 1.2E-05 25.3 3.0 21 423-444 3-23 (28)
81 KOG4579 Leucine-rich repeat (L 89.7 0.14 3E-06 39.7 0.7 106 345-458 28-133 (177)
82 KOG0531 Protein phosphatase 1, 88.7 0.16 3.5E-06 49.1 0.7 104 317-433 94-197 (414)
83 KOG0274 Cdc4 and related F-box 85.4 0.32 6.9E-06 48.3 0.6 44 4-49 105-148 (537)
84 KOG3763 mRNA export factor TAP 84.8 1.7 3.7E-05 42.1 5.1 90 337-428 211-307 (585)
85 KOG0531 Protein phosphatase 1, 84.5 0.28 6.1E-06 47.5 -0.2 36 162-199 93-128 (414)
86 KOG3763 mRNA export factor TAP 81.2 3.4 7.5E-05 40.2 5.5 91 310-402 210-307 (585)
87 PF13504 LRR_7: Leucine rich r 80.9 1.5 3.2E-05 20.3 1.6 11 165-175 2-12 (17)
88 KOG3926 F-box proteins [Amino 69.6 3.5 7.7E-05 35.9 2.2 41 9-49 203-243 (332)
89 PF07723 LRR_2: Leucine Rich R 66.7 6.4 0.00014 20.6 2.0 25 424-448 2-26 (26)
90 PF00560 LRR_1: Leucine Rich R 62.7 4.7 0.0001 20.0 1.0 13 165-177 1-13 (22)
91 PF09372 PRANC: PRANC domain; 53.3 9.2 0.0002 28.1 1.7 25 6-31 70-94 (97)
92 smart00369 LRR_TYP Leucine-ric 52.3 14 0.00029 19.1 1.8 14 164-177 2-15 (26)
93 smart00370 LRR Leucine-rich re 52.3 14 0.00029 19.1 1.8 14 164-177 2-15 (26)
94 KOG3735 Tropomodulin and leiom 49.1 48 0.001 30.5 5.6 96 360-457 188-292 (353)
95 PF03382 DUF285: Mycoplasma pr 47.1 16 0.00034 28.1 2.2 8 393-400 58-65 (120)
96 KOG3735 Tropomodulin and leiom 39.4 86 0.0019 28.9 5.7 122 331-454 185-319 (353)
97 KOG0532 Leucine-rich repeat (L 36.4 7.8 0.00017 38.1 -1.2 14 163-176 120-133 (722)
98 smart00365 LRR_SD22 Leucine-ri 34.1 39 0.00084 17.8 1.7 13 164-176 2-14 (26)
99 PF07735 FBA_2: F-box associat 33.2 1.5E+02 0.0032 19.8 5.8 54 396-455 11-69 (70)
100 KOG2502 Tub family proteins [G 27.9 41 0.00088 31.0 1.9 37 7-43 44-87 (355)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=4.3e-35 Score=257.16 Aligned_cols=380 Identities=28% Similarity=0.516 Sum_probs=273.7
Q ss_pred cccCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeecccCCCchHHHHHHHHhccCCeEeeeccccccccc
Q 010910 7 INTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLSVSIP 86 (497)
Q Consensus 7 ~~~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (497)
++-.||+|++..||++|+ .+.+.++|.+|+.|+..+..-.-|.+++... +++ +
T Consensus 71 ~~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t------------~~r----D---------- 123 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFT------------FQR----D---------- 123 (483)
T ss_pred ccccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhc------------chh----c----------
Confidence 444699999999999999 7999999999999999855444454443321 000 0
Q ss_pred ccccCccCcccccchhhhhhcccccCCCCccccCCccccchhhHHHHHhhC-CCCcEEeeccCCCcChHHHHHHHHhCCC
Q 010910 87 VQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGF-SKLEKLSLIWCSNISSLGLMSLAQKCIH 165 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 165 (497)
+.....+.+.+.| ..|++|.+.+|....+..+..+..+||+
T Consensus 124 --------------------------------------v~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~Cpn 165 (483)
T KOG4341|consen 124 --------------------------------------VDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPN 165 (483)
T ss_pred --------------------------------------CCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCc
Confidence 1111122222222 5788888888887888888888888888
Q ss_pred CCEEEccCcc-cCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCC
Q 010910 166 LKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 244 (497)
Q Consensus 166 L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 244 (497)
+++|++.++. +++..+..+++.|++|++|++..|..+++..+..+..+| ++|++|+++.|+.+....++.+.+++..+
T Consensus 166 IehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC-~kL~~lNlSwc~qi~~~gv~~~~rG~~~l 244 (483)
T KOG4341|consen 166 IEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC-RKLKYLNLSWCPQISGNGVQALQRGCKEL 244 (483)
T ss_pred hhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh-hhHHHhhhccCchhhcCcchHHhccchhh
Confidence 8888888877 777888888888888888888888778887777777777 77888888887766555555544444444
Q ss_pred cEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeee
Q 010910 245 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 324 (497)
Q Consensus 245 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 324 (497)
+++...+ +.....+.+..+...++.+..+++..|+.+++..+..+...+..|+.|.
T Consensus 245 ~~~~~kG------------------------C~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~ 300 (483)
T KOG4341|consen 245 EKLSLKG------------------------CLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLC 300 (483)
T ss_pred hhhhhcc------------------------cccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhc
Confidence 4433332 3334445555555556666666666776677777666666677788888
Q ss_pred ccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEecc
Q 010910 325 LSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLV 404 (497)
Q Consensus 325 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (497)
.++|.++++..+..+..++++|+.|.+.+|.++++.++..+..+++.|+.+++..|..+.+..+..+..+|+.|+.+.++
T Consensus 301 ~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 301 YSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred ccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence 88777777777778877788888888888888888888888888888888888887777777777777778888888888
Q ss_pred CCCCCCHHHHHHHHH---cCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccchhHHhhh-hhccccc
Q 010910 405 DCSSIGDDAICSIAE---GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGKFFSPQLH-SYSHFHL 477 (497)
Q Consensus 405 ~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~~~~ 477 (497)
.|..++|.++..+.. +...|+.+++++|+.+++..++.+ ..|++|+.+++.+|.+++.+++..++ +++++.+
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 887777776655543 356778888888887777777666 47888888888888888888887766 3555443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.2e-28 Score=216.87 Aligned_cols=285 Identities=31% Similarity=0.547 Sum_probs=226.7
Q ss_pred CCCEEEccCcc-cCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCC
Q 010910 165 HLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (497)
Q Consensus 165 ~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 243 (497)
.||.|.++++. +.+..+..+...||++++|.+.+|..+++.....+...| +.|++|++..|..+++..++.+...|++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C-~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYC-RKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhc-chhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46666666665 555556666666666666666666666666666666655 5666666666555555555555555555
Q ss_pred CcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCee
Q 010910 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (497)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (497)
|+++++++ +..+.+.++..+.+.+..++.+...||.....+.+..+...++-+.++
T Consensus 218 L~~lNlSw------------------------c~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 218 LKYLNLSW------------------------CPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL 273 (483)
T ss_pred HHHhhhcc------------------------CchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence 55555544 233344556666666777888877899888888888888888889999
Q ss_pred eccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEec
Q 010910 324 TLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHL 403 (497)
Q Consensus 324 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 403 (497)
++..|..++|.++..+..++..|+.|..++|.++++..+..+.+.+++|+.|.++.|.++++.++..+..+++.|+.+++
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHH---hhCCCCCeEeecccccccchhHHhhhhhcc
Q 010910 404 VDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVG---EHCNSLTELSLRFCDRYGKFFSPQLHSYSH 474 (497)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 474 (497)
.+|..+++..+..++.+||.|+.|.++.|..++++++..+. .+...|+.+.+++|+.+++...+.+..-+.
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 99988888888899999999999999999999999887775 355689999999999999988888776543
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.3e-26 Score=191.41 Aligned_cols=290 Identities=25% Similarity=0.351 Sum_probs=196.1
Q ss_pred cCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeecccCCCc--hHHHHHHHHhccCCeEeeeccccccccc
Q 010910 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSP--DLFVKLLSRRFANVKSIHIDERLSVSIP 86 (497)
Q Consensus 9 ~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (497)
..||||+++.||+.|+ .+|+++++.|||||+++.+..+.|.+.+..+.+ -.....+.++ .+..+.+.
T Consensus 99 ~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rla-------- 167 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLA-------- 167 (419)
T ss_pred ccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcc--------
Confidence 4799999999999999 799999999999999999999999988876551 1122222222 11111111
Q ss_pred ccccCccCcccccchhhhhhcccccCCCCccccCCccccchhhHHHHH-hhCCCCcEEeeccCCCcChHHHHHHHHhCCC
Q 010910 87 VQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALA-DGFSKLEKLSLIWCSNISSLGLMSLAQKCIH 165 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 165 (497)
+..+.+..+...+ ..-.+|+.++|+.. .++...+..++..|.+
T Consensus 168 -----------------------------------r~~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 168 -----------------------------------RSFMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSK 211 (419)
T ss_pred -----------------------------------hhhhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHh
Confidence 0112222222222 22257899999984 5888889999999999
Q ss_pred CCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCc
Q 010910 166 LKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLE 245 (497)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 245 (497)
|+.|.+.+..++|.....++++ .+|+.|++++|.+++..+..-++..| +.|..|+++.|...++..-..+..--++|+
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred hhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhh-hhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 9999999999999888888876 78999999999989888888888887 788888888886555553233333334666
Q ss_pred EEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeec
Q 010910 246 TLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTL 325 (497)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 325 (497)
.|+++++. ..+....+..+.+.||+|.+|+++.+..+++..+..+.+ ++.|++|.+
T Consensus 290 ~LNlsG~r-----------------------rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSl 345 (419)
T KOG2120|consen 290 QLNLSGYR-----------------------RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSL 345 (419)
T ss_pred hhhhhhhH-----------------------hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeeeh
Confidence 66665531 111222344555566666666666666666655554444 677777777
Q ss_pred cCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcE
Q 010910 326 SDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (497)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (497)
+.|..+..+.+..+.. .|.|.+|++.+| +++.....+...+|+|+.
T Consensus 346 sRCY~i~p~~~~~l~s-~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNS-KPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhcCCChHHeeeecc-CcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 7777666655555543 778888888775 344444555555666554
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-17 Score=138.76 Aligned_cols=212 Identities=24% Similarity=0.360 Sum_probs=101.6
Q ss_pred CcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCE
Q 010910 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348 (497)
Q Consensus 269 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 348 (497)
|++++|+...++...+..+.++|.+|+.|.+.|. .+.+.....+.+ -.+|+.|+++.|.+++..++..+.++|..|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4444444444444444444444444444444442 122222222222 34455555555555555555444445555555
Q ss_pred EeecCCCCCChhHHHHHHhhCCCCcEEecCCCC-CCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEE
Q 010910 349 LEINGCHNIGTMGLESIGKFCRNLTELALLYCQ-RIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKL 427 (497)
Q Consensus 349 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 427 (497)
|+|+.|....+..-..+..--++|+.|++++|. ++.+..+..+...||+|..|++++|..+++..+..+. .++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheee
Confidence 555554433322111111223455555555542 2333344445555666666666665555553333333 36666666
Q ss_pred ecccccccCHHHHHHHHhhCCCCCeEeecccccccchhHHhhh-hhccccccCccccccc
Q 010910 428 HIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGKFFSPQLH-SYSHFHLGCLLFKFAN 486 (497)
Q Consensus 428 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~~~~~~~~~~~~~ 486 (497)
.++.|+.+..+.+..+ ...|+|.+|++.|| +++...+-+. .++++.+.|-.+..-+
T Consensus 344 SlsRCY~i~p~~~~~l-~s~psl~yLdv~g~--vsdt~mel~~e~~~~lkin~q~~~~ia 400 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLEL-NSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKINCQHFNFIA 400 (419)
T ss_pred ehhhhcCCChHHeeee-ccCcceEEEEeccc--cCchHHHHHHHhCccccccceeeeeee
Confidence 6666665555555444 35666666666666 4554444443 3555555555444433
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=3.6e-15 Score=139.19 Aligned_cols=276 Identities=22% Similarity=0.262 Sum_probs=118.1
Q ss_pred cChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHh---hCCCCceEeccCCCCCC-HHHHHHHHhhcccCccEEecCCC
Q 010910 151 ISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGK---VCNQLEDLNLRFCEGLT-DTGLVDLAHGCGKSLKSLGIAAC 226 (497)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~~L~~L~l~~~ 226 (497)
++......++..+++|++|+++++.+++.....+.. ..++|++++++++.... ...+..
T Consensus 10 l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~----------------- 72 (319)
T cd00116 10 LKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQS----------------- 72 (319)
T ss_pred ccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHH-----------------
Confidence 444445555555666777777777665544333332 33446666665542110 111111
Q ss_pred CCCChHHHHHHHhcCCCCcEEEccCCCCChhH---HHHHHhcCCCCcEEEeecCCCChHHHHHHH---hcC-CCCceeec
Q 010910 227 VKITDVSLEAVGSHCKSLETLSLDSEFIHNKG---VHAVAQGCPLLRVLKLQCINVTDEALVAVG---NQC-LSLELLAL 299 (497)
Q Consensus 227 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~---~~~-~~L~~L~l 299 (497)
+......+++|++|+++++.+.... +..+... ++|++|+++++.+.+..+..+. ..+ ++|+.|++
T Consensus 73 -------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 73 -------LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred -------HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 1111122445555555544443211 1222222 3455555555555433322221 122 44555555
Q ss_pred ccccCCCHHH---HHHHhccCcccCeeeccCCCCCChHHHHHHhh---cCCCCCEEeecCCCCCChhHHHHH---HhhCC
Q 010910 300 YSFQQFTDKG---LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT---GCKELTHLEINGCHNIGTMGLESI---GKFCR 370 (497)
Q Consensus 300 ~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~ 370 (497)
.++. ++... +......+++|+.|++++|. +++..+..+.. ..++|++|++++| .+++.+...+ ...++
T Consensus 145 ~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 145 GRNR-LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLK 221 (319)
T ss_pred CCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccC
Confidence 4442 22111 11122234455555555543 44333333222 2335666666553 2333332222 22345
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcC----CCCcEEeccCCCCCCHHHHHHHH---HcCCCCcEEecccccccCHHHHHHH
Q 010910 371 NLTELALLYCQRIGNLALLEVGRGC----KSLQALHLVDCSSIGDDAICSIA---EGCQNLKKLHIRRCYKIGNNGIVAV 443 (497)
Q Consensus 371 ~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~ 443 (497)
+|++|++++ +.+++.++..+...+ +.|++|++.+| .+++.+...+. ..+++|+.+++++|. +++++...+
T Consensus 222 ~L~~L~ls~-n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~ 298 (319)
T cd00116 222 SLEVLNLGD-NNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLL 298 (319)
T ss_pred CCCEEecCC-CcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHH
Confidence 566666655 345544444433322 45555655554 34332222222 223455556665553 554433333
Q ss_pred Hh---hC-CCCCeEeecc
Q 010910 444 GE---HC-NSLTELSLRF 457 (497)
Q Consensus 444 ~~---~~-~~L~~L~l~~ 457 (497)
.+ .. +.|+++++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 299 AESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHhhcCCchhhcccCC
Confidence 31 22 3455555544
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=1.2e-16 Score=171.25 Aligned_cols=223 Identities=14% Similarity=0.017 Sum_probs=98.3
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcc
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 319 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 319 (497)
.+++|++|++++|.+.... ...+..+++|+.|+++.+.+.......+. .+++|++|+++++. +.. .+......+++
T Consensus 234 ~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~~ 309 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNS-LSG-EIPELVIQLQN 309 (968)
T ss_pred cCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCe-ecc-CCChhHcCCCC
Confidence 4445555555544433211 11223345555555544443322111121 24455555554432 111 11122223455
Q ss_pred cCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCc
Q 010910 320 LKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQ 399 (497)
Q Consensus 320 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 399 (497)
|+.|+++++. +.......+ ..+++|+.|+++++. +.... ......+++|+.|++++ +.+.......+ ..+++|+
T Consensus 310 L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~-p~~l~~~~~L~~L~Ls~-n~l~~~~p~~~-~~~~~L~ 383 (968)
T PLN00113 310 LEILHLFSNN-FTGKIPVAL-TSLPRLQVLQLWSNK-FSGEI-PKNLGKHNNLTVLDLST-NNLTGEIPEGL-CSSGNLF 383 (968)
T ss_pred CcEEECCCCc-cCCcCChhH-hcCCCCCEEECcCCC-CcCcC-ChHHhCCCCCcEEECCC-CeeEeeCChhH-hCcCCCC
Confidence 5555555543 221111112 235556666665532 22111 11122345666666655 23322111111 2345666
Q ss_pred EEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccc---hhHHhhhhhcccc
Q 010910 400 ALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGK---FFSPQLHSYSHFH 476 (497)
Q Consensus 400 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~~~ 476 (497)
.|++.++ .+... ++.....+++|+.|++++|. ++...... ...+++|+.|++++| .++. ..+..+.++..+.
