Query 010910
Match_columns 497
No_of_seqs 283 out of 3167
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 16:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1.7E-40 5.9E-45 336.0 37.0 455 4-477 3-535 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.7E-39 5.8E-44 328.6 36.4 454 9-477 14-542 (592)
3 2p1m_B Transport inhibitor res 100.0 5.8E-28 2E-32 244.3 31.9 343 128-481 95-518 (594)
4 2ast_B S-phase kinase-associat 100.0 4.6E-28 1.6E-32 226.8 23.1 269 9-354 10-282 (336)
5 3ogk_B Coronatine-insensitive 100.0 7.5E-27 2.6E-31 235.9 33.7 348 126-480 100-524 (592)
6 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-23 4.2E-28 205.7 37.4 327 134-470 52-419 (461)
7 1z7x_W Ribonuclease inhibitor; 99.9 3.8E-24 1.3E-28 209.3 32.7 348 119-477 9-405 (461)
8 2ast_B S-phase kinase-associat 99.9 2E-20 6.7E-25 174.8 21.9 206 240-450 91-298 (336)
9 4fmz_A Internalin; leucine ric 99.8 2.3E-19 7.7E-24 168.4 19.9 298 136-477 42-340 (347)
10 4fmz_A Internalin; leucine ric 99.8 8.1E-20 2.8E-24 171.4 15.8 281 135-458 63-343 (347)
11 2ca6_A RAN GTPase-activating p 99.8 5.4E-18 1.8E-22 161.3 25.0 41 159-199 27-70 (386)
12 2ca6_A RAN GTPase-activating p 99.8 7E-17 2.4E-21 153.6 27.2 97 187-285 30-140 (386)
13 1o6v_A Internalin A; bacterial 99.8 2.3E-18 7.7E-23 168.1 15.4 57 136-199 88-144 (466)
14 1o6v_A Internalin A; bacterial 99.8 6.1E-18 2.1E-22 165.0 13.9 300 135-477 65-382 (466)
15 3v47_A TOLL-like receptor 5B a 99.7 2.6E-19 8.7E-24 174.7 -2.4 308 135-459 51-406 (455)
16 3rgz_A Protein brassinosteroid 99.7 3.3E-20 1.1E-24 192.0 -10.1 79 395-478 393-474 (768)
17 3t6q_A CD180 antigen; protein- 99.7 2.1E-19 7.3E-24 181.8 -7.1 55 420-477 498-554 (606)
18 2z7x_B TOLL-like receptor 1, v 99.7 3.3E-17 1.1E-21 162.5 7.7 314 135-477 42-475 (520)
19 3rgz_A Protein brassinosteroid 99.7 5.6E-19 1.9E-23 182.9 -5.7 321 136-478 124-450 (768)
20 3v47_A TOLL-like receptor 5B a 99.7 3.7E-18 1.3E-22 166.4 -0.1 322 138-477 30-402 (455)
21 2z81_A CD282 antigen, TOLL-lik 99.7 4.1E-17 1.4E-21 163.0 5.8 160 135-302 47-206 (549)
22 4ecn_A Leucine-rich repeat pro 99.7 1E-17 3.5E-22 172.5 1.0 302 134-457 444-785 (876)
23 2z81_A CD282 antigen, TOLL-lik 99.7 1.5E-16 5E-21 159.0 9.1 104 117-227 49-159 (549)
24 3o6n_A APL1; leucine-rich repe 99.7 1.5E-17 5E-22 158.6 1.5 295 134-469 65-359 (390)
25 3vq2_A TLR4, TOLL-like recepto 99.6 7.1E-19 2.4E-23 178.0 -8.7 85 369-458 447-531 (606)
26 3goz_A Leucine-rich repeat-con 99.6 1.3E-14 4.3E-19 136.5 20.7 123 156-280 14-151 (362)
27 3o6n_A APL1; leucine-rich repe 99.6 7.6E-17 2.6E-21 153.6 5.3 302 137-478 44-347 (390)
28 4eco_A Uncharacterized protein 99.6 7.1E-18 2.4E-22 170.6 -2.7 162 134-302 202-387 (636)
29 3goz_A Leucine-rich repeat-con 99.6 4E-14 1.4E-18 133.1 22.1 263 169-463 3-298 (362)
30 3t6q_A CD180 antigen; protein- 99.6 1.5E-17 5E-22 168.3 -1.7 82 216-301 278-359 (606)
31 3oja_B Anopheles plasmodium-re 99.6 5.8E-17 2E-21 163.0 2.4 293 134-467 71-363 (597)
32 2z63_A TOLL-like receptor 4, v 99.6 2.4E-18 8.2E-23 172.9 -8.1 104 368-477 419-525 (570)
33 2z7x_B TOLL-like receptor 1, v 99.6 2.7E-16 9.1E-21 156.0 6.5 128 138-279 21-150 (520)
34 2id5_A Lingo-1, leucine rich r 99.6 2E-17 6.9E-22 162.1 -1.9 300 138-459 32-331 (477)
35 2id5_A Lingo-1, leucine rich r 99.6 7.8E-18 2.7E-22 165.1 -5.5 278 135-434 53-332 (477)
36 3oja_B Anopheles plasmodium-re 99.6 2.1E-16 7E-21 159.0 3.6 303 137-477 50-352 (597)
37 4ecn_A Leucine-rich repeat pro 99.6 6.9E-17 2.4E-21 166.4 -1.5 297 136-458 489-816 (876)
38 4eco_A Uncharacterized protein 99.6 1.6E-17 5.4E-22 168.0 -6.9 299 136-458 247-576 (636)
39 3bz5_A Internalin-J, INLJ; leu 99.6 9.1E-16 3.1E-20 148.4 5.1 276 136-463 62-353 (457)
40 3vq2_A TLR4, TOLL-like recepto 99.6 4.8E-17 1.6E-21 164.5 -4.2 281 160-466 281-563 (606)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 5.9E-16 2E-20 154.8 3.2 107 135-254 73-181 (562)
42 2z63_A TOLL-like receptor 4, v 99.6 3.8E-17 1.3E-21 164.1 -5.7 113 135-256 49-163 (570)
43 1ziw_A TOLL-like receptor 3; i 99.5 4.4E-16 1.5E-20 159.7 -2.0 39 135-175 269-307 (680)
44 1ziw_A TOLL-like receptor 3; i 99.5 7.8E-16 2.7E-20 157.8 -0.5 136 135-280 46-184 (680)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 2.1E-15 7.3E-20 150.8 2.5 128 138-279 52-181 (562)
46 3bz5_A Internalin-J, INLJ; leu 99.5 5.8E-15 2E-19 142.8 4.9 291 136-478 40-347 (457)
47 3o53_A Protein LRIM1, AGAP0063 99.5 7.3E-16 2.5E-20 142.2 -3.3 251 155-461 25-275 (317)
48 3j0a_A TOLL-like receptor 5; m 99.5 1E-16 3.5E-21 167.7 -11.8 137 136-279 46-186 (844)
49 3j0a_A TOLL-like receptor 5; m 99.4 4.5E-16 1.5E-20 162.8 -9.0 61 396-458 401-461 (844)
50 2z80_A TOLL-like receptor 2, v 99.4 4E-14 1.4E-18 132.8 4.4 135 317-459 173-312 (353)
51 1xku_A Decorin; proteoglycan, 99.4 1.2E-14 4E-19 135.1 0.7 152 242-406 121-273 (330)
52 1xku_A Decorin; proteoglycan, 99.4 5.8E-15 2E-19 137.1 -2.4 225 138-385 52-277 (330)
53 3o53_A Protein LRIM1, AGAP0063 99.4 5.4E-15 1.9E-19 136.3 -2.7 248 130-433 26-273 (317)
54 3e4g_A ATP synthase subunit S, 99.4 2E-13 6.7E-18 110.8 6.6 92 371-465 62-156 (176)
55 3g06_A SSPH2 (leucine-rich rep 99.4 5.1E-13 1.7E-17 133.2 10.7 51 138-199 61-111 (622)
56 3un9_A NLR family member X1; l 99.4 4.3E-12 1.5E-16 118.8 15.4 198 266-470 71-291 (372)
57 3un9_A NLR family member X1; l 99.4 6.2E-12 2.1E-16 117.7 16.2 193 240-438 70-285 (372)
58 3e4g_A ATP synthase subunit S, 99.4 5.1E-13 1.8E-17 108.4 6.8 104 345-451 62-170 (176)
59 2ft3_A Biglycan; proteoglycan, 99.4 6.7E-15 2.3E-19 136.8 -5.1 201 242-458 123-330 (332)
60 2ft3_A Biglycan; proteoglycan, 99.4 1E-14 3.5E-19 135.6 -4.0 272 138-433 54-331 (332)
61 3g06_A SSPH2 (leucine-rich rep 99.4 2.2E-12 7.5E-17 128.6 11.5 245 164-470 61-305 (622)
62 1wwl_A Monocyte differentiatio 99.4 4.3E-14 1.5E-18 130.0 -0.9 136 316-463 171-310 (312)
63 2z80_A TOLL-like receptor 2, v 99.4 2.7E-13 9.3E-18 127.1 4.4 256 138-434 52-313 (353)
64 1jl5_A Outer protein YOPM; leu 99.3 3.5E-13 1.2E-17 130.2 3.2 70 370-458 297-367 (454)
65 2z66_A Variable lymphocyte rec 99.3 1.2E-14 4.1E-19 133.5 -7.0 85 343-433 174-259 (306)
66 1wwl_A Monocyte differentiatio 99.3 5.8E-15 2E-19 135.8 -9.9 184 240-436 119-309 (312)
67 1jl5_A Outer protein YOPM; leu 99.3 1.6E-13 5.4E-18 132.6 -0.6 284 119-462 112-409 (454)
68 3oja_A Leucine-rich immune mol 99.3 2.1E-13 7.3E-18 133.1 -0.4 121 163-301 33-153 (487)
69 2z66_A Variable lymphocyte rec 99.3 3.2E-14 1.1E-18 130.6 -6.1 182 266-459 77-259 (306)
70 4glp_A Monocyte differentiatio 99.3 4.4E-13 1.5E-17 123.1 0.6 235 189-464 64-309 (310)
71 4fcg_A Uncharacterized protein 99.3 7.6E-14 2.6E-18 129.0 -4.6 130 317-458 182-311 (328)
72 1h6u_A Internalin H; cell adhe 99.3 2.3E-11 7.9E-16 111.3 11.8 187 216-458 41-227 (308)
73 4fcg_A Uncharacterized protein 99.3 1.4E-13 4.8E-18 127.3 -3.4 226 216-478 81-309 (328)
74 1ozn_A Reticulon 4 receptor; N 99.3 4.1E-13 1.4E-17 121.8 -0.8 133 317-459 104-236 (285)
75 3oja_A Leucine-rich immune mol 99.2 1.9E-13 6.6E-18 133.3 -3.4 239 135-403 31-269 (487)
76 3zyj_A Leucine-rich repeat-con 99.2 1.9E-13 6.4E-18 132.2 -3.7 227 216-459 64-290 (440)
77 3zyi_A Leucine-rich repeat-con 99.2 2.6E-13 8.7E-18 131.8 -3.3 227 216-459 75-301 (452)
78 3zyi_A Leucine-rich repeat-con 99.2 2.9E-13 1E-17 131.3 -2.9 243 166-433 56-301 (452)
79 1h6u_A Internalin H; cell adhe 99.2 6.8E-11 2.3E-15 108.2 12.8 189 188-433 40-228 (308)
80 1ozn_A Reticulon 4 receptor; N 99.2 5.2E-13 1.8E-17 121.1 -1.9 14 420-433 223-236 (285)
81 3zyj_A Leucine-rich repeat-con 99.2 4E-13 1.4E-17 129.9 -2.9 246 166-433 45-290 (440)
82 4g8a_A TOLL-like receptor 4; l 99.2 1.1E-13 3.7E-18 140.9 -7.5 128 119-255 53-186 (635)
83 4g8a_A TOLL-like receptor 4; l 99.2 7.6E-14 2.6E-18 142.0 -9.2 107 116-227 74-184 (635)
84 4glp_A Monocyte differentiatio 99.2 1.8E-12 6.3E-17 118.9 -0.0 136 164-302 64-207 (310)
85 1ogq_A PGIP-2, polygalacturona 99.2 3.2E-14 1.1E-18 130.8 -11.9 60 138-199 50-111 (313)
86 1ogq_A PGIP-2, polygalacturona 99.2 1.3E-13 4.5E-18 126.6 -8.6 197 265-477 99-298 (313)
87 2ra8_A Uncharacterized protein 99.1 3.6E-10 1.2E-14 104.8 11.7 125 343-471 192-329 (362)
88 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 9.7E-11 3.3E-15 75.1 4.4 43 9-52 10-52 (53)
89 1io0_A Tropomodulin; LRR prote 99.0 1.2E-08 4.2E-13 85.3 16.0 127 335-465 27-167 (185)
90 2ra8_A Uncharacterized protein 99.0 1.9E-09 6.6E-14 99.9 12.1 137 317-459 192-341 (362)
91 3rfs_A Internalin B, repeat mo 99.0 2.7E-11 9.2E-16 108.8 -0.7 125 317-458 108-232 (272)
92 4ezg_A Putative uncharacterize 99.0 4.1E-10 1.4E-14 95.7 6.1 127 317-458 65-191 (197)
93 1h6t_A Internalin B; cell adhe 99.0 1.2E-09 4E-14 99.0 8.6 79 343-433 133-211 (291)
94 2z62_A TOLL-like receptor 4, v 99.0 8.4E-12 2.9E-16 112.5 -6.2 203 216-458 28-234 (276)
95 4ezg_A Putative uncharacterize 98.9 8.9E-10 3.1E-14 93.6 6.4 82 343-433 111-192 (197)
96 1h6t_A Internalin B; cell adhe 98.9 1.6E-09 5.6E-14 98.0 8.5 166 137-354 45-210 (291)
97 1m9s_A Internalin B; cell inva 98.9 1.3E-09 4.3E-14 108.7 6.8 168 240-433 41-208 (605)
98 3rfs_A Internalin B, repeat mo 98.9 1.8E-10 6.1E-15 103.4 -0.1 103 316-433 131-233 (272)
99 2z62_A TOLL-like receptor 4, v 98.9 5.1E-11 1.7E-15 107.4 -4.0 204 189-433 28-235 (276)
100 2je0_A Acidic leucine-rich nuc 98.9 1.3E-09 4.4E-14 88.0 4.2 130 318-456 17-148 (149)
101 1m9s_A Internalin B; cell inva 98.8 3.6E-09 1.2E-13 105.4 7.8 166 137-328 42-207 (605)
102 2xwt_C Thyrotropin receptor; s 98.8 4.1E-11 1.4E-15 105.4 -6.5 129 317-459 104-237 (239)
103 2o6q_A Variable lymphocyte rec 98.8 1.7E-10 5.8E-15 103.5 -2.8 79 216-301 16-94 (270)
104 1p9a_G Platelet glycoprotein I 98.8 3.6E-10 1.2E-14 102.2 -0.9 197 216-433 10-206 (290)
105 1io0_A Tropomodulin; LRR prote 98.8 3.3E-07 1.1E-11 76.5 16.9 127 309-439 27-167 (185)
106 2o6q_A Variable lymphocyte rec 98.8 3.3E-10 1.1E-14 101.6 -2.7 62 216-280 37-98 (270)
107 2je0_A Acidic leucine-rich nuc 98.7 4.9E-09 1.7E-13 84.5 3.4 39 138-177 17-55 (149)
108 1p9a_G Platelet glycoprotein I 98.7 1E-09 3.5E-14 99.3 -0.8 203 187-411 8-210 (290)
109 2ell_A Acidic leucine-rich nuc 98.7 1.1E-09 3.9E-14 90.3 -0.5 133 318-459 24-158 (168)
110 2xwt_C Thyrotropin receptor; s 98.7 1.9E-10 6.4E-15 101.2 -6.6 35 139-175 32-66 (239)
111 1xeu_A Internalin C; cellular 98.6 3.9E-08 1.3E-12 87.4 6.4 125 137-281 40-164 (263)
112 2ell_A Acidic leucine-rich nuc 98.6 6.5E-09 2.2E-13 85.7 0.4 39 138-177 24-62 (168)
113 1xeu_A Internalin C; cellular 98.5 7.2E-08 2.5E-12 85.7 5.4 13 421-433 171-183 (263)
114 3m19_A Variable lymphocyte rec 98.5 1.2E-08 4.1E-13 90.3 -1.5 158 292-462 35-192 (251)
115 1dce_A Protein (RAB geranylger 98.4 4.1E-09 1.4E-13 104.3 -5.5 102 345-458 442-543 (567)
116 3sb4_A Hypothetical leucine ri 98.4 1.9E-08 6.4E-13 92.9 -1.3 39 137-177 24-62 (329)
117 3m19_A Variable lymphocyte rec 98.4 3.2E-08 1.1E-12 87.5 -0.2 61 369-433 130-190 (251)
118 1pgv_A TMD-1, tropomodulin TMD 98.4 7.3E-06 2.5E-10 67.8 13.7 123 334-458 31-167 (197)
119 3cvr_A Invasion plasmid antige 98.4 1.1E-07 3.6E-12 93.8 3.1 186 216-439 59-246 (571)
120 1a9n_A U2A', U2A'; complex (nu 98.4 1.6E-07 5.3E-12 78.0 3.1 131 317-458 18-150 (176)
121 3cvr_A Invasion plasmid antige 98.3 3.7E-07 1.3E-11 90.0 5.3 190 189-417 59-250 (571)
122 4ay9_X Follicle-stimulating ho 98.3 2E-09 6.9E-14 100.4 -10.9 226 216-458 30-256 (350)
123 2o6s_A Variable lymphocyte rec 98.3 4.7E-08 1.6E-12 83.7 -2.6 102 342-458 74-175 (208)
124 1a9n_A U2A', U2A'; complex (nu 98.2 6.8E-07 2.3E-11 74.0 3.4 38 137-177 18-55 (176)
125 1pgv_A TMD-1, tropomodulin TMD 98.2 2.5E-05 8.7E-10 64.5 12.6 123 309-433 32-168 (197)
126 1dce_A Protein (RAB geranylger 98.2 4.3E-08 1.5E-12 97.0 -4.8 125 318-455 441-567 (567)
127 3l2o_B F-box only protein 4; s 98.2 4E-07 1.4E-11 78.9 1.4 44 9-53 6-49 (312)
128 2o6s_A Variable lymphocyte rec 98.2 2.8E-07 9.7E-12 78.8 0.4 59 138-199 28-86 (208)
129 1ds9_A Outer arm dynein; leuci 98.2 4.5E-07 1.5E-11 76.8 1.6 110 159-279 43-152 (198)
130 2xot_A Amphoterin-induced prot 98.2 2.2E-07 7.4E-12 86.9 -0.5 62 216-279 39-100 (361)
131 3e6j_A Variable lymphocyte rec 98.2 1.9E-07 6.4E-12 81.2 -0.9 59 395-458 111-169 (229)
132 2xot_A Amphoterin-induced prot 98.1 1.5E-07 5.2E-12 88.0 -1.7 158 292-459 39-200 (361)
133 2v9t_B SLIT homolog 2 protein 98.1 1.7E-07 6E-12 80.8 -1.4 11 292-302 32-42 (220)
134 1ds9_A Outer arm dynein; leuci 98.1 6.2E-07 2.1E-11 75.9 1.5 128 134-273 44-180 (198)
135 2v70_A SLIT-2, SLIT homolog 2 98.1 1.9E-07 6.6E-12 80.5 -1.7 84 369-458 80-163 (220)
136 2e31_A FBS1, F-box only protei 98.1 1.3E-06 4.4E-11 76.9 3.1 44 6-51 50-94 (297)
137 4ay9_X Follicle-stimulating ho 98.1 1.6E-08 5.4E-13 94.3 -10.1 223 189-432 30-256 (350)
138 3sb4_A Hypothetical leucine ri 98.0 1.2E-07 4E-12 87.6 -4.6 105 344-458 202-307 (329)
139 3e6j_A Variable lymphocyte rec 98.0 1.3E-06 4.5E-11 75.8 2.2 59 138-199 40-98 (229)
140 2v70_A SLIT-2, SLIT homolog 2 98.0 4.7E-07 1.6E-11 78.0 -1.5 126 344-477 32-160 (220)
141 2v9t_B SLIT homolog 2 protein 97.9 8.5E-07 2.9E-11 76.4 -1.3 142 318-469 32-173 (220)
142 3v7d_B Cell division control p 97.7 7.7E-06 2.6E-10 79.3 1.7 47 4-52 12-59 (464)
143 1p22_A F-BOX/WD-repeat protein 97.6 1.3E-05 4.3E-10 77.1 1.2 48 3-52 7-58 (435)
144 2wfh_A SLIT homolog 2 protein 97.6 1.4E-05 4.8E-10 67.0 1.1 33 318-353 31-63 (193)
145 4b8c_D Glucose-repressible alc 97.6 2.2E-06 7.4E-11 87.7 -4.8 11 448-458 359-369 (727)
146 1w8a_A SLIT protein; signaling 97.5 6.1E-06 2.1E-10 69.3 -1.8 108 319-433 30-137 (192)
147 4b8c_D Glucose-repressible alc 97.5 9.2E-06 3.1E-10 83.1 -2.1 109 316-437 222-330 (727)
148 2ovr_B FBW7, F-BOX/WD repeat p 97.4 5.6E-05 1.9E-09 72.8 3.0 46 4-51 16-61 (445)
149 2wfh_A SLIT homolog 2 protein 97.3 3.9E-05 1.3E-09 64.3 0.8 108 343-459 30-137 (193)
150 2o6r_A Variable lymphocyte rec 97.3 8.1E-05 2.8E-09 61.4 2.7 39 240-279 98-136 (177)
151 1w8a_A SLIT protein; signaling 97.3 2.2E-05 7.5E-10 65.8 -1.2 40 240-280 100-139 (192)
152 2o6r_A Variable lymphocyte rec 97.3 2.6E-05 9E-10 64.4 -1.0 60 395-458 75-134 (177)
153 3rw6_A Nuclear RNA export fact 97.0 0.0016 5.5E-08 57.0 7.6 37 342-379 168-205 (267)
154 3rw6_A Nuclear RNA export fact 96.9 0.0019 6.4E-08 56.5 7.1 17 240-256 194-210 (267)
155 2r9u_A Variable lymphocyte rec 96.6 0.00044 1.5E-08 56.7 0.6 58 344-405 33-90 (174)
156 3g39_A Variable lymphocyte rec 96.5 0.00036 1.2E-08 57.0 -0.7 84 344-433 30-113 (170)
157 3g39_A Variable lymphocyte rec 96.1 0.0031 1.1E-07 51.3 2.9 40 240-280 76-115 (170)
158 2r9u_A Variable lymphocyte rec 96.0 0.0034 1.2E-07 51.3 2.9 40 240-280 79-118 (174)
159 4fs7_A Uncharacterized protein 96.0 0.00011 3.9E-09 69.3 -6.9 58 135-197 68-125 (394)
160 4fdw_A Leucine rich hypothetic 95.9 0.0017 5.8E-08 61.1 1.0 15 240-254 178-192 (401)
161 4fdw_A Leucine rich hypothetic 95.7 0.00024 8E-09 67.0 -6.0 190 243-458 158-355 (401)
162 4fs7_A Uncharacterized protein 94.8 0.00018 6.1E-09 67.9 -10.1 80 368-457 295-375 (394)
163 2ifg_A High affinity nerve gro 94.2 0.012 4.1E-07 54.2 1.0 87 341-433 28-114 (347)
164 2ifg_A High affinity nerve gro 93.2 0.022 7.5E-07 52.4 0.9 35 343-379 55-89 (347)
165 4gt6_A Cell surface protein; l 81.6 0.83 2.8E-05 42.6 3.2 33 139-174 65-97 (394)
166 4gt6_A Cell surface protein; l 77.3 0.52 1.8E-05 44.0 0.3 61 135-198 84-146 (394)
167 3rfe_A Platelet glycoprotein I 48.0 9.7 0.00033 28.7 2.3 12 163-174 54-65 (130)
168 4h09_A Hypothetical leucine ri 46.5 3.6 0.00012 37.9 -0.5 125 317-457 216-342 (379)
169 3rfe_A Platelet glycoprotein I 45.9 12 0.00041 28.1 2.5 12 395-406 54-65 (130)
170 4h09_A Hypothetical leucine ri 45.0 2.5 8.5E-05 39.0 -1.8 125 342-478 215-341 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.7e-40 Score=336.04 Aligned_cols=455 Identities=23% Similarity=0.355 Sum_probs=327.3
Q ss_pred ccccccCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeecccCCCchHHHHHHHHhccCCeEeeecccccc
Q 010910 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLSV 83 (497)
Q Consensus 4 ~~~~~~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (497)
+|.+ +.||+|||.+||+||+..+|+.+++.|||+|+++....+..+.+..+... .......++++++.+.+..+...