T Consensus 384 ~L~l~~n-~l~~~-~p~~~~~~~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 384 KLILFSN-SLEGE-IPKSLGACRSLRRVRLQDNS-FSGELPSE-FTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred EEECcCC-Eeccc-CCHHHhCCCCCCEEECcCCE-eeeECChh-HhcCCCCCEEECcCC-cccCccChhhccCCCCcEEE
Confidence 6666654 23222 22223457788888888775 44322222 246788888888877 3432 2233455555555
Q ss_pred c
Q 010910 477 L 477 (497)
Q Consensus 477 ~ 477 (497)
+
T Consensus 459 L 459 (968)
T PLN00113 459 L 459 (968)
T ss_pred C
Confidence 5
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.7e-18 Score=159.47 Aligned_cols=311 Identities=21% Similarity=0.172 Sum_probs=167.8
Q ss_pred hCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcC
Q 010910 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (497)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 241 (497)
.++.|+.|||+.|.+.......+.. -.++++|+++++. ++..+...|.. ..+|..|.++.+. ++..+. ....++
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~-~~ni~~L~La~N~-It~l~~~~F~~--lnsL~tlkLsrNr-ittLp~-r~Fk~L 220 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPA-KVNIKKLNLASNR-ITTLETGHFDS--LNSLLTLKLSRNR-ITTLPQ-RSFKRL 220 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCC-CCCceEEeecccc-ccccccccccc--cchheeeecccCc-ccccCH-HHhhhc
Confidence 3455555565555443332222221 1456666666552 33222222211 1456666666532 222221 222356
Q ss_pred CCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccC
Q 010910 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (497)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 321 (497)
++|+.|++..|.+....... ++++++|+.|.+..|++..-.-..+ ..+.++++|++..+. +... -..+.-+++.|+
T Consensus 221 ~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~F-y~l~kme~l~L~~N~-l~~v-n~g~lfgLt~L~ 296 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAF-YGLEKMEHLNLETNR-LQAV-NEGWLFGLTSLE 296 (873)
T ss_pred chhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCcce-eeecccceeecccch-hhhh-hcccccccchhh
Confidence 66677666666554332222 2456666666666555532111111 124667777775431 2111 111222366777
Q ss_pred eeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEE
Q 010910 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQAL 401 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 401 (497)
.|+++++. +..-..... ..++.|+.|+|++ +.++.-.-..+.. +..|++|.++. +.++... ...+..+.+|++|
T Consensus 297 ~L~lS~Na-I~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~-L~~Le~LnLs~-Nsi~~l~-e~af~~lssL~~L 370 (873)
T KOG4194|consen 297 QLDLSYNA-IQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRV-LSQLEELNLSH-NSIDHLA-EGAFVGLSSLHKL 370 (873)
T ss_pred hhccchhh-hheeecchh-hhcccceeEeccc-cccccCChhHHHH-HHHhhhhcccc-cchHHHH-hhHHHHhhhhhhh
Confidence 77777753 322222222 2377888888887 3443322222222 47788888887 5554422 1223456899999
Q ss_pred eccCCC---CCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc--cccchhHHhhhhhcccc
Q 010910 402 HLVDCS---SIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD--RYGKFFSPQLHSYSHFH 476 (497)
Q Consensus 402 ~l~~~~---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~l~~l~~~~ 476 (497)
+++.+. .+.|.+ ..+ ..+++|++|.+.++. +....-..+ .+++.|+.|++.++. .+.+++++.+ .++++.
T Consensus 371 dLr~N~ls~~IEDaa-~~f-~gl~~LrkL~l~gNq-lk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAA-VAF-NGLPSLRKLRLTGNQ-LKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred cCcCCeEEEEEecch-hhh-ccchhhhheeecCce-eeecchhhh-ccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 998742 133322 222 358999999999985 655444444 589999999999986 5667888888 788887
Q ss_pred c-cCcccccccccccccc
Q 010910 477 L-GCLLFKFANLRDILCW 493 (497)
Q Consensus 477 ~-~~~~~~~~~~~~~~~~ 493 (497)
. +..++=.+.+.|-+=|
T Consensus 446 ~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 446 MNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred hcccceEEeccHHHHHHH
Confidence 7 4555555555555555
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.7e-14 Score=134.71 Aligned_cols=284 Identities=20% Similarity=0.153 Sum_probs=149.9
Q ss_pred cCCccccchhhHHHHHhhCCCCcEEeeccCCCcChHHH---HHHHHhCCCCCEEEccCcccC--cHhHHHHH---hhCCC
Q 010910 119 QSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGL---MSLAQKCIHLKSLDLQGCYVG--DQGLAAVG---KVCNQ 190 (497)
Q Consensus 119 ~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~---~~~~~ 190 (497)
+|....+++.....+.+.+++|+.|.+.++. ++.... .......++|++++++++.+. ...+..+. ..+++
T Consensus 4 ~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 4 SLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred ccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 4555567767777777778889999999974 655443 344556778999999998766 33333322 23568
Q ss_pred CceEeccCCCCC--CHHHHHHHHhhcccCccEEecCCCCCCChHHHHHH---HhcC-CCCcEEEccCCCCChhHHH---H
Q 010910 191 LEDLNLRFCEGL--TDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAV---GSHC-KSLETLSLDSEFIHNKGVH---A 261 (497)
Q Consensus 191 L~~L~l~~~~~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~---~ 261 (497)
|++|+++++... ....+..+... ++|++|+++++. +.......+ ...+ ++|++|++++|.+...... .
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~--~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRS--SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhcc--CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 888888876432 12223233221 347777776653 332222221 2233 5556666665555432222 2
Q ss_pred HHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHH---H
Q 010910 262 VAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLE---A 338 (497)
Q Consensus 262 ~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~---~ 338 (497)
.+..+++|++|+++++.+.+..+..+... ....++|+.|++++|. +++.+.. .
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-----------------------l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 215 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEG-----------------------LKANCNLEVLDLNNNG-LTDEGASALAE 215 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHH-----------------------HHhCCCCCEEeccCCc-cChHHHHHHHH
Confidence 22233445555554444443332222111 1123455555555543 3333322 2
Q ss_pred HhhcCCCCCEEeecCCCCCChhHHHHHHhhC----CCCcEEecCCCCCCChHHHHHH---HhcCCCCcEEeccCCCCCCH
Q 010910 339 IATGCKELTHLEINGCHNIGTMGLESIGKFC----RNLTELALLYCQRIGNLALLEV---GRGCKSLQALHLVDCSSIGD 411 (497)
Q Consensus 339 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~ 411 (497)
....+++|++|+++++ .+++.++..+...+ +.|++|++++| .+++.+...+ ...+++|+.++++++ .+++
T Consensus 216 ~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~ 292 (319)
T cd00116 216 TLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGE 292 (319)
T ss_pred HhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcH
Confidence 2233566677777663 35554444444433 57777777763 5554444333 223466777777763 5555
Q ss_pred HHHHHHHH---cC-CCCcEEeccccc
Q 010910 412 DAICSIAE---GC-QNLKKLHIRRCY 433 (497)
Q Consensus 412 ~~~~~~~~---~~-~~L~~L~l~~~~ 433 (497)
.+...++. .. +.|+.|++.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCCC
Confidence 44333332 23 567777776653
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=9.3e-16 Score=164.37 Aligned_cols=318 Identities=17% Similarity=0.069 Sum_probs=203.4
Q ss_pred HhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCC--CHHHHHHHH
Q 010910 134 ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL--TDTGLVDLA 211 (497)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~ 211 (497)
...+++|+.|+++++. +.......+...+++|++|++++|.+...... ..+++|++|+++++... .+..+..+
T Consensus 89 ~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l- 163 (968)
T PLN00113 89 IFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSF- 163 (968)
T ss_pred HhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcC-
Confidence 3457999999998753 44333334455789999999999876533221 24588999999987421 12233332
Q ss_pred hhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcC
Q 010910 212 HGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQC 291 (497)
Q Consensus 212 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~ 291 (497)
++|++|+++++..... ... ....+++|++|++++|.+..... ..+..+++|+.|+++.+.+.......+ ..+
T Consensus 164 ----~~L~~L~L~~n~l~~~-~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l 235 (968)
T PLN00113 164 ----SSLKVLDLGGNVLVGK-IPN-SLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEI-GGL 235 (968)
T ss_pred ----CCCCEEECccCccccc-CCh-hhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcCChhH-hcC
Confidence 7899999988642221 111 22478899999999887654322 333568899999998887765433333 357
Q ss_pred CCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCC
Q 010910 292 LSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 371 (497)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 371 (497)
++|++|+++++. +.. .+......+++|+.|+++++. +.......+. .+++|+.|+++++. +... +......+++
T Consensus 236 ~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~ 309 (968)
T PLN00113 236 TSLNHLDLVYNN-LTG-PIPSSLGNLKNLQYLFLYQNK-LSGPIPPSIF-SLQKLISLDLSDNS-LSGE-IPELVIQLQN 309 (968)
T ss_pred CCCCEEECcCce-ecc-ccChhHhCCCCCCEEECcCCe-eeccCchhHh-hccCcCEEECcCCe-eccC-CChhHcCCCC
Confidence 899999998763 221 122233457899999998875 3322222333 48899999998854 3322 2233445789
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCC
Q 010910 372 LTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLT 451 (497)
Q Consensus 372 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 451 (497)
|+.|++++ +.+....... ...+++|+.|+++++ .++.. ++.....+++|+.|++++|. ++......+ ..+++|+
T Consensus 310 L~~L~l~~-n~~~~~~~~~-~~~l~~L~~L~L~~n-~l~~~-~p~~l~~~~~L~~L~Ls~n~-l~~~~p~~~-~~~~~L~ 383 (968)
T PLN00113 310 LEILHLFS-NNFTGKIPVA-LTSLPRLQVLQLWSN-KFSGE-IPKNLGKHNNLTVLDLSTNN-LTGEIPEGL-CSSGNLF 383 (968)
T ss_pred CcEEECCC-CccCCcCChh-HhcCCCCCEEECcCC-CCcCc-CChHHhCCCCCcEEECCCCe-eEeeCChhH-hCcCCCC
Confidence 99999988 4454432222 345899999999986 34322 23334468899999999885 543222223 4678999
Q ss_pred eEeecccccccc---hhHHhhhhhccccc
Q 010910 452 ELSLRFCDRYGK---FFSPQLHSYSHFHL 477 (497)
Q Consensus 452 ~L~l~~~~~l~~---~~~~~l~~l~~~~~ 477 (497)
.|++++| .++. ..+..+.++..+.+
T Consensus 384 ~L~l~~n-~l~~~~p~~~~~~~~L~~L~L 411 (968)
T PLN00113 384 KLILFSN-SLEGEIPKSLGACRSLRRVRL 411 (968)
T ss_pred EEECcCC-EecccCCHHHhCCCCCCEEEC
Confidence 9999988 4432 34445566666665
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.64 E-value=2.4e-15 Score=149.05 Aligned_cols=283 Identities=30% Similarity=0.485 Sum_probs=153.0
Q ss_pred CCCCCEEEccCcc--cCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCC-CCC--ChHHHHHH
Q 010910 163 CIHLKSLDLQGCY--VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAAC-VKI--TDVSLEAV 237 (497)
Q Consensus 163 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~-~~~--~~~~~~~~ 237 (497)
+..++.+++..+. ........+...++.|+.|.+..+..+.+.++..+...+ +.|+.|+++++ ... .......+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~ 238 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLL 238 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhh
Confidence 3444444444332 333444444444566666666666656555555555555 56666666652 111 11112223
Q ss_pred HhcCCCCcEEEccCCC-CChhHHHHHHhcCCCCcEEEeecCC-CChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhc
Q 010910 238 GSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGK 315 (497)
Q Consensus 238 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 315 (497)
...+++|+.++++.+. +++.++..+...|++|+.|.+.... +++.++..+...+++|++|++.+|..+++.++..+..
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 4455666666666544 5555555555556666666553222 5555555555555666666666555555555555544
Q ss_pred cCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCC-hhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhc
Q 010910 316 GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG-TMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG 394 (497)
Q Consensus 316 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 394 (497)
.+++++.|.+..... ++.++.+.+.++.... +.........+++++.+.+..|. ..+.+..
T Consensus 319 ~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~----- 380 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNG------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLE----- 380 (482)
T ss_pred hCcchhhhhhhhcCC------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchH-----
Confidence 455555544333221 3333333333322222 23333444445666666665544 4443332
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccchhHHhhhh
Q 010910 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGKFFSPQLHS 471 (497)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 471 (497)
+.+.+|+.++ ..+......+..++.|.+..|..+++..+......+..++.+++.+|..++..+...+..
T Consensus 381 ------~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 381 ------LSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred ------HHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhc
Confidence 3334444444 444444444555888888888878887777776558888889999998888777665444
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.61 E-value=4.5e-17 Score=150.25 Aligned_cols=319 Identities=22% Similarity=0.223 Sum_probs=178.8
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcc
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 215 (497)
.+|+|+++++... .++ .++.+.....+|+.|+|.+|.+....-+.+. ..+.|++|+++.+. ++......+.. .
T Consensus 100 nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSrN~-is~i~~~sfp~--~ 172 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSRNL-ISEIPKPSFPA--K 172 (873)
T ss_pred cCCcceeeeeccc-hhh--hcccccccccceeEEeeeccccccccHHHHH-hHhhhhhhhhhhch-hhcccCCCCCC--C
Confidence 3566666666542 122 2223333344566777766665443333333 23566666666542 22111111111 1
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
.++++|+++++. ++......+ ..+.+|..|.++.|.++.-.... ++.+|+|+.|+|..|.+.......+. .+++|+
T Consensus 173 ~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~-Fk~L~~L~~LdLnrN~irive~ltFq-gL~Sl~ 248 (873)
T KOG4194|consen 173 VNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRNRITTLPQRS-FKRLPKLESLDLNRNRIRIVEGLTFQ-GLPSLQ 248 (873)
T ss_pred CCceEEeecccc-ccccccccc-cccchheeeecccCcccccCHHH-hhhcchhhhhhccccceeeehhhhhc-Cchhhh
Confidence 357777776642 222221111 24456677777766665443332 34567777777766665443222222 356666
Q ss_pred eeeccccc--CCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCc
Q 010910 296 LLALYSFQ--QFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLT 373 (497)
Q Consensus 296 ~L~l~~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 373 (497)
.|.+..++ .+.+.. +-.+.++++|+++.+. +....-..++ ++..|+.|+++++ .+........ +.+++|+
T Consensus 249 nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N~-l~~vn~g~lf-gLt~L~~L~lS~N-aI~rih~d~W-sftqkL~ 320 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGA----FYGLEKMEHLNLETNR-LQAVNEGWLF-GLTSLEQLDLSYN-AIQRIHIDSW-SFTQKLK 320 (873)
T ss_pred hhhhhhcCcccccCcc----eeeecccceeecccch-hhhhhccccc-ccchhhhhccchh-hhheeecchh-hhcccce
Confidence 66665432 122222 2236778888887764 3332222333 4788888888873 3332222222 2379999
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccC---HHHHHHHHhhCCCC
Q 010910 374 ELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIG---NNGIVAVGEHCNSL 450 (497)
Q Consensus 374 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~L 450 (497)
+|++++ +.++...-..+. .+..|++|.++.+ .++...-..+ ..+.+|+.|+++.+. ++ +++...+ .++++|
T Consensus 321 ~LdLs~-N~i~~l~~~sf~-~L~~Le~LnLs~N-si~~l~e~af-~~lssL~~LdLr~N~-ls~~IEDaa~~f-~gl~~L 394 (873)
T KOG4194|consen 321 ELDLSS-NRITRLDEGSFR-VLSQLEELNLSHN-SIDHLAEGAF-VGLSSLHKLDLRSNE-LSWCIEDAAVAF-NGLPSL 394 (873)
T ss_pred eEeccc-cccccCChhHHH-HHHHhhhhccccc-chHHHHhhHH-HHhhhhhhhcCcCCe-EEEEEecchhhh-ccchhh
Confidence 999998 666544333332 3689999999884 5543222222 357899999999875 32 3344444 469999
Q ss_pred CeEeecccc--cccchhHHhhhhhccccccC
Q 010910 451 TELSLRFCD--RYGKFFSPQLHSYSHFHLGC 479 (497)
Q Consensus 451 ~~L~l~~~~--~l~~~~~~~l~~l~~~~~~~ 479 (497)
+.|++.|++ .++..++..+-.+.+++++.
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCC
Confidence 999999995 56777788888888888653
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.52 E-value=8.6e-14 Score=121.10 Aligned_cols=277 Identities=21% Similarity=0.252 Sum_probs=125.6
Q ss_pred HHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCC---CCceEeccCCC-CCCHHHHHHHHhhcccCccEEecCCCCCCC
Q 010910 155 GLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCN---QLEDLNLRFCE-GLTDTGLVDLAHGCGKSLKSLGIAACVKIT 230 (497)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 230 (497)
.+......+..+++++++++.++.+....+++.+. +|+..++++.. +.....+. ..|+
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~-------e~L~----------- 82 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIP-------EALK----------- 82 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHH-------HHHH-----------
Confidence 34444556678999999999888877777765443 44444444321 00000000 0010
Q ss_pred hHHHHHHHhcCCCCcEEEccCCCCChhHH---HHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCH
Q 010910 231 DVSLEAVGSHCKSLETLSLDSEFIHNKGV---HAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTD 307 (497)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 307 (497)
.+......+|+|+++++++|.+.+.++ ..++..+..|++|.+.++.++..+-..+..-+ ..|.