T Consensus 3 ~d~~-~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~ 79 (594)
T 2p1m_B 3 KRIA-LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHF 79 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGG
T ss_pred ccch-hhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--CHHHHHhhCCCceEEeccCCCch
Confidence 3555 48999999999999996689999999999999996555555555544432 23456778999999999886544
Q ss_pred cccccccCccCcccccchhhhhhc----ccccCCCCccccCCccccchhhHHHHHhhCCCCcEEeeccCCCcChHHHHHH
Q 010910 84 SIPVQHGRRRGDQSKLSALQLHYL----TKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSL 159 (497)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 159 (497)
...... ...|+....+| .... ..-...++....+++..+..+.+.+++|++|++.+|..++...+..+
T Consensus 80 ~~~~l~-------~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 151 (594)
T 2p1m_B 80 ADFNLV-------PDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151 (594)
T ss_dssp GGGTCS-------CTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH
T ss_pred hhcccc-------cccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH
Confidence 311100 00011111111 0000 00011244445577788888887799999999999866777778888
Q ss_pred HHhCCCCCEEEccCcccCcHh---HHHHHhhCCCCceEeccCCC-CCCHHHHHHHHhhcccCccEEecCCCCCCCh----
Q 010910 160 AQKCIHLKSLDLQGCYVGDQG---LAAVGKVCNQLEDLNLRFCE-GLTDTGLVDLAHGCGKSLKSLGIAACVKITD---- 231 (497)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~---- 231 (497)
...+++|++|++++|.+.+.. +..+...+++|++|+++++. .+....+..+...+ ++|++|++++|.....
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~l~~~ 230 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-PNLKSLKLNRAVPLEKLATL 230 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC-TTCCEEECCTTSCHHHHHHH
T ss_pred HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC-CCCcEEecCCCCcHHHHHHH
Confidence 888999999999998865433 33444466788888888775 45666666666665 7888888877622111
Q ss_pred ------------------------------------------------HHHHHHHhcCCCCcEEEccCCCCChhHHHHHH
Q 010910 232 ------------------------------------------------VSLEAVGSHCKSLETLSLDSEFIHNKGVHAVA 263 (497)
Q Consensus 232 ------------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 263 (497)
..+..+...+++|++|+++++.+.+..+..+.
T Consensus 231 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~ 310 (594)
T 2p1m_B 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310 (594)
T ss_dssp HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH
T ss_pred HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH
Confidence 11111222456777888887777777777777
Q ss_pred hcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeec--------ccccCCCHHHHHHHhccCcccCeeeccCCCCCChHH
Q 010910 264 QGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLAL--------YSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMG 335 (497)
Q Consensus 264 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 335 (497)
..+++|++|++.++ +.+..+..+...+++|++|++ .++..+++.++..+...+++|+.|.+.. ..+++..
T Consensus 311 ~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~ 388 (594)
T 2p1m_B 311 CQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAA 388 (594)
T ss_dssp TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHH
T ss_pred hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHH
Confidence 78888888888766 666677777777888998888 3455677777777777788899886544 4588888
Q ss_pred HHHHhhcCCCCCEEeec-----CCCCCC----hhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCC
Q 010910 336 LEAIATGCKELTHLEIN-----GCHNIG----TMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDC 406 (497)
Q Consensus 336 ~~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (497)
+..+...+++|++|++. +|..++ +.++..+...+++|++|++++ .+++.++..+...+++|+.|++++|
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC
Confidence 88887778999999998 566777 677788888889999999966 7888888888777899999999886
Q ss_pred CCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccchhHHhh-hhhccccc
Q 010910 407 SSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGKFFSPQL-HSYSHFHL 477 (497)
Q Consensus 407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~~~~ 477 (497)
.+++.++..+...+++|+.|++++|+ +++.++..+...+++|++|++++| .+++.|++.+ ..++++++
T Consensus 467 -~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 467 -GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp -CSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEE
T ss_pred -CCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEE
Confidence 58888888887789999999999997 688888888888999999999999 5688888887 45666655
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.7e-39 Score=328.56 Aligned_cols=454 Identities=22% Similarity=0.351 Sum_probs=325.7
Q ss_pred cCCCHHHHHHHHccC-CCccchhhHHhhhHHHHHhhhcccceeecccCCCchHHHHHHHHhccCCeEeeeccccccccc-
Q 010910 9 TCLPDEVILEIFRHL-DSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLSVSIP- 86 (497)
Q Consensus 9 ~~LP~evl~~If~~L-~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 86 (497)
..||+|+|.+||+|| + .+|+.+++.|||+|+.+....+..+.+..+.. .....+..++++++.+.+.++......
T Consensus 14 ~~LPdeil~~I~~~L~~-~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 90 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITD-PKDRDSASLVCRRWFKIDSETREHVTMALCYT--ATPDRLSRRFPNLRSLKLKGKPRAAMFN 90 (592)
T ss_dssp CCCGGGTHHHHHTTCCC-HHHHHHHTTSCHHHHHHHHHHCCEEEESCGGG--SCHHHHHHHCTTCSEEEEECSCGGGGGT
T ss_pred CCCCHHHHHHHHHhcCC-HHHHHHHHHHhHHHHHhhhccccEEEEeeccc--cChHHHHHhCCCCeEEEecCCcchhhcc
Confidence 369999999999999 7 89999999999999999655555555443322 335667788999999999776543211
Q ss_pred -ccccCccCcccccchhhhhhcccccCCCCccccCCccccchhhHHHHHhhCCC-CcEEeeccCCCcChHHHHHHHHhCC
Q 010910 87 -VQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGFSK-LEKLSLIWCSNISSLGLMSLAQKCI 164 (497)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~ 164 (497)
.+.... . .....+.......+ .-...++....+++..+..+...++. |++|++++|..+....+..+...++
T Consensus 91 ~~~~~~~--~---~~~~~l~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 164 (592)
T 3ogk_B 91 LIPENWG--G---YVTPWVTEISNNLR-QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR 164 (592)
T ss_dssp CSCTTSC--C---BCHHHHHHHHHHCT-TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCT
T ss_pred ccccccc--c---cchHHHHHHHhhCC-CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCC
Confidence 110000 0 00000000000000 00011333445666667777666666 8888888876566667777777888
Q ss_pred CCCEEEccCcccCcHh---HHHHHhhCCCCceEeccCCCC--CCHHHHHHHHhhcccCccEEecCCCCCCC---------
Q 010910 165 HLKSLDLQGCYVGDQG---LAAVGKVCNQLEDLNLRFCEG--LTDTGLVDLAHGCGKSLKSLGIAACVKIT--------- 230 (497)
Q Consensus 165 ~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~~L~~L~l~~~~~~~--------- 230 (497)
+|++|++++|.+.+.+ +..+...+++|++|+++++.. +....+..+...+ ++|++|+++++....
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC-CCCcEEeccCccHHHHHHHHhhhh
Confidence 8888888888764433 555666778888888876642 2455666666665 778888777653111
Q ss_pred --------------------------------------hHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEE
Q 010910 231 --------------------------------------DVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVL 272 (497)
Q Consensus 231 --------------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 272 (497)
...+..+...+++|++|+++++.+.+.....+...+++|++|
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 111223334567888888888777777777777888899999
Q ss_pred EeecCCCChHHHHHHHhcCCCCceeeccc----------ccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhc
Q 010910 273 KLQCINVTDEALVAVGNQCLSLELLALYS----------FQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATG 342 (497)
Q Consensus 273 ~l~~~~~~~~~l~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 342 (497)
++. +.+.+..+..+...+++|++|++.+ |+.+++.++..+...+++|+.|.+. +..+++..+..+...
T Consensus 324 ~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 324 ETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTY 401 (592)
T ss_dssp EEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHH
T ss_pred ecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhh
Confidence 887 6667777777777889999999984 7778888888777778999999984 445888888888877
Q ss_pred CCCCCEEeec---CCCCCCh----hHHHHHHhhCCCCcEEecCCCC-CCChHHHHHHHhcCCCCcEEeccCCCCCCHHHH
Q 010910 343 CKELTHLEIN---GCHNIGT----MGLESIGKFCRNLTELALLYCQ-RIGNLALLEVGRGCKSLQALHLVDCSSIGDDAI 414 (497)
Q Consensus 343 ~~~L~~L~l~---~~~~~~~----~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 414 (497)
+++|++|++. .++.+++ .++..+...+++|++|++++|. .+++..+..+...+++|+.|++++| .+++.++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~ 480 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGL 480 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHH
Confidence 8999999997 3456665 4677777788999999998754 4788888888888999999999986 6888888
Q ss_pred HHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccchhHHhhh-hhccccc
Q 010910 415 CSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGKFFSPQLH-SYSHFHL 477 (497)
Q Consensus 415 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~~~~ 477 (497)
..+...+++|+.|++++|. +++.++..+...+++|++|++++| ++++.|++.+. .++.+++
T Consensus 481 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGGCCTTEEE
T ss_pred HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHHhCCCcEE
Confidence 8888889999999999997 888888888889999999999999 59998887765 3444444
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=5.8e-28 Score=244.25 Aligned_cols=343 Identities=24% Similarity=0.392 Sum_probs=259.3
Q ss_pred hhHHHHHhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCc-ccCcHhHHHHHhhCCCCceEeccCCCCCCH--
Q 010910 128 SGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGC-YVGDQGLAAVGKVCNQLEDLNLRFCEGLTD-- 204 (497)
Q Consensus 128 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-- 204 (497)
..+..+...+++|++|+++++. ++...+..+...+++|++|++++| .+++.++..+...+++|++|++++|. +++
T Consensus 95 ~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~ 172 (594)
T 2p1m_B 95 PWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS 172 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC
T ss_pred HHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc
Confidence 3466777889999999999874 888888888778999999999999 57777788888889999999999885 322
Q ss_pred -HHHHHHHhhcccCccEEecCCCC-CCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHH-------------------
Q 010910 205 -TGLVDLAHGCGKSLKSLGIAACV-KITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVA------------------- 263 (497)
Q Consensus 205 -~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------- 263 (497)
..+..+...+ ++|++|+++++. .+....+..+...+++|++|+++++.. ..++....
T Consensus 173 ~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 173 GHWLSHFPDTY-TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp GGGGGGSCTTC-CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred hHHHHHHhhcC-CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc-HHHHHHHHhcCCcceEcccccccCccc
Confidence 2233333334 799999999875 566677777777899999999987621 11122222
Q ss_pred -----------------------------------hcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHH
Q 010910 264 -----------------------------------QGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDK 308 (497)
Q Consensus 264 -----------------------------------~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 308 (497)
..+++|++|+++++.+.+..+..+...+++|++|++.++ +.+.
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~ 328 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDA 328 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHH
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHH
Confidence 234667777776666777667666667788888888775 5566
Q ss_pred HHHHHhccCcccCeeec--------cCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecC--
Q 010910 309 GLHAVGKGCKKLKNLTL--------SDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALL-- 378 (497)
Q Consensus 309 ~~~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~-- 378 (497)
++..+...+++|++|++ ..+..+++.++..+...+++|+.|.+. |+.+++.++..+...+++|++|+++
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 66666666788888888 334567777777777778888888554 4667888888887778999999998
Q ss_pred ---CCCCCC----hHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCC
Q 010910 379 ---YCQRIG----NLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLT 451 (497)
Q Consensus 379 ---~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 451 (497)
+|+.++ +.++..+...+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++..+..+|++|+
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcC
Confidence 567777 667777777889999999965 78888888887778999999999986 88888888888899999
Q ss_pred eEeecccccccchhHH----hhhhhccccc-cCcc
Q 010910 452 ELSLRFCDRYGKFFSP----QLHSYSHFHL-GCLL 481 (497)
Q Consensus 452 ~L~l~~~~~l~~~~~~----~l~~l~~~~~-~~~~ 481 (497)
+|++++| .+++.++. .+.++..+.+ +|+.
T Consensus 485 ~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 485 KLEIRDC-PFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred EEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999999 46776665 3556777766 4664
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=4.6e-28 Score=226.76 Aligned_cols=269 Identities=21% Similarity=0.281 Sum_probs=131.9
Q ss_pred cCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeecccCCCchHHHHHHHHhccCCeEeeeccccccccccc
Q 010910 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLSVSIPVQ 88 (497)
Q Consensus 9 ~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 88 (497)
++||+|++.+||+||+ .+|+++++.|||+|+++...+..|.++.+...
T Consensus 10 ~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~------------------------------- 57 (336)
T 2ast_B 10 DSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGK------------------------------- 57 (336)
T ss_dssp SSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-------------------------------
T ss_pred hhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccc-------------------------------
Confidence 4899999999999999 79999999999999999655555554443321
Q ss_pred ccCccCcccccchhhhhhcccccCCCCccccCCccccchhhHHHHHhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCE
Q 010910 89 HGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKS 168 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 168 (497)
.+.+..+..+.. ++++.|++.+.. +...... ...+++|++
T Consensus 58 -----------------------------------~~~~~~~~~~~~--~~l~~L~l~~n~-l~~~~~~--~~~~~~L~~ 97 (336)
T 2ast_B 58 -----------------------------------NLHPDVTGRLLS--QGVIAFRCPRSF-MDQPLAE--HFSPFRVQH 97 (336)
T ss_dssp -----------------------------------BCCHHHHHHHHH--TTCSEEECTTCE-ECSCCCS--CCCCBCCCE
T ss_pred -----------------------------------cCCHHHHHhhhh--ccceEEEcCCcc-ccccchh--hccCCCCCE
Confidence 011111111111 455555555421 2111000 113556666
Q ss_pred EEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEE
Q 010910 169 LDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLS 248 (497)
Q Consensus 169 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 248 (497)
|++++|.+.+..+......+++|++|+++++. +.+.....+.. + ++|++|++++|..+++..+..+...+++|++|+
T Consensus 98 L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~-~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 98 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-N-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp EECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTT-C-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred EEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhc-C-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 66666655544444444455666666666552 33333222221 2 455555555543344444444444455555555
Q ss_pred ccCC-CCChhHHHHHHhcCC-CCcEEEeecC--CCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeee
Q 010910 249 LDSE-FIHNKGVHAVAQGCP-LLRVLKLQCI--NVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 324 (497)
Q Consensus 249 l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 324 (497)
++++ .+.+.++...+..++ +|++|+++++ .+++..+......+++|++|+++++..+++..+..+. .+++|+.|+
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~ 253 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLS 253 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEE
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEee
Confidence 5555 444444444444445 5555555444 3333333333333444444444443323322222221 234444444
Q ss_pred ccCCCCCChHHHHHHhhcCCCCCEEeecCC
Q 010910 325 LSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (497)
Q Consensus 325 l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 354 (497)
+++|..+++.++..+.. +++|+.|++++|
T Consensus 254 l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~ 282 (336)
T 2ast_B 254 LSRCYDIIPETLLELGE-IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred CCCCCCCCHHHHHHHhc-CCCCCEEeccCc
Confidence 44443333333322222 444444444443
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=7.5e-27 Score=235.95 Aligned_cols=348 Identities=23% Similarity=0.344 Sum_probs=265.9
Q ss_pred chhhHHHHHhhCCCCcEEeeccCCCcChHHHHHHHHhCCC-CCEEEccCcc-cCcHhHHHHHhhCCCCceEeccCCCC--
Q 010910 126 SDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIH-LKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEG-- 201 (497)
Q Consensus 126 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-- 201 (497)
....+..+...+++|++|+++++ .++......+...+++ |++|++++|. +.+..+..+...+++|++|++++|..
T Consensus 100 ~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 178 (592)
T 3ogk_B 100 VTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEEC
T ss_pred chHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccC
Confidence 34456777778999999999987 5777777777666676 9999999987 66677778888899999999998841
Q ss_pred CCHHHHHHHHhhcccCccEEecCCCCC--CChHHHHHHHhcCCCCcEEEccCCCCCh-----------------------
Q 010910 202 LTDTGLVDLAHGCGKSLKSLGIAACVK--ITDVSLEAVGSHCKSLETLSLDSEFIHN----------------------- 256 (497)
Q Consensus 202 ~~~~~~~~l~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------------- 256 (497)
.....+..+...+ ++|++|+++++.. .....+..+...+++|++|+++++.+..
T Consensus 179 ~~~~~l~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 179 KDGKWLHELAQHN-TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp CCSHHHHHHHHHC-CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCT
T ss_pred cchhHHHHHHhcC-CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccccc
Confidence 1222355555555 8999999988643 3456777777889999999998865432
Q ss_pred -------------------------hHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHH
Q 010910 257 -------------------------KGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLH 311 (497)
Q Consensus 257 -------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~ 311 (497)
..+..+...+++|++|+++++.+.+..+..+...+++|+.|++.+ .+.+.++.
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~ 335 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLE 335 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHH
T ss_pred chHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC--ccCHHHHH
Confidence 112223345667888888777777777766667788888888873 45666777
Q ss_pred HHhccCcccCeeeccC----------CCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecC---
Q 010910 312 AVGKGCKKLKNLTLSD----------CYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALL--- 378 (497)
Q Consensus 312 ~l~~~~~~L~~L~l~~----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~--- 378 (497)
.+...+++|++|++++ |..+++.++..+...+++|++|+++ ++.+++.++..+...+++|++|+++
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 7777788899999885 6678888888877778999999984 4678888888888878999999997
Q ss_pred CCCCCCh----HHHHHHHhcCCCCcEEeccCCC-CCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeE
Q 010910 379 YCQRIGN----LALLEVGRGCKSLQALHLVDCS-SIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTEL 453 (497)
Q Consensus 379 ~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 453 (497)
.|+.+++ .++..+...+++|++|++++|. .+++..+..+...+++|+.|++++|. +++.++..+..+|++|++|
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEE
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCee
Confidence 3567765 4677777779999999998765 47888888888889999999999986 8988888888899999999
Q ss_pred eecccccccchhHHh----hhhhccccc-cCc
Q 010910 454 SLRFCDRYGKFFSPQ----LHSYSHFHL-GCL 480 (497)
Q Consensus 454 ~l~~~~~l~~~~~~~----l~~l~~~~~-~~~ 480 (497)
++++|. +++.++.. +.++..+.+ +|.
T Consensus 494 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 494 EMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 999995 88766654 445666666 354
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.2e-23 Score=205.67 Aligned_cols=327 Identities=22% Similarity=0.281 Sum_probs=191.2
Q ss_pred HhhCCCCcEEeeccCCCcChHHHHHHHHhCC----CCCEEEccCcccCcHhHHHH---HhhCCCCceEeccCCCCCCHHH
Q 010910 134 ADGFSKLEKLSLIWCSNISSLGLMSLAQKCI----HLKSLDLQGCYVGDQGLAAV---GKVCNQLEDLNLRFCEGLTDTG 206 (497)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~ 206 (497)
...+++|++|+++++ .+.......+...++ +|++|++++|.+.+.+...+ ...+++|++|+++++. +.+.+
T Consensus 52 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 129 (461)
T 1z7x_W 52 LRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG 129 (461)
T ss_dssp HHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH
T ss_pred HHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH
Confidence 344677777777764 355555556666565 57777777777665443222 2345677777777664 55444
Q ss_pred HHHHHhhc---ccCccEEecCCCCCCChH---HHHHHHhcCCCCcEEEccCCCCChhHHHHHHh----cCCCCcEEEeec
Q 010910 207 LVDLAHGC---GKSLKSLGIAACVKITDV---SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQ----GCPLLRVLKLQC 276 (497)
Q Consensus 207 ~~~l~~~~---~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~ 276 (497)
...+.... .++|++|+++++. +... .+......+++|++|+++++.+.+.+...+.. ..++|++|++++
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 44443322 2357777777753 3332 22333345677777777777766655554443 245777777777
Q ss_pred CCCChHHH---HHHHhcCCCCceeecccccCCCHHHHHHHh----ccCcccCeeeccCCCCCChHHHHHH---hhcCCCC
Q 010910 277 INVTDEAL---VAVGNQCLSLELLALYSFQQFTDKGLHAVG----KGCKKLKNLTLSDCYFLSDMGLEAI---ATGCKEL 346 (497)
Q Consensus 277 ~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L 346 (497)
+.+.+... ......+++|++|+++++ .+++.++..+. ..+++|+.|++++|. +++.+...+ ...+++|
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCc
Confidence 76666442 222335677777777665 35444443332 235677777777763 666543222 2346777
Q ss_pred CEEeecCCCCCChhHHHHHHhh----CCCCcEEecCCCCCCChHHHH---HHHhcCCCCcEEeccCCCCCCHHHHHHHHH
Q 010910 347 THLEINGCHNIGTMGLESIGKF----CRNLTELALLYCQRIGNLALL---EVGRGCKSLQALHLVDCSSIGDDAICSIAE 419 (497)
Q Consensus 347 ~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 419 (497)
++|+++++ .+++.+...+... .++|++|++++| .+++.+.. .....+++|+.|+++++ .+++.++..+..
T Consensus 287 ~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 363 (461)
T 1z7x_W 287 KELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQ 363 (461)
T ss_dssp CEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHH
T ss_pred ceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHH
Confidence 77777764 4555554444432 257777777773 45554332 22334677777777765 566655555543
Q ss_pred c----CCCCcEEecccccccCHHHHHHHH---hhCCCCCeEeecccccccchhHHhhh
Q 010910 420 G----CQNLKKLHIRRCYKIGNNGIVAVG---EHCNSLTELSLRFCDRYGKFFSPQLH 470 (497)
Q Consensus 420 ~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~ 470 (497)
. .++|+.|++++|. +++.++..+. ..+++|++|++++| .+++.++..+.
T Consensus 364 ~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~ 419 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLV 419 (461)
T ss_dssp HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHH
T ss_pred HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHH
Confidence 2 4577777777774 6665443333 45677777777777 67776666555
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=3.8e-24 Score=209.32 Aligned_cols=348 Identities=21% Similarity=0.262 Sum_probs=260.0
Q ss_pred cCCccccchhhHHHHHhhCCCCcEEeeccCCCcChHH---HHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCC----CC
Q 010910 119 QSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLG---LMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCN----QL 191 (497)
Q Consensus 119 ~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L 191 (497)
++....+++..+..+...+++|+.|++++|. ++... +...+..+++|++|+++++.+.+..+..+...++ +|
T Consensus 9 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 87 (461)
T 1z7x_W 9 DIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 87 (461)
T ss_dssp EEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred hhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCce
Confidence 4445557777778877889999999999975 77653 4455667899999999999998888888877666 79
Q ss_pred ceEeccCCCCCCHHH---HHHHHhhcccCccEEecCCCCCCChHHHHHHHhc----CCCCcEEEccCCCCChhHHH---H
Q 010910 192 EDLNLRFCEGLTDTG---LVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSH----CKSLETLSLDSEFIHNKGVH---A 261 (497)
Q Consensus 192 ~~L~l~~~~~~~~~~---~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~---~ 261 (497)
++|+++++. +.+.+ +...+..+ ++|++|+++++. +.......+... .++|++|++++|.+.+.+.. .
T Consensus 88 ~~L~L~~n~-i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 88 QKLSLQNCC-LTGAGCGVLSSTLRTL-PTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CEEECTTSC-CBGGGHHHHHHHTTSC-TTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred eEEEccCCC-CCHHHHHHHHHHHccC-CceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 999999985 55533 33344444 799999999975 665555555433 45799999999998876643 3
Q ss_pred HHhcCCCCcEEEeecCCCChHHHHHHHh----cCCCCceeecccccCCCHHH---HHHHhccCcccCeeeccCCCCCChH
Q 010910 262 VAQGCPLLRVLKLQCINVTDEALVAVGN----QCLSLELLALYSFQQFTDKG---LHAVGKGCKKLKNLTLSDCYFLSDM 334 (497)
Q Consensus 262 ~~~~~~~L~~L~l~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~ 334 (497)
.+..+++|++|+++++.+.+..+..+.. ..++|++|+++++. ++..+ +......+++|+.|+++++. +++.
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~ 242 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDV 242 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChH
Confidence 4456899999999999988876665543 35699999999874 55443 34444468999999999985 7776
Q ss_pred HHHHHhh----cCCCCCEEeecCCCCCChhHHHHH---HhhCCCCcEEecCCCCCCChHHHHHHHhc----CCCCcEEec
Q 010910 335 GLEAIAT----GCKELTHLEINGCHNIGTMGLESI---GKFCRNLTELALLYCQRIGNLALLEVGRG----CKSLQALHL 403 (497)
Q Consensus 335 ~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l 403 (497)
++..+.. .+++|++|++++| .++..+...+ ...+++|++|++++ +.+++.+...+... .++|+.|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccCCccceeeEc
Confidence 6655443 4789999999996 6777764433 44589999999999 57887776665543 369999999
Q ss_pred cCCCCCCHHH---HHHHHHcCCCCcEEecccccccCHHHHHHHHhh----CCCCCeEeecccccccchhHHhh-------
Q 010910 404 VDCSSIGDDA---ICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEH----CNSLTELSLRFCDRYGKFFSPQL------- 469 (497)
Q Consensus 404 ~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~~~~l------- 469 (497)
++| .+++.+ +......+++|+.|++++|. +++.+...+.+. +++|++|++++| .+++.|+..+
T Consensus 321 ~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 321 KSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLAN 397 (461)
T ss_dssp TTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHC
T ss_pred CCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhC
Confidence 997 566554 33444568999999999995 888877776643 679999999999 7887555443
Q ss_pred hhhccccc
Q 010910 470 HSYSHFHL 477 (497)
Q Consensus 470 ~~l~~~~~ 477 (497)
.++..+.+
T Consensus 398 ~~L~~L~l 405 (461)
T 1z7x_W 398 HSLRELDL 405 (461)
T ss_dssp CCCCEEEC
T ss_pred CCccEEEC
Confidence 44555555
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2e-20 Score=174.84 Aligned_cols=206 Identities=20% Similarity=0.324 Sum_probs=112.7
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcc
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 319 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 319 (497)
.+++|++|+++++.+.+.++...+..+++|++|+++++.+.+.....+.. +++|++|+++++..+++..+......+++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 45667777776666665555566666667777776666665554444443 56666666666544555445554444566
Q ss_pred cCeeeccCCCCCChHHHHHHhhcCC-CCCEEeecCCC-CCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 010910 320 LKNLTLSDCYFLSDMGLEAIATGCK-ELTHLEINGCH-NIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKS 397 (497)
Q Consensus 320 L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 397 (497)
|+.|++++|..+++.++......++ +|++|++++|. .+++..+......+++|++|++++|..+++..+..+. .+++
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~ 248 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNY 248 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTT
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCC
Confidence 6666666653355554444444555 66666666554 3554555555555566666666654334444443332 3456
Q ss_pred CcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCC
Q 010910 398 LQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSL 450 (497)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 450 (497)
|+.|++++|..+++.++..+. .+++|+.|++++| +++.++..+...+++|
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L 298 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHL 298 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTS
T ss_pred CCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHHHHHHHHhhCcce
Confidence 666666555444444433332 3556666666655 4554454444334433
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2.3e-19 Score=168.41 Aligned_cols=298 Identities=16% Similarity=0.094 Sum_probs=174.3
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcc
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 215 (497)
.+++|++|+++++. +.... . +..+++|++|+++++.+.+... ...+++|++|+++++. +... .. +..+
T Consensus 42 ~l~~L~~L~l~~~~-i~~~~--~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~-i~~~--~~-~~~l- 109 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASIQ--G-IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK-ITDI--SA-LQNL- 109 (347)
T ss_dssp HHTTCSEEECCSSC-CCCCT--T-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCC--GG-GTTC-
T ss_pred hcccccEEEEeCCc-cccch--h-hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc-ccCc--hH-HcCC-
Confidence 35778888877753 33211 1 3457788888888777654332 3456778888887764 2221 11 2222
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++|++|+++++....... ...+++|++|+++++....... . +..+++|++|+++++.+..... ...+++|+
T Consensus 110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~-~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~ 180 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-P-LSNMTGLNYLTVTESKVKDVTP---IANLTDLY 180 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-G-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCS
T ss_pred CcCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-c-hhhCCCCcEEEecCCCcCCchh---hccCCCCC
Confidence 678888887764222211 3467788888887763222111 1 4567778888887666654322 33567888
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (497)
+|+++++.-..... ...+++|+.|+++++. +.+... ...+++|++|+++++. ++.... ...+++|++|
T Consensus 181 ~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L 248 (347)
T 4fmz_A 181 SLSLNYNQIEDISP----LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWL 248 (347)
T ss_dssp EEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEE
T ss_pred EEEccCCccccccc----ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEE
Confidence 88887653221111 3346778888887764 332211 3457788888887754 332221 3446788888
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEee
Q 010910 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (497)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (497)
++++| .+++.. ....+++|+.|++++| .+++. .. ...+++|+.|++++|. ++......+ ..+++|++|++
T Consensus 249 ~l~~n-~l~~~~---~~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L 318 (347)
T 4fmz_A 249 EIGTN-QISDIN---AVKDLTKLKMLNVGSN-QISDI--SV-LNNLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTLFL 318 (347)
T ss_dssp ECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCCC--GG-GGGCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEEEC
T ss_pred ECCCC-ccCCCh---hHhcCCCcCEEEccCC-ccCCC--hh-hcCCCCCCEEECcCCc-CCCcChhHh-hccccCCEEEc
Confidence 88773 454421 1345678888888775 44432 12 2457788888888875 665444444 46788888888
Q ss_pred cccccccc-hhHHhhhhhccccc
Q 010910 456 RFCDRYGK-FFSPQLHSYSHFHL 477 (497)
Q Consensus 456 ~~~~~l~~-~~~~~l~~l~~~~~ 477 (497)
++|+ ++. ..+..+.++..+.+
T Consensus 319 ~~n~-l~~~~~~~~l~~L~~L~l 340 (347)
T 4fmz_A 319 SQNH-ITDIRPLASLSKMDSADF 340 (347)
T ss_dssp CSSS-CCCCGGGGGCTTCSEESS
T ss_pred cCCc-cccccChhhhhccceeeh
Confidence 8884 433 23455556666555
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=8.1e-20 Score=171.44 Aligned_cols=281 Identities=19% Similarity=0.159 Sum_probs=203.7
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhc
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 214 (497)
..+++|++|+++++. ++.... +..+++|++|++++|.+.+.. . ...+++|++|+++++....... ...+
T Consensus 63 ~~~~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~l~~n~i~~~~~----~~~l 131 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQ-ITDISP---LSNLVKLTNLYIGTNKITDIS--A-LQNLTNLRELYLNEDNISDISP----LANL 131 (347)
T ss_dssp GGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEECTTSCCCCCGG----GTTC
T ss_pred hhcCCccEEEccCCc-cccchh---hhcCCcCCEEEccCCcccCch--H-HcCCCcCCEEECcCCcccCchh----hccC
Confidence 458999999999874 443322 567899999999999876532 2 3467899999999885222211 2233
Q ss_pred ccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCC
Q 010910 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (497)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (497)
++|+.|+++++........ ...+++|++|+++++.+..... +..+++|++|+++++.+.+... ...+++|
T Consensus 132 -~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L 201 (347)
T 4fmz_A 132 -TKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP---LASLTSL 201 (347)
T ss_dssp -TTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGG---GGGCTTC
T ss_pred -CceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCccccccc---ccCCCcc
Confidence 8999999999854443222 3578999999999987765433 5679999999998887765322 4468999
Q ss_pred ceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcE
Q 010910 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (497)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (497)
+.+++.++.-..... ...+++|+.|++++|. +++... ...+++|++|+++++. ++.. . ....+++|++
T Consensus 202 ~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~-~~~~l~~L~~ 269 (347)
T 4fmz_A 202 HYFTAYVNQITDITP----VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDI--N-AVKDLTKLKM 269 (347)
T ss_dssp CEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC--G-GGTTCTTCCE
T ss_pred ceeecccCCCCCCch----hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCC--h-hHhcCCCcCE
Confidence 999998864222111 3458999999999986 443222 4569999999999864 4432 1 2345799999
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEe
Q 010910 375 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 454 (497)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 454 (497)
|++++| .+++.. ....+++|+.|++++| .+++.....+ ..+++|+.|++++|+ ++.... ...+++|++|+
T Consensus 270 L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~ 339 (347)
T 4fmz_A 270 LNVGSN-QISDIS---VLNNLSQLNSLFLNNN-QLGNEDMEVI-GGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSAD 339 (347)
T ss_dssp EECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCGGGHHHH-HTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEES
T ss_pred EEccCC-ccCCCh---hhcCCCCCCEEECcCC-cCCCcChhHh-hccccCCEEEccCCc-cccccC---hhhhhccceee
Confidence 999994 666542 2456899999999997 5665555444 469999999999997 654222 46899999999
Q ss_pred eccc
Q 010910 455 LRFC 458 (497)
Q Consensus 455 l~~~ 458 (497)
+++|
T Consensus 340 l~~N 343 (347)
T 4fmz_A 340 FANQ 343 (347)
T ss_dssp SSCC
T ss_pred hhhh
Confidence 9999
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=5.4e-18 Score=161.28 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=29.2
Q ss_pred HHHhCCCCCEEEccCcccCcHhHHHHHh---hCCCCceEeccCC
Q 010910 159 LAQKCIHLKSLDLQGCYVGDQGLAAVGK---VCNQLEDLNLRFC 199 (497)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~ 199 (497)
.+..+++|++|++++|.+.+.....++. .+++|++|+++++
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~ 70 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 70 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc
Confidence 3456788888888888877776665543 4567777777765
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=7e-17 Score=153.56 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=57.8
Q ss_pred hCCCCceEeccCCCCCCHHHHHHHH---hhcccCccEEecCCCC--CCCh---HHHH---HHHhcCCCCcEEEccCCCCC
Q 010910 187 VCNQLEDLNLRFCEGLTDTGLVDLA---HGCGKSLKSLGIAACV--KITD---VSLE---AVGSHCKSLETLSLDSEFIH 255 (497)
Q Consensus 187 ~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~~L~~L~l~~~~--~~~~---~~~~---~~~~~~~~L~~L~l~~~~~~ 255 (497)
.+++|++|+++++. +.......+. ..+ ++|++|+++++. .+.. ..+. .....+++|++|++++|.+.
T Consensus 30 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT-IGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HCSCCCEEECTTSE-ECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred cCCCccEEECCCCC-CCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 56788888888873 5555444433 233 678888887762 2221 1222 22345677788888777776
Q ss_pred hhHHH---HHHhcCCCCcEEEeecCCCChHHHH
Q 010910 256 NKGVH---AVAQGCPLLRVLKLQCINVTDEALV 285 (497)
Q Consensus 256 ~~~~~---~~~~~~~~L~~L~l~~~~~~~~~l~ 285 (497)
..+.. ..+..+++|++|+++++.+......
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 64332 2334567777777777777554433
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=2.3e-18 Score=168.08 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=26.8
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCC
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (497)
.+++|+.|+++++. +..... +..+++|++|++++|.+..... ...+++|++|+++++
T Consensus 88 ~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 88 NLTKLVDILMNNNQ-IADITP---LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSN 144 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEE
T ss_pred ccccCCEEECCCCc-cccChh---hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCC
Confidence 34556666655542 222111 3345556666665555433221 224455555555544
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=6.1e-18 Score=165.04 Aligned_cols=300 Identities=16% Similarity=0.118 Sum_probs=175.4
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhc
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 214 (497)
..+++|++|+++++. +..... +..+++|++|+++++.+..... ...+++|++|+++++....... ...+
T Consensus 65 ~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~----~~~l 133 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQ-LTDITP---LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP----LKNL 133 (466)
T ss_dssp GGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG----GTTC
T ss_pred hhhcCCCEEECCCCc-cCCchh---hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH----HcCC
Confidence 457999999999864 443321 5678999999999998765433 3467899999999874222111 2223
Q ss_pred ccCccEEecCCCCCCChHHHH-----------------HHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecC
Q 010910 215 GKSLKSLGIAACVKITDVSLE-----------------AVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCI 277 (497)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 277 (497)
++|++|+++++.......+. .....+++|++|+++++.+.... .+..+++|++|+++++
T Consensus 134 -~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 134 -TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNN 209 (466)
T ss_dssp -TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSS
T ss_pred -CCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCC
Confidence 78889888876321111100 00234556666666665544321 1344666666666655
Q ss_pred CCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCC
Q 010910 278 NVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNI 357 (497)
Q Consensus 278 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 357 (497)
.+..... ...+++|+.|+++++. +... . ....+++|+.|++++|. +.... . ...+++|+.|+++++. +
T Consensus 210 ~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l 277 (466)
T 1o6v_A 210 QISDITP---LGILTNLDELSLNGNQ-LKDI--G-TLASLTNLTDLDLANNQ-ISNLA--P-LSGLTKLTELKLGANQ-I 277 (466)
T ss_dssp CCCCCGG---GGGCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSSC-C
T ss_pred ccccccc---ccccCCCCEEECCCCC-cccc--h-hhhcCCCCCEEECCCCc-cccch--h-hhcCCCCCEEECCCCc-c
Confidence 5543221 2345667777776543 2211 1 12236677777777664 32211 1 3447777777777743 3
Q ss_pred ChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCH
Q 010910 358 GTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGN 437 (497)
Q Consensus 358 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 437 (497)
..... ...+++|++|++++ +.+++... ...+++|+.|++++| .+++... ...+++|+.|++++|. +++
T Consensus 278 ~~~~~---~~~l~~L~~L~L~~-n~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~ 345 (466)
T 1o6v_A 278 SNISP---LAGLTALTNLELNE-NQLEDISP---ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSD 345 (466)
T ss_dssp CCCGG---GTTCTTCSEEECCS-SCCSCCGG---GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCC
T ss_pred Ccccc---ccCCCccCeEEcCC-CcccCchh---hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCC
Confidence 32211 33467888888877 34544322 345788888888876 3433221 2467888888888875 554
Q ss_pred HHHHHHHhhCCCCCeEeecccccccc-hhHHhhhhhccccc
Q 010910 438 NGIVAVGEHCNSLTELSLRFCDRYGK-FFSPQLHSYSHFHL 477 (497)
Q Consensus 438 ~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~~~~ 477 (497)
. .. ...+++|+.|++++| ++++ ..+..+.++..+.+
T Consensus 346 ~--~~-l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l 382 (466)
T 1o6v_A 346 V--SS-LANLTNINWLSAGHN-QISDLTPLANLTRITQLGL 382 (466)
T ss_dssp C--GG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEEC
T ss_pred c--hh-hccCCCCCEEeCCCC-ccCccchhhcCCCCCEEec
Confidence 2 22 357888888888888 4433 33455556666655
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=2.6e-19 Score=174.66 Aligned_cols=308 Identities=15% Similarity=0.052 Sum_probs=165.0
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHH-HHhh
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVD-LAHG 213 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~ 213 (497)
..+++|+.|+++++. +........+..+++|++|++++|.+.......+. .+++|++|+++++. +....... .+..
T Consensus 51 ~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 127 (455)
T 3v47_A 51 SRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN-GLANLEVLTLTQCN-LDGAVLSGNFFKP 127 (455)
T ss_dssp SSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT-TCTTCCEEECTTSC-CBTHHHHSSTTTT
T ss_pred ccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhhcc-CcccCCEEeCCCCC-CCccccCcccccC
Confidence 357888889888753 22111122234678899999998876554333343 45789999998875 33322211 1222
Q ss_pred cccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHh-----------------------------
Q 010910 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQ----------------------------- 264 (497)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------------------- 264 (497)
.++|++|+++++.. .......+...+++|++|++++|.+.......+..
T Consensus 128 -l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 128 -LTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp -CTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred -cccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 27889999888642 22211222357888999999887654332211111
Q ss_pred ----cCCCCcEEEeecCCCChHHHHHHHhc--CCCCceeecccccCCCH------------HHHHHHhccCcccCeeecc
Q 010910 265 ----GCPLLRVLKLQCINVTDEALVAVGNQ--CLSLELLALYSFQQFTD------------KGLHAVGKGCKKLKNLTLS 326 (497)
Q Consensus 265 ----~~~~L~~L~l~~~~~~~~~l~~l~~~--~~~L~~L~l~~~~~~~~------------~~~~~l~~~~~~L~~L~l~ 326 (497)
.+++|++|+++++.+.......+... .++|+.|+++++..... ..+.. ...++|+.|+++
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~ 283 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG--LEASGVKTCDLS 283 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG--GTTSCCCEEECC
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccc--ccccCceEEEec
Confidence 12445555555555544333333221 24555555543311100 00000 012467777777
Q ss_pred CCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCC
Q 010910 327 DCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDC 406 (497)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (497)
++. ++... ......+++|++|+++++. +....... ...+++|++|++++ +.++..... ....+++|+.|+++++
T Consensus 284 ~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 284 KSK-IFALL-KSVFSHFTDLEQLTLAQNE-INKIDDNA-FWGLTHLLKLNLSQ-NFLGSIDSR-MFENLDKLEVLDLSYN 357 (455)
T ss_dssp SSC-CCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCS-SCCCEECGG-GGTTCTTCCEEECCSS
T ss_pred Ccc-ccccc-hhhcccCCCCCEEECCCCc-ccccChhH-hcCcccCCEEECCC-CccCCcChh-HhcCcccCCEEECCCC
Confidence 654 33221 1222347788888887743 43322111 23367888888877 455443221 2235788888888875
Q ss_pred CCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc
Q 010910 407 SSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459 (497)
Q Consensus 407 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (497)
.++......+ ..+++|+.|++++|. ++..... ....+++|++|++++|+
T Consensus 358 -~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 358 -HIRALGDQSF-LGLPNLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -CCCEECTTTT-TTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred -cccccChhhc-cccccccEEECCCCc-cccCCHh-HhccCCcccEEEccCCC
Confidence 4443222222 357788888888874 5532221 22467888888888774
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=3.3e-20 Score=192.04 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccccccc---chhHHhhhh
Q 010910 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYG---KFFSPQLHS 471 (497)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~ 471 (497)
+++|+.|++++| .++.. ++.....+++|+.|++++|. ++.... .....+++|++|++++| .++ +..+..+.+
T Consensus 393 ~~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGK-IPPTLSNCSELVSLHLSFNY-LSGTIP-SSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKT 467 (768)
T ss_dssp TCCCCEEECCSS-EEEEE-CCGGGGGCTTCCEEECCSSE-EESCCC-GGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTT
T ss_pred cCCccEEECCCC-ccccc-cCHHHhcCCCCCEEECcCCc-ccCccc-HHHhcCCCCCEEECCCC-cccCcCCHHHcCCCC
Confidence 456777777665 22211 11222457788888888775 432211 22246788888888888 343 244555566
Q ss_pred hcccccc
Q 010910 472 YSHFHLG 478 (497)
Q Consensus 472 l~~~~~~ 478 (497)
+..+.+.
T Consensus 468 L~~L~L~ 474 (768)
T 3rgz_A 468 LETLILD 474 (768)
T ss_dssp CCEEECC
T ss_pred ceEEEec
Confidence 6666653
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=2.1e-19 Score=181.78 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=25.5
Q ss_pred cCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc--cccchhHHhhhhhccccc
Q 010910 420 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD--RYGKFFSPQLHSYSHFHL 477 (497)
Q Consensus 420 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~l~~l~~~~~ 477 (497)
.+++|+.|++++|. ++......+ .++++| +|++++|. .+.+..+..+.++..+.+
T Consensus 498 ~l~~L~~L~Ls~N~-l~~~~~~~l-~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 498 SLKMMNHVDLSHNR-LTSSSIEAL-SHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp TCTTCCEEECCSSC-CCGGGGGGG-TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred cccCCCEEECCCCc-cCcCChhHh-Cccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 35555555555553 443322222 345555 55555552 112233444555555554
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.68 E-value=3.3e-17 Score=162.51 Aligned_cols=314 Identities=18% Similarity=0.120 Sum_probs=160.1
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCC---HHHHHHHH
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT---DTGLVDLA 211 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~ 211 (497)
..+++|+.|+++++. ++... ...+..+++|++|++++|.+..-... .+++|++|+++++.... +..+..