T Consensus 83 --~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al---~~l~--------- 148 (382)
T KOG1909|consen 83 --MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRAL---FELA--------- 148 (382)
T ss_pred --HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHH---HHHH---------
Confidence 111112345667777777766655443 34445566666666666666554433332210 0000
Q ss_pred HHHHHHhccCcccCeeeccCCCCCChHH---HHHHhhcCCCCCEEeecCCCCCChhHHHHH---HhhCCCCcEEecCCCC
Q 010910 308 KGLHAVGKGCKKLKNLTLSDCYFLSDMG---LEAIATGCKELTHLEINGCHNIGTMGLESI---GKFCRNLTELALLYCQ 381 (497)
Q Consensus 308 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~ 381 (497)
.......-+.|+.+....+. +.+.+ +...++..+.|+.+.+.. +.+...++..+ +..||+|+.|++.. +
T Consensus 149 --~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-N 223 (382)
T KOG1909|consen 149 --VNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-N 223 (382)
T ss_pred --HHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-c
Confidence 00001112445555444433 22211 222233345555555554 23333333222 22355555555555 3
Q ss_pred CCChHHHHHHHh---cCCCCcEEeccCCCCCCHHHHHHHH----HcCCCCcEEecccccccCHHHHHHHH---hhCCCCC
Q 010910 382 RIGNLALLEVGR---GCKSLQALHLVDCSSIGDDAICSIA----EGCQNLKKLHIRRCYKIGNNGIVAVG---EHCNSLT 451 (497)
Q Consensus 382 ~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~ 451 (497)
.++..+-..+.+ .+++|+.|++++| .+.+.+...+. ...|+|+.|.+.+|. ++.++...+. ..-|.|+
T Consensus 224 tft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 224 TFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLE 301 (382)
T ss_pred hhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhH
Confidence 444333333322 3355555555555 33333322222 234556666665554 4443332222 2245566
Q ss_pred eEeecccccc--cchhHHhhhh
Q 010910 452 ELSLRFCDRY--GKFFSPQLHS 471 (497)
Q Consensus 452 ~L~l~~~~~l--~~~~~~~l~~ 471 (497)
.|++++| .+ .+++++.+++
T Consensus 302 kLnLngN-~l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 302 KLNLNGN-RLGEKDEGIDEIAS 322 (382)
T ss_pred HhcCCcc-cccccchhHHHHHH
Confidence 6666665 44 4455554443
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.50 E-value=1e-13 Score=137.48 Aligned_cols=169 Identities=34% Similarity=0.514 Sum_probs=90.7
Q ss_pred cCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhC
Q 010910 290 QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFC 369 (497)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 369 (497)
.+++|+.+++..+..+++.++..+...|++|+.|.+..|..+++.++..+...+++|++|++++|..+++.++..+...|
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 34555555555544445555555544455555555555544555555555555555555555555555555555555555
Q ss_pred CCCcEEecCCC---CCCChHHH------------HHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccc
Q 010910 370 RNLTELALLYC---QRIGNLAL------------LEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYK 434 (497)
Q Consensus 370 ~~L~~L~l~~~---~~~~~~~~------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 434 (497)
++|+.|.+..+ ..+++.++ ......+++++.+.+..+. .++.+. .+.+.+|+.
T Consensus 321 ~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~-----------~~~l~gc~~ 388 (482)
T KOG1947|consen 321 PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL-----------ELSLRGCPN 388 (482)
T ss_pred cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch-----------HHHhcCCcc
Confidence 55544443322 22333333 3333344455555444443 333332 344455555
Q ss_pred cCHHHHHHHHhhCCCCCeEeecccccccchhHHhhhh
Q 010910 435 IGNNGIVAVGEHCNSLTELSLRFCDRYGKFFSPQLHS 471 (497)
Q Consensus 435 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 471 (497)
++ ..+......+.+++.|++..|..+++.++.....
T Consensus 389 l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~ 424 (482)
T KOG1947|consen 389 LT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLAD 424 (482)
T ss_pred cc-hHHHHHhccCCccceEecccCccccccchHHHhh
Confidence 55 5555555555568999999999899888877543
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.48 E-value=1.3e-13 Score=148.29 Aligned_cols=287 Identities=20% Similarity=0.257 Sum_probs=127.3
Q ss_pred cCCccccchhhHHHHH---hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEe
Q 010910 119 QSESYYLSDSGLNALA---DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLN 195 (497)
Q Consensus 119 ~l~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 195 (497)
+|..+.+....+..+. ..+++|+.|+++++..+...+ . ...+++|++|++++|.........+ ..+++|+.|+
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~ 687 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLD 687 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCccccchhh-hccCCCCEEe
Confidence 4444444444443332 234566666666543332211 1 2345666666666654222222222 2345666666
Q ss_pred ccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEee
Q 010910 196 LRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQ 275 (497)
Q Consensus 196 l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 275 (497)
+++|..+....... . .++|+.|++++|..+... ....++|++|+++++.+..- .... .+++|++|.+.
T Consensus 688 L~~c~~L~~Lp~~i---~-l~sL~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~n~i~~l--P~~~-~l~~L~~L~l~ 755 (1153)
T PLN03210 688 MSRCENLEILPTGI---N-LKSLYRLNLSGCSRLKSF-----PDISTNISWLDLDETAIEEF--PSNL-RLENLDELILC 755 (1153)
T ss_pred CCCCCCcCccCCcC---C-CCCCCEEeCCCCCCcccc-----ccccCCcCeeecCCCccccc--cccc-ccccccccccc
Confidence 66654332211000 1 256666666665432211 11234566666665543221 1111 24555555553
Q ss_pred cCCCC---hH--HH-HHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEE
Q 010910 276 CINVT---DE--AL-VAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHL 349 (497)
Q Consensus 276 ~~~~~---~~--~l-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 349 (497)
..... .. .+ ......+++|+.|+++++..... ++.....+++|+.|++++|..+.. ++... .+++|+.|
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L 830 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESL 830 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEE
Confidence 21100 00 00 00111235666666665432211 122223456666666666543322 11111 35566666
Q ss_pred eecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEec
Q 010910 350 EINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHI 429 (497)
Q Consensus 350 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 429 (497)
++++|..+... ....++|++|++++ +.++.. ..-...+++|+.|++.+|+.+.. ++.....+++|+.+++
T Consensus 831 ~Ls~c~~L~~~-----p~~~~nL~~L~Ls~-n~i~~i--P~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 831 DLSGCSRLRTF-----PDISTNISDLNLSR-TGIEEV--PWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDF 900 (1153)
T ss_pred ECCCCCccccc-----cccccccCEeECCC-CCCccC--hHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeec
Confidence 66666544221 11125666666665 444432 11223466666666666655543 2212234566666666
Q ss_pred ccccccC
Q 010910 430 RRCYKIG 436 (497)
Q Consensus 430 ~~~~~~~ 436 (497)
++|..++
T Consensus 901 ~~C~~L~ 907 (1153)
T PLN03210 901 SDCGALT 907 (1153)
T ss_pred CCCcccc
Confidence 6665443
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.40 E-value=1e-12 Score=141.49 Aligned_cols=270 Identities=20% Similarity=0.248 Sum_probs=143.9
Q ss_pred hCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCH--HHHHHHHhhcccCccEEecCCCCCCChHHHHHHHh
Q 010910 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD--TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS 239 (497)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 239 (497)
.+++|+.|+++++..... +..+. .+++|++|++.+|..... ..+.. .++|+.|++++|..+...+.. .
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~-ip~ls-~l~~Le~L~L~~c~~L~~lp~si~~-----L~~L~~L~L~~c~~L~~Lp~~---i 701 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKE-IPDLS-MATNLETLKLSDCSSLVELPSSIQY-----LNKLEDLDMSRCENLEILPTG---I 701 (1153)
T ss_pred cCCCCCEEECCCCCCcCc-CCccc-cCCcccEEEecCCCCccccchhhhc-----cCCCCEEeCCCCCCcCccCCc---C
Confidence 355566666655431100 11111 335666666665543221 11111 155666666665433322111 1
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCC--CH--HHH-HHHh
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQF--TD--KGL-HAVG 314 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~--~~~-~~l~ 314 (497)
.+++|+.|++++|.... .+....++|+.|++.++.+.. +.... .+++|++|.+.++... .. ..+ ....
T Consensus 702 ~l~sL~~L~Lsgc~~L~----~~p~~~~nL~~L~L~~n~i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLK----SFPDISTNISWLDLDETAIEE--FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CCCCCCEEeCCCCCCcc----ccccccCCcCeeecCCCcccc--ccccc-cccccccccccccchhhccccccccchhhh
Confidence 35566666666543211 111223456666665554432 11101 2456666666543210 00 000 0011
Q ss_pred ccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhc
Q 010910 315 KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG 394 (497)
Q Consensus 315 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 394 (497)
...++|+.|.+++|..+.. ++.-..++++|+.|++++|..+.... ... .+++|+.|++++|..+... ...
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP--~~~-~L~sL~~L~Ls~c~~L~~~-----p~~ 844 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLP--TGI-NLESLESLDLSGCSRLRTF-----PDI 844 (1153)
T ss_pred hccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeC--CCC-CccccCEEECCCCCccccc-----ccc
Confidence 1246788888887754332 22223458889999998887654321 111 3688999999988765431 122
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccc
Q 010910 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGK 463 (497)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 463 (497)
.++|+.|+++++ .++. ++.....+++|+.|++++|.+++. +......+++|+.+++++|..++.
T Consensus 845 ~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 845 STNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCccccc
Confidence 468899998874 5543 344445789999999999987764 222335788999999999987753
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.25 E-value=6.4e-14 Score=130.91 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=45.7
Q ss_pred CCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCccc
Q 010910 241 CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 320 (497)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (497)
+.-|-.|++++|.+.. +....+.+..|+.|.|+++.+....+..+.+ ++.|+.|.+++.+ -+...++.-..++.||
T Consensus 149 LtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~Tq-RTl~N~Ptsld~l~NL 224 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQ-RTLDNIPTSLDDLHNL 224 (1255)
T ss_pred hHhHhhhccccchhhh--cCHHHHHHhhhhhhhcCCChhhHHHHhcCcc-chhhhhhhccccc-chhhcCCCchhhhhhh
Confidence 3444455555544321 1122233445555555555544433333322 3444455554431 2222222223334556
Q ss_pred CeeeccCCCCCChHHHHHHhhcCCCCCEEeecC
Q 010910 321 KNLTLSDCYFLSDMGLEAIATGCKELTHLEING 353 (497)
Q Consensus 321 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 353 (497)
..++++.+. ++. ++.....+++|+.|+|++
T Consensus 225 ~dvDlS~N~-Lp~--vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 225 RDVDLSENN-LPI--VPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhccccccC-CCc--chHHHhhhhhhheeccCc
Confidence 666665543 221 222223356666666665
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.24 E-value=2.2e-13 Score=127.45 Aligned_cols=323 Identities=16% Similarity=0.118 Sum_probs=183.2
Q ss_pred cchhhHHHHHhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCC----
Q 010910 125 LSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE---- 200 (497)
Q Consensus 125 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---- 200 (497)
++...+..-.+.+.+++-|.|.... + ..++.-+.++.+|++|.+.+|.+... ...+. .+|.|+.+.+..+.
T Consensus 19 Fsg~~FP~~v~qMt~~~WLkLnrt~-L--~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs-~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 19 FSGDRFPHDVEQMTQMTWLKLNRTK-L--EQVPEELSRLQKLEHLSMAHNQLISV-HGELS-DLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred CCCCcCchhHHHhhheeEEEechhh-h--hhChHHHHHHhhhhhhhhhhhhhHhh-hhhhc-cchhhHHHhhhccccccC
Confidence 3433444444556788888887531 2 23344455788999999998875321 12222 34677777776542
Q ss_pred CCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCC
Q 010910 201 GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (497)
Q Consensus 201 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (497)
++. ..+..+ ..|+.|+++++. +.+. ..-....+++-.|++++|++.... ..++-+++.|-.|+|+.+.+.
T Consensus 94 GiP-~diF~l-----~dLt~lDLShNq-L~Ev--P~~LE~AKn~iVLNLS~N~IetIP-n~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 94 GIP-TDIFRL-----KDLTILDLSHNQ-LREV--PTNLEYAKNSIVLNLSYNNIETIP-NSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred CCC-chhccc-----ccceeeecchhh-hhhc--chhhhhhcCcEEEEcccCccccCC-chHHHhhHhHhhhccccchhh
Confidence 122 222232 678889988842 2221 111235678889999998765432 234445777888898877764
Q ss_pred hHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChh
Q 010910 281 DEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTM 360 (497)
Q Consensus 281 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 360 (497)
. +..-.+.+.+|++|.++++. +....+..+. +++.|+.|.+++... +-..++.-...+.+|..++++. ++++..
T Consensus 164 ~--LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLP-smtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~v 237 (1255)
T KOG0444|consen 164 M--LPPQIRRLSMLQTLKLSNNP-LNHFQLRQLP-SMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSE-NNLPIV 237 (1255)
T ss_pred h--cCHHHHHHhhhhhhhcCCCh-hhHHHHhcCc-cchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccc-cCCCcc
Confidence 3 22223346788999998742 3222333332 356777788877542 2222233334577889999987 344322
Q ss_pred HHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHH
Q 010910 361 GLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGI 440 (497)
Q Consensus 361 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 440 (497)
+.-.-.+++|+.|++++ +.+++..... ....+|++|+++.+ +++ .++.....+++|++|.+.++. ++.+++
T Consensus 238 --Pecly~l~~LrrLNLS~-N~iteL~~~~--~~W~~lEtLNlSrN-QLt--~LP~avcKL~kL~kLy~n~Nk-L~FeGi 308 (1255)
T KOG0444|consen 238 --PECLYKLRNLRRLNLSG-NKITELNMTE--GEWENLETLNLSRN-QLT--VLPDAVCKLTKLTKLYANNNK-LTFEGI 308 (1255)
T ss_pred --hHHHhhhhhhheeccCc-CceeeeeccH--HHHhhhhhhccccc-hhc--cchHHHhhhHHHHHHHhccCc-ccccCC
Confidence 22223368999999998 7776643211 12467788888764 333 233333346667777666653 444333
Q ss_pred HHHH-----------------------hhCCCCCeEeeccccccc-chhHHhhhhhccccc
Q 010910 441 VAVG-----------------------EHCNSLTELSLRFCDRYG-KFFSPQLHSYSHFHL 477 (497)
Q Consensus 441 ~~~~-----------------------~~~~~L~~L~l~~~~~l~-~~~~~~l~~l~~~~~ 477 (497)
+..+ ..|++|+.|.++.+.-++ +++|.-+..+..+.+
T Consensus 309 PSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred ccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeec
Confidence 3222 356666666666654444 355555555554443
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=6.9e-10 Score=97.17 Aligned_cols=113 Identities=22% Similarity=0.310 Sum_probs=62.2
Q ss_pred hCCCCceEeccCCC--CCCHHHHHHHHhhcccCccEEecCCCCCCChHHHH------------HHHhcCCCCcEEEccCC
Q 010910 187 VCNQLEDLNLRFCE--GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLE------------AVGSHCKSLETLSLDSE 252 (497)
Q Consensus 187 ~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~------------~~~~~~~~L~~L~l~~~ 252 (497)
.+|+|++|+++++. .-....+..++..| .+|++|.+.+|. +....-. .....-+.|+.+....|
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~-~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSC-TDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhc-cCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34555555555542 11123444444444 456666555553 1111111 11233468888888887
Q ss_pred CCChhH---HHHHHhcCCCCcEEEeecCCCChHHHHHH---HhcCCCCceeeccc
Q 010910 253 FIHNKG---VHAVAQGCPLLRVLKLQCINVTDEALVAV---GNQCLSLELLALYS 301 (497)
Q Consensus 253 ~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~l~~l---~~~~~~L~~L~l~~ 301 (497)
.+.+.+ +...++..|.|+.+.+..+.+...+...+ ..+|++|+.|++..
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc
Confidence 766554 34445667889999998888876655332 23456666666654
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=8.4e-12 Score=112.01 Aligned_cols=212 Identities=19% Similarity=0.145 Sum_probs=118.9
Q ss_pred HHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHh
Q 010910 160 AQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS 239 (497)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 239 (497)
-.++.+|+++.|+++.+...+.....+.|++++.|+++.+-...-..+..++... |+|+.|+++.+. +....-.....