T Consensus 42 ~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~-- 113 (520)
T 2z7x_B 42 LSLSKLRILIISHNR-IQYLD-ISVFKFNQELEYLDLSHNKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGN-- 113 (520)
T ss_dssp TTCTTCCEEECCSSC-CCEEE-GGGGTTCTTCCEEECCSSCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGG--
T ss_pred cccccccEEecCCCc-cCCcC-hHHhhcccCCCEEecCCCceeecCcc----ccCCccEEeccCCccccccchhhhcc--
Confidence 457888888888753 44321 12234678888888888876532111 46788888888774211 122222
Q ss_pred hhcccCccEEecCCCCCCChHHHHHHHhcCCCC--cEEEccCCCC--Chh------------------------------
Q 010910 212 HGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL--ETLSLDSEFI--HNK------------------------------ 257 (497)
Q Consensus 212 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~------------------------------ 257 (497)
. ++|++|+++++. +.... ...+++| ++|+++++.+ ...
T Consensus 114 --l-~~L~~L~L~~n~-l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 185 (520)
T 2z7x_B 114 --M-SQLKFLGLSTTH-LEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185 (520)
T ss_dssp --C-TTCCEEEEEESS-CCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC
T ss_pred --C-CcceEEEecCcc-cchhh----ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhh
Confidence 2 788888888754 33322 2356667 8888877654 110
Q ss_pred -------------------------HHHHHHhcCCCCcEEEeecCCCChHHHHHHHh--cCCCCceeecccccC---CC-
Q 010910 258 -------------------------GVHAVAQGCPLLRVLKLQCINVTDEALVAVGN--QCLSLELLALYSFQQ---FT- 306 (497)
Q Consensus 258 -------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~---~~- 306 (497)
+....+..+++|+.|++..+.+.+..+..+.. ..++|++|+++++.- +.
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred hhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 00111233556666666555555444333221 135677776654420 00
Q ss_pred --------------------------HHHHHHHh---------------------ccCcccCeeeccCCCCCChHHHHHH
Q 010910 307 --------------------------DKGLHAVG---------------------KGCKKLKNLTLSDCYFLSDMGLEAI 339 (497)
Q Consensus 307 --------------------------~~~~~~l~---------------------~~~~~L~~L~l~~~~~~~~~~~~~l 339 (497)
...+..+. ..+++|+.|+++++. +++.....+
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 344 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENC 344 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTTTTC
T ss_pred chhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc-cChhhhhhh
Confidence 01222220 235566666666653 332111122
Q ss_pred hhcCCCCCEEeecCCCCCCh-hHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHH
Q 010910 340 ATGCKELTHLEINGCHNIGT-MGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIA 418 (497)
Q Consensus 340 ~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 418 (497)
..+++|++|+++++. ++. ..+......+++|++|++++ +.+...........+++|+.|+++++ .++....
T Consensus 345 -~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~---- 416 (520)
T 2z7x_B 345 -GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIF---- 416 (520)
T ss_dssp -CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCS-SCCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGG----
T ss_pred -ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCC-CcCCcccccchhccCccCCEEECcCC-CCCcchh----
Confidence 346666777776643 332 22333344566777777766 34433111111223466666666664 3332211
Q ss_pred HcC-CCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccc---hhHHhhhhhccccc
Q 010910 419 EGC-QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGK---FFSPQLHSYSHFHL 477 (497)
Q Consensus 419 ~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~~~~ 477 (497)
..+ ++|+.|++++|. ++ .+......+++|++|++++| +++. ..+..+.++..+.+
T Consensus 417 ~~l~~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 417 RCLPPRIKVLDLHSNK-IK--SIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp GSCCTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred hhhcccCCEEECCCCc-cc--ccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEEC
Confidence 122 467777777764 54 22222236777777777777 4432 22444455555554
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=5.6e-19 Score=182.87 Aligned_cols=321 Identities=17% Similarity=0.154 Sum_probs=161.3
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHH--HhhCCCCceEeccCCCCCCHHHHHHHHhh
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAV--GKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 213 (497)
.+++|++|+++++. +.......+...+++|++|++++|.+.......+ ...+++|++|+++++........ ..
T Consensus 124 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~ 198 (768)
T 3rgz_A 124 SCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SR 198 (768)
T ss_dssp GCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TT
T ss_pred CCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----cc
Confidence 35666666666542 2211111111345666666666666544333221 33456666666666531111111 11
Q ss_pred cccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCC
Q 010910 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (497)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (497)
.++|++|+++++....... . ...+++|++|++++|.+..... ..+..+++|++|+++++.+....... .+++
T Consensus 199 -l~~L~~L~Ls~n~l~~~~~--~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~ 270 (768)
T 3rgz_A 199 -CVNLEFLDVSSNNFSTGIP--F-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL---PLKS 270 (768)
T ss_dssp -CTTCCEEECCSSCCCSCCC--B-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC---CCTT
T ss_pred -CCcCCEEECcCCcCCCCCc--c-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc---ccCC
Confidence 2567777776653222111 1 2356677777777666554322 23345677777777665543211110 3566
Q ss_pred CceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCc
Q 010910 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLT 373 (497)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 373 (497)
|++|++.++. +.......+...+++|+.|++++|. ++... ......+++|++|+++++. +....-......+++|+
T Consensus 271 L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~-p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 271 LQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNH-FYGAV-PPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSE-EEECC-CGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCC
T ss_pred CCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCc-CCCcc-chHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCC
Confidence 7777776542 1100000111124677777777664 22111 1122347778888877743 22111112233467788
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHH-cCCCCcEEecccccccCHHHHHHHHhhCCCCCe
Q 010910 374 ELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAE-GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTE 452 (497)
Q Consensus 374 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 452 (497)
+|++++| .++......+....++|+.|+++++ .++......+.. .+++|+.|++++|. ++... .....++++|++
T Consensus 347 ~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~ 422 (768)
T 3rgz_A 347 VLDLSFN-EFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNG-FTGKI-PPTLSNCSELVS 422 (768)
T ss_dssp EEECCSS-EEEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSE-EEEEC-CGGGGGCTTCCE
T ss_pred EEeCcCC-ccCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCc-ccccc-CHHHhcCCCCCE
Confidence 8888774 3332111112221237888888775 332211111111 16788889888885 44221 222357899999
Q ss_pred Eeeccccccc---chhHHhhhhhcccccc
Q 010910 453 LSLRFCDRYG---KFFSPQLHSYSHFHLG 478 (497)
Q Consensus 453 L~l~~~~~l~---~~~~~~l~~l~~~~~~ 478 (497)
|++++| .++ +..+..+.++..+.+.
T Consensus 423 L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 423 LHLSFN-YLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp EECCSS-EEESCCCGGGGGCTTCCEEECC
T ss_pred EECcCC-cccCcccHHHhcCCCCCEEECC
Confidence 999998 443 3556666777777664
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=3.7e-18 Score=166.43 Aligned_cols=322 Identities=18% Similarity=0.094 Sum_probs=190.2
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCC--CHHHHHHHHhhcc
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL--TDTGLVDLAHGCG 215 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~~~~ 215 (497)
++|++|+++++. ++... ...+..+++|++|+++++.+...........+++|++|+++++... .+..+.. .
T Consensus 30 ~~l~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l 102 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-----L 102 (455)
T ss_dssp TTCCEEECCSSC-CCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-----C
T ss_pred CccCEEEecCCc-cCcCC-hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-----c
Confidence 789999999853 54322 2234578999999999997642222222335689999999987521 1222222 2
Q ss_pred cCccEEecCCCCCCChHHHH-HHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHh-cCCC
Q 010910 216 KSLKSLGIAACVKITDVSLE-AVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGN-QCLS 293 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~-~~~~ 293 (497)
++|++|+++++. +...... .....+++|++|++++|.+.......++..+++|++|+++++.+.......+.. ..++
T Consensus 103 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 103 ANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp TTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred ccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 799999999975 3332222 224578999999999988765543444567899999999887765422111111 0134
Q ss_pred CceeecccccCCCH--HH--HHH--HhccCcccCeeeccCCCCCChHHHHHHhh--------------------------
Q 010910 294 LELLALYSFQQFTD--KG--LHA--VGKGCKKLKNLTLSDCYFLSDMGLEAIAT-------------------------- 341 (497)
Q Consensus 294 L~~L~l~~~~~~~~--~~--~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-------------------------- 341 (497)
|+.|++.++..... .. ... ....+++|+.|+++++. ++......+..
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 44444443211000 00 000 00012344444444432 22222221111
Q ss_pred ------------cCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCC
Q 010910 342 ------------GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSI 409 (497)
Q Consensus 342 ------------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (497)
..++|+.|+++++. +.... ......+++|++|++++ +.+++..... ...+++|+.|+++++ .+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~~L~~L~Ls~N-~l 335 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSK-IFALL-KSVFSHFTDLEQLTLAQ-NEINKIDDNA-FWGLTHLLKLNLSQN-FL 335 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEECCSS-CC
T ss_pred hccCcccccccccccCceEEEecCcc-ccccc-hhhcccCCCCCEEECCC-CcccccChhH-hcCcccCCEEECCCC-cc
Confidence 13578888888743 33221 22234578999999988 5565432222 235799999999986 45
Q ss_pred CHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccc---hhHHhhhhhccccc
Q 010910 410 GDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGK---FFSPQLHSYSHFHL 477 (497)
Q Consensus 410 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~~~~ 477 (497)
+.... .....+++|+.|++++|. ++......+ ..+++|++|++++| +++. ..+..+.++..+.+
T Consensus 336 ~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 336 GSIDS-RMFENLDKLEVLDLSYNH-IRALGDQSF-LGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CEECG-GGGTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred CCcCh-hHhcCcccCCEEECCCCc-ccccChhhc-cccccccEEECCCC-ccccCCHhHhccCCcccEEEc
Confidence 43222 223468999999999985 654322233 57899999999998 5544 34556677777766
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=4.1e-17 Score=163.03 Aligned_cols=160 Identities=18% Similarity=0.107 Sum_probs=98.2
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhc
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 214 (497)
..+++|++|+++++. ++... ...+..+++|++|++++|.+.......+. .+++|++|+++++. +...........+
T Consensus 47 ~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~~~~l 122 (549)
T 2z81_A 47 RACANLQVLILKSSR-INTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSSLKYLNLMGNP-YQTLGVTSLFPNL 122 (549)
T ss_dssp SSCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTTCCEEECTTCC-CSSSCSSCSCTTC
T ss_pred hcCCcccEEECCCCC-cCccC-hhhccccccCCEEECCCCccCccCHHHhc-cCCCCcEEECCCCc-ccccchhhhhhcc
Confidence 456888888888753 44322 12234678888888888887655444454 56888888888774 2211000111222
Q ss_pred ccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCC
Q 010910 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (497)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (497)
++|++|+++++......... ....+++|++|+++++.+...... .+..+++|++|+++.+..... ...+...+++|
T Consensus 123 -~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L 198 (549)
T 2z81_A 123 -TNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFL-LEIFADILSSV 198 (549)
T ss_dssp -TTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTB
T ss_pred -CCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChh-hhhccccCceEecccCccccc-chhhHhhcccc
Confidence 68888888876433322111 124678888888888776543222 234578888888877766432 22334457899
Q ss_pred ceeecccc
Q 010910 295 ELLALYSF 302 (497)
Q Consensus 295 ~~L~l~~~ 302 (497)
++|+++++
T Consensus 199 ~~L~L~~n 206 (549)
T 2z81_A 199 RYLELRDT 206 (549)
T ss_dssp SEEEEESC
T ss_pred cEEEccCC
Confidence 99999775
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1e-17 Score=172.51 Aligned_cols=302 Identities=10% Similarity=0.039 Sum_probs=155.8
Q ss_pred HhhCCCCcEEeeccCCCcChH----------------HHHHHH--HhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEe
Q 010910 134 ADGFSKLEKLSLIWCSNISSL----------------GLMSLA--QKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLN 195 (497)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 195 (497)
...+++|+.|+++++. ++.. .++.-+ ..+++|++|++++|.+.......+. .+++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEE
Confidence 3457899999998853 5541 122222 2788999999998875444333343 568999999
Q ss_pred ccCCCCCCH----HHHHHHH--hhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCC
Q 010910 196 LRFCEGLTD----TGLVDLA--HGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL 269 (497)
Q Consensus 196 l~~~~~~~~----~~~~~l~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 269 (497)
++++..+.. ..+..+. ....++|+.|+++++.. ...+.......+++|++|++++|.+.. +. .+..+++|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~L 597 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVKL 597 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSEE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCcc
Confidence 998853443 2233331 01125899999988643 221110133578899999998887762 22 34567888
Q ss_pred cEEEeecCCCChHHHHHHHhcCCC-CceeecccccCCCHHHHHHHhccC--cccCeeeccCCCCCChHHHHHHh-----h
Q 010910 270 RVLKLQCINVTDEALVAVGNQCLS-LELLALYSFQQFTDKGLHAVGKGC--KKLKNLTLSDCYFLSDMGLEAIA-----T 341 (497)
Q Consensus 270 ~~L~l~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~--~~L~~L~l~~~~~~~~~~~~~l~-----~ 341 (497)
+.|+++++.+.. +......+++ |+.|+++++. +. .++...... ++|+.|++++|. +... +..+. .
T Consensus 598 ~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~-L~--~lp~~~~~~~~~~L~~L~Ls~N~-l~g~-ip~l~~~l~~~ 670 (876)
T 4ecn_A 598 TDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNK-LK--YIPNIFNAKSVYVMGSVDFSYNK-IGSE-GRNISCSMDDY 670 (876)
T ss_dssp SEEECCSSCCSC--CCTTSCEECTTCCEEECCSSC-CC--SCCSCCCTTCSSCEEEEECCSSC-TTTT-SSSCSSCTTTC
T ss_pred eEEECcCCcccc--chHHHhhccccCCEEECcCCC-CC--cCchhhhccccCCCCEEECcCCc-CCCc-cccchhhhccc
Confidence 888888777662 2111234566 8888887753 32 111111111 236666666654 2210 00000 0
Q ss_pred cCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHH------HhcCCCCcEEeccCCCCCCHHHHH
Q 010910 342 GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEV------GRGCKSLQALHLVDCSSIGDDAIC 415 (497)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~ 415 (497)
..++|+.|+++++. ++... ..+...+++|+.|++++ +.++....... ..++++|+.|++++| .++ .++
T Consensus 671 ~~~~L~~L~Ls~N~-L~~lp-~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~--~lp 744 (876)
T 4ecn_A 671 KGINASTVTLSYNE-IQKFP-TELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT--SLS 744 (876)
T ss_dssp CCCCEEEEECCSSC-CCSCC-HHHHHTTCCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC--CCC
T ss_pred cCCCcCEEEccCCc-CCccC-HHHHccCCCCCEEECCC-CcCCccChHHhccccccccccCCccEEECCCC-CCc--cch
Confidence 12356666666532 33111 22233356666666655 33331100000 001225666666554 333 112
Q ss_pred HHHH--cCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecc
Q 010910 416 SIAE--GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRF 457 (497)
Q Consensus 416 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 457 (497)
.... .+++|+.|++++|. ++. +.....++++|+.|++++
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCC
T ss_pred HHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCC
Confidence 2111 35556666665553 332 222223555555555544
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=1.5e-16 Score=159.02 Aligned_cols=104 Identities=24% Similarity=0.208 Sum_probs=66.8
Q ss_pred cccCCccccchhhHHHH----HhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCc
Q 010910 117 QFQSESYYLSDSGLNAL----ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLE 192 (497)
Q Consensus 117 ~~~l~~~~~~~~~l~~l----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 192 (497)
+.+|+.+.++...+..+ ...+++|+.|+++++. +.... ...+..+++|++|++++|.+...........+++|+
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 34566666655443222 2457899999999863 54433 233467999999999999876432222234668999
Q ss_pred eEeccCCCCCCH---HHHHHHHhhcccCccEEecCCCC
Q 010910 193 DLNLRFCEGLTD---TGLVDLAHGCGKSLKSLGIAACV 227 (497)
Q Consensus 193 ~L~l~~~~~~~~---~~~~~l~~~~~~~L~~L~l~~~~ 227 (497)
+|+++++..... ..+.. .++|++|+++++.
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~-----l~~L~~L~L~~n~ 159 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAG-----LTSLNELEIKALS 159 (549)
T ss_dssp EEEEEESSSCCEECTTTTTT-----CCEEEEEEEEETT
T ss_pred EEECCCCccccccCHhhhhc-----ccccCeeeccCCc
Confidence 999998753322 12222 2789999998763
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=1.5e-17 Score=158.59 Aligned_cols=295 Identities=15% Similarity=0.076 Sum_probs=175.1
Q ss_pred HhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhh
Q 010910 134 ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (497)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 213 (497)
...+++|+.|+++++. +..... ..+..+++|++|+++++.+.......+ ..+++|++|+++++. +..... ..+..
T Consensus 65 ~~~l~~L~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~-~~~~~ 139 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQ-IEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERND-LSSLPR-GIFHN 139 (390)
T ss_dssp HHHCCCCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTT
T ss_pred hcccccCcEEECCCCc-ccccCh-hhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCCEEECCCCc-cCcCCH-HHhcC
Confidence 3456777777777643 332211 123456777777777777554332222 245777777777763 221000 00111
Q ss_pred cccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCC
Q 010910 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (497)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (497)
.++|++|+++++. +...... ....+++|++|+++++.+.... ...+++|+.|+++++.+... ...++
T Consensus 140 -l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~------~~~~~ 206 (390)
T 3o6n_A 140 -TPKLTTLSMSNNN-LERIEDD-TFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTL------AIPIA 206 (390)
T ss_dssp -CTTCCEEECCSSC-CCBCCTT-TTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEE------ECCSS
T ss_pred -CCCCcEEECCCCc-cCccChh-hccCCCCCCEEECCCCcCCccc----cccccccceeeccccccccc------CCCCc
Confidence 2677777777753 2211111 1235677777777777665442 23467777777776666532 12467
Q ss_pred CceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCc
Q 010910 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLT 373 (497)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 373 (497)
|+.|+++++. +.... ....++|+.|+++++. +++. . ....+++|++|+++++ .+...... ....+++|+
T Consensus 207 L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~ 275 (390)
T 3o6n_A 207 VEELDASHNS-INVVR----GPVNVELTILKLQHNN-LTDT--A-WLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLE 275 (390)
T ss_dssp CSEEECCSSC-CCEEE----CCCCSSCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCC
T ss_pred ceEEECCCCe-eeecc----ccccccccEEECCCCC-Cccc--H-HHcCCCCccEEECCCC-cCCCcChh-HccccccCC
Confidence 8888887653 22110 0124689999998875 4432 2 2345899999999985 34433212 223478999
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeE
Q 010910 374 ELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTEL 453 (497)
Q Consensus 374 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 453 (497)
+|++++ +.++... .....+++|+.|+++++ .++. ++.....+++|+.|++++|. ++... ...+++|+.|
T Consensus 276 ~L~L~~-n~l~~~~--~~~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L 344 (390)
T 3o6n_A 276 RLYISN-NRLVALN--LYGQPIPTLKVLDLSHN-HLLH--VERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNL 344 (390)
T ss_dssp EEECCS-SCCCEEE--CSSSCCTTCCEEECCSS-CCCC--CGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEE
T ss_pred EEECCC-CcCcccC--cccCCCCCCCEEECCCC-ccee--cCccccccCcCCEEECCCCc-cceeC----chhhccCCEE
Confidence 999988 5565421 11235789999999986 4442 12122357899999999986 55432 3578899999
Q ss_pred eecccccccchhHHhh
Q 010910 454 SLRFCDRYGKFFSPQL 469 (497)
Q Consensus 454 ~l~~~~~l~~~~~~~l 469 (497)
++++| .++.+....+
T Consensus 345 ~l~~N-~~~~~~~~~~ 359 (390)
T 3o6n_A 345 TLSHN-DWDCNSLRAL 359 (390)
T ss_dssp ECCSS-CEEHHHHHHH
T ss_pred EcCCC-CccchhHHHH
Confidence 99998 5666555543
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=7.1e-19 Score=177.98 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=38.0
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCC
Q 010910 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN 448 (497)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (497)
+++|++|++++ +.+++.........+++|+.|++++| .++.... .....+++|+.|++++|. ++...... ..+++
T Consensus 447 l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~ 521 (606)
T 3vq2_A 447 LTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDSSH-YNQLY 521 (606)
T ss_dssp CTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEGGG-TTTCT
T ss_pred CCCCCEEECCC-CcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCHHH-ccCCC
Confidence 45555555555 23322111111223556666666554 3332111 111245666666666653 43221111 23556
Q ss_pred CCCeEeeccc
Q 010910 449 SLTELSLRFC 458 (497)
Q Consensus 449 ~L~~L~l~~~ 458 (497)
+|++|++++|
T Consensus 522 ~L~~L~l~~N 531 (606)
T 3vq2_A 522 SLSTLDCSFN 531 (606)
T ss_dssp TCCEEECTTS
T ss_pred cCCEEECCCC
Confidence 6666666666
No 26
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1.3e-14 Score=136.54 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=57.5
Q ss_pred HHHHHHhCCCCCEEEccCcccCcHhHHHHH---hhCC-CCceEeccCCCCCCH---HHHHHHHhhcccCccEEecCCCCC
Q 010910 156 LMSLAQKCIHLKSLDLQGCYVGDQGLAAVG---KVCN-QLEDLNLRFCEGLTD---TGLVDLAHGCGKSLKSLGIAACVK 228 (497)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~L~~L~l~~~~~~~~---~~~~~l~~~~~~~L~~L~l~~~~~ 228 (497)
+..+....++|++|++++|.+++.....+. ..++ +|++|+++++. +.+ ..+........++|++|+++++.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 344444445577777777776655442222 2344 67777777663 332 23333322222456666666543
Q ss_pred CCh---HHHHHHHhcC-CCCcEEEccCCCCChhHHHHHHh---c-CCCCcEEEeecCCCC
Q 010910 229 ITD---VSLEAVGSHC-KSLETLSLDSEFIHNKGVHAVAQ---G-CPLLRVLKLQCINVT 280 (497)
Q Consensus 229 ~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~-~~~L~~L~l~~~~~~ 280 (497)
+.. ..+......+ ++|++|++++|.+.+.+...+.. . .++|++|+++++.+.
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 221 1222222233 45555555555544433333221 1 234555555444444
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=7.6e-17 Score=153.61 Aligned_cols=302 Identities=14% Similarity=0.083 Sum_probs=201.5
Q ss_pred CCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCC--CCHHHHHHHHhhc
Q 010910 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG--LTDTGLVDLAHGC 214 (497)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~ 214 (497)
+++++.|++.++. ++... ...+..+++|++|+++++.+.......+. .+++|++|+++++.. +.+..+. .
T Consensus 44 l~~l~~l~l~~~~-l~~l~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~----~- 115 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQ----N- 115 (390)
T ss_dssp GCCCSEEEEESCE-ESEEC-THHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTT----T-
T ss_pred cCCceEEEecCCc-hhhCC-hhHhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCCCCcCCHHHhc----C-
Confidence 5889999998753 44322 23456789999999999987654333333 568999999998742 1111122 2
Q ss_pred ccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCC
Q 010910 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (497)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (497)
.++|++|+++++. +.... ..+...+++|++|+++++.+..... ..+..+++|++|+++++.+.... ...+++|
T Consensus 116 l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L 188 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSSLP-RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD----LSLIPSL 188 (390)
T ss_dssp CTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCC----GGGCTTC
T ss_pred CCCCCEEECCCCc-cCcCC-HHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccc----ccccccc
Confidence 2789999999864 22211 1122468899999999987754322 22356899999999888876542 2357899
Q ss_pred ceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcE
Q 010910 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (497)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (497)
+.|+++++. +... ...++|+.|+++++. +.... ....++|+.|+++++. ++.. .....+++|++
T Consensus 189 ~~L~l~~n~-l~~~------~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~ 252 (390)
T 3o6n_A 189 FHANVSYNL-LSTL------AIPIAVEELDASHNS-INVVR----GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVE 252 (390)
T ss_dssp SEEECCSSC-CSEE------ECCSSCSEEECCSSC-CCEEE----CCCCSSCCEEECCSSC-CCCC---GGGGGCTTCSE
T ss_pred ceeeccccc-cccc------CCCCcceEEECCCCe-eeecc----ccccccccEEECCCCC-Cccc---HHHcCCCCccE
Confidence 999998753 3211 224689999999875 33221 1235789999999854 4433 12345799999
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEe
Q 010910 375 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 454 (497)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 454 (497)
|++++ +.+++..... ...+++|+.|+++++ .++.. ......+++|+.|++++|. ++. +......+++|++|+
T Consensus 253 L~Ls~-n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 253 VDLSY-NELEKIMYHP-FVKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLY 324 (390)
T ss_dssp EECCS-SCCCEEESGG-GTTCSSCCEEECCSS-CCCEE--ECSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEE
T ss_pred EECCC-CcCCCcChhH-ccccccCCEEECCCC-cCccc--CcccCCCCCCCEEECCCCc-cee--cCccccccCcCCEEE
Confidence 99998 5665532222 245899999999986 45432 1222458999999999985 553 222224688999999
Q ss_pred ecccccccchhHHhhhhhcccccc
Q 010910 455 LRFCDRYGKFFSPQLHSYSHFHLG 478 (497)
Q Consensus 455 l~~~~~l~~~~~~~l~~l~~~~~~ 478 (497)
+++| .++...+..+.++..+.+.
T Consensus 325 L~~N-~i~~~~~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 325 LDHN-SIVTLKLSTHHTLKNLTLS 347 (390)
T ss_dssp CCSS-CCCCCCCCTTCCCSEEECC
T ss_pred CCCC-ccceeCchhhccCCEEEcC
Confidence 9999 6777667777778777763
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=7.1e-18 Score=170.60 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=93.7
Q ss_pred HhhCCCCcEEeeccCCCcChH----------------HHHHHHH--hCCCCCEEEccCcccCcHhHHHHHhhCCCCceEe
Q 010910 134 ADGFSKLEKLSLIWCSNISSL----------------GLMSLAQ--KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLN 195 (497)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 195 (497)
...+++|+.|+++++. ++.. .+...+. ++++|++|++++|.+.......+. .+++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEE
Confidence 3457889999998754 5541 0222233 688899999998875544333333 557899999
Q ss_pred ccCCCCCCH----HHHHHHH-hhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCc
Q 010910 196 LRFCEGLTD----TGLVDLA-HGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLR 270 (497)
Q Consensus 196 l~~~~~~~~----~~~~~l~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 270 (497)
++++..++. ..+..+. ....++|++|+++++. +...........+++|++|++++|.+..... .+..+++|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~ 356 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLA 356 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEES
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCC
Confidence 988753443 2222221 0112688999988864 2221111133578888888888877652211 234456777
Q ss_pred EEEeecCCCChHHHHHHHhcCCC-Cceeecccc
Q 010910 271 VLKLQCINVTDEALVAVGNQCLS-LELLALYSF 302 (497)
Q Consensus 271 ~L~l~~~~~~~~~l~~l~~~~~~-L~~L~l~~~ 302 (497)
+|+++++.+.. +..-...+++ |++|+++++
T Consensus 357 ~L~L~~N~l~~--lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 357 SLNLAYNQITE--IPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EEECCSSEEEE--CCTTSEEECTTCCEEECCSS
T ss_pred EEECCCCcccc--ccHhhhhhcccCcEEEccCC
Confidence 77776655441 1111223455 777777654
No 29
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=4e-14 Score=133.10 Aligned_cols=263 Identities=12% Similarity=0.123 Sum_probs=116.8
Q ss_pred EEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCH---HHHHHHHhhccc-CccEEecCCCCCCChH---HHHHHHhcC
Q 010910 169 LDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD---TGLVDLAHGCGK-SLKSLGIAACVKITDV---SLEAVGSHC 241 (497)
Q Consensus 169 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~~ 241 (497)
++++.+.+... +..+....++|++|+++++. +.+ ..+...+... + +|++|+++++. +... .+.......
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANT-PASVTSLNLSGNS-LGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTC-CTTCCEEECCSSC-GGGSCHHHHHHHHHTS
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhC-CCceeEEECcCCC-CCHHHHHHHHHHHhcc
Confidence 45666655443 33334344557888877764 332 2222333333 3 66666666652 2222 222222222
Q ss_pred -CCCcEEEccCCCCChhHHHHH---HhcC-CCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhcc
Q 010910 242 -KSLETLSLDSEFIHNKGVHAV---AQGC-PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKG 316 (497)
Q Consensus 242 -~~L~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 316 (497)
++|++|++++|.+.+.....+ +..+ ++|++|+++++.+++.....+ ......
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-----------------------~~~l~~ 135 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF-----------------------KQAFSN 135 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH-----------------------HHHHTT
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH-----------------------HHHHHh
Confidence 566666666665544333222 2223 556666665555544322222 222222
Q ss_pred -CcccCeeeccCCCCCChHHHHHH---hhcCC-CCCEEeecCCCCCChhHHH---HHHhhC-CCCcEEecCCCCCCChHH
Q 010910 317 -CKKLKNLTLSDCYFLSDMGLEAI---ATGCK-ELTHLEINGCHNIGTMGLE---SIGKFC-RNLTELALLYCQRIGNLA 387 (497)
Q Consensus 317 -~~~L~~L~l~~~~~~~~~~~~~l---~~~~~-~L~~L~l~~~~~~~~~~~~---~l~~~~-~~L~~L~l~~~~~~~~~~ 387 (497)
.++|+.|++++|. +++.+...+ ....+ +|++|++++| .++..+.. .....+ ++|++|++++ +.+++.+
T Consensus 136 ~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~ 212 (362)
T 3goz_A 136 LPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSA-NLLGLKS 212 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSC
T ss_pred CCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhH
Confidence 1345555555443 332222221 11232 5555555553 23322222 222223 3566666655 3444433
Q ss_pred HHHHHh----cCCCCcEEeccCCCCCCHHHH---HHHHHcCCCCcEEeccccc--ccCHHHHHHHHh---hCCCCCeEee
Q 010910 388 LLEVGR----GCKSLQALHLVDCSSIGDDAI---CSIAEGCQNLKKLHIRRCY--KIGNNGIVAVGE---HCNSLTELSL 455 (497)
Q Consensus 388 ~~~~~~----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~---~~~~L~~L~l 455 (497)
...+.. ..++|+.|+++++ .+++.+. ..+...+++|+.|++++|. .+++.++..+.. .+++|+.|++
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 222211 1245666666653 4444322 2222345566666666653 244444444443 3344556666
Q ss_pred cccccccc
Q 010910 456 RFCDRYGK 463 (497)
Q Consensus 456 ~~~~~l~~ 463 (497)
+++ .+++
T Consensus 292 ~~N-~l~~ 298 (362)
T 3goz_A 292 NGK-EIHP 298 (362)
T ss_dssp TSC-BCCG
T ss_pred CCC-cCCC
Confidence 666 3444
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=1.5e-17 Score=168.31 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=34.6
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++|++|+++++. +.. +......+++|++|+++++.+..... ..+..+++|++|+++++.+...........+++|+
T Consensus 278 ~~L~~L~l~~n~-l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 278 SGLQELDLTATH-LSE--LPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCSEEECTTSC-CSC--CCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cCCCEEeccCCc-cCC--CChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 456666666542 111 00011345566666666555443211 11233555555555544332111111112345555
Q ss_pred eeeccc
Q 010910 296 LLALYS 301 (497)
Q Consensus 296 ~L~l~~ 301 (497)
+|++++
T Consensus 354 ~L~l~~ 359 (606)
T 3t6q_A 354 ELDLSH 359 (606)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555544
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=5.8e-17 Score=162.99 Aligned_cols=293 Identities=15% Similarity=0.074 Sum_probs=177.2
Q ss_pred HhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhh
Q 010910 134 ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (497)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 213 (497)
...+++|+.|+++++. +..... ..+..+++|++|++++|.+.......+ ..+++|++|+++++. +..... ..+..
T Consensus 71 ~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~-~~~~~ 145 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQ-IEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERND-LSSLPR-GIFHN 145 (597)
T ss_dssp HHHCCCCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTT
T ss_pred HccCCCCcEEECCCCC-CCCCCh-HHhcCCCCCCEEECCCCcCCCCCHHHH-cCCCCCCEEEeeCCC-CCCCCH-HHhcc
Confidence 4457788888887753 433211 123457788888888877654333222 345788888887763 221000 01111
Q ss_pred cccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCC
Q 010910 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (497)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 293 (497)
.++|++|+++++. +...... ....+++|++|++++|.+.... ...+++|+.|+++++.+..- ...++
T Consensus 146 -l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~l------~~~~~ 212 (597)
T 3oja_B 146 -TPKLTTLSMSNNN-LERIEDD-TFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTL------AIPIA 212 (597)
T ss_dssp -CTTCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSEE------ECCTT
T ss_pred -CCCCCEEEeeCCc-CCCCChh-hhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCccccc------cCCch
Confidence 2678888887763 2221111 1235778888888877765542 24467888888877766542 23467
Q ss_pred CceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCc
Q 010910 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLT 373 (497)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 373 (497)
|+.|+++++. +.... ....++|+.|++++|. +++. .. ...+++|+.|+++++ .+....... ...+++|+
T Consensus 213 L~~L~ls~n~-l~~~~----~~~~~~L~~L~L~~n~-l~~~--~~-l~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~ 281 (597)
T 3oja_B 213 VEELDASHNS-INVVR----GPVNVELTILKLQHNN-LTDT--AW-LLNYPGLVEVDLSYN-ELEKIMYHP-FVKMQRLE 281 (597)
T ss_dssp CSEEECCSSC-CCEEE----CSCCSCCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSS-CCCEEESGG-GTTCSSCC
T ss_pred hheeeccCCc-ccccc----cccCCCCCEEECCCCC-CCCC--hh-hccCCCCCEEECCCC-ccCCCCHHH-hcCccCCC
Confidence 8888887653 22110 0113679999998876 4432 22 345899999999985 344332222 23478999
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeE
Q 010910 374 ELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTEL 453 (497)
Q Consensus 374 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 453 (497)
.|++++ +.++... .....+++|+.|+++++ .++. ++.....+++|+.|++++|. ++... ...+++|+.|
T Consensus 282 ~L~Ls~-N~l~~l~--~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L 350 (597)
T 3oja_B 282 RLYISN-NRLVALN--LYGQPIPTLKVLDLSHN-HLLH--VERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNL 350 (597)
T ss_dssp EEECTT-SCCCEEE--CSSSCCTTCCEEECCSS-CCCC--CGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEE
T ss_pred EEECCC-CCCCCCC--cccccCCCCcEEECCCC-CCCc--cCcccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEE
Confidence 999998 5555421 12234789999999986 4442 22222458899999999986 55332 3578899999
Q ss_pred eecccccccchhHH
Q 010910 454 SLRFCDRYGKFFSP 467 (497)
Q Consensus 454 ~l~~~~~l~~~~~~ 467 (497)
++++| .++.+...
T Consensus 351 ~l~~N-~~~~~~~~ 363 (597)
T 3oja_B 351 TLSHN-DWDCNSLR 363 (597)
T ss_dssp ECCSS-CEEHHHHH
T ss_pred EeeCC-CCCChhHH
Confidence 99998 45544433
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=2.4e-18 Score=172.89 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=54.5
Q ss_pred hCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhC
Q 010910 368 FCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHC 447 (497)
Q Consensus 368 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 447 (497)
.+++|++|++++| .+.... ......+++|+.|++++| .+++..++.....+++|+.|++++|. ++......+ ..+
T Consensus 419 ~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l 493 (570)
T 2z63_A 419 SLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSL 493 (570)
T ss_dssp TCTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTC
T ss_pred cCCCCCEEeCcCC-cccccc-hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhh-hcc
Confidence 3566666666663 332211 111234667777777765 33222222223356777777777764 443222222 467
Q ss_pred CCCCeEeecccccccc---hhHHhhhhhccccc
Q 010910 448 NSLTELSLRFCDRYGK---FFSPQLHSYSHFHL 477 (497)
Q Consensus 448 ~~L~~L~l~~~~~l~~---~~~~~l~~l~~~~~ 477 (497)
++|++|++++| +++. ..+..+.++..+.+
T Consensus 494 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 494 SSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEe
Confidence 77777777777 4433 33455555666555
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=155.95 Aligned_cols=128 Identities=16% Similarity=0.068 Sum_probs=89.2
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
++|+.|+++++. +.... ...+..+++|++|++++|.+.......+. .+++|++|+++++. +.... .. ..++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~lp--~~---~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELW-TSDILSLSKLRILIISHNRIQYLDISVFK-FNQELEYLDLSHNK-LVKIS--CH---PTVN 91 (520)
T ss_dssp TTCSEEECCSSC-CCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEECCSSC-CCEEE--CC---CCCC
T ss_pred ccccEEECCCCc-ccccC-hhhccccccccEEecCCCccCCcChHHhh-cccCCCEEecCCCc-eeecC--cc---ccCC
Confidence 799999999864 54332 23346799999999999997665444443 56899999999884 33211 11 2389
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCC--cEEEeecCCC
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL--RVLKLQCINV 279 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 279 (497)
|++|+++++.. ....+......+++|++|+++++.+.... +..+++| ++|+++++.+
T Consensus 92 L~~L~L~~N~l-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 92 LKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSEEECCSSCC-SSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECTT
T ss_pred ccEEeccCCcc-ccccchhhhccCCcceEEEecCcccchhh----ccccccceeeEEEeecccc
Confidence 99999999753 22111122357899999999999887643 3456777 9999877665
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.61 E-value=2e-17 Score=162.12 Aligned_cols=300 Identities=20% Similarity=0.119 Sum_probs=194.9
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
++++.|+++++. ++... ...+..+++|++|+++++.+.......+. .+++|++|+++++. +..... ..+.. .++
T Consensus 32 ~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~-~~~~~-l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLN-QDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNR-LKLIPL-GVFTG-LSN 105 (477)
T ss_dssp TTCSEEECCSSC-CCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CCSCCT-TSSTT-CTT
T ss_pred CCCcEEECCCCc-cceEC-HhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCc-CCccCc-ccccC-CCC
Confidence 689999999853 54432 12345789999999999987654444443 56899999999874 221110 01112 279
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCcee
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 297 (497)
|++|+++++.. ..... .....+++|++|+++++.+...... .+..+++|++|+++++.+....... ...+++|+.|
T Consensus 106 L~~L~Ls~n~i-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 181 (477)
T 2id5_A 106 LTKLDISENKI-VILLD-YMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSIPTEA-LSHLHGLIVL 181 (477)
T ss_dssp CCEEECTTSCC-CEECT-TTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSCCHHH-HTTCTTCCEE
T ss_pred CCEEECCCCcc-ccCCh-hHccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcccChhH-hcccCCCcEE
Confidence 99999998642 22111 1224789999999999876543322 2346899999999988876543333 3468999999
Q ss_pred ecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEec
Q 010910 298 ALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELAL 377 (497)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 377 (497)
++.++. +.... ......+++|+.|+++++....... .... ...+|++|+++++ .++..... ....+++|++|++
T Consensus 182 ~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L 255 (477)
T 2id5_A 182 RLRHLN-INAIR-DYSFKRLYRLKVLEISHWPYLDTMT-PNCL-YGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNL 255 (477)
T ss_dssp EEESCC-CCEEC-TTCSCSCTTCCEEEEECCTTCCEEC-TTTT-TTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEEC
T ss_pred eCCCCc-CcEeC-hhhcccCcccceeeCCCCccccccC-cccc-cCccccEEECcCC-cccccCHH-HhcCccccCeeEC
Confidence 998753 22111 1122347899999999876433211 1112 2458999999985 45443322 3355799999999
Q ss_pred CCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecc
Q 010910 378 LYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRF 457 (497)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 457 (497)
++ +.++...... ...+++|+.|+++++ .++......+ ..+++|+.|++++|. ++..... ....+++|+.|++++
T Consensus 256 s~-n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 256 SY-NPISTIEGSM-LHELLRLQEIQLVGG-QLAVVEPYAF-RGLNYLRVLNVSGNQ-LTTLEES-VFHSVGNLETLILDS 329 (477)
T ss_dssp CS-SCCCEECTTS-CTTCTTCCEEECCSS-CCSEECTTTB-TTCTTCCEEECCSSC-CSCCCGG-GBSCGGGCCEEECCS
T ss_pred CC-CcCCccChhh-ccccccCCEEECCCC-ccceECHHHh-cCcccCCEEECCCCc-CceeCHh-HcCCCcccCEEEccC
Confidence 98 5565432222 245799999999986 4543222222 358999999999985 5542222 224688999999999
Q ss_pred cc
Q 010910 458 CD 459 (497)
Q Consensus 458 ~~ 459 (497)
++
T Consensus 330 N~ 331 (477)
T 2id5_A 330 NP 331 (477)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.61 E-value=7.8e-18 Score=165.05 Aligned_cols=278 Identities=18% Similarity=0.144 Sum_probs=181.0
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCC--HHHHHHHHh
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT--DTGLVDLAH 212 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~ 212 (497)
..+++|+.|+++++. +.... ...+..+++|++|+++++.+.......+ ..+++|++|+++++.... +..+ .
T Consensus 53 ~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~----~ 125 (477)
T 2id5_A 53 ASFPHLEELELNENI-VSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISENKIVILLDYMF----Q 125 (477)
T ss_dssp TTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSS-TTCTTCCEEECTTSCCCEECTTTT----T
T ss_pred cCCCCCCEEECCCCc-cCEeC-hhhhhCCccCCEEECCCCcCCccCcccc-cCCCCCCEEECCCCccccCChhHc----c
Confidence 457999999999853 44322 2224578999999999998654332222 356899999999874211 1112 2
Q ss_pred hcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCC
Q 010910 213 GCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292 (497)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~ 292 (497)
.+ ++|++|+++++. +...... ....+++|++|+++++.+..... ..+..+++|+.|++..+.+...... ....++
T Consensus 126 ~l-~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~ 200 (477)
T 2id5_A 126 DL-YNLKSLEVGDND-LVYISHR-AFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDY-SFKRLY 200 (477)
T ss_dssp TC-TTCCEEEECCTT-CCEECTT-SSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTT-CSCSCT
T ss_pred cc-ccCCEEECCCCc-cceeChh-hccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChh-hcccCc
Confidence 22 799999999864 2221111 12468899999999988765443 3346789999999988877543211 123578
Q ss_pred CCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCC
Q 010910 293 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNL 372 (497)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 372 (497)
+|+.|+++++....... .... ...+|+.|+++++. ++......+ ..+++|+.|+++++. +...... ....+++|
T Consensus 201 ~L~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L 274 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMT-PNCL-YGLNLTSLSITHCN-LTAVPYLAV-RHLVYLRFLNLSYNP-ISTIEGS-MLHELLRL 274 (477)
T ss_dssp TCCEEEEECCTTCCEEC-TTTT-TTCCCSEEEEESSC-CCSCCHHHH-TTCTTCCEEECCSSC-CCEECTT-SCTTCTTC
T ss_pred ccceeeCCCCccccccC-cccc-cCccccEEECcCCc-ccccCHHHh-cCccccCeeECCCCc-CCccChh-hccccccC
Confidence 99999998764332111 0111 13589999999975 554333333 459999999999853 4433221 22447999
Q ss_pred cEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccc
Q 010910 373 TELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYK 434 (497)
Q Consensus 373 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 434 (497)
++|++++ +.++...... ...+++|+.|+++++ .++.... .....+++|+.|++++|+-
T Consensus 275 ~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 275 QEIQLVG-GQLAVVEPYA-FRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CEEECCS-SCCSEECTTT-BTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSCE
T ss_pred CEEECCC-CccceECHHH-hcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCCc
Confidence 9999998 5665532222 245899999999986 4443221 1224578999999999873
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.1e-16 Score=158.97 Aligned_cols=303 Identities=13% Similarity=0.087 Sum_probs=190.3
Q ss_pred CCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhccc
Q 010910 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (497)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 216 (497)
+++++.+++.++. +.... ..++..+++|++|+++++.+.......+. .+++|++|+++++. +..... ..+.. .+
T Consensus 50 l~~l~~l~l~~~~-l~~lp-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~-~~~~~-l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA-IRYLPP-HVFQN-VP 123 (597)
T ss_dssp GCCCSEEEESSCE-ESEEC-THHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CCCCCT-TTTTT-CT
T ss_pred CCCceEEEeeCCC-CCCcC-HHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCc-CCCCCH-HHHcC-CC
Confidence 4788888888742 33322 33456788999999998886654333333 56889999998874 221110 01112 27
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCce
Q 010910 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (497)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (497)
+|++|+++++. +.... ..+...+++|++|++++|.+..... ..+..+++|+.|+++++.+.... ...+++|+.