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL-p~Le~LNls~Nr-l~~~~~s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL-PSLENLNLSSNR-LSNFISSNTTL 194 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhc-ccchhccccccc-ccCCccccchh
Confidence 3467788888888888776666566677888888888875322223444555544 788888887642 11100011112
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCC-CChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCc
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCK 318 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 318 (497)
.+++|+.|.++.|+++...+..+...+|+|+.|.+..|. +....... ..+..|+.|+|++.+.++.+.+... ..+|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-~~l~ 271 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-GTLP 271 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-cccc
Confidence 466777777777777777777777777777777776553 22111111 1235677777776554443333222 2366
Q ss_pred ccCeeeccCCCCCChHH-----HHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecC
Q 010910 319 KLKNLTLSDCYFLSDMG-----LEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALL 378 (497)
Q Consensus 319 ~L~~L~l~~~~~~~~~~-----~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 378 (497)
+|..|+++.+. +.+.. .......++.|+.|++..++...+..+..+.. +++|+.|.+.
T Consensus 272 ~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~-l~nlk~l~~~ 334 (505)
T KOG3207|consen 272 GLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT-LENLKHLRIT 334 (505)
T ss_pred chhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhc-cchhhhhhcc
Confidence 77777766654 22211 11222346667777766643323333333322 4566666543
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.5e-11 Score=109.01 Aligned_cols=207 Identities=21% Similarity=0.142 Sum_probs=115.9
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCc-HhHHHHHhhCCCCceEeccCCCCCCH---HHHHHHH
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGD-QGLAAVGKVCNQLEDLNLRFCEGLTD---TGLVDLA 211 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~ 211 (497)
.+..|+.+.|.++. +...+.....+.|++++.|+|+.+-+.. ..+..+++.+|+|+.|+++.+.-... .....
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~-- 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL-- 195 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh--
Confidence 34556666777653 4444444566677888888887775433 34566666777788887776531111 11111
Q ss_pred hhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCC-CChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhc
Q 010910 212 HGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQ 290 (497)
Q Consensus 212 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~ 290 (497)
.+.|+.|.++.|. +....+..+...+|+|+.|.+++|. +...... ...+..|+.|+|+++.+.+.........
T Consensus 196 ---l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 196 ---LSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred ---hhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccccc
Confidence 1677777777775 4466666666777888888777763 2111111 1224567777777666655443344445
Q ss_pred CCCCceeecccccCCCHH-----HHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecC
Q 010910 291 CLSLELLALYSFQQFTDK-----GLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEING 353 (497)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 353 (497)
+|.|+.|.++.+. +..- ........+++|+.|++..+.......+..+.. +++|+.|.+..
T Consensus 270 l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~-l~nlk~l~~~~ 335 (505)
T KOG3207|consen 270 LPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT-LENLKHLRITL 335 (505)
T ss_pred ccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhc-cchhhhhhccc
Confidence 6777777776542 2111 111122336777777777765322233334332 66666666544
No 21
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.08 E-value=4.6e-11 Score=75.14 Aligned_cols=43 Identities=42% Similarity=0.666 Sum_probs=35.7
Q ss_pred cCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeec
Q 010910 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRI 52 (497)
Q Consensus 9 ~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~ 52 (497)
+.||+||+.+||+||+ .+|+.++++|||+|++++.....|.++
T Consensus 2 ~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~~~lW~~~ 44 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIANDNSLWRRL 44 (47)
T ss_dssp CCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred hHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence 3799999999999999 899999999999999997655666544
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.87 E-value=1.3e-08 Score=102.01 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=90.0
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
.+|++|++++...+...-...+...+|+|++|.+.+..+....+..+..++|+|..|++++++++.- .-.+++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 5677777777655555555666667777777777776666666677777777777777776666542 2223456666
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHH----HHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCC
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMG----LEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 371 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 371 (497)
.|.+.+..-.+...+..+.. +.+|+.|+++......+.. ..+....+|+|+.|+.++ ..+..+.+..+...-|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence 66665543333344444444 6667777766644333221 111222456666666665 44555555555554455
Q ss_pred CcEEe
Q 010910 372 LTELA 376 (497)
Q Consensus 372 L~~L~ 376 (497)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 55444
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.87 E-value=1.8e-10 Score=113.11 Aligned_cols=283 Identities=19% Similarity=0.142 Sum_probs=138.5
Q ss_pred CCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCC
Q 010910 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (497)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 243 (497)
++|+.|..+.|.+....... .-.+|++++++...... +..+...| .+|+.+++.++. +... ...+ ....+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~---lp~wi~~~-~nle~l~~n~N~-l~~l-p~ri-~~~~~ 288 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSN---LPEWIGAC-ANLEALNANHNR-LVAL-PLRI-SRITS 288 (1081)
T ss_pred cchheeeeccCcceeecccc---ccccceeeecchhhhhc---chHHHHhc-ccceEecccchh-HHhh-HHHH-hhhhh
Confidence 56666666666544111111 12466667666543111 11333333 567777666532 2111 1111 13345
Q ss_pred CcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCee
Q 010910 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (497)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (497)
|+.|.+..|.+.. +.....+.+.|++|+|..+.+..-.-..+......++.|..+....-+.... -....+.|+.|
T Consensus 289 L~~l~~~~nel~y--ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~--~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 289 LVSLSAAYNELEY--IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY--EENNHAALQEL 364 (1081)
T ss_pred HHHHHhhhhhhhh--CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc--cchhhHHHHHH
Confidence 5555555443221 1222233566777777655554311100000001122222211100000000 00113457777
Q ss_pred eccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEec
Q 010910 324 TLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHL 403 (497)
Q Consensus 324 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 403 (497)
.+.++. ++|..++.+. ++++|+.|+++++ .+....-..+ .+++.|++|++++ +.++... ..+ ..|+.|++|..
T Consensus 365 ylanN~-Ltd~c~p~l~-~~~hLKVLhLsyN-rL~~fpas~~-~kle~LeeL~LSG-NkL~~Lp-~tv-a~~~~L~tL~a 437 (1081)
T KOG0618|consen 365 YLANNH-LTDSCFPVLV-NFKHLKVLHLSYN-RLNSFPASKL-RKLEELEELNLSG-NKLTTLP-DTV-ANLGRLHTLRA 437 (1081)
T ss_pred HHhcCc-ccccchhhhc-cccceeeeeeccc-ccccCCHHHH-hchHHhHHHhccc-chhhhhh-HHH-HhhhhhHHHhh
Confidence 777764 6776666654 4888888888874 3332222222 3357888888888 6665543 222 24777888776
Q ss_pred cCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccccc--ccchhHHhhhhhc
Q 010910 404 VDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDR--YGKFFSPQLHSYS 473 (497)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~~~~~~l~~l~ 473 (497)
.++ .+. .++.++ .++.|+.++++.+. ++...+.... -.|+|++|+++|+.+ ++...++.+..+.
T Consensus 438 hsN-~l~--~fPe~~-~l~qL~~lDlS~N~-L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 438 HSN-QLL--SFPELA-QLPQLKVLDLSCNN-LSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred cCC-cee--echhhh-hcCcceEEecccch-hhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhh
Confidence 553 333 244444 47888888888764 6665555543 236788888888863 2333444444333
No 24
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.1e-09 Score=93.78 Aligned_cols=195 Identities=17% Similarity=0.175 Sum_probs=103.8
Q ss_pred HHHHHHHhcCCCCcEEEccCCCCChh-HHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHH
Q 010910 232 VSLEAVGSHCKSLETLSLDSEFIHNK-GVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGL 310 (497)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 310 (497)
..+..+...++.++++++.+|.+++. .+..+.+++|.|+.|++++|.+.... ..+.....+|+.|-+.|. .+.-...
T Consensus 61 gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT-~L~w~~~ 138 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGT-GLSWTQS 138 (418)
T ss_pred hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCC-CCChhhh
Confidence 33444445555666666666655543 35555566666666666666554321 111112356666666553 2333444
Q ss_pred HHHhccCcccCeeeccCCC----CCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChH
Q 010910 311 HAVGKGCKKLKNLTLSDCY----FLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNL 386 (497)
Q Consensus 311 ~~l~~~~~~L~~L~l~~~~----~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 386 (497)
..+...+|.+++|+++.+. ++.++..+. .-+.+++|++..|....+.....+.+.+|++..+-+..| -+.+.
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~-PlK~~ 214 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG-PLKTE 214 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC-cccch
Confidence 4444556666666665542 112211111 234566666666655555556666666777777777664 23333
Q ss_pred HHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 387 ALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
....-...+|.+--|.++. .++.+..-..-...+|.|..|.+++.|
T Consensus 215 s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 215 SSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred hhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence 3333334456666666665 345444333333457777777777766
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.78 E-value=6.1e-09 Score=104.84 Aligned_cols=267 Identities=18% Similarity=0.090 Sum_probs=153.8
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
.+-..|+++.+ .++. ++.-+ .++|+.|++.+|.++.. ....++|++|+++++. +.... . ..++
T Consensus 201 ~~~~~LdLs~~-~Lts--LP~~l--~~~L~~L~L~~N~Lt~L-----P~lp~~Lk~LdLs~N~-LtsLP--~----lp~s 263 (788)
T PRK15387 201 NGNAVLNVGES-GLTT--LPDCL--PAHITTLVIPDNNLTSL-----PALPPELRTLEVSGNQ-LTSLP--V----LPPG 263 (788)
T ss_pred CCCcEEEcCCC-CCCc--CCcch--hcCCCEEEccCCcCCCC-----CCCCCCCcEEEecCCc-cCccc--C----cccc
Confidence 44667777764 3442 11111 24788999988876532 2234789999998763 33211 1 1268
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCcee
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 297 (497)
|+.|++.++. +. .+. ...++|+.|++++|.+..- ....++|+.|++++|.+..- . ....+|+.|
T Consensus 264 L~~L~Ls~N~-L~--~Lp---~lp~~L~~L~Ls~N~Lt~L-----P~~p~~L~~LdLS~N~L~~L--p---~lp~~L~~L 327 (788)
T PRK15387 264 LLELSIFSNP-LT--HLP---ALPSGLCKLWIFGNQLTSL-----PVLPPGLQELSVSDNQLASL--P---ALPSELCKL 327 (788)
T ss_pred cceeeccCCc-hh--hhh---hchhhcCEEECcCCccccc-----cccccccceeECCCCccccC--C---CCccccccc
Confidence 8888887753 22 111 2335788888888766532 12347788888887766531 1 112467777
Q ss_pred ecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEec
Q 010910 298 ALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELAL 377 (497)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 377 (497)
.+.++. ++. ++. ...+|+.|++++|. ++. +....++|+.|+++++ .+.. +.. ..++|+.|++
T Consensus 328 ~Ls~N~-L~~--LP~---lp~~Lq~LdLS~N~-Ls~-----LP~lp~~L~~L~Ls~N-~L~~--LP~---l~~~L~~LdL 389 (788)
T PRK15387 328 WAYNNQ-LTS--LPT---LPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYNN-RLTS--LPA---LPSGLKELIV 389 (788)
T ss_pred ccccCc-ccc--ccc---cccccceEecCCCc-cCC-----CCCCCcccceehhhcc-cccc--Ccc---cccccceEEe
Confidence 776642 221 111 12468888888764 332 1122456777777763 3432 222 2357888888
Q ss_pred CCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecc
Q 010910 378 LYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRF 457 (497)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 457 (497)
++ +.++... ...++|+.|+++++ .++. ++.. ..+|+.|++++|. ++. +..-..++++|+.|++++
T Consensus 390 s~-N~Lt~LP-----~l~s~L~~LdLS~N-~Lss--IP~l---~~~L~~L~Ls~Nq-Lt~--LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 390 SG-NRLTSLP-----VLPSELKELMVSGN-RLTS--LPML---PSGLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEG 454 (788)
T ss_pred cC-CcccCCC-----CcccCCCEEEccCC-cCCC--CCcc---hhhhhhhhhccCc-ccc--cChHHhhccCCCeEECCC
Confidence 87 4555311 12367888888875 4442 2222 3467778888774 552 333334678888888888
Q ss_pred cccccchhHHhhhh
Q 010910 458 CDRYGKFFSPQLHS 471 (497)
Q Consensus 458 ~~~l~~~~~~~l~~ 471 (497)
| .++....+.+..
T Consensus 455 N-~Ls~~~~~~L~~ 467 (788)
T PRK15387 455 N-PLSERTLQALRE 467 (788)
T ss_pred C-CCCchHHHHHHH
Confidence 8 577655555543
No 26
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.78 E-value=3.6e-08 Score=98.88 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=89.1
Q ss_pred CCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCC
Q 010910 292 LSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 371 (497)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 371 (497)
.+|++|+++|...+.......+...+|+|++|.+.+-. +....+..+..++|+|..|++++++ +++. .-.+.+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCC-ccCc---HHHhcccc
Confidence 56777777665544444445555556777777776643 3444466666667777777777643 3322 11223566
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHH-HHHHHH---HcCCCCcEEecccccccCHHHHHHHHhhC
Q 010910 372 LTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDD-AICSIA---EGCQNLKKLHIRRCYKIGNNGIVAVGEHC 447 (497)
Q Consensus 372 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 447 (497)
|+.|.+.+-.-.+...+..++. +++|+.|+++......+. .+.... ..+|+|+.|+.++.. ++.+.++.+.+.-
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH 274 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSH 274 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhC
Confidence 7776666522222234444443 677777777664333322 111111 236777777777654 6666677666666
Q ss_pred CCCCeEeeccc
Q 010910 448 NSLTELSLRFC 458 (497)
Q Consensus 448 ~~L~~L~l~~~ 458 (497)
|+|+.+..-+|
T Consensus 275 ~~L~~i~~~~~ 285 (699)
T KOG3665|consen 275 PNLQQIAALDC 285 (699)
T ss_pred ccHhhhhhhhh
Confidence 66666654433
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.65 E-value=3.4e-08 Score=99.62 Aligned_cols=244 Identities=18% Similarity=0.102 Sum_probs=153.5
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
++|+.|.+.+. .++.-. ...++|++|++++|.+.... ...++|++|++.++. +.. +..+ +++
T Consensus 222 ~~L~~L~L~~N-~Lt~LP-----~lp~~Lk~LdLs~N~LtsLP-----~lp~sL~~L~Ls~N~-L~~--Lp~l----p~~ 283 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLP-----ALPPELRTLEVSGNQLTSLP-----VLPPGLLELSIFSNP-LTH--LPAL----PSG 283 (788)
T ss_pred cCCCEEEccCC-cCCCCC-----CCCCCCcEEEecCCccCccc-----CcccccceeeccCCc-hhh--hhhc----hhh
Confidence 47899998874 344321 23589999999999865321 234789999998774 322 2221 267
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCcee
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 297 (497)
|+.|+++++. +... ....++|+.|++++|.+.... ...++|+.|.+.++.+.. +. ...++|+.|
T Consensus 284 L~~L~Ls~N~-Lt~L-----P~~p~~L~~LdLS~N~L~~Lp-----~lp~~L~~L~Ls~N~L~~--LP---~lp~~Lq~L 347 (788)
T PRK15387 284 LCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDNQLASLP-----ALPSELCKLWAYNNQLTS--LP---TLPSGLQEL 347 (788)
T ss_pred cCEEECcCCc-cccc-----cccccccceeECCCCccccCC-----CCcccccccccccCcccc--cc---ccccccceE
Confidence 9999998863 3321 123578999999998765421 123568888888777653 11 122579999
Q ss_pred ecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEec
Q 010910 298 ALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELAL 377 (497)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 377 (497)
+++++ .++. ++ ...++|+.|.++++. ++. +. ....+|+.|+++++ .++. +.. ..++|+.|++
T Consensus 348 dLS~N-~Ls~--LP---~lp~~L~~L~Ls~N~-L~~--LP---~l~~~L~~LdLs~N-~Lt~--LP~---l~s~L~~LdL 409 (788)
T PRK15387 348 SVSDN-QLAS--LP---TLPSELYKLWAYNNR-LTS--LP---ALPSGLKELIVSGN-RLTS--LPV---LPSELKELMV 409 (788)
T ss_pred ecCCC-ccCC--CC---CCCcccceehhhccc-ccc--Cc---ccccccceEEecCC-cccC--CCC---cccCCCEEEc
Confidence 99875 3331 11 123578888887754 332 22 23467999999884 4432 111 2368999999
Q ss_pred CCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHH
Q 010910 378 LYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAV 443 (497)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 443 (497)
++ +.++.. .. ...+|+.|+++++ .++. ++.-...+++|+.|++++|+ ++......+
T Consensus 410 S~-N~LssI--P~---l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 410 SG-NRLTSL--PM---LPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGNP-LSERTLQAL 465 (788)
T ss_pred cC-CcCCCC--Cc---chhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCCC-CCchHHHHH
Confidence 98 556532 11 1357888888874 5552 33333468899999999987 776555444
No 28
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.64 E-value=2.4e-08 Score=60.96 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=34.0
Q ss_pred CCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccce
Q 010910 11 LPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTT 49 (497)
Q Consensus 11 LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~ 49 (497)
||+|++.+||.|++ ..|+.++++|||+|+.+......|
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999 799999999999999997655444
No 29
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.58 E-value=1.8e-08 Score=63.76 Aligned_cols=40 Identities=38% Similarity=0.502 Sum_probs=32.3
Q ss_pred cCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccce
Q 010910 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTT 49 (497)
Q Consensus 9 ~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~ 49 (497)
.+||+|++.+||+||+ ..|++++++|||+|++++.....|
T Consensus 4 ~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~~~~ 43 (48)
T PF00646_consen 4 SDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSPRLW 43 (48)
T ss_dssp HHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred HHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCCCcc
Confidence 3799999999999999 899999999999999997654443
No 30
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.57 E-value=1.8e-06 Score=73.52 Aligned_cols=259 Identities=17% Similarity=0.129 Sum_probs=132.1
Q ss_pred HHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCC-CHHHHHHHHhhcccCccEEecCCCCCCChHHHHH
Q 010910 158 SLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL-TDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEA 236 (497)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 236 (497)
.-+..+..+++++|++|.++.+....+++...+-+.|.+.+.... +...-..+. .+|+ .+..