T Consensus 124 ~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 124 LLTVLVLERND-LSSLP-RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 196 (597)
T ss_dssp TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred CCCEEEeeCCC-CCCCC-HHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence 89999998864 22211 1122467889999998887654322 22355788999999888776532 234688888
Q ss_pred eecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEe
Q 010910 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 376 (497)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 376 (497)
|+++++. +.. ....++|+.|+++++. ++... ....++|+.|+++++. ++.. .....+++|+.|+
T Consensus 197 L~l~~n~-l~~------l~~~~~L~~L~ls~n~-l~~~~----~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~ 260 (597)
T 3oja_B 197 ANVSYNL-LST------LAIPIAVEELDASHNS-INVVR----GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVD 260 (597)
T ss_dssp EECCSSC-CSE------EECCTTCSEEECCSSC-CCEEE----CSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEE
T ss_pred hhcccCc-ccc------ccCCchhheeeccCCc-ccccc----cccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEE
Confidence 8887652 221 1225678888888865 33211 1124689999998854 4332 2234478999999
Q ss_pred cCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeec
Q 010910 377 LLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLR 456 (497)
Q Consensus 377 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 456 (497)
+++ +.++...... ...+++|+.|+++++ .++. ++.....+|+|+.|++++|. ++. +......+++|+.|+++
T Consensus 261 Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~--i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 261 LSY-NELEKIMYHP-FVKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLD 332 (597)
T ss_dssp CCS-SCCCEEESGG-GTTCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECC
T ss_pred CCC-CccCCCCHHH-hcCccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCC-CCc--cCcccccCCCCCEEECC
Confidence 988 4565432222 235788999999885 4443 22222357889999999886 552 22222467889999999
Q ss_pred ccccccchhHHhhhhhccccc
Q 010910 457 FCDRYGKFFSPQLHSYSHFHL 477 (497)
Q Consensus 457 ~~~~l~~~~~~~l~~l~~~~~ 477 (497)
+| .++...+..+..+..+.+
T Consensus 333 ~N-~l~~~~~~~~~~L~~L~l 352 (597)
T 3oja_B 333 HN-SIVTLKLSTHHTLKNLTL 352 (597)
T ss_dssp SS-CCCCCCCCTTCCCSEEEC
T ss_pred CC-CCCCcChhhcCCCCEEEe
Confidence 88 566666666777777766
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=6.9e-17 Score=166.42 Aligned_cols=297 Identities=13% Similarity=0.083 Sum_probs=154.4
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcc-cCc-HhHHHHHh------hCCCCceEeccCCCCCCHHHH
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY-VGD-QGLAAVGK------VCNQLEDLNLRFCEGLTDTGL 207 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~ 207 (497)
.+++|+.|+++++. +... +...+..+++|++|++++|. +.. .....+.. .+++|++|+++++. +.. +
T Consensus 489 ~L~~L~~L~Ls~N~-l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~--i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCP-NMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEE--F 563 (876)
T ss_dssp GCTTCCEEEEESCT-TCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCB--C
T ss_pred cCCCCCEEECcCCC-CCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCc--c
Confidence 57889999998764 2221 12334578899999999987 665 33333332 34589999998874 221 1
Q ss_pred HH--HHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCC-CcEEEeecCCCChHHH
Q 010910 208 VD--LAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL-LRVLKLQCINVTDEAL 284 (497)
Q Consensus 208 ~~--l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~l 284 (497)
.. .+... ++|+.|+++++. +...+ ....+++|++|++++|.+. .+...+..+++ |+.|+++++.+.. +
T Consensus 564 p~~~~l~~L-~~L~~L~Ls~N~-l~~lp---~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~--l 634 (876)
T 4ecn_A 564 PASASLQKM-VKLGLLDCVHNK-VRHLE---AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKY--I 634 (876)
T ss_dssp CCHHHHTTC-TTCCEEECTTSC-CCBCC---CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCS--C
T ss_pred CChhhhhcC-CCCCEEECCCCC-cccch---hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCc--C
Confidence 11 12222 788999988864 22211 2346778888888887765 22222445677 8888887776652 1
Q ss_pred HHHHhc--CCCCceeecccccCCCHHHHHHHh-----ccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCC
Q 010910 285 VAVGNQ--CLSLELLALYSFQQFTDKGLHAVG-----KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNI 357 (497)
Q Consensus 285 ~~l~~~--~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 357 (497)
...... .++|+.|+++++. +... +..+. -..++|+.|++++|. ++.. ...+...+++|+.|+++++ .+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~-l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~l-p~~~~~~l~~L~~L~Ls~N-~L 709 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNK-IGSE-GRNISCSMDDYKGINASTVTLSYNE-IQKF-PTELFATGSPISTIILSNN-LM 709 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSC-TTTT-SSSCSSCTTTCCCCCEEEEECCSSC-CCSC-CHHHHHTTCCCSEEECCSC-CC
T ss_pred chhhhccccCCCCEEECcCCc-CCCc-cccchhhhccccCCCcCEEEccCCc-CCcc-CHHHHccCCCCCEEECCCC-cC
Confidence 111111 1347777776642 2110 00000 012367777777654 3321 1223334667777777664 23
Q ss_pred ChhHHHHH------HhhCCCCcEEecCCCCCCChHHHHHHH--hcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEec
Q 010910 358 GTMGLESI------GKFCRNLTELALLYCQRIGNLALLEVG--RGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHI 429 (497)
Q Consensus 358 ~~~~~~~l------~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 429 (497)
+......+ ...+++|++|++++ +.++.. .... ..+++|+.|+++++ .++. ++.....+++|+.|++
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~l--p~~l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSL--SDDFRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCS-SCCCCC--CGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEEC
T ss_pred CccChHHhccccccccccCCccEEECCC-CCCccc--hHHhhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEEC
Confidence 21110000 01123677777766 344421 1111 24566777777664 3332 2222234666666666
Q ss_pred cccc-----ccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 430 RRCY-----KIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 430 ~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
++|. .+... +.....++++|+.|++++|
T Consensus 784 s~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 784 RHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSS
T ss_pred CCCCCccccccccc-ChHHHhcCCCCCEEECCCC
Confidence 5522 12111 1112235666666666666
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=1.6e-17 Score=168.05 Aligned_cols=299 Identities=13% Similarity=0.084 Sum_probs=146.3
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcc-cCc-HhHHHHHh-----hCCCCceEeccCCCCCCHHHHH
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY-VGD-QGLAAVGK-----VCNQLEDLNLRFCEGLTDTGLV 208 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~ 208 (497)
.+++|+.|+++++. +... +...+.++++|++|++++|. +.. .....+.. .+++|++|+++++. +.. +.
T Consensus 247 ~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~--ip 321 (636)
T 4eco_A 247 NLKDLTDVEVYNCP-NLTK-LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKT--FP 321 (636)
T ss_dssp GCTTCCEEEEECCT-TCSS-CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSS--CC
T ss_pred ccCCCCEEEecCCc-CCcc-ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCc--cC
Confidence 57889999998764 2221 12334568899999999887 765 44444443 24789999988874 221 11
Q ss_pred H--HHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCC-CcEEEeecCCCChHHHH
Q 010910 209 D--LAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL-LRVLKLQCINVTDEALV 285 (497)
Q Consensus 209 ~--l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~l~ 285 (497)
. .+..+ ++|+.|+++++....... ....+++|++|++++|.+. .+...+..+++ |++|+++++.+.. +.
T Consensus 322 ~~~~l~~l-~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~--lp 393 (636)
T 4eco_A 322 VETSLQKM-KKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKY--IP 393 (636)
T ss_dssp CHHHHTTC-TTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSS--CC
T ss_pred chhhhccC-CCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcc--cc
Confidence 1 12222 688888888764221211 2235667777777776554 12222344566 7777777666552 11
Q ss_pred HHHh--cCCCCceeecccccCCCHHHHHHHh------ccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCC
Q 010910 286 AVGN--QCLSLELLALYSFQQFTDKGLHAVG------KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNI 357 (497)
Q Consensus 286 ~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 357 (497)
.... .+++|+.|+++++. +.......+. -.+++|+.|+++++. ++.. ...+...+++|+.|+++++. +
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~l-p~~~~~~l~~L~~L~Ls~N~-l 469 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF-PKELFSTGSPLSSINLMGNM-L 469 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSC-CTHHHHTTCCCSEEECCSSC-C
T ss_pred hhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCCc-cCcC-CHHHHccCCCCCEEECCCCC-C
Confidence 1111 12356677766542 2111000000 023466666666654 3311 11223346666666666532 3
Q ss_pred ChhHHHHHHh-------hCCCCcEEecCCCCCCChHHHHHHH-hcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEec
Q 010910 358 GTMGLESIGK-------FCRNLTELALLYCQRIGNLALLEVG-RGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHI 429 (497)
Q Consensus 358 ~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 429 (497)
+.... .... .+++|++|++++ +.++... ..+. ..+++|+.|+++++ .++. ++.....+++|+.|++
T Consensus 470 ~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 470 TEIPK-NSLKDENENFKNTYLLTSIDLRF-NKLTKLS-DDFRATTLPYLVGIDLSYN-SFSK--FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SBCCS-SSSEETTEECTTGGGCCEEECCS-SCCCBCC-GGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCSSCCEEEC
T ss_pred CCcCH-HHhccccccccccCCccEEECcC-CcCCccC-hhhhhccCCCcCEEECCCC-CCCC--cChhhhcCCCCCEEEC
Confidence 21100 0000 112666666666 3444211 1111 14566666666654 3332 2222234566666666
Q ss_pred cccc-----ccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 430 RRCY-----KIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 430 ~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
++|. .+... +......+++|++|++++|
T Consensus 544 s~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 544 RNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSS
T ss_pred CCCcccccCccccc-ChHHHhcCCCCCEEECCCC
Confidence 4321 11111 1111234566666666666
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=9.1e-16 Score=148.42 Aligned_cols=276 Identities=17% Similarity=0.096 Sum_probs=141.1
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcc
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 215 (497)
.+++|+.|+++++. ++... +..+++|++|++++|.+.... ...+++|++|+++++. +.... ... .
T Consensus 62 ~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~-l~~l~----~~~-l 126 (457)
T 3bz5_A 62 KLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNK-LTKLD----VSQ-N 126 (457)
T ss_dssp GCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSC-CSCCC----CTT-C
T ss_pred ccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCc-CCeec----CCC-C
Confidence 35666666666542 33321 234566666666666554421 2244566666666553 22111 111 2
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++|++|+++++. +.... ...+++|++|++++|...... -+..+++|+.|+++++.+..-. ...+++|+
T Consensus 127 ~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~ 194 (457)
T 3bz5_A 127 PLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD----VSQNKLLN 194 (457)
T ss_dssp TTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC----CTTCTTCC
T ss_pred CcCCEEECCCCc-cceec----cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec----cccCCCCC
Confidence 566666666643 22111 235566666666665221111 1234566777777666555421 23456677
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (497)
.|+++++. ++... ...+++|+.|+++++. ++.. . ...+++|+.|+++++ .++... ...+++|+.|
T Consensus 195 ~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~-l~~i--p--~~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~L 259 (457)
T 3bz5_A 195 RLNCDTNN-ITKLD----LNQNIQLTFLDCSSNK-LTEI--D--VTPLTQLTYFDCSVN-PLTELD----VSTLSKLTTL 259 (457)
T ss_dssp EEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCC--C--CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCEE
T ss_pred EEECcCCc-CCeec----cccCCCCCEEECcCCc-cccc--C--ccccCCCCEEEeeCC-cCCCcC----HHHCCCCCEE
Confidence 77776542 22211 2336677777777764 3331 1 334677777777764 333322 1224444444
Q ss_pred ec----------CCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHH-----HHH-HHHcCCCCcEEecccccccCHHH
Q 010910 376 AL----------LYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDA-----ICS-IAEGCQNLKKLHIRRCYKIGNNG 439 (497)
Q Consensus 376 ~l----------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~~~~~ 439 (497)
++ ++|....... ...+++|+.|++++|....... +.. -...+++|+.|++++|. ++..
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l- 333 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTEL- 333 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCC-
T ss_pred eccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-cccc-
Confidence 33 3322222111 1246788888887764322110 000 01346788888888875 5542
Q ss_pred HHHHHhhCCCCCeEeecccccccc
Q 010910 440 IVAVGEHCNSLTELSLRFCDRYGK 463 (497)
Q Consensus 440 ~~~~~~~~~~L~~L~l~~~~~l~~ 463 (497)
. ..+|++|+.|+++++ ++++
T Consensus 334 --~-l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 334 --D-VSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp --C-CTTCTTCSEEECCSS-CCCB
T ss_pred --c-cccCCcCcEEECCCC-CCCC
Confidence 1 357889999999888 5654
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.57 E-value=4.8e-17 Score=164.55 Aligned_cols=281 Identities=18% Similarity=0.033 Sum_probs=174.5
Q ss_pred HHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHh
Q 010910 160 AQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGS 239 (497)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 239 (497)
+..+++|++|+++++.+.... .+ ..+++|++|++.++.. ... ..+ . .++|+.|+++++...... ...
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~--~l-~~~~~L~~L~l~~n~l-~~l--p~~--~-l~~L~~L~l~~n~~~~~~----~~~ 347 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE--DV-PKHFKWQSLSIIRCQL-KQF--PTL--D-LPFLKSLTLTMNKGSISF----KKV 347 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC--CC-CTTCCCSEEEEESCCC-SSC--CCC--C-CSSCCEEEEESCSSCEEC----CCC
T ss_pred cccCCCCCEEEecCccchhhh--hc-cccccCCEEEcccccC-ccc--ccC--C-CCccceeeccCCcCccch----hhc
Confidence 344567777777777653322 22 2456788888887743 211 111 2 278888888876433322 123
Q ss_pred cCCCCcEEEccCCCCChhH-HHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCc
Q 010910 240 HCKSLETLSLDSEFIHNKG-VHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCK 318 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 318 (497)
.+++|++|+++++.+.... .......+++|++|+++++.+.... .....+++|+.|+++++.-... ........++
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~ 424 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRV-TEFSAFLSLE 424 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEEST-TTTTTTTTCT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCc-cChhhhhccc
Confidence 6788999999888765432 1233456889999999877654321 2223478999999987632111 1111233578
Q ss_pred ccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCC
Q 010910 319 KLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSL 398 (497)
Q Consensus 319 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 398 (497)
+|+.|++++|. +..... .....+++|++|+++++. +...........+++|++|++++| .++...... ...+++|
T Consensus 425 ~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L 499 (606)
T 3vq2_A 425 KLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGV-FDTLHRL 499 (606)
T ss_dssp TCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTTC
T ss_pred cCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccChhh-hcccccC
Confidence 99999999876 332211 223458999999999853 433222333345799999999994 665432222 3458999
Q ss_pred cEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCC-CCCeEeecccccccchhH
Q 010910 399 QALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN-SLTELSLRFCDRYGKFFS 466 (497)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~ 466 (497)
+.|+++++ .+++... .....+++|+.|++++|. ++. +......++ +|++|++++|+-..+...
T Consensus 500 ~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~--~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 500 QLLNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFNR-IET--SKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEEECCSS-CCSCEEG-GGTTTCTTCCEEECTTSC-CCC--EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CEEECCCC-cCCCcCH-HHccCCCcCCEEECCCCc-Ccc--cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999997 4544322 223468999999999996 653 222245676 599999999853333333
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=5.9e-16 Score=154.80 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=59.9
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhc
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 214 (497)
..+++|++|+++++. ++... ...+..+++|++|++++|.+..-... .+++|++|+++++. +....+...+...
T Consensus 73 ~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~-l~~l~~p~~~~~l 145 (562)
T 3a79_B 73 SFLSELRVLRLSHNR-IRSLD-FHVFLFNQDLEYLDVSHNRLQNISCC----PMASLRHLDLSFND-FDVLPVCKEFGNL 145 (562)
T ss_dssp TTCTTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECTTSCCCEECSC----CCTTCSEEECCSSC-CSBCCCCGGGGGC
T ss_pred ccCCCccEEECCCCC-CCcCC-HHHhCCCCCCCEEECCCCcCCccCcc----ccccCCEEECCCCC-ccccCchHhhccc
Confidence 346788888887753 44321 12234577888888888876532111 45788888888774 2211110111222
Q ss_pred ccCccEEecCCCCCCChHHHHHHHhcCCCC--cEEEccCCCC
Q 010910 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSL--ETLSLDSEFI 254 (497)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 254 (497)
++|++|+++++. +....+ ..+++| ++|+++++.+
T Consensus 146 -~~L~~L~L~~n~-l~~~~~----~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 146 -TKLTFLGLSAAK-FRQLDL----LPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp -TTCCEEEEECSB-CCTTTT----GGGTTSCEEEEEEEESSC
T ss_pred -CcccEEecCCCc-cccCch----hhhhhceeeEEEeecccc
Confidence 678888888753 332221 234555 7777776654
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=3.8e-17 Score=164.11 Aligned_cols=113 Identities=26% Similarity=0.240 Sum_probs=74.6
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCC--CHHHHHHHHh
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL--TDTGLVDLAH 212 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~ 212 (497)
..+++|++|+++++. ++... ...+..+++|++|+++++.+.......+. .+++|++|+++++... ....+ .
T Consensus 49 ~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~----~ 121 (570)
T 2z63_A 49 FSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPI----G 121 (570)
T ss_dssp TTCSSCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCSC----T
T ss_pred hCCCCceEEECCCCc-CCccC-cccccCchhCCEEeCcCCcCCccCHhhhc-CccccccccccccccccCCCccc----c
Confidence 457999999999863 44322 22345789999999999987654333343 5689999999987421 11112 2
Q ss_pred hcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCCh
Q 010910 213 GCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHN 256 (497)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (497)
. .++|++|+++++.. ....+......+++|++|+++++.+..
T Consensus 122 ~-l~~L~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 122 H-LKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp T-CTTCCEEECCSSCC-CCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred c-cccccEEecCCCcc-ceecChhhhcccCCCCEEeCcCCccce
Confidence 2 27999999998742 211111223578999999999887653
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=4.4e-16 Score=159.70 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=22.1
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcc
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY 175 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 175 (497)
..+++|+.|+++++. +.... ...+..+++|++|+++++.
T Consensus 269 ~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNN-IQHLF-SHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp TTCTTCCEEECCSCC-BSEEC-TTTTTTCTTCCEEECTTCB
T ss_pred cCcccccEeeCCCCc-cCccC-hhhhcCCCCccEEeccchh
Confidence 346788888887643 33221 1123456677777776543
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=7.8e-16 Score=157.81 Aligned_cols=136 Identities=22% Similarity=0.250 Sum_probs=75.2
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCC--CCHHHHHHHHh
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG--LTDTGLVDLAH 212 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~l~~ 212 (497)
..+++|++|+++++. +.... ...+..+++|++|+++++.+.......+ ..+++|++|+++++.. +.+..+.
T Consensus 46 ~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~---- 118 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNT-ISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSNSIQKIKNNPFV---- 118 (680)
T ss_dssp GGGTTCSEEECCSSC-CCCCC-TTHHHHCTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCSCTTT----
T ss_pred hCCCcCcEEECCCCc-cCccC-HHHHhcccCcCEEECCCCccCccChhhh-ccCCCCCEEECCCCccCccChhHcc----
Confidence 346788888887643 33221 2234467888888888777553322223 2457888888877631 1111121
Q ss_pred hcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHH-hcCCCCcEEEeecCCCC
Q 010910 213 GCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVA-QGCPLLRVLKLQCINVT 280 (497)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~ 280 (497)
. .++|++|+++++.. ...... ....+++|++|+++++.+.......+. ..+++|++|+++++.+.
T Consensus 119 ~-l~~L~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 119 K-QKNLITLDLSHNGL-SSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp T-CTTCCEEECCSSCC-SCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred c-cCCCCEEECCCCcc-cccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 1 26788888877532 111111 113567788888877766544333321 23567777777666554
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.52 E-value=2.1e-15 Score=150.75 Aligned_cols=128 Identities=18% Similarity=0.120 Sum_probs=86.7
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
++++.|+++++. ++... ...+..+++|++|++++|.+.......+. .+++|++|+++++. +...... ..++
T Consensus 52 ~~L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~lp~~-----~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNR-LQNISCC-----PMAS 122 (562)
T ss_dssp TTCCEEECCSSC-CCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSC-CCEECSC-----CCTT
T ss_pred CCcCEEECCCCC-ccccC-hhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCc-CCccCcc-----cccc
Confidence 799999999863 44322 12335789999999999987654443343 56899999999875 3221101 2389
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCC--cEEEeecCCC
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL--RVLKLQCINV 279 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 279 (497)
|++|+++++. +...........+++|++|+++++.+....+ ..+++| +.|+++++.+
T Consensus 123 L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 123 LRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCEEEEEEEESSC
T ss_pred CCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCch----hhhhhceeeEEEeecccc
Confidence 9999999975 3322211223578999999999988876433 334555 8998877655
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.51 E-value=5.8e-15 Score=142.81 Aligned_cols=291 Identities=16% Similarity=0.072 Sum_probs=193.9
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcc
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 215 (497)
.+++|+.|+++++. ++... -+..+++|++|+++++.+.... ...+++|++|+++++. +.... +.. .
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~~---~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~----~~~-l 105 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDMT---GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK-LTNLD----VTP-L 105 (457)
T ss_dssp HHTTCCEEECCSSC-CCCCT---TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCCC----CTT-C
T ss_pred HcCCCCEEEccCCC-cccCh---hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC-Cceee----cCC-C
Confidence 36899999999863 54432 2457899999999999876642 3356899999999885 33222 222 3
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCC-CChHHHHHHHhcCCCC
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSL 294 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~l~~~~~~L 294 (497)
++|++|+++++. +.... ...+++|++|++++|.+.... +..+++|++|+++.+. +.... ...+++|
T Consensus 106 ~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L 172 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQL 172 (457)
T ss_dssp TTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTC
T ss_pred CcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc----cccCCcC
Confidence 899999999874 33222 357899999999998877642 4568999999998773 33221 2357899
Q ss_pred ceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcE
Q 010910 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (497)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (497)
++|+++++. ++.- . ...+++|+.|+++++. ++... ...+++|+.|+++++ .++... ...+++|+.
T Consensus 173 ~~L~ls~n~-l~~l--~--l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N-~l~~ip----~~~l~~L~~ 237 (457)
T 3bz5_A 173 TTLDCSFNK-ITEL--D--VSQNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSN-KLTEID----VTPLTQLTY 237 (457)
T ss_dssp CEEECCSSC-CCCC--C--CTTCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTCTTCSE
T ss_pred CEEECCCCc-ccee--c--cccCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCC-cccccC----ccccCCCCE
Confidence 999998763 3321 1 3457899999999876 44332 345899999999985 454422 345799999
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEe----------ccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHH-----
Q 010910 375 LALLYCQRIGNLALLEVGRGCKSLQALH----------LVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNG----- 439 (497)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~----------l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----- 439 (497)
|++++ +.++... ...+++|+.|. +++|....... ...+++|+.|++++|..++...
T Consensus 238 L~l~~-N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 238 FDCSV-NPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp EECCS-SCCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred EEeeC-CcCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCc
Confidence 99998 5666532 22356665554 44443222211 1357999999999986322100
Q ss_pred HHH-HHhhCCCCCeEeecccccccchhHHhhhhhcccccc
Q 010910 440 IVA-VGEHCNSLTELSLRFCDRYGKFFSPQLHSYSHFHLG 478 (497)
Q Consensus 440 ~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~~~~~ 478 (497)
+.. -..++++|++|++++| +++...+..+.++..+.++
T Consensus 309 L~~L~l~~~~~L~~L~L~~N-~l~~l~l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNT-ELTELDVSHNTKLKSLSCV 347 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTC-CCSCCCCTTCTTCSEEECC
T ss_pred ceEechhhcccCCEEECCCC-cccccccccCCcCcEEECC
Confidence 000 0246788899999888 6665556666666666653
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=7.3e-16 Score=142.17 Aligned_cols=251 Identities=16% Similarity=0.112 Sum_probs=133.2
Q ss_pred HHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHH
Q 010910 155 GLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSL 234 (497)
Q Consensus 155 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~ 234 (497)
....+...+++|++|+++++.+.......+. .+++|++|+++++....... ... .++|++|+++++. +...
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~----~~~-l~~L~~L~Ls~n~-l~~l-- 95 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD----LES-LSTLRTLDLNNNY-VQEL-- 95 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEEE----ETT-CTTCCEEECCSSE-EEEE--
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcchh----hhh-cCCCCEEECcCCc-cccc--
Confidence 3445566677899999999887665444554 56888888888774211111 111 2566666666642 1110
Q ss_pred HHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHh
Q 010910 235 EAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVG 314 (497)
Q Consensus 235 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 314 (497)
...++|++|++++|.+..... ..+++|++|+++++.+...... ..
T Consensus 96 ----~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~---------------------------~~ 140 (317)
T 3o53_A 96 ----LVGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDL---------------------------DE 140 (317)
T ss_dssp ----EECTTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGB---------------------------CT
T ss_pred ----cCCCCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccch---------------------------hh
Confidence 123566666666655443221 1245555555554444321100 01
Q ss_pred ccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhc
Q 010910 315 KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG 394 (497)
Q Consensus 315 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 394 (497)
..+++|+.|+++++. ++......+...+++|++|+++++. ++... .. ..+++|++|++++ +.++..... ...
T Consensus 141 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~-~~l~~L~~L~Ls~-N~l~~l~~~--~~~ 212 (317)
T 3o53_A 141 GCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVK--GQ-VVFAKLKTLDLSS-NKLAFMGPE--FQS 212 (317)
T ss_dssp GGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--CC-CCCTTCCEEECCS-SCCCEECGG--GGG
T ss_pred hccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Ccccc--cc-cccccCCEEECCC-CcCCcchhh--hcc
Confidence 124556666666553 3332233333345667777776643 32211 00 1256777777776 445432111 234
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccc
Q 010910 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRY 461 (497)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 461 (497)
+++|+.|+++++ .++. ++.....+++|+.|++++|+ ++...+......+++|+.|++.++..+
T Consensus 213 l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 213 AAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp GTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCcccEEECcCC-cccc--hhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhc
Confidence 677777777764 4432 22222346777778887775 554455555567777777777655433
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.47 E-value=1e-16 Score=167.71 Aligned_cols=137 Identities=19% Similarity=0.138 Sum_probs=57.9
Q ss_pred hCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHH-HHhhc
Q 010910 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVD-LAHGC 214 (497)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~ 214 (497)
.+++|+.|+++++....... ...+.++++|++|+|++|.+.......+. .+++|++|+++++.. ....... .+..
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l-~~~~~~~~~~~~- 121 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELRLYFCGL-SDAVLKDGYFRN- 121 (844)
T ss_dssp SCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEECTTCCC-SSCCSTTCCCSS-
T ss_pred ccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhHcc-CCcccCEeeCcCCCC-CcccccCccccc-
Confidence 34566666666542111100 11123456666666666654433222222 345666666665531 1100000 0111
Q ss_pred ccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCCh---hHHHHHHhcCCCCcEEEeecCCC
Q 010910 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHN---KGVHAVAQGCPLLRVLKLQCINV 279 (497)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~ 279 (497)
.++|++|+++++.. ...........+++|++|++++|.+.. ..+..+.. ++|+.|+++.+.+
T Consensus 122 L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l 186 (844)
T 3j0a_A 122 LKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSL 186 (844)
T ss_dssp CSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBS
T ss_pred cCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcc
Confidence 15566666665431 111111112355666666666554432 12222111 5566666655444
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.45 E-value=4.5e-16 Score=162.85 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=29.0
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
.+++.|+++++ .++..........+++|+.|++++|. ++..........+++|+.|++++|
T Consensus 401 ~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 401 LTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp TTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESC
T ss_pred cccceeecccC-ccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCC
Confidence 34455555443 33322222333356677777776664 332111111234566777777666
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=4e-14 Score=132.78 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=68.4
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHH--HHhc
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLE--VGRG 394 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~ 394 (497)
+++|+.|+++++. ++...... ...+++|++|+++++. +.... ..+...+++|++|++++ +.++...... ....
T Consensus 173 l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 173 LTFLEELEIDASD-LQSYEPKS-LKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRD-TDLDTFHFSELSTGET 247 (353)
T ss_dssp CCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEES-CBCTTCCCC------C
T ss_pred CCCCCEEECCCCC-cCccCHHH-HhccccCCeecCCCCc-cccch-hhhhhhcccccEEECCC-Cccccccccccccccc
Confidence 4555555555543 22211111 1235666666666633 32222 22233356677777766 3443321111 1123
Q ss_pred CCCCcEEeccCCCCCCHHHHHHH---HHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc
Q 010910 395 CKSLQALHLVDCSSIGDDAICSI---AEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459 (497)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (497)
.+.++.+.+.++ .+++..+..+ ...+++|+.|++++|. ++.... .+...+++|++|++++|+
T Consensus 248 ~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPD-GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCC-CCccCH-HHHhcCCCCCEEEeeCCC
Confidence 566777777664 5555543332 3457788888888774 552111 112467788888888874
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.44 E-value=1.2e-14 Score=135.08 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=61.8
Q ss_pred CCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHH-HHHHhcCCCCceeecccccCCCHHHHHHHhccCccc
Q 010910 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEAL-VAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 320 (497)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (497)
++|++|+++++.+..... ..+..+++|+.|+++++.+..... ......+++|++|+++++. +.. +.. ...++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--l~~--~~~~~L 194 (330)
T 1xku_A 121 KTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITT--IPQ--GLPPSL 194 (330)
T ss_dssp TTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCS--CCS--SCCTTC
T ss_pred ccccEEECCCCcccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-ccc--CCc--cccccC
Confidence 455566665555443322 222345556666665554432110 1111234555555554432 110 000 002455
Q ss_pred CeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcE
Q 010910 321 KNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQA 400 (497)
Q Consensus 321 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 400 (497)
+.|+++++. ++......+ ..+++|+.|+++++. ++...... ...+++|++|++++ +.++.. ......+++|+.
T Consensus 195 ~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~-N~l~~l--p~~l~~l~~L~~ 267 (330)
T 1xku_A 195 TELHLDGNK-ITKVDAASL-KGLNNLAKLGLSFNS-ISAVDNGS-LANTPHLRELHLNN-NKLVKV--PGGLADHKYIQV 267 (330)
T ss_dssp SEEECTTSC-CCEECTGGG-TTCTTCCEEECCSSC-CCEECTTT-GGGSTTCCEEECCS-SCCSSC--CTTTTTCSSCCE
T ss_pred CEEECCCCc-CCccCHHHh-cCCCCCCEEECCCCc-CceeChhh-ccCCCCCCEEECCC-CcCccC--ChhhccCCCcCE
Confidence 555555543 322211112 235556666665532 22211111 12245566666655 233311 111123455555
Q ss_pred EeccCC
Q 010910 401 LHLVDC 406 (497)
Q Consensus 401 L~l~~~ 406 (497)
|+++++
T Consensus 268 L~l~~N 273 (330)
T 1xku_A 268 VYLHNN 273 (330)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 555553
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=5.8e-15 Score=137.13 Aligned_cols=225 Identities=20% Similarity=0.145 Sum_probs=146.5
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
++++.|+++++. ++.... ..+..+++|++|+++++.+.......+. .+++|++|+++++. +.. +.....++
T Consensus 52 ~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~-----l~~~~~~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIKD-GDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQ-LKE-----LPEKMPKT 122 (330)
T ss_dssp TTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSC-CSB-----CCSSCCTT
T ss_pred CCCeEEECCCCc-CCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCc-CCc-----cChhhccc
Confidence 689999998853 443221 1235689999999999987654333343 56899999999874 221 11112268
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhH-HHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCce
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG-VHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (497)
|++|+++++. +...... ....+++|++|+++++.+...+ ....+..+++|++|+++++.+..-.. ...++|++
T Consensus 123 L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~L~~ 196 (330)
T 1xku_A 123 LQELRVHENE-ITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTE 196 (330)
T ss_dssp CCEEECCSSC-CCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS----SCCTTCSE
T ss_pred ccEEECCCCc-ccccCHh-HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc----cccccCCE
Confidence 9999999864 3322222 2357899999999998776422 22334668999999998877753110 12378999
Q ss_pred eecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEe
Q 010910 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 376 (497)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 376 (497)
|+++++. +..... .....+++|+.|+++++. ++......+ ..+++|++|+++++. ++. +......+++|++|+
T Consensus 197 L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 197 LHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDNGSL-ANTPHLRELHLNNNK-LVK--VPGGLADHKYIQVVY 269 (330)
T ss_dssp EECTTSC-CCEECT-GGGTTCTTCCEEECCSSC-CCEECTTTG-GGSTTCCEEECCSSC-CSS--CCTTTTTCSSCCEEE
T ss_pred EECCCCc-CCccCH-HHhcCCCCCCEEECCCCc-CceeChhhc-cCCCCCCEEECCCCc-Ccc--CChhhccCCCcCEEE
Confidence 9998763 332211 123357899999999875 443322223 358999999999864 432 111234579999999
Q ss_pred cCCCCCCCh
Q 010910 377 LLYCQRIGN 385 (497)
Q Consensus 377 l~~~~~~~~ 385 (497)
+++ +.++.
T Consensus 270 l~~-N~i~~ 277 (330)
T 1xku_A 270 LHN-NNISA 277 (330)
T ss_dssp CCS-SCCCC
T ss_pred CCC-CcCCc
Confidence 998 45554
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=5.4e-15 Score=136.31 Aligned_cols=248 Identities=16% Similarity=0.117 Sum_probs=152.3
Q ss_pred HHHHHhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHH
Q 010910 130 LNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVD 209 (497)
Q Consensus 130 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 209 (497)
+..+...+++|++|+++++. ++... ...+..+++|++|++++|.+..... ...+++|++|+++++. +....
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~-l~~l~--- 96 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNP-LSQIS-AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQELL--- 96 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSC-CCCCC-HHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSE-EEEEE---
T ss_pred HHHHhccCCCCCEEECcCCc-cCcCC-HHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCc-ccccc---
Confidence 34555667899999999863 55432 2344679999999999998654322 3466899999999874 22110
Q ss_pred HHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHh
Q 010910 210 LAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGN 289 (497)
Q Consensus 210 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~ 289 (497)
..++|++|+++++. +.... ...+++|++|++++|.+...... .+..+++|++|+++++.+.......+..
T Consensus 97 ----~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 97 ----VGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp ----ECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred ----CCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 12799999999864 33221 13578999999999887654321 2245788999999888776543333333
Q ss_pred cCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhC
Q 010910 290 QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFC 369 (497)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 369 (497)
.+++|++|+++++ . ++.. ... ..+++|++|+++++ .++..... ...+
T Consensus 167 ~l~~L~~L~L~~N--------------------------~-l~~~--~~~-~~l~~L~~L~Ls~N-~l~~l~~~--~~~l 213 (317)
T 3o53_A 167 SSDTLEHLNLQYN--------------------------F-IYDV--KGQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSA 213 (317)
T ss_dssp GTTTCCEEECTTS--------------------------C-CCEE--ECC-CCCTTCCEEECCSS-CCCEECGG--GGGG
T ss_pred ccCcCCEEECCCC--------------------------c-Cccc--ccc-cccccCCEEECCCC-cCCcchhh--hccc
Confidence 3455555555543 2 1111 000 12566667776663 33321111 2335
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 370 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
++|++|++++ +.++.. ......+++|+.|+++++ .+....+......+++|+.|++.++.
T Consensus 214 ~~L~~L~L~~-N~l~~l--~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 214 AGVTWISLRN-NKLVLI--EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TTCSEEECTT-SCCCEE--CTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcccEEECcC-Ccccch--hhHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCch
Confidence 7777777777 455431 111234678888888875 45534555566667788877777554
No 54
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.42 E-value=2e-13 Score=110.85 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=62.1
Q ss_pred CCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHc---CCCCcEEecccccccCHHHHHHHHhhC
Q 010910 371 NLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEG---CQNLKKLHIRRCYKIGNNGIVAVGEHC 447 (497)
Q Consensus 371 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~ 447 (497)
+|++|++++|. +++.++..+ ..|++|++|++++|..++|.++..+... +++|++|++++|+++|+.++..+. +|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 56666666654 666666555 3567777777777766777777666642 456777777777777777776664 57
Q ss_pred CCCCeEeecccccccchh
Q 010910 448 NSLTELSLRFCDRYGKFF 465 (497)
Q Consensus 448 ~~L~~L~l~~~~~l~~~~ 465 (497)
++|++|++++|+++++.+
T Consensus 139 ~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TTCCEEEEESCTTCCCHH
T ss_pred CCCCEEECCCCCCCCchH
Confidence 777777777777777755
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=5.1e-13 Score=133.19 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=26.3
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (497)
++|+.|+++++. ++... ..+++|++|++++|.+.... ..+++|++|+++++
T Consensus 61 ~~L~~L~L~~N~-l~~lp-----~~l~~L~~L~Ls~N~l~~lp-----~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 61 AHITTLVIPDNN-LTSLP-----ALPPELRTLEVSGNQLTSLP-----VLPPGLLELSIFSN 111 (622)
T ss_dssp TTCSEEEECSCC-CSCCC-----CCCTTCCEEEECSCCCSCCC-----CCCTTCCEEEECSC
T ss_pred CCCcEEEecCCC-CCCCC-----CcCCCCCEEEcCCCcCCcCC-----CCCCCCCEEECcCC
Confidence 566666666542 33211 13566666666666543211 13456666666655
No 56
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=4.3e-12 Score=118.84 Aligned_cols=198 Identities=19% Similarity=0.191 Sum_probs=138.6
Q ss_pred CCCCcEEEeecCCCChHHHHHHHh----cCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhh
Q 010910 266 CPLLRVLKLQCINVTDEALVAVGN----QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT 341 (497)
Q Consensus 266 ~~~L~~L~l~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 341 (497)
.++|+.|+++++.++......+.. ..++|++|+++++ .+++.+...+...+++|+.|++++|. +++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence 478999999999998876555443 2368999999886 57777777776667789999999875 78777666543
Q ss_pred ----cCCCCCEEeecCCCCCChhHHHHHH---hhCCCCcEEecCCCCCCChHHHHHHH---hcCCCCcEEeccCCCCCCH
Q 010910 342 ----GCKELTHLEINGCHNIGTMGLESIG---KFCRNLTELALLYCQRIGNLALLEVG---RGCKSLQALHLVDCSSIGD 411 (497)
Q Consensus 342 ----~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 411 (497)
..++|++|++++| .+++.+...+. ..+++|++|++++ +.+++.+...+. ...++|+.|++++| .+++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 3578999999985 57776655554 4468899999988 578887765544 34678999999885 7777
Q ss_pred HHHHHHHH---cCCCCcEEecccccccCHHHHHHHHhhCC-C---CCeEe--ecccccccchhHHhhh
Q 010910 412 DAICSIAE---GCQNLKKLHIRRCYKIGNNGIVAVGEHCN-S---LTELS--LRFCDRYGKFFSPQLH 470 (497)
Q Consensus 412 ~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~---L~~L~--l~~~~~l~~~~~~~l~ 470 (497)
.+...++. .+++|+.|++++|. +++.++..+..... . |+.+. +.++ .+++.....+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~~~~~~l~ 291 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSEYWSVILS 291 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEECCCC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCHHHHHHHH
Confidence 76665543 46889999999986 88888887764211 1 55665 4444 45544333333
No 57
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=6.2e-12 Score=117.73 Aligned_cols=193 Identities=20% Similarity=0.219 Sum_probs=142.5
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhc----CCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHh-
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQG----CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVG- 314 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~- 314 (497)
..++|++|+++++.+++.....+... .++|++|+++++.+++..+..+...+++|+.|+++++ .+++.+...+.
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 35789999999999988776655443 3689999999999999888887777789999999886 57776665553
Q ss_pred ---ccCcccCeeeccCCCCCChHHHHHHh---hcCCCCCEEeecCCCCCChhHHHHHH---hhCCCCcEEecCCCCCCCh
Q 010910 315 ---KGCKKLKNLTLSDCYFLSDMGLEAIA---TGCKELTHLEINGCHNIGTMGLESIG---KFCRNLTELALLYCQRIGN 385 (497)
Q Consensus 315 ---~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~ 385 (497)
...++|+.|++++|. +++.+...+. ...++|++|+|+++ .+++.+...+. ..+++|++|++++ +.+++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~-N~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAY-NGAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCS-SCCCH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCC-CCCCH
Confidence 236789999999985 7776655543 45789999999985 58777766554 3457999999999 68888
Q ss_pred HHHHHHHh---cCCCCcEEeccCCCCCCHHHHHHHHHcC-CC---CcEEe--cccccccCHH
Q 010910 386 LALLEVGR---GCKSLQALHLVDCSSIGDDAICSIAEGC-QN---LKKLH--IRRCYKIGNN 438 (497)
Q Consensus 386 ~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~---L~~L~--l~~~~~~~~~ 438 (497)
.+...+.. .+++|++|+++++ .+++.+...+.... +. |+.+. +..+. +++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~-~~~~ 285 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA-VSEY 285 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCc-cCHH
Confidence 77666544 4699999999985 78888888776532 12 66666 55553 4443
No 58
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.38 E-value=5.1e-13 Score=108.40 Aligned_cols=104 Identities=17% Similarity=0.313 Sum_probs=71.8
Q ss_pred CCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhc---CCCCcEEeccCCCCCCHHHHHHHHHcC
Q 010910 345 ELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG---CKSLQALHLVDCSSIGDDAICSIAEGC 421 (497)
Q Consensus 345 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~ 421 (497)
.|++|++++|. +++.++..+ ..|++|++|++++|..++|.++..+... +++|++|++++|..+++.++..+. .+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 46777777765 777776665 3567777777777777777777776652 457777777777777777777665 47
Q ss_pred CCCcEEecccccccCHHH--HHHHHhhCCCCC
Q 010910 422 QNLKKLHIRRCYKIGNNG--IVAVGEHCNSLT 451 (497)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~ 451 (497)
++|++|++++|+.+++.+ ...+.+.+|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 777777777777777654 445556677654
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.38 E-value=6.7e-15 Score=136.81 Aligned_cols=201 Identities=14% Similarity=0.089 Sum_probs=89.6
Q ss_pred CCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHH-HHHHhcCCCCceeecccccCCCHHHHHHHhccCccc
Q 010910 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEAL-VAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 320 (497)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 320 (497)
++|++|+++++.+..... ..+..+++|++|+++++.+..... ......+ +|++|+++++. ++. +.. ...++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~--l~~--~~~~~L 195 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTG--IPK--DLPETL 195 (332)
T ss_dssp TTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSS--CCS--SSCSSC
T ss_pred ccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCc--cCc--cccCCC
Confidence 456666666655442211 112445666666666555542111 0011111 56666665532 111 000 012466
Q ss_pred CeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcE
Q 010910 321 KNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQA 400 (497)
Q Consensus 321 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 400 (497)
+.|+++++. ++......+ ..+++|+.|+++++ .+....... ...+++|++|++++ +.++.. ......+++|+.
T Consensus 196 ~~L~l~~n~-i~~~~~~~l-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~l--p~~l~~l~~L~~ 268 (332)
T 2ft3_A 196 NELHLDHNK-IQAIELEDL-LRYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDN-NKLSRV--PAGLPDLKLLQV 268 (332)
T ss_dssp SCCBCCSSC-CCCCCTTSS-TTCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCS-SCCCBC--CTTGGGCTTCCE
T ss_pred CEEECCCCc-CCccCHHHh-cCCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCC-CcCeec--ChhhhcCccCCE
Confidence 667666653 322211112 23566777777663 232211111 12356777777766 344421 111234667777
Q ss_pred EeccCCCCCCHHHHHHHHH-----cCCCCcEEecccccccCHH-HHHHHHhhCCCCCeEeeccc
Q 010910 401 LHLVDCSSIGDDAICSIAE-----GCQNLKKLHIRRCYKIGNN-GIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 401 L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 458 (497)
|+++++ .++......+.. ..++|+.|++.+++ +... ........+++|+.|++++|
T Consensus 269 L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 269 VYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred EECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhcccc
Confidence 777664 343322211111 13556777777765 3311 11122245667777777665
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.38 E-value=1e-14 Score=135.57 Aligned_cols=272 Identities=15% Similarity=0.075 Sum_probs=167.7
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
++++.|+++++. +.... ...+..+++|++|+++++.+.......+. .+++|++|+++++. +.. +.....++
T Consensus 54 ~~l~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~-----l~~~~~~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNH-LVE-----IPPNLPSS 124 (332)
T ss_dssp TTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSC-CCS-----CCSSCCTT
T ss_pred CCCeEEECCCCc-CCccC-HhHhhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCc-CCc-----cCcccccc
Confidence 689999998853 44322 12245789999999999987654344443 56899999999874 221 11111268
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHH-HHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCce
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGV-HAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (497)
|++|+++++. +.... ......+++|++|+++++.+...+. ...+..+ +|+.|+++++.+..-.. ...++|++
T Consensus 125 L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~----~~~~~L~~ 197 (332)
T 2ft3_A 125 LVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK----DLPETLNE 197 (332)
T ss_dssp CCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS----SSCSSCSC
T ss_pred CCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc----cccCCCCE
Confidence 9999999864 22211 1123578999999999988764221 1122333 89999998777654110 11368999
Q ss_pred eecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEe
Q 010910 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 376 (497)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 376 (497)
|+++++. +..... .....+++|+.|+++++. ++......+ ..+++|+.|+++++ .++. +..-...+++|++|+
T Consensus 198 L~l~~n~-i~~~~~-~~l~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 198 LHLDHNK-IQAIEL-EDLLRYSKLYRLGLGHNQ-IRMIENGSL-SFLPTLRELHLDNN-KLSR--VPAGLPDLKLLQVVY 270 (332)
T ss_dssp CBCCSSC-CCCCCT-TSSTTCTTCSCCBCCSSC-CCCCCTTGG-GGCTTCCEEECCSS-CCCB--CCTTGGGCTTCCEEE
T ss_pred EECCCCc-CCccCH-HHhcCCCCCCEEECCCCc-CCcCChhHh-hCCCCCCEEECCCC-cCee--cChhhhcCccCCEEE
Confidence 9998753 322111 112347899999999875 443222223 45899999999985 3442 122234579999999
Q ss_pred cCCCCCCChHHHHHHHh-----cCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 377 LLYCQRIGNLALLEVGR-----GCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 377 l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
+++ +.++......+.. ..+.|+.|++.+++.............+++|+.|+++++.