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~----~~L~-------------~Ll~ 86 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELY----SNLV-------------MLLK 86 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHH----HHHH-------------HHHH
Confidence 334457899999999999998888888765544444433321100 000000000 0111 0111
Q ss_pred HHhcCCCCcEEEccCCCCChhH---HHHHHhcCCCCcEEEeecCCCChHH-------HHHHH-----hcCCCCceeeccc
Q 010910 237 VGSHCKSLETLSLDSEFIHNKG---VHAVAQGCPLLRVLKLQCINVTDEA-------LVAVG-----NQCLSLELLALYS 301 (497)
Q Consensus 237 ~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~-------l~~l~-----~~~~~L~~L~l~~ 301 (497)
..-.||.|+..+++.|.+.... +..++...+.|++|.++++.+.... +..++ ..-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 1235677777777766654433 3344445566777777666554321 11111 2346777776644
Q ss_pred cc--CCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHh----hcCCCCCEEeecCCCCCChhHHHHHHh---hCCCC
Q 010910 302 FQ--QFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIA----TGCKELTHLEINGCHNIGTMGLESIGK---FCRNL 372 (497)
Q Consensus 302 ~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L 372 (497)
+. +.+...+......-.+|+.+.+.++. +..+++..+. ..+.+|+.|+|.+ +.++..+-..++. .++.|
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchh
Confidence 32 12222333333333577888877764 5555443322 2367788888877 3444444333332 24667
Q ss_pred cEEecCCCCCCChHHHHHHHh-----cCCCCcEEeccCCC----CCCHHHHHHHH-HcCCCCcEEecccccccCH
Q 010910 373 TELALLYCQRIGNLALLEVGR-----GCKSLQALHLVDCS----SIGDDAICSIA-EGCQNLKKLHIRRCYKIGN 437 (497)
Q Consensus 373 ~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~----~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 437 (497)
++|.+..| -++..+...+.+ ..|+|..|...++. .+.+.++..+- .+.|-|..|.+.++. +.+
T Consensus 245 rEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~E 317 (388)
T COG5238 245 RELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IKE 317 (388)
T ss_pred hhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-chh
Confidence 78887776 333333333322 23777777665531 12222233332 246667777777664 443
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=2.2e-07 Score=79.93 Aligned_cols=207 Identities=12% Similarity=0.129 Sum_probs=135.7
Q ss_pred CCCEEEccCcccCcH-hHHHHHhhCCCCceEeccCCCCCCH-HHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCC
Q 010910 165 HLKSLDLQGCYVGDQ-GLAAVGKVCNQLEDLNLRFCEGLTD-TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 242 (497)
Q Consensus 165 ~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (497)
-++-+.+.++.++.+ ....++..+..++.+++.++. +++ ..+..+..+. |.|+.|+++.++-... +........
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~l-P~l~~LNls~N~L~s~--I~~lp~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQL-PALTTLNLSCNSLSSD--IKSLPLPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcC-ccceEeeccCCcCCCc--cccCccccc
Confidence 344566677776554 466777778899999998874 444 4566777766 8999999987542221 111111345
Q ss_pred CCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCC-----ChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccC
Q 010910 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV-----TDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGC 317 (497)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 317 (497)
+|+.|-+.++++.......+...+|.+++|+++.|.+ .++..+. ..+.++++...+|....-.....+.+-+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 8899999998888888888888888888888865532 2211111 1256666776666433233344455567
Q ss_pred cccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCC
Q 010910 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYC 380 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 380 (497)
|++..+.+..|+ +.+.....-...+|.+-.|+|+..+.-++..+.++.. +|.|..|.+++.
T Consensus 199 pnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~-f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 199 PNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNG-FPQLVDLRVSEN 259 (418)
T ss_pred ccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccccHHHHHHHcC-CchhheeeccCC
Confidence 888888888876 4444444444557777788887755456677777765 688999988873
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=1.3e-07 Score=77.59 Aligned_cols=129 Identities=21% Similarity=0.198 Sum_probs=43.6
Q ss_pred cccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 010910 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKS 397 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 397 (497)
.++++|+++++. ++. +..+...+.+|+.|+++++.--+-+++. .++.|++|++++ +.++..+- .+...+|+
T Consensus 19 ~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~----~L~~L~~L~L~~-N~I~~i~~-~l~~~lp~ 89 (175)
T PF14580_consen 19 VKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQITKLEGLP----GLPRLKTLDLSN-NRISSISE-GLDKNLPN 89 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--S-S---S-CH-HHHHH-TT
T ss_pred cccccccccccc-ccc--ccchhhhhcCCCEEECCCCCCccccCcc----ChhhhhhcccCC-CCCCcccc-chHHhCCc
Confidence 346666666653 222 2333333567777777774322222222 257788888877 66665321 22234778
Q ss_pred CcEEeccCCCCCCHH-HHHHHHHcCCCCcEEecccccccCHH--HHHHHHhhCCCCCeEeeccc
Q 010910 398 LQALHLVDCSSIGDD-AICSIAEGCQNLKKLHIRRCYKIGNN--GIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 398 L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 458 (497)
|+.|.++++ .+.+. .+..+ +.+|+|+.|++.+|| +++. --..+...+|+|+.||-...
T Consensus 90 L~~L~L~~N-~I~~l~~l~~L-~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 90 LQELYLSNN-KISDLNELEPL-SSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp --EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCEEECcCC-cCCChHHhHHH-HcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 888888764 44332 22233 358888888888887 4432 23344467888888876544
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.36 E-value=4.9e-08 Score=96.45 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=113.5
Q ss_pred CCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCe
Q 010910 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 322 (497)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (497)
+|++++++.+.+..-. .....|++|+.+....+.+..-. ..+. ...+|+.|.+..+. ...+.....+...|+.
T Consensus 242 nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~l~~lp-~ri~-~~~~L~~l~~~~ne---l~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLP--EWIGACANLEALNANHNRLVALP-LRIS-RITSLVSLSAAYNE---LEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cceeeecchhhhhcch--HHHHhcccceEecccchhHHhhH-HHHh-hhhhHHHHHhhhhh---hhhCCCcccccceeee
Confidence 6777777766544322 44555777777777766663211 1111 12444444443321 0111112222445555
Q ss_pred eeccCCCCCC---hHHH-------HHHh--------------hcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecC
Q 010910 323 LTLSDCYFLS---DMGL-------EAIA--------------TGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALL 378 (497)
Q Consensus 323 L~l~~~~~~~---~~~~-------~~l~--------------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 378 (497)
|++..+. +. +..+ ..+- ...+.|+.|.+.+ +.+++..+..+ ..+++|+.|+++
T Consensus 315 LdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l-~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 315 LDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVL-VNFKHLKVLHLS 391 (1081)
T ss_pred eeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhh-ccccceeeeeec
Confidence 5555432 11 1000 0000 0123344555555 44555555444 346788888888
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 379 YCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+ +.+....-..+ ..++.|+.|+++|+ .++. ++.-...++.|+.|...++. +. .++.++ .+++|+.+|++-+
T Consensus 392 y-NrL~~fpas~~-~kle~LeeL~LSGN-kL~~--Lp~tva~~~~L~tL~ahsN~-l~--~fPe~~-~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 392 Y-NRLNSFPASKL-RKLEELEELNLSGN-KLTT--LPDTVANLGRLHTLRAHSNQ-LL--SFPELA-QLPQLKVLDLSCN 462 (1081)
T ss_pred c-cccccCCHHHH-hchHHhHHHhcccc-hhhh--hhHHHHhhhhhHHHhhcCCc-ee--echhhh-hcCcceEEecccc
Confidence 7 44443222222 34677888888874 4443 33333457778887776664 32 233443 6888999999776
Q ss_pred ccccchhHHh---hhhhccccccCc
Q 010910 459 DRYGKFFSPQ---LHSYSHFHLGCL 480 (497)
Q Consensus 459 ~~l~~~~~~~---l~~l~~~~~~~~ 480 (497)
+++...+.+ ..++++++++++
T Consensus 463 -~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 463 -NLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred -hhhhhhhhhhCCCcccceeeccCC
Confidence 676655544 246777777655
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=2.5e-05 Score=66.73 Aligned_cols=215 Identities=18% Similarity=0.158 Sum_probs=100.9
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCC---CCcEEEeecCC---CChHH---H---HHHHhcCCCCceeeccccc--CC
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCP---LLRVLKLQCIN---VTDEA---L---VAVGNQCLSLELLALYSFQ--QF 305 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~---~~~~~---l---~~l~~~~~~L~~L~l~~~~--~~ 305 (497)
.+..++++++++|.+..+....+..... +|+..+++... ..+.. + ....-.||+|+..+++.+. .-
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4677788888888777776666655443 34444433111 11111 1 1112246777777776531 11
Q ss_pred CHHHHHHHhccCcccCeeeccCCCCCChHH-------HHHHh-----hcCCCCCEEeecCCCC--CChhHHHHHHhhCCC
Q 010910 306 TDKGLHAVGKGCKKLKNLTLSDCYFLSDMG-------LEAIA-----TGCKELTHLEINGCHN--IGTMGLESIGKFCRN 371 (497)
Q Consensus 306 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-------~~~l~-----~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~ 371 (497)
....+..+..+.+.|++|.+++|. +.... +..+. ..-|.|+......+.. -+...+....+.-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 233344444455667777776654 32211 11111 1235666665554211 111222223333346
Q ss_pred CcEEecCCCCCCChHHHHHHH----hcCCCCcEEeccCCCCCCHHHHHHHHH---cCCCCcEEecccccccCHHHHHHHH
Q 010910 372 LTELALLYCQRIGNLALLEVG----RGCKSLQALHLVDCSSIGDDAICSIAE---GCQNLKKLHIRRCYKIGNNGIVAVG 444 (497)
Q Consensus 372 L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~ 444 (497)
|+++.+.+ +.|...++..+. ..+.+|+.|++.++ .++..+-..++. ..+.|+.|.+.+|- ++..++..+.
T Consensus 187 lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~ 263 (388)
T COG5238 187 LKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVL 263 (388)
T ss_pred ceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHH
Confidence 66666665 455444333221 13566666666653 444333333322 23456666666663 4444433333
Q ss_pred h-----hCCCCCeEeeccc
Q 010910 445 E-----HCNSLTELSLRFC 458 (497)
Q Consensus 445 ~-----~~~~L~~L~l~~~ 458 (497)
. ..|+|+.|...|+
T Consensus 264 ~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHhhhhcCCCccccccchh
Confidence 2 3455666666555
No 35
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=8.3e-07 Score=72.20 Aligned_cols=105 Identities=23% Similarity=0.353 Sum_probs=72.7
Q ss_pred CCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCc
Q 010910 346 LTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLK 425 (497)
Q Consensus 346 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 425 (497)
++.++-++ ..+..+++..+.. ++.++.|.+.+|..++|..+..+....++|+.|+|++|+.|++.++.-+.. +++|+
T Consensus 103 IeaVDAsd-s~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred EEEEecCC-chHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 34555555 3466677766643 688888888888888888888887777888888888888888888777764 88888
Q ss_pred EEecccccccCHHH--HHHHHhhCCCCCeE
Q 010910 426 KLHIRRCYKIGNNG--IVAVGEHCNSLTEL 453 (497)
Q Consensus 426 ~L~l~~~~~~~~~~--~~~~~~~~~~L~~L 453 (497)
.|.|.+-+.+.... ...+-+.+|+++..
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 88888776554322 22333566666443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=4.9e-07 Score=74.21 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=10.6
Q ss_pred CCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCC
Q 010910 241 CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (497)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (497)
+|+|++|.+++|.+.+..-......+|+|+.|++.+|.+
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 444444444444443321111122345555555544444
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.24 E-value=4.1e-06 Score=85.23 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
.+...|.+.+. .++.... .+ .++|+.|++++|.+..-. ..+ .++|++|+++++. +... . ....++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~-~I---p~~L~~L~Ls~N~LtsLP-~~l---~~nL~~L~Ls~N~-LtsL--P---~~l~~~ 242 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPA-CI---PEQITTLILDNNELKSLP-ENL---QGNIKTLYANSNQ-LTSI--P---ATLPDT 242 (754)
T ss_pred cCceEEEeCCC-CcCcCCc-cc---ccCCcEEEecCCCCCcCC-hhh---ccCCCEEECCCCc-cccC--C---hhhhcc
Confidence 35667777653 2332111 11 257888888887765321 122 2578888887763 2211 0 111246
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCC
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (497)
|+.|+++++. +...+ ..+ .++|+.|++++|.+.. +.. ...++|+.|+++++.+.
T Consensus 243 L~~L~Ls~N~-L~~LP-~~l---~s~L~~L~Ls~N~L~~--LP~--~l~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 243 IQEMELSINR-ITELP-ERL---PSALQSLDLFHNKISC--LPE--NLPEELRYLSVYDNSIR 296 (754)
T ss_pred ccEEECcCCc-cCcCC-hhH---hCCCCEEECcCCccCc--ccc--ccCCCCcEEECCCCccc
Confidence 7777777754 22111 111 2467777777665542 111 11246777777666554
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.17 E-value=7.9e-06 Score=83.23 Aligned_cols=259 Identities=15% Similarity=0.121 Sum_probs=147.0
Q ss_pred CCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCC
Q 010910 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (497)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 243 (497)
.+...|++++..++.. ...+. ++|+.|+++++. +..... ...++|+.|+++++. +..... . ..++
T Consensus 178 ~~~~~L~L~~~~LtsL-P~~Ip---~~L~~L~Ls~N~-LtsLP~-----~l~~nL~~L~Ls~N~-LtsLP~-~---l~~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLTTI-PACIP---EQITTLILDNNE-LKSLPE-----NLQGNIKTLYANSNQ-LTSIPA-T---LPDT 242 (754)
T ss_pred cCceEEEeCCCCcCcC-Ccccc---cCCcEEEecCCC-CCcCCh-----hhccCCCEEECCCCc-cccCCh-h---hhcc
Confidence 3678888888765432 11222 578899998774 332111 112589999998763 332111 1 1247
Q ss_pred CcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCee
Q 010910 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (497)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (497)
|+.|++++|.+..-. ..+ .++|+.|+++++.+.. +.. ...++|+.|+++++. ++. ++... .++|+.|
T Consensus 243 L~~L~Ls~N~L~~LP-~~l---~s~L~~L~Ls~N~L~~--LP~--~l~~sL~~L~Ls~N~-Lt~--LP~~l--p~sL~~L 309 (754)
T PRK15370 243 IQEMELSINRITELP-ERL---PSALQSLDLFHNKISC--LPE--NLPEELRYLSVYDNS-IRT--LPAHL--PSGITHL 309 (754)
T ss_pred ccEEECcCCccCcCC-hhH---hCCCCEEECcCCccCc--ccc--ccCCCCcEEECCCCc-ccc--Ccccc--hhhHHHH
Confidence 899999888765321 111 2578999998877763 111 113578999988753 321 11100 1357778
Q ss_pred eccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEec
Q 010910 324 TLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHL 403 (497)
Q Consensus 324 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 403 (497)
++++|. ++. +.. ...++|+.|+++++. ++.. .. ..+++|+.|++++ +.++... ..+ .++|+.|++
T Consensus 310 ~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~-Lt~L--P~--~l~~sL~~L~Ls~-N~L~~LP-~~l---p~~L~~LdL 374 (754)
T PRK15370 310 NVQSNS-LTA--LPE--TLPPGLKTLEAGENA-LTSL--PA--SLPPELQVLDVSK-NQITVLP-ETL---PPTITTLDV 374 (754)
T ss_pred HhcCCc-ccc--CCc--cccccceeccccCCc-cccC--Ch--hhcCcccEEECCC-CCCCcCC-hhh---cCCcCEEEC
Confidence 887764 332 111 113678888888753 3321 11 1136888888888 4554311 111 368888888
Q ss_pred cCCCCCCHHHHHHHHHcCCCCcEEecccccccCH--HHHHHHHhhCCCCCeEeecccccccchhHHhhhhh
Q 010910 404 VDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGN--NGIVAVGEHCNSLTELSLRFCDRYGKFFSPQLHSY 472 (497)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 472 (497)
++| .++... ..+. ++|+.|++++|. ++. ..+..+...++++..|++.++ .++...++.++.+
T Consensus 375 s~N-~Lt~LP-~~l~---~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~~L~~L 438 (754)
T PRK15370 375 SRN-ALTNLP-ENLP---AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQNMQRL 438 (754)
T ss_pred CCC-cCCCCC-HhHH---HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCC-CccHHHHHHHHHh
Confidence 886 443211 1121 257788888875 442 234455556688888888888 5666556555443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.12 E-value=1.5e-06 Score=89.87 Aligned_cols=108 Identities=22% Similarity=0.183 Sum_probs=64.3
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCC--HHHHHHHHhh
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT--DTGLVDLAHG 213 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~ 213 (497)
.++.|++|-+..............+..+|.|+.||+++|.-..+.+..++. +-+|++|+++++. +. +.++..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~-I~~LP~~l~~L--- 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTG-ISHLPSGLGNL--- 617 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCC-ccccchHHHHH---
Confidence 456788877765321011222334567888888888876533444445543 3578888888764 33 4455555
Q ss_pred cccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 010910 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSE 252 (497)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 252 (497)
+.|.+|++......... ..+...+++|++|.+...