T Consensus 271 l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCC-CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 998 5666543322221 1477999999986432111122223468899999998874
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.36 E-value=2.2e-12 Score=128.60 Aligned_cols=245 Identities=18% Similarity=0.080 Sum_probs=112.6
Q ss_pred CCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCC
Q 010910 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (497)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 243 (497)
++|++|++++|.+.... ..+++|++|+++++. ++... . ..++|++|+++++. +... ...+++
T Consensus 61 ~~L~~L~L~~N~l~~lp-----~~l~~L~~L~Ls~N~-l~~lp-----~-~l~~L~~L~Ls~N~-l~~l-----~~~l~~ 122 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQ-LTSLP-----V-LPPGLLELSIFSNP-LTHL-----PALPSG 122 (622)
T ss_dssp TTCSEEEECSCCCSCCC-----CCCTTCCEEEECSCC-CSCCC-----C-CCTTCCEEEECSCC-CCCC-----CCCCTT
T ss_pred CCCcEEEecCCCCCCCC-----CcCCCCCEEEcCCCc-CCcCC-----C-CCCCCCEEECcCCc-CCCC-----CCCCCC
Confidence 46666666666543211 134566666666553 21100 0 12566666666542 1110 013456
Q ss_pred CcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCee
Q 010910 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (497)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 323 (497)
|+.|++++|.+..- ...+++|++|+++++.+..- ....++|+.|++.++. ++. +...+++|+.|
T Consensus 123 L~~L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~l~~l-----~~~~~~L~~L~L~~N~-l~~-----l~~~~~~L~~L 186 (622)
T 3g06_A 123 LCKLWIFGNQLTSL-----PVLPPGLQELSVSDNQLASL-----PALPSELCKLWAYNNQ-LTS-----LPMLPSGLQEL 186 (622)
T ss_dssp CCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEE
T ss_pred cCEEECCCCCCCcC-----CCCCCCCCEEECcCCcCCCc-----CCccCCCCEEECCCCC-CCC-----CcccCCCCcEE
Confidence 66666666554331 12245666666655554421 1123556666665532 211 01234566666
Q ss_pred eccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEec
Q 010910 324 TLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHL 403 (497)
Q Consensus 324 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 403 (497)
++++|. ++. +....++|+.|+++++. ++.. ...+++|+.|++++ +.++... ..+++|+.|++
T Consensus 187 ~Ls~N~-l~~-----l~~~~~~L~~L~L~~N~-l~~l-----~~~~~~L~~L~Ls~-N~L~~lp-----~~l~~L~~L~L 248 (622)
T 3g06_A 187 SVSDNQ-LAS-----LPTLPSELYKLWAYNNR-LTSL-----PALPSGLKELIVSG-NRLTSLP-----VLPSELKELMV 248 (622)
T ss_dssp ECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSSC-----CCCCTTCCEEECCS-SCCSCCC-----CCCTTCCEEEC
T ss_pred ECCCCC-CCC-----CCCccchhhEEECcCCc-cccc-----CCCCCCCCEEEccC-CccCcCC-----CCCCcCcEEEC
Confidence 666553 221 11124556666665532 2211 11235566666665 3444311 23456666666
Q ss_pred cCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccchhHHhhh
Q 010910 404 VDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGKFFSPQLH 470 (497)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 470 (497)
+++ .++. ++. .+++|+.|++++|. ++. +.....++++|+.|++++| .++......+.
T Consensus 249 s~N-~L~~--lp~---~~~~L~~L~Ls~N~-L~~--lp~~l~~l~~L~~L~L~~N-~l~~~~~~~l~ 305 (622)
T 3g06_A 249 SGN-RLTS--LPM---LPSGLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEGN-PLSERTLQALR 305 (622)
T ss_dssp CSS-CCSC--CCC---CCTTCCEEECCSSC-CCS--CCGGGGGSCTTCEEECCSC-CCCHHHHHHHH
T ss_pred CCC-CCCc--CCc---ccccCcEEeCCCCC-CCc--CCHHHhhccccCEEEecCC-CCCCcCHHHHH
Confidence 654 3331 111 35566666666653 441 2222345666666666666 44443333333
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=4.3e-14 Score=129.98 Aligned_cols=136 Identities=18% Similarity=0.091 Sum_probs=79.0
Q ss_pred cCcccCeeeccCCCCCChHHHHHHh--hcCCCCCEEeecCCCCCCh--hHHHHHHhhCCCCcEEecCCCCCCChHHHHHH
Q 010910 316 GCKKLKNLTLSDCYFLSDMGLEAIA--TGCKELTHLEINGCHNIGT--MGLESIGKFCRNLTELALLYCQRIGNLALLEV 391 (497)
Q Consensus 316 ~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 391 (497)
.+++|+.|+++++.......+..-. ..+++|++|+++++ .++. .....+...+++|++|++++ +.+++......
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~ 248 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPS 248 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTT-SCCCSSCCCSC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCC-CcCCcccchhh
Confidence 3667777777776522222222112 45778888888774 3442 22234445568888888887 45554321111
Q ss_pred HhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccc
Q 010910 392 GRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGK 463 (497)
Q Consensus 392 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 463 (497)
...+++|+.|+++++ .++. ++... .++|+.|++++|. ++.. .. ...+++|++|+++++ .+++
T Consensus 249 ~~~l~~L~~L~Ls~N-~l~~--ip~~~--~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFT-GLKQ--VPKGL--PAKLSVLDLSYNR-LDRN--PS-PDELPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp CCCCTTCCEEECTTS-CCSS--CCSSC--CSEEEEEECCSSC-CCSC--CC-TTTSCEEEEEECTTC-TTTC
T ss_pred hhhcCCCCEEECCCC-ccCh--hhhhc--cCCceEEECCCCC-CCCC--hh-HhhCCCCCEEeccCC-CCCC
Confidence 223578888888875 4441 11111 2688888888875 6543 22 357888888888888 4544
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.7e-13 Score=127.08 Aligned_cols=256 Identities=16% Similarity=0.148 Sum_probs=119.3
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 217 (497)
++|++|+++++. ++.... ..+..+++|++|+++++.+.......+. .+++|++|+++++. +..... ..+..+ ++
T Consensus 52 ~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~-~~~~~l-~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNY-LSNLSS-SWFKPL-SS 125 (353)
T ss_dssp TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CSSCCH-HHHTTC-TT
T ss_pred ccCcEEECCCCc-CcccCH-HHhccCCCCCEEECCCCccCccCHhhcC-CCCCCCEEECCCCc-CCcCCH-hHhCCC-cc
Confidence 467777776642 332211 1224567777777777665443222222 34566666666553 111000 001111 45
Q ss_pred ccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCC-CChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCce
Q 010910 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (497)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (497)
|++|+++++. +...........+++|++|+++++. +... ....+..+++|++|+++++.+....
T Consensus 126 L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~------------- 190 (353)
T 2z80_A 126 LTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQSYE------------- 190 (353)
T ss_dssp CSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEEC-------------
T ss_pred CCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEECCCCCcCccC-------------
Confidence 5555555542 1110000011234455555555442 2111 0111123444444444443332210
Q ss_pred eecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHH--HHhhCCCCcE
Q 010910 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLES--IGKFCRNLTE 374 (497)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~ 374 (497)
......+++|+.|+++++. +.... ......+++|+.|+++++. ++...... .....+.++.
T Consensus 191 --------------~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 191 --------------PKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKK 253 (353)
T ss_dssp --------------TTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCE
T ss_pred --------------HHHHhccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCCc-cccccccccccccccchhhc
Confidence 0111235566666666654 32222 2223336677777776642 32211111 1223567777
Q ss_pred EecCCCCCCChHHHHHH---HhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccc
Q 010910 375 LALLYCQRIGNLALLEV---GRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYK 434 (497)
Q Consensus 375 L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 434 (497)
+++++ ..+++..+..+ ...+++|+.|+++++ .++... ..+...+++|+.|++++|+-
T Consensus 254 l~L~~-~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 254 FTFRN-VKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP-DGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EEEES-CBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred ccccc-ccccCcchhhhHHHHhcccCCCEEECCCC-CCCccC-HHHHhcCCCCCEEEeeCCCc
Confidence 77777 56666544433 345788888888875 444211 11224578888999888873
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=3.5e-13 Score=130.17 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=35.7
Q ss_pred CCCcEEecCCCCCCChHHHHHHHhcC-CCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCC
Q 010910 370 RNLTELALLYCQRIGNLALLEVGRGC-KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN 448 (497)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (497)
++|+.|++++ +.++.. ..+ ++|+.|+++++ .++. + ...+++|+.|++++|. ++. +.. .++
T Consensus 297 ~~L~~L~l~~-N~l~~i------~~~~~~L~~L~Ls~N-~l~~--l---p~~~~~L~~L~L~~N~-l~~--lp~---~l~ 357 (454)
T 1jl5_A 297 PNLYYLNASS-NEIRSL------CDLPPSLEELNVSNN-KLIE--L---PALPPRLERLIASFNH-LAE--VPE---LPQ 357 (454)
T ss_dssp TTCCEEECCS-SCCSEE------CCCCTTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSSC-CSC--CCC---CCT
T ss_pred CcCCEEECcC-CcCCcc------cCCcCcCCEEECCCC-cccc--c---cccCCcCCEEECCCCc-ccc--ccc---hhh
Confidence 4566666655 333321 112 46666666664 3332 1 1124667777776664 442 111 356
Q ss_pred CCCeEeeccc
Q 010910 449 SLTELSLRFC 458 (497)
Q Consensus 449 ~L~~L~l~~~ 458 (497)
+|++|++++|
T Consensus 358 ~L~~L~L~~N 367 (454)
T 1jl5_A 358 NLKQLHVEYN 367 (454)
T ss_dssp TCCEEECCSS
T ss_pred hccEEECCCC
Confidence 6777777766
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.32 E-value=1.2e-14 Score=133.47 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=40.9
Q ss_pred CCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcC-
Q 010910 343 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGC- 421 (497)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~- 421 (497)
+++|++|+++++ .++..... ....+++|++|++++ +.++...... ...+++|+.|+++++ .++......+ ..+
T Consensus 174 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~-~~~~ 247 (306)
T 2z66_A 174 LRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSH-NNFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQEL-QHFP 247 (306)
T ss_dssp CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTT-SCCSBCCSGG-GTTCTTCCEEECTTS-CCCBCSSSSC-CCCC
T ss_pred CcCCCEEECCCC-CcCCcCHH-HhcCCCCCCEEECCC-CccCccChhh-ccCcccCCEeECCCC-CCcccCHHHH-Hhhh
Confidence 555666666553 22221111 112346666666666 3333321111 234677777777764 3332221112 234
Q ss_pred CCCcEEeccccc
Q 010910 422 QNLKKLHIRRCY 433 (497)
Q Consensus 422 ~~L~~L~l~~~~ 433 (497)
++|+.|++++|+
T Consensus 248 ~~L~~L~L~~N~ 259 (306)
T 2z66_A 248 SSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTCC
T ss_pred ccCCEEEccCCC
Confidence 378888888776
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.31 E-value=5.8e-15 Score=135.76 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=97.6
Q ss_pred cCCCCcEEEccCCCCChh--HHHHHHh-cCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHh--
Q 010910 240 HCKSLETLSLDSEFIHNK--GVHAVAQ-GCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVG-- 314 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-- 314 (497)
.+++|++|++++|.+... .+..+.. ..++|++|+++++.+.......+ ..+++|++|+++++.-.....+....
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 455666666665554432 1111111 12566666666555543221111 23566777777664322111222222
Q ss_pred ccCcccCeeeccCCCCCCh--HHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHH
Q 010910 315 KGCKKLKNLTLSDCYFLSD--MGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVG 392 (497)
Q Consensus 315 ~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 392 (497)
..+++|+.|+++++. ++. .....+...+++|+.|+++++ .++..........+++|++|++++ +.++.. ..
T Consensus 198 ~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~i--p~-- 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSF-TGLKQV--PK-- 270 (312)
T ss_dssp TSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTT-SCCSSC--CS--
T ss_pred ccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCC-CccChh--hh--
Confidence 446778888887765 442 222344445788888888874 343321001112357888888888 455521 11
Q ss_pred hcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccC
Q 010910 393 RGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIG 436 (497)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 436 (497)
.-.++|+.|+++++ .+++. +. ...+++|+.|++++++ ++
T Consensus 271 ~~~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N~-l~ 309 (312)
T 1wwl_A 271 GLPAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGNP-FL 309 (312)
T ss_dssp SCCSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTCT-TT
T ss_pred hccCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCCC-CC
Confidence 01268888988885 55433 22 3468889999998886 54
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=1.6e-13 Score=132.60 Aligned_cols=284 Identities=18% Similarity=0.135 Sum_probs=141.2
Q ss_pred cCCccccchhhHHHHHhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccC
Q 010910 119 QSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRF 198 (497)
Q Consensus 119 ~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 198 (497)
.++.+.++...+..+....++|++|+++++. ++. +.. +..+++|++|++++|.+... ....++|++|++++
T Consensus 112 ~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N~l~~l-----p~~~~~L~~L~L~~ 182 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNNSLKKL-----PDLPPSLEFIAAGN 182 (454)
T ss_dssp TCCEEECCSSCCSCCCSCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCS
T ss_pred CCcEEECCCCccCcccCCCCCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCCcCccc-----CCCcccccEEECcC
Confidence 3444444443333222222567777776642 332 111 34567777777777765431 11224677777776
Q ss_pred CCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCC
Q 010910 199 CEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN 278 (497)
Q Consensus 199 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 278 (497)
+. +... .. ... .++|+.|+++++.... +....++|++|++++|.+..-. . +..+++|++|+++++.
T Consensus 183 n~-l~~l--~~-~~~-l~~L~~L~l~~N~l~~------l~~~~~~L~~L~l~~n~l~~lp--~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 183 NQ-LEEL--PE-LQN-LPFLTAIYADNNSLKK------LPDLPLSLESIVAGNNILEELP--E-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp SC-CSSC--CC-CTT-CTTCCEEECCSSCCSS------CCCCCTTCCEEECCSSCCSSCC--C-CTTCTTCCEEECCSSC
T ss_pred Cc-CCcC--cc-ccC-CCCCCEEECCCCcCCc------CCCCcCcccEEECcCCcCCccc--c-cCCCCCCCEEECCCCc
Confidence 63 2111 01 112 2677777777653211 0012346777777776654221 1 3457777778777666
Q ss_pred CChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCC
Q 010910 279 VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358 (497)
Q Consensus 279 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 358 (497)
+.. +....++|+.|+++++. +.. +....++|+.|+++++. ++. +....++|+.|+++++. +.
T Consensus 249 l~~-----l~~~~~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~ls~N~-l~~-----l~~~~~~L~~L~l~~N~-l~ 310 (454)
T 1jl5_A 249 LKT-----LPDLPPSLEALNVRDNY-LTD-----LPELPQSLTFLDVSENI-FSG-----LSELPPNLYYLNASSNE-IR 310 (454)
T ss_dssp CSS-----CCSCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSE-----ESCCCTTCCEEECCSSC-CS
T ss_pred CCc-----ccccccccCEEECCCCc-ccc-----cCcccCcCCEEECcCCc-cCc-----ccCcCCcCCEEECcCCc-CC
Confidence 553 11124677777776653 221 11224678888887764 332 11123678888888743 33
Q ss_pred hhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCH-
Q 010910 359 TMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGN- 437 (497)
Q Consensus 359 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 437 (497)
.. ....++|++|++++ +.++.. ...+++|+.|+++++ .++. ++. .+++|+.|++++|. ++.
T Consensus 311 ~i-----~~~~~~L~~L~Ls~-N~l~~l-----p~~~~~L~~L~L~~N-~l~~--lp~---~l~~L~~L~L~~N~-l~~l 372 (454)
T 1jl5_A 311 SL-----CDLPPSLEELNVSN-NKLIEL-----PALPPRLERLIASFN-HLAE--VPE---LPQNLKQLHVEYNP-LREF 372 (454)
T ss_dssp EE-----CCCCTTCCEEECCS-SCCSCC-----CCCCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSSC
T ss_pred cc-----cCCcCcCCEEECCC-Cccccc-----cccCCcCCEEECCCC-cccc--ccc---hhhhccEEECCCCC-CCcC
Confidence 21 11125899999988 555541 223688999999886 4442 222 36789999998875 433
Q ss_pred -H---HH---------HHHHhhCCCCCeEeeccccccc
Q 010910 438 -N---GI---------VAVGEHCNSLTELSLRFCDRYG 462 (497)
Q Consensus 438 -~---~~---------~~~~~~~~~L~~L~l~~~~~l~ 462 (497)
. .+ ..+...+++|+.|+++++ .++
T Consensus 373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~ 409 (454)
T 1jl5_A 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLR 409 (454)
T ss_dssp CCCCTTCCEEECCC------------------------
T ss_pred CCChHHHHhhhhcccccccccccCcCCEEECCCC-cCC
Confidence 0 00 011112378999999888 443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=2.1e-13 Score=133.05 Aligned_cols=121 Identities=18% Similarity=0.107 Sum_probs=65.8
Q ss_pred CCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCC
Q 010910 163 CIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 242 (497)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (497)
+++|++|+++++.+.......+. .+++|++|+++++....... +.. .++|++|+++++. +... ...+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~----l~~-l~~L~~L~Ls~N~-l~~l------~~~~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD----LES-LSTLRTLDLNNNY-VQEL------LVGP 99 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE----CTT-CTTCCEEECCSSE-EEEE------EECT
T ss_pred CCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc----ccc-CCCCCEEEecCCc-CCCC------CCCC
Confidence 34899999999887654333343 56788888888774211111 112 2677777777653 2111 1236
Q ss_pred CCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeeccc
Q 010910 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYS 301 (497)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 301 (497)
+|++|++++|.+..... ..+++|+.|+++++.+.......+ ..+++|+.|++++
T Consensus 100 ~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 100 SIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKL 153 (487)
T ss_dssp TCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTT
T ss_pred CcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCC
Confidence 67777777666544321 235666666666665543211111 1245555555544
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=3.2e-14 Score=130.63 Aligned_cols=182 Identities=21% Similarity=0.086 Sum_probs=104.9
Q ss_pred CCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCC
Q 010910 266 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE 345 (497)
Q Consensus 266 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 345 (497)
+++|++|+++++.+..- ......+++|++|+++++. +...........+++|+.|+++++. +.... ......+++
T Consensus 77 ~~~L~~L~Ls~n~i~~l--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~ 151 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSS 151 (306)
T ss_dssp CSCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECS-TTTTTTCTT
T ss_pred ccccCEEECCCCccccC--hhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccc-hhhcccCcC
Confidence 45555555554443210 0001235666666665532 1111000122346788888888764 32211 122345789
Q ss_pred CCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCc
Q 010910 346 LTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLK 425 (497)
Q Consensus 346 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 425 (497)
|++|+++++. +...........+++|++|++++ +.+++..... ...+++|+.|+++++ .++...... ...+++|+
T Consensus 152 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~ 226 (306)
T 2z66_A 152 LEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQ 226 (306)
T ss_dssp CCEEECTTCE-EGGGEECSCCTTCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCC
T ss_pred CCEEECCCCc-cccccchhHHhhCcCCCEEECCC-CCcCCcCHHH-hcCCCCCCEEECCCC-ccCccChhh-ccCcccCC
Confidence 9999998853 43322222334579999999998 4665532222 245799999999986 443322112 24589999
Q ss_pred EEecccccccCHHHHHHHHhhC-CCCCeEeecccc
Q 010910 426 KLHIRRCYKIGNNGIVAVGEHC-NSLTELSLRFCD 459 (497)
Q Consensus 426 ~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 459 (497)
.|++++|. ++......+ ..+ ++|++|++++|+
T Consensus 227 ~L~L~~N~-l~~~~~~~~-~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 227 VLDYSLNH-IMTSKKQEL-QHFPSSLAFLNLTQND 259 (306)
T ss_dssp EEECTTSC-CCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred EeECCCCC-CcccCHHHH-HhhhccCCEEEccCCC
Confidence 99999986 654333233 355 489999999994
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=4.4e-13 Score=123.09 Aligned_cols=235 Identities=14% Similarity=0.039 Sum_probs=114.1
Q ss_pred CCCceEeccCCCCCCHHHHHHHHhhc-ccCccEEecCCCCCCChHHHHHHH-hcCCCCcEEEccCCCCChhHH---HHHH
Q 010910 189 NQLEDLNLRFCEGLTDTGLVDLAHGC-GKSLKSLGIAACVKITDVSLEAVG-SHCKSLETLSLDSEFIHNKGV---HAVA 263 (497)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~l~~~~-~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~ 263 (497)
..++.+.+..+. +.+..+..+.... .++|++|+++++..... ....+. ..+++|++|++++|.+..... ....
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 357777777663 4554443332211 25677777776532111 111110 345666666666665543110 0111
Q ss_pred hcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHH--Hhh
Q 010910 264 QGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEA--IAT 341 (497)
Q Consensus 264 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--l~~ 341 (497)
..+++|++|+++++.+..... .....+++|+.|++++|.......+.. ...
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~---------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSC---------------------------EQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCT---------------------------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred hhccCCCEEEeeCCCcchhhH---------------------------HHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 245666666665554432110 011124556666666554222111111 112
Q ss_pred cCCCCCEEeecCCCCCCh--hHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHh--cCCCCcEEeccCCCCCCHHHHHHH
Q 010910 342 GCKELTHLEINGCHNIGT--MGLESIGKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLVDCSSIGDDAICSI 417 (497)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~ 417 (497)
.+++|++|+++++. ++. .....+...+++|++|++++ +.+++.....+.. .+++|++|+++++ .++. ++..
T Consensus 195 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~--lp~~ 269 (310)
T 4glp_A 195 KFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ--VPKG 269 (310)
T ss_dssp SSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS--CCSC
T ss_pred cCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCC-CCCc--hhhh
Confidence 45666666666643 331 11122334457777777776 4444321111111 1267777777764 4431 1111
Q ss_pred