T Consensus 618 --k~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 618 --KKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRS 652 (889)
T ss_pred --Hhhheeccccccccccc--cchhhhcccccEEEeecc
Confidence 67888888765432222 333445778888887664
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.09 E-value=4.8e-07 Score=80.98 Aligned_cols=109 Identities=22% Similarity=0.181 Sum_probs=62.1
Q ss_pred hCC-CCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCC--CCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHH
Q 010910 162 KCI-HLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE--GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238 (497)
Q Consensus 162 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 238 (497)
.+| .-.+++|..|.+.......+. ..++|+.|+++.+. .+.+..+..+ ++|.+|-+.+.+.+++..-..+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N~Is~I~p~AF~GL-----~~l~~Lvlyg~NkI~~l~k~~F- 136 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKNNISFIAPDAFKGL-----ASLLSLVLYGNNKITDLPKGAF- 136 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhcc-chhhhceecccccchhhcChHhhhhh-----HhhhHHHhhcCCchhhhhhhHh-
Confidence 344 677888888887654444443 45788899888763 3344444444 5566666666555555443333
Q ss_pred hcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCC
Q 010910 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN 278 (497)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 278 (497)
.++..++.|.+..+.+.-.- ...++.+++|..|.+..+.
T Consensus 137 ~gL~slqrLllNan~i~Cir-~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIR-QDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhHHHHHHHhcChhhhcchh-HHHHHHhhhcchhcccchh
Confidence 35666666666555443222 2223446666666665443
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2.9e-06 Score=69.14 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=79.9
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCC
Q 010910 371 NLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSL 450 (497)
Q Consensus 371 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 450 (497)
.++.++-++ ..|...++..+. +++.++.|.+.+|..+.|..+..+..-.++|+.|+|++|+.||+.++..+. .+++|
T Consensus 102 ~IeaVDAsd-s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASD-SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCC-chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 467777777 578888888764 599999999999999999999999888899999999999999999999885 79999
Q ss_pred CeEeecccccccchh
Q 010910 451 TELSLRFCDRYGKFF 465 (497)
Q Consensus 451 ~~L~l~~~~~l~~~~ 465 (497)
+.|.+.+-+.+...+
T Consensus 179 r~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLE 193 (221)
T ss_pred HHHHhcCchhhhchH
Confidence 999999987666533
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.05 E-value=1.4e-06 Score=75.26 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=16.9
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecC
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCI 277 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 277 (497)
.+.+|+.+.++.+.. ..+..+...-|.|+.+.+...
T Consensus 212 ~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 212 AFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred Hhhhhheeeeeccch--hheeceeecCchhheeeeecc
Confidence 345666666655421 222222223366666666443
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.05 E-value=6.3e-07 Score=80.26 Aligned_cols=138 Identities=22% Similarity=0.140 Sum_probs=78.4
Q ss_pred HHHHHhhC-CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHH---
Q 010910 130 LNALADGF-SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDT--- 205 (497)
Q Consensus 130 l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--- 205 (497)
+..+...+ +....++|... .++..+ ...++.+++||+|||++|.++......+. .+++|.+|.+.+...+.+.
T Consensus 58 L~eVP~~LP~~tveirLdqN-~I~~iP-~~aF~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQN-QISSIP-PGAFKTLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cccCcccCCCcceEEEeccC-CcccCC-hhhccchhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCCchhhhhhh
Confidence 33333334 46667777752 344322 34456789999999999998766655554 4577777777765455543
Q ss_pred HHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCC
Q 010910 206 GLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN 278 (497)
Q Consensus 206 ~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 278 (497)
.+..+ .+|+.|.+.-+. +. -..+.....++++..|.+.++.+.... ...++.+..++.+.+..+.
T Consensus 135 ~F~gL-----~slqrLllNan~-i~-Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGL-----SSLQRLLLNANH-IN-CIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhH-----HHHHHHhcChhh-hc-chhHHHHHHhhhcchhcccchhhhhhc-cccccchhccchHhhhcCc
Confidence 33333 455555554321 11 122333457888888888765432211 1122345667777775443
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=1.6e-06 Score=74.95 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=70.1
Q ss_pred hcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCc
Q 010910 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCK 318 (497)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 318 (497)
..+..|+++++++|.+.. +....+-.|.++.|+++.|.+... ..++ .+++|..|+++++. ...+..+-..+-
T Consensus 281 dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v--~nLa-~L~~L~~LDLS~N~---Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTV--QNLA-ELPQLQLLDLSGNL---LAECVGWHLKLG 352 (490)
T ss_pred chHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeee--hhhh-hcccceEeecccch---hHhhhhhHhhhc
Confidence 345677888888776542 223334568888888877776542 2222 35777788877642 122333334466
Q ss_pred ccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCCh-hHHHHHHhhCCCCcEEecCC
Q 010910 319 KLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGT-MGLESIGKFCRNLTELALLY 379 (497)
Q Consensus 319 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~ 379 (497)
|++.|.++++. + +.+..+.+ +-+|..|+++++ ++.. +.+..+ ..+|.|+.+.+.+
T Consensus 353 NIKtL~La~N~-i--E~LSGL~K-LYSLvnLDl~~N-~Ie~ldeV~~I-G~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 353 NIKTLKLAQNK-I--ETLSGLRK-LYSLVNLDLSSN-QIEELDEVNHI-GNLPCLETLRLTG 408 (490)
T ss_pred CEeeeehhhhh-H--hhhhhhHh-hhhheecccccc-chhhHHHhccc-ccccHHHHHhhcC
Confidence 77777777643 1 22333332 556777777763 3322 222222 2356666666655
No 45
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.77 E-value=1.7e-06 Score=77.76 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=57.5
Q ss_pred hcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 010910 341 TGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEG 420 (497)
Q Consensus 341 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 420 (497)
..+++|..|+++++ -+.+-.. .+ ..+..|+.|+++. +.+.. +.........++.+-.+. .++.......+ ..
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~LP~-e~-~~lv~Lq~LnlS~-NrFr~--lP~~~y~lq~lEtllas~-nqi~~vd~~~l-~n 503 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDLPE-EM-GSLVRLQTLNLSF-NRFRM--LPECLYELQTLETLLASN-NQIGSVDPSGL-KN 503 (565)
T ss_pred Hhhhcceeeecccc-hhhhcch-hh-hhhhhhheecccc-ccccc--chHHHhhHHHHHHHHhcc-ccccccChHHh-hh
Confidence 34677777777763 2222111 11 1134577777776 32211 111111122333333332 23332222222 34
Q ss_pred CCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc
Q 010910 421 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459 (497)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (497)
+.+|..|++.++. + ..++.+.++|.+|++|++.|++
T Consensus 504 m~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCCCc-h--hhCChhhccccceeEEEecCCc
Confidence 7789999999886 3 2466666899999999999986
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.55 E-value=3.3e-05 Score=80.15 Aligned_cols=107 Identities=21% Similarity=0.105 Sum_probs=57.2
Q ss_pred hCCCCCEEEccCccc-CcHhHHHHHhhCCCCceEeccCCCCCC--HHHHHHHHhhcccCccEEecCCCCCCChHHHHHHH
Q 010910 162 KCIHLKSLDLQGCYV-GDQGLAAVGKVCNQLEDLNLRFCEGLT--DTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238 (497)
Q Consensus 162 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 238 (497)
.+++|++|-+..+.. -......+...+|.|+.|++++|.... +..+..+ -+|++|++++.. +. .++.-.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L-----i~LryL~L~~t~-I~--~LP~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL-----VHLRYLDLSDTG-IS--HLPSGL 614 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh-----hhhhcccccCCC-cc--ccchHH
Confidence 345677777776641 112222333456778888887664332 2344444 467777777643 22 222223
Q ss_pred hcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecC
Q 010910 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCI 277 (497)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 277 (497)
..+..|.+|++..+..... +..+...+++|++|.+...
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLES-IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHHhhheecccccccccc-ccchhhhcccccEEEeecc
Confidence 4566777777766432111 1333344677888877433
No 47
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.52 E-value=2e-05 Score=71.13 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=67.6
Q ss_pred hccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHh
Q 010910 314 GKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR 393 (497)
Q Consensus 314 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 393 (497)
...+++|..|+++++. +.+-. ..+. .+..|+.|+++.+ .+.. .+........++.+-.++ +++.......+ .
T Consensus 431 l~~l~kLt~L~L~NN~-Ln~LP-~e~~-~lv~Lq~LnlS~N-rFr~--lP~~~y~lq~lEtllas~-nqi~~vd~~~l-~ 502 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNL-LNDLP-EEMG-SLVRLQTLNLSFN-RFRM--LPECLYELQTLETLLASN-NQIGSVDPSGL-K 502 (565)
T ss_pred HHhhhcceeeecccch-hhhcc-hhhh-hhhhhheeccccc-cccc--chHHHhhHHHHHHHHhcc-ccccccChHHh-h
Confidence 3447889999999864 33322 2222 3667999999874 2211 112211123344444444 55555444433 3
Q ss_pred cCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccC
Q 010910 394 GCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIG 436 (497)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 436 (497)
++.+|.+|++..+ .+ ..++...++|.+|++|++++++ +.
T Consensus 503 nm~nL~tLDL~nN-dl--q~IPp~LgnmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNN-DL--QQIPPILGNMTNLRHLELDGNP-FR 541 (565)
T ss_pred hhhhcceeccCCC-ch--hhCChhhccccceeEEEecCCc-cC
Confidence 4789999999764 33 3466677789999999999997 54
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.20 E-value=2.6e-05 Score=75.76 Aligned_cols=137 Identities=22% Similarity=0.261 Sum_probs=66.4
Q ss_pred HHHHHhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCc-HhHHHHHhhCCCCceEeccCCCCCCHHHHH
Q 010910 130 LNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGD-QGLAAVGKVCNQLEDLNLRFCEGLTDTGLV 208 (497)
Q Consensus 130 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 208 (497)
+..+.+-++.++.|.+...+.-.......++ .+..||+|.++++++.. .++..+- .+|++|-..+. -.++.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~S----l~Al~ 147 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNS----LDALR 147 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhcc----HHHHH
Confidence 3444555677777777654433332222233 36899999999988643 3333332 35555543321 12222
Q ss_pred HHHhhcc---------cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCC
Q 010910 209 DLAHGCG---------KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (497)
Q Consensus 209 ~l~~~~~---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (497)
.++..|. ..|...+.+++. -..+....+-++.|+.|+++.|.+.+-. ....|++|++|+|++|.+
T Consensus 148 ~v~ascggd~~ns~~Wn~L~~a~fsyN~---L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 148 HVFASCGGDISNSPVWNKLATASFSYNR---LVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred HHHHHhccccccchhhhhHhhhhcchhh---HHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchh
Confidence 2222221 122233333211 1112222234556667777666655433 334567777777766554
Q ss_pred C
Q 010910 280 T 280 (497)
Q Consensus 280 ~ 280 (497)
.
T Consensus 222 ~ 222 (1096)
T KOG1859|consen 222 R 222 (1096)
T ss_pred c
Confidence 3
No 49
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.08 E-value=0.00042 Score=36.79 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=15.8
Q ss_pred CCCCCeEeecccccccchhHHhhh
Q 010910 447 CNSLTELSLRFCDRYGKFFSPQLH 470 (497)
Q Consensus 447 ~~~L~~L~l~~~~~l~~~~~~~l~ 470 (497)
|++|+.|++++|+.+++.|+..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466677777777667776666554
No 50
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.02 E-value=0.0011 Score=64.11 Aligned_cols=324 Identities=23% Similarity=0.239 Sum_probs=169.6
Q ss_pred CcEEeeccCCCcChHHHHHHH---HhCCCCCEEEccCcccCcHhHHHHHhhCC----CCceEeccCCCCCCHH---HHHH
Q 010910 140 LEKLSLIWCSNISSLGLMSLA---QKCIHLKSLDLQGCYVGDQGLAAVGKVCN----QLEDLNLRFCEGLTDT---GLVD 209 (497)
Q Consensus 140 L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~---~~~~ 209 (497)
+..+.+.+|. +.+.....+. ...+.|..|+++++.+.+++...+.+..+ .|++|.+..|. ++.. .+..
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHH
Confidence 5556666653 4444444443 34567788888888877777766665433 34556666653 3222 2333
Q ss_pred HHhhcccCccEEecCCCCCCChHHHHHH---Hh----cCCCCcEEEccCCCCChhHHHHHH---hcCCC-CcEEEeecCC
Q 010910 210 LAHGCGKSLKSLGIAACVKITDVSLEAV---GS----HCKSLETLSLDSEFIHNKGVHAVA---QGCPL-LRVLKLQCIN 278 (497)
Q Consensus 210 l~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~-L~~L~l~~~~ 278 (497)
.... ...++.+++..+... ......+ .. ...++++|+++++.++......+. ...++ +.++++.++.
T Consensus 167 ~L~~-~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 167 VLEK-NEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHhc-ccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 3333 356777777665432 2111111 11 345677888888777665544333 23344 5567777777
Q ss_pred CChHHHHHHHhcC----CCCceeecccccCCCHH---HHHHHhccCcccCeeeccCCCCCChHHHHHHhhc---CCCCCE
Q 010910 279 VTDEALVAVGNQC----LSLELLALYSFQQFTDK---GLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATG---CKELTH 348 (497)
Q Consensus 279 ~~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~ 348 (497)
+.+..+..+...+ +.++.+++..+. +++. .+......+++++.+.+..+. +.+......... ...+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~ 322 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEALERKTPLLH 322 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHHhhhcccchh
Confidence 7777666555433 344777776653 3333 233344456778888887765 555544433332 345555
Q ss_pred EeecCCCCCChhHHHHHHh--hC-CCCcEEecCCCCCCChHHHHHHHh--c--CCCCcEEeccCCCCCCHHHHHH---HH
Q 010910 349 LEINGCHNIGTMGLESIGK--FC-RNLTELALLYCQRIGNLALLEVGR--G--CKSLQALHLVDCSSIGDDAICS---IA 418 (497)
Q Consensus 349 L~l~~~~~~~~~~~~~l~~--~~-~~L~~L~l~~~~~~~~~~~~~~~~--~--~~~L~~L~l~~~~~~~~~~~~~---~~ 418 (497)
+.+.+++.........+.. .. ..+....+++ +...+........ . -+.+..+.+..+ .+...+... ..
T Consensus 323 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~ 400 (478)
T KOG4308|consen 323 LVLGGTGKGTRGGTSVLAEADAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNSQ-VIEGRGALRLAAQL 400 (478)
T ss_pred hhccccCccchhHHHHHHHHHHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhcc-ccccHHHHHhhhhh
Confidence 5665433332222111111 11 2222333333 4444443333221 1 234566666554 232223222 23
Q ss_pred HcCCCCcEEecccccccCHHHHHHHH----hhCCCCCeEeecccccccchhHHhhhhhcc
Q 010910 419 EGCQNLKKLHIRRCYKIGNNGIVAVG----EHCNSLTELSLRFCDRYGKFFSPQLHSYSH 474 (497)
Q Consensus 419 ~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 474 (497)
...+.++.++++.+. ..++....+. .+. .++.++++.+ .++..+.+++.....
T Consensus 401 ~~~~~l~~~~l~~n~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~~~~~~ 457 (478)
T KOG4308|consen 401 ASNEKLEILDLSLNS-LHDEGAEVLTEQLSRNG-SLKALRLSRN-PITALGTEELQRALA 457 (478)
T ss_pred hhcchhhhhhhhcCc-cchhhHHHHHHhhhhcc-cchhhhhccC-hhhhcchHHHHHHHh
Confidence 357888888888775 3343333332 445 7888888887 677666666655444
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.00 E-value=6.1e-05 Score=73.34 Aligned_cols=39 Identities=15% Similarity=0.063 Sum_probs=19.9
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCC
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIH 255 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 255 (497)
++++.|.+-..+.-.......++ -+..|+.|.+.++.+.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLS 122 (1096)
T ss_pred hhheeeeecccCCCCCCCCceec-cccceeeEEecCcchh
Confidence 56666666554322222111121 4567777777776554
No 52
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.75 E-value=0.001 Score=64.42 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=33.3
Q ss_pred ccEEecCCCCCCChHHHHHH---HhcCCCCcEEEccCCCCChhHHHHHHhcCCC----CcEEEeecCCCCh
Q 010910 218 LKSLGIAACVKITDVSLEAV---GSHCKSLETLSLDSEFIHNKGVHAVAQGCPL----LRVLKLQCINVTD 281 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~ 281 (497)
+..|.+.+|. +.......+ ....+.|+.|+++++.+.+.+...+...++. ++.|.+..+.+..
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~ 158 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS 158 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc
Confidence 5555555543 222233333 3445577777777777777776666554433 3344444444433
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.58 E-value=0.0028 Score=33.58 Aligned_cols=24 Identities=33% Similarity=0.805 Sum_probs=14.6
Q ss_pred CCCCcEEecccccccCHHHHHHHH
Q 010910 421 CQNLKKLHIRRCYKIGNNGIVAVG 444 (497)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~ 444 (497)
||+|++|++++|+.+++.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666666666665554
No 54
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.47 E-value=4.9e-05 Score=60.29 Aligned_cols=128 Identities=21% Similarity=0.144 Sum_probs=73.7
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCC-CChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHN-IGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGC 395 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 395 (497)
+.+|+.|++.++. +.+ +..-...++.|+.|+++-+.. +...++ ..+|.|+.|++.+ +++.+..+..-+-.+
T Consensus 55 l~nlevln~~nnq-ie~--lp~~issl~klr~lnvgmnrl~~lprgf----gs~p~levldlty-nnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTY-NNLNENSLPGNFFYM 126 (264)
T ss_pred hhhhhhhhcccch-hhh--cChhhhhchhhhheecchhhhhcCcccc----CCCchhhhhhccc-cccccccCCcchhHH
Confidence 5667777776643 322 222223477788887764211 111222 2368888888887 666665554433335
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
..|+.|.++++ .+. .++.-...+++|+.|.+.++..++ +..-...+.+|++|.|.++
T Consensus 127 ~tlralyl~dn-dfe--~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 127 TTLRALYLGDN-DFE--ILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHhcCC-Ccc--cCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHHHHhcccc
Confidence 66777777663 221 222233457788888888876443 3333345667888888887
No 55
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.31 E-value=0.0026 Score=55.76 Aligned_cols=42 Identities=40% Similarity=0.572 Sum_probs=35.6
Q ss_pred cCCCHHHHHHHHcc-----CCCccchhhHHhhhHHHHHhhhcccceee
Q 010910 9 TCLPDEVILEIFRH-----LDSKASRDACSLVCRRWLTLERLSRTTLR 51 (497)
Q Consensus 9 ~~LP~evl~~If~~-----L~~~~d~~~~~~vcr~W~~~~~~~~~~~~ 51 (497)
+.||||||..||.. ++ .+++-++|+|||.|+..++.+..|..
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d-~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLD-LRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcc-hhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 57999999999974 45 58999999999999999887766653
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.0015 Score=56.42 Aligned_cols=103 Identities=28% Similarity=0.344 Sum_probs=66.4
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (497)
+.+.++|+..+|. ++|.. +...++.|+.|.|+- +.++. +..+ ..|++|++|+|.. +.|.+..-....+++|
T Consensus 18 l~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSv-NkIss--L~pl-~rCtrLkElYLRk-N~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSV-NKISS--LAPL-QRCTRLKELYLRK-NCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCC-ccHHH---HHHhcccceeEEeec-ccccc--chhH-HHHHHHHHHHHHh-cccccHHHHHHHhcCc
Confidence 4567788888875 66633 344588899988886 33432 2222 3478899999987 6676655555566789
Q ss_pred CCcEEeccCCCCCCHHH---HHHHHHcCCCCcEEe
Q 010910 397 SLQALHLVDCSSIGDDA---ICSIAEGCQNLKKLH 428 (497)
Q Consensus 397 ~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~ 428 (497)
+|+.|-|..++-....+ -....+.+|||++|+
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99988886643222221 122345688888876
No 57
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.24 E-value=0.00027 Score=47.14 Aligned_cols=37 Identities=19% Similarity=0.058 Sum_probs=17.7
Q ss_pred cCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 420 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 420 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
.+++|+.|++++|. ++...... ..++++|++|++++|
T Consensus 23 ~l~~L~~L~l~~N~-l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSNNN-LTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETSSS-ESEEETTT-TTTSTTESEEEETSS
T ss_pred CCCCCCEeEccCCc-cCccCHHH-HcCCCCCCEEeCcCC
Confidence 35555555555543 33211111 235556666666555
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.19 E-value=0.00092 Score=44.56 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (497)
|+|+.|+++++ .++... ...+..+++|++|++++|.+.......+ ..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~N~l~~i~~~~f-~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSNNNLTSIPPDAF-SNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEEC-TTTTTTGTTESEEEETSSSESEEETTTT-TTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccCCccCccCHHHH-cCCCCCCEEeCcCC
Confidence 46677777764 243221 1233456777777777776543332222 34566666666654
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.10 E-value=0.007 Score=36.90 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=24.4
Q ss_pred CCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccc
Q 010910 422 QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGK 463 (497)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 463 (497)
++|+.|+++++. +++ +.....++++|++|++++| ++++
T Consensus 1 ~~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCC-CCCC
Confidence 467888888874 664 3332357888888888888 4553
No 60
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.09 E-value=0.0041 Score=57.38 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=32.7
Q ss_pred cCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhh
Q 010910 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLER 44 (497)
Q Consensus 9 ~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~ 44 (497)
+.||+|+|..|..+|+..-|+++.+.|||.||.+..
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 469999999999999767899999999999999843
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.06 E-value=0.0026 Score=56.18 Aligned_cols=48 Identities=31% Similarity=0.468 Sum_probs=41.0
Q ss_pred ccccccCCC----HHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeecc
Q 010910 4 HDRINTCLP----DEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIG 53 (497)
Q Consensus 4 ~~~~~~~LP----~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~ 53 (497)
.|.|. .|| ++|.+.||+||+ ..++..+-+||++|+++....-.|..+.
T Consensus 72 rDFi~-~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 72 RDFIT-ALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HHHHH-hcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 46774 899 999999999999 6999999999999999977666665544
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.02 E-value=0.013 Score=54.84 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHh
Q 010910 160 AQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS 239 (497)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 239 (497)
+..++++++|++++|.+..-. ...++|++|.+.+|..+.... ...+++|++|.+++|..+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP-----~~LP~nLe~L~Ls~Cs~L~s-------- 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLP-----GSIPEGLEKLTVCHCPEISG-------- 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCC-----chhhhhhhheEccCcccccc--------
Confidence 345799999999998654321 233579999999886542211 11236899999988754431
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCC-CChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCc
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCK 318 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 318 (497)
-.++|+.|++..+.... +..-.++|+.|.+.... ......... -.++|++|.+.+|...... ..+ -.
T Consensus 110 LP~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP--~~L---P~ 177 (426)
T PRK15386 110 LPESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILP--EKL---PE 177 (426)
T ss_pred cccccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCc--ccc---cc
Confidence 12468888876543321 11122457777763211 100000000 1257888888776533110 001 13
Q ss_pred ccCeeeccCC
Q 010910 319 KLKNLTLSDC 328 (497)
Q Consensus 319 ~L~~L~l~~~ 328 (497)
+|+.|.++.+
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 6777776553
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.00094 Score=57.26 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=5.9
Q ss_pred CCCCcEEEeecCCC
Q 010910 266 CPLLRVLKLQCINV 279 (497)
Q Consensus 266 ~~~L~~L~l~~~~~ 279 (497)
+|+|+++++++|.+
T Consensus 90 ~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 90 APNLKVLNLSGNKI 103 (260)
T ss_pred CCceeEEeecCCcc
Confidence 34444444444433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.98 E-value=0.011 Score=55.29 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=9.4
Q ss_pred cCCCCcEEEccCCCC
Q 010910 240 HCKSLETLSLDSEFI 254 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~ 254 (497)
.++++++|+++++.+
T Consensus 50 ~~~~l~~L~Is~c~L 64 (426)
T PRK15386 50 EARASGRLYIKDCDI 64 (426)
T ss_pred HhcCCCEEEeCCCCC
Confidence 356777777766543
No 65
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.97 E-value=7e-05 Score=59.45 Aligned_cols=153 Identities=20% Similarity=0.097 Sum_probs=87.5
Q ss_pred CCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCC
Q 010910 266 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE 345 (497)
Q Consensus 266 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 345 (497)
+.++++|.++++.++... ..++ .+.+|+.|.+.+.. .+.++.-..++++|+.|+++-+. +.. +..-+..+|-
T Consensus 32 ~s~ITrLtLSHNKl~~vp-pnia-~l~nlevln~~nnq---ie~lp~~issl~klr~lnvgmnr-l~~--lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVP-PNIA-ELKNLEVLNLSNNQ---IEELPTSISSLPKLRILNVGMNR-LNI--LPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhcccCceeecC-CcHH-Hhhhhhhhhcccch---hhhcChhhhhchhhhheecchhh-hhc--CccccCCCch
Confidence 355667777766664321 1122 25678888876532 22333333457889998887543 110 1122234889
Q ss_pred CCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCc
Q 010910 346 LTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLK 425 (497)
Q Consensus 346 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 425 (497)
|+.|++.++ ++....+..=+..+..|+-|+++. +.+.- +..-...+++|+-|.+.++.-++ ++.-...+..|+
T Consensus 104 levldltyn-nl~e~~lpgnff~m~tlralyl~d-ndfe~--lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lr 176 (264)
T KOG0617|consen 104 LEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGD-NDFEI--LPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLR 176 (264)
T ss_pred hhhhhcccc-ccccccCCcchhHHHHHHHHHhcC-CCccc--CChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHH
Confidence 999999884 444433222122236677778876 43321 11112347888888888754333 334344577899
Q ss_pred EEeccccc
Q 010910 426 KLHIRRCY 433 (497)
Q Consensus 426 ~L~l~~~~ 433 (497)
+|+|.++.
T Consensus 177 elhiqgnr 184 (264)
T KOG0617|consen 177 ELHIQGNR 184 (264)
T ss_pred HHhcccce
Confidence 99999985
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.89 E-value=0.0024 Score=54.87 Aligned_cols=37 Identities=27% Similarity=0.116 Sum_probs=16.5
Q ss_pred CCCCcEEecccccccCH--HHHHHHHhhCCCCCeEeeccc
Q 010910 421 CQNLKKLHIRRCYKIGN--NGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 421 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+++|..|++.+|. .+. ..-+.++.-+|+|++|+-.++
T Consensus 115 l~nL~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 LENLKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcchhhhhcccCC-ccccccHHHHHHHHhhhhcccccccc
Confidence 4555555555554 211 112222334556655554443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.0035 Score=54.30 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=38.0
Q ss_pred CCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCC
Q 010910 163 CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 242 (497)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (497)
+.+.++|++-+|.++|.. +...++.|+.|.++-+. ++. +.. +..| .+|++|.+..+. +.+..-.....++|
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk-Iss--L~p-l~rC-trLkElYLRkN~-I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK-ISS--LAP-LQRC-TRLKELYLRKNC-IESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccc-ccc--chh-HHHH-HHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence 345666666666665543 23344666666666442 211 111 1222 455555555432 22222222334555
Q ss_pred CCcEEEccCC
Q 010910 243 SLETLSLDSE 252 (497)
Q Consensus 243 ~L~~L~l~~~ 252 (497)
+|+.|.|..|
T Consensus 89 sLr~LWL~EN 98 (388)
T KOG2123|consen 89 SLRTLWLDEN 98 (388)
T ss_pred hhhhHhhccC
Confidence 5666555543
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.44 E-value=0.0054 Score=50.55 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=49.1
Q ss_pred cCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHH-HHHHHhcCCCCcEEeccCCCCCCHHHHHH--HH
Q 010910 342 GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLA-LLEVGRGCKSLQALHLVDCSSIGDDAICS--IA 418 (497)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~ 418 (497)
.++.|.+|.+.+ +.++... ..+...+|+|+.|.+.+ +++...+ +..+ ..||+|+.|.+-++ .+++..-.. +.
T Consensus 62 ~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pL-a~~p~L~~Ltll~N-pv~~k~~YR~yvl 136 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRID-PDLDTFLPNLKTLILTN-NSIQELGDLDPL-ASCPKLEYLTLLGN-PVEHKKNYRLYVL 136 (233)
T ss_pred CccccceEEecC-Ccceeec-cchhhhccccceEEecC-cchhhhhhcchh-ccCCccceeeecCC-chhcccCceeEEE
Confidence 467788888877 3443322 22334468888888877 5554432 2223 24788888887764 333222111 22
Q ss_pred HcCCCCcEEecccc
Q 010910 419 EGCQNLKKLHIRRC 432 (497)
Q Consensus 419 ~~~~~L~~L~l~~~ 432 (497)
..+|+|+.|++.+-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 34788888888764
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.32 E-value=0.012 Score=30.44 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=11.4
Q ss_pred CCCCCeEeecccccccchhHHhh
Q 010910 447 CNSLTELSLRFCDRYGKFFSPQL 469 (497)
Q Consensus 447 ~~~L~~L~l~~~~~l~~~~~~~l 469 (497)
|++|++|++++| +++++|++.+
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHh
Confidence 355666666666 4666666554
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.32 E-value=0.026 Score=34.40 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=16.8
Q ss_pred CCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCC
Q 010910 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (497)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (497)
+|++|+++++.+.+- ...+..+++|+.|+++++.+.
T Consensus 2 ~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL--PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc--CchHhCCCCCCEEEecCCCCC
Confidence 455555555555432 222344555555555555444
No 71
>PLN03150 hypothetical protein; Provisional
Probab=95.19 E-value=0.038 Score=56.36 Aligned_cols=61 Identities=20% Similarity=0.098 Sum_probs=30.1
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
+++|+.|++++ +.+....... ...+++|+.|+++++ .++.. ++.....+++|+.|++++|.
T Consensus 441 L~~L~~L~Ls~-N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~-iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 441 LRHLQSINLSG-NSIRGNIPPS-LGSITSLEVLDLSYN-SFNGS-IPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCCCEEECCC-CcccCcCChH-HhCCCCCCEEECCCC-CCCCC-CchHHhcCCCCCEEECcCCc
Confidence 56666666665 3343221111 234566666666654 33321 22222346666666666654
No 72
>PLN03150 hypothetical protein; Provisional
Probab=94.71 E-value=0.073 Score=54.29 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=60.5
Q ss_pred cCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCc
Q 010910 320 LKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQ 399 (497)
Q Consensus 320 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 399 (497)
++.|+++++. +.......+. .+++|+.|+|+++. +... +......+++|+.|++++ +.+.......+ ..+++|+
T Consensus 420 v~~L~L~~n~-L~g~ip~~i~-~L~~L~~L~Ls~N~-l~g~-iP~~~~~l~~L~~LdLs~-N~lsg~iP~~l-~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDIS-KLRHLQSINLSGNS-IRGN-IPPSLGSITSLEVLDLSY-NSFNGSIPESL-GQLTSLR 493 (623)
T ss_pred EEEEECCCCC-ccccCCHHHh-CCCCCCEEECCCCc-ccCc-CChHHhCCCCCCEEECCC-CCCCCCCchHH-hcCCCCC
Confidence 5667777654 3322222333 47888888888743 3322 222334578888888888 55554333333 3578888
Q ss_pred EEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 400 ALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 400 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
.|+++++ .++......+.....++..+++.+|+
T Consensus 494 ~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCC-cccccCChHHhhccccCceEEecCCc
Confidence 8888875 34322222222223456667776654
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.88 E-value=0.057 Score=27.80 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=14.0
Q ss_pred CCCCCEEEccCcccCcHhHHHHH
Q 010910 163 CIHLKSLDLQGCYVGDQGLAAVG 185 (497)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~ 185 (497)
+++|++|+|++|.++++++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36777777777777777666654
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.53 E-value=0.044 Score=45.37 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=15.7
Q ss_pred hCCCCCEEEccCcccCcH-hHHHHHhhCCCCceEeccCC
Q 010910 162 KCIHLKSLDLQGCYVGDQ-GLAAVGKVCNQLEDLNLRFC 199 (497)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 199 (497)
.+|+|+.|.+.+|.+..- .+..++ .||+|++|.+-++
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGN 123 (233)
T ss_pred hccccceEEecCcchhhhhhcchhc-cCCccceeeecCC
Confidence 345555555555543221 122222 3445555554443
No 75
>PF13013 F-box-like_2: F-box-like domain
Probab=93.01 E-value=0.098 Score=38.98 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHccCCCccchhhHHhhhH
Q 010910 10 CLPDEVILEIFRHLDSKASRDACSLVCR 37 (497)
Q Consensus 10 ~LP~evl~~If~~L~~~~d~~~~~~vcr 37 (497)
+||+||+..||.|+. ..+...+...|+
T Consensus 24 DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 24 DLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred hChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 699999999999999 689988888888
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.32 E-value=0.13 Score=49.50 Aligned_cols=171 Identities=22% Similarity=0.192 Sum_probs=94.0
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhC-CCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhccc
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKC-IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 216 (497)
+.++.|.+.+.. ++ .+....... ++|+.|+++++.+.... ..+ ..+++|+.|++..+. +.+..... . ..+
T Consensus 116 ~~l~~L~l~~n~-i~--~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~-~~l~~L~~L~l~~N~-l~~l~~~~--~-~~~ 186 (394)
T COG4886 116 TNLTSLDLDNNN-IT--DIPPLIGLLKSNLKELDLSDNKIESLP-SPL-RNLPNLKNLDLSFND-LSDLPKLL--S-NLS 186 (394)
T ss_pred cceeEEecCCcc-cc--cCccccccchhhcccccccccchhhhh-hhh-hccccccccccCCch-hhhhhhhh--h-hhh
Confidence 567777776532 22 223333334 38999999988765431 122 355889999998874 33222111 0 127
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCC-CChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
.|+.|++++.. +..... ......+|+++.++++. ... ......++++..+.+..+.+... ......++.++
T Consensus 187 ~L~~L~ls~N~-i~~l~~--~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~ 258 (394)
T COG4886 187 NLNNLDLSGNK-ISDLPP--EIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLE 258 (394)
T ss_pred hhhheeccCCc-cccCch--hhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeeec--cchhccccccc
Confidence 88889888853 222111 11234458888888773 221 12223456666666655544331 12233456788
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCC
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 329 (497)
.|+++++. +... .. .....+++.|++++..
T Consensus 259 ~L~~s~n~-i~~i--~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 259 TLDLSNNQ-ISSI--SS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred eecccccc-cccc--cc-ccccCccCEEeccCcc
Confidence 88887653 2211 11 3346788888888754
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.62 E-value=0.045 Score=42.33 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=30.5
Q ss_pred CCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCC
Q 010910 343 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDC 406 (497)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (497)
...|+..+|+++ .+.+-. ..+...+|.++.|++++ +.+.+...+ ++ .+|.|+.|+++.+
T Consensus 52 ~~el~~i~ls~N-~fk~fp-~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~aLr~lNl~~N 110 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKKFP-KKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMPALRSLNLRFN 110 (177)
T ss_pred CceEEEEecccc-hhhhCC-HHHhhccchhhhhhcch-hhhhhchHH-Hh-hhHHhhhcccccC
Confidence 445555666652 222111 23334456666677766 555554433 22 3667777777654
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.42 E-value=0.2 Score=48.20 Aligned_cols=146 Identities=23% Similarity=0.162 Sum_probs=83.3
Q ss_pred CCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHH-HHHHHHhhcccC
Q 010910 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDT-GLVDLAHGCGKS 217 (497)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~ 217 (497)
+|+.|++++.. +.. +..-...+++|+.|+++++.+.+...... ..++|+.|.+++.. +... ..... ...
T Consensus 141 nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~L~~L~ls~N~-i~~l~~~~~~----~~~ 210 (394)
T COG4886 141 NLKELDLSDNK-IES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLS--NLSNLNNLDLSGNK-ISDLPPEIEL----LSA 210 (394)
T ss_pred hcccccccccc-hhh--hhhhhhccccccccccCCchhhhhhhhhh--hhhhhhheeccCCc-cccCchhhhh----hhh
Confidence 78888887632 322 21234568888888888887654332221 33688888888764 2221 11111 134
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCcee
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 297 (497)
|++|.+++........ ....+.++..+.+.++.+... ......++.++.|+++++.+.+... .....+++.|
T Consensus 211 L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L 282 (394)
T COG4886 211 LEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS---LGSLTNLREL 282 (394)
T ss_pred hhhhhhcCCcceecch---hhhhcccccccccCCceeeec--cchhccccccceecccccccccccc---ccccCccCEE
Confidence 7888877753222111 123456666666655544331 2334556778888888777765332 3345788888
Q ss_pred ecccc
Q 010910 298 ALYSF 302 (497)
Q Consensus 298 ~l~~~ 302 (497)
++++.
T Consensus 283 ~~s~n 287 (394)
T COG4886 283 DLSGN 287 (394)
T ss_pred eccCc
Confidence 88764
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.72 E-value=0.36 Score=25.92 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=17.8
Q ss_pred CCCCEEEccCcccCcHhHHHHHhh
Q 010910 164 IHLKSLDLQGCYVGDQGLAAVGKV 187 (497)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~ 187 (497)
++|++|+|++|.+.+++...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 567888888888877777776643
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.92 E-value=0.53 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=10.0
Q ss_pred CCcEEecccccccCHHHHHHHH
Q 010910 423 NLKKLHIRRCYKIGNNGIVAVG 444 (497)
Q Consensus 423 ~L~~L~l~~~~~~~~~~~~~~~ 444 (497)
+|++|+|++|. +++++...+.
T Consensus 3 ~L~~LdL~~N~-i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNNK-LGDEGARALA 23 (28)
T ss_pred ccCEEECCCCC-CCHHHHHHHH
Confidence 44555555543 4444444443
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.66 E-value=0.14 Score=39.74 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=63.5
Q ss_pred CCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCC
Q 010910 345 ELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNL 424 (497)
Q Consensus 345 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 424 (497)
.+..++|+.|...--............|+..++++ +.+.+..- .+...+|.++.|++.+ +.+++.... ...+|.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~-kft~kf~t~t~lNl~~-neisdvPeE--~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPK-KFTIKFPTATTLNLAN-NEISDVPEE--LAAMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCH-HHhhccchhhhhhcch-hhhhhchHH--HhhhHHh
Confidence 45556666664321222222223347788888988 55554332 2333478899999987 477765444 4469999
Q ss_pred cEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 425 KKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 425 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+.|+++.++ +.... .-++ .+.+|-.|+..++
T Consensus 103 r~lNl~~N~-l~~~p-~vi~-~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 103 RSLNLRFNP-LNAEP-RVIA-PLIKLDMLDSPEN 133 (177)
T ss_pred hhcccccCc-cccch-HHHH-HHHhHHHhcCCCC
Confidence 999999987 44322 2222 2566666766655
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.71 E-value=0.16 Score=49.11 Aligned_cols=104 Identities=23% Similarity=0.152 Sum_probs=44.9
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (497)
+.+|+.|++.++. + ..+......+++|+.|+++++.--+..++.. ++.|+.|++++ +.+.+..- ...++
T Consensus 94 ~~~l~~l~l~~n~-i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~-N~i~~~~~---~~~l~ 162 (414)
T KOG0531|consen 94 LKSLEALDLYDNK-I--EKIENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSG-NLISDISG---LESLK 162 (414)
T ss_pred ccceeeeeccccc-h--hhcccchhhhhcchheeccccccccccchhh----ccchhhheecc-CcchhccC---Cccch
Confidence 4555566555533 1 1122212235666666666632211222222 24466666665 34333111 11145
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
+|+.++++++ .+.+..-.. ...+.+++.+.+.++.
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 5666666553 232211100 2345566666666554
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=85.39 E-value=0.32 Score=48.26 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=36.9
Q ss_pred ccccccCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccce
Q 010910 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTT 49 (497)
Q Consensus 4 ~~~~~~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~ 49 (497)
.|.+ ..||.|+..+||.||+ .++.+.+++||+.|+.+......|
T Consensus 105 ~dfi-~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 105 RDFL-SLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred cchh-hcccchhcccccccCC-HHHhhhhhhhcchhhhhhhccchh
Confidence 3555 5899999999999999 799999999999999995444333
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.84 E-value=1.7 Score=42.14 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=53.4
Q ss_pred HHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCC-CCChHHHHHHHh-cCCCCcEEeccCCCCCCH---
Q 010910 337 EAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQ-RIGNLALLEVGR-GCKSLQALHLVDCSSIGD--- 411 (497)
Q Consensus 337 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~--- 411 (497)
.....+.|.+..+.|+++....-+.+..+.+..|+|+.|+|++.. .+... .++.+ ....|++|-+.|++-.++
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhh
Confidence 445556788888888886555556677777778888888888721 22221 11111 246677777776533221
Q ss_pred --HHHHHHHHcCCCCcEEe
Q 010910 412 --DAICSIAEGCQNLKKLH 428 (497)
Q Consensus 412 --~~~~~~~~~~~~L~~L~ 428 (497)
..+..+.+.||+|..|+
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 22334445677776665
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.51 E-value=0.28 Score=47.47 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=16.3
Q ss_pred hCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCC
Q 010910 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (497)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (497)
.+.+|+.|++.++.+.. +......+++|++|+++++
T Consensus 93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred cccceeeeeccccchhh--cccchhhhhcchheecccc
Confidence 34555555555554322 1110123355555555554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.16 E-value=3.4 Score=40.18 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=59.8
Q ss_pred HHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCC-CC-hhHHHHHHhhCCCCcEEecCCCCCCCh--
Q 010910 310 LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHN-IG-TMGLESIGKFCRNLTELALLYCQRIGN-- 385 (497)
Q Consensus 310 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~-- 385 (497)
+.......|.+..+.++++.-..-+.+..+....|+|+.|+|+++.. +. ...+..+ ....|++|-+.+++-.+.
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence 34455567889999999887555667778888899999999998522 21 1122222 147788888887332221
Q ss_pred ---HHHHHHHhcCCCCcEEe
Q 010910 386 ---LALLEVGRGCKSLQALH 402 (497)
Q Consensus 386 ---~~~~~~~~~~~~L~~L~ 402 (497)
..+..+.+.+|+|..|+
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 23445556789998885
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=80.88 E-value=1.5 Score=20.32 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=4.8
Q ss_pred CCCEEEccCcc
Q 010910 165 HLKSLDLQGCY 175 (497)
Q Consensus 165 ~L~~L~l~~~~ 175 (497)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555554
No 88
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=69.62 E-value=3.5 Score=35.89 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=33.3
Q ss_pred cCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccce
Q 010910 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTT 49 (497)
Q Consensus 9 ~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~ 49 (497)
.+||.|++..|+.++++.+|+..+++|...-..+...-+.|
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iW 243 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIW 243 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHH
Confidence 47999999999999999999999999987776664433333
No 89
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=66.70 E-value=6.4 Score=20.64 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=12.0
Q ss_pred CcEEecccccccCHHHHHHHHhhCC
Q 010910 424 LKKLHIRRCYKIGNNGIVAVGEHCN 448 (497)
Q Consensus 424 L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (497)
|+.|++.+..--.+..++.+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 5566665543122334555554444
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=62.72 E-value=4.7 Score=20.00 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=9.4
Q ss_pred CCCEEEccCcccC
Q 010910 165 HLKSLDLQGCYVG 177 (497)
Q Consensus 165 ~L~~L~l~~~~~~ 177 (497)
+|++|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4777888887765
No 91
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=53.33 E-value=9.2 Score=28.07 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=20.6
Q ss_pred ccccCCCHHHHHHHHccCCCccchhh
Q 010910 6 RINTCLPDEVILEIFRHLDSKASRDA 31 (497)
Q Consensus 6 ~~~~~LP~evl~~If~~L~~~~d~~~ 31 (497)
..+..||.|+-.+|+++|+ -.|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~-~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLS-NKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCC-HHHHHH
Confidence 3456799999999999999 578754
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=52.34 E-value=14 Score=19.08 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=9.4
Q ss_pred CCCCEEEccCcccC
Q 010910 164 IHLKSLDLQGCYVG 177 (497)
Q Consensus 164 ~~L~~L~l~~~~~~ 177 (497)
++|++|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56777777777654
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=52.34 E-value=14 Score=19.08 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=9.4
Q ss_pred CCCCEEEccCcccC
Q 010910 164 IHLKSLDLQGCYVG 177 (497)
Q Consensus 164 ~~L~~L~l~~~~~~ 177 (497)
++|++|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56777777777654
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=49.06 E-value=48 Score=30.46 Aligned_cols=96 Identities=26% Similarity=0.269 Sum_probs=63.5
Q ss_pred hHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcC---CCCcEEeccCCCCCCH---HHHHHHHHcCCCCcEEeccccc
Q 010910 360 MGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGC---KSLQALHLVDCSSIGD---DAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 360 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
..+..+-..=|.+++.++.+...++...+..+...+ ...+.+.+.+- ..++ .++..+...++.|+.|.+.++.
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccccc
Confidence 344455555589999999887777777666655443 55666666552 3332 2344555668899999999987
Q ss_pred ccCHHHHHHHHhhCC---CCCeEeecc
Q 010910 434 KIGNNGIVAVGEHCN---SLTELSLRF 457 (497)
Q Consensus 434 ~~~~~~~~~~~~~~~---~L~~L~l~~ 457 (497)
|+..++.++...++ +|..+.+.+
T Consensus 267 -Itg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 267 -ITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred -cccHHHHHHHHHHhccchhhHhhhhh
Confidence 88888887775554 455555544
No 95
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=47.06 E-value=16 Score=28.11 Aligned_cols=8 Identities=50% Similarity=1.012 Sum_probs=3.4
Q ss_pred hcCCCCcE
Q 010910 393 RGCKSLQA 400 (497)
Q Consensus 393 ~~~~~L~~ 400 (497)
.+++.|..
T Consensus 58 ~~~~~l~~ 65 (120)
T PF03382_consen 58 AGCSSLNQ 65 (120)
T ss_pred hhhhhcCC
Confidence 33444444
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=39.36 E-value=86 Score=28.90 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=78.9
Q ss_pred CChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhC---CCCcEEecCCCCCCCh---HHHHHHHhcCCCCcEEecc
Q 010910 331 LSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFC---RNLTELALLYCQRIGN---LALLEVGRGCKSLQALHLV 404 (497)
Q Consensus 331 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~ 404 (497)
..+..+..+-.+-+.++..+|.+...++.+.+..+...+ ...+...+.+ ...++ ..+..+.+.++.|++|++.
T Consensus 185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecc
Confidence 344566677777899999999998888888777766543 5566666665 33333 2444566678999999999
Q ss_pred CCCCCCHHHHHHHHHcC---CCCcEEeccccccc-C---HHHHHHHHhhCCCCCeEe
Q 010910 405 DCSSIGDDAICSIAEGC---QNLKKLHIRRCYKI-G---NNGIVAVGEHCNSLTELS 454 (497)
Q Consensus 405 ~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~-~---~~~~~~~~~~~~~L~~L~ 454 (497)
+ +.|+..++..+...+ .+|..+.+.+-..+ + +.-+...++.+.+|=...
T Consensus 264 s-nFItg~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~g 319 (353)
T KOG3735|consen 264 S-NFITGLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFG 319 (353)
T ss_pred c-cccccHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccc
Confidence 8 588888888777654 35666655543222 1 122334445666663333
No 97
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=36.36 E-value=7.8 Score=38.13 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=7.6
Q ss_pred CCCCCEEEccCccc
Q 010910 163 CIHLKSLDLQGCYV 176 (497)
Q Consensus 163 ~~~L~~L~l~~~~~ 176 (497)
+..|.+++|+.+.+
T Consensus 120 L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 120 LEALTFLDLSSNQL 133 (722)
T ss_pred hhHHHHhhhccchh
Confidence 44555566665553
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.10 E-value=39 Score=17.75 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=8.8
Q ss_pred CCCCEEEccCccc
Q 010910 164 IHLKSLDLQGCYV 176 (497)
Q Consensus 164 ~~L~~L~l~~~~~ 176 (497)
.+|+.|++++|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4677777777665
No 99
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=33.22 E-value=1.5e+02 Score=19.78 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=28.0
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHH-----hhCCCCCeEee
Q 010910 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVG-----EHCNSLTELSL 455 (497)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l 455 (497)
.+++.+.+.+...++-..+.. -+-+.+.+..+. ++...+..+. +..|+|+++.+
T Consensus 11 ~~~~~l~i~~~~~it~~~Ll~-----~nc~~i~l~~~~-~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 11 RNLEKLSISSSNWITLDDLLN-----MNCKKIELWNSK-FTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCCEEEEccCCcccHHHHHh-----cCCCEEEEECCC-CCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 455666665444454333321 144555555543 6666666555 24566666654
No 100
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=27.86 E-value=41 Score=30.95 Aligned_cols=37 Identities=19% Similarity=0.580 Sum_probs=30.1
Q ss_pred cccCCCHHHHHHHHccCCCc-------cchhhHHhhhHHHHHhh
Q 010910 7 INTCLPDEVILEIFRHLDSK-------ASRDACSLVCRRWLTLE 43 (497)
Q Consensus 7 ~~~~LP~evl~~If~~L~~~-------~d~~~~~~vcr~W~~~~ 43 (497)
.+++||+|.|..|..+.... +..+.++.||+.|+...
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 44689999999999888632 35688999999999973
Done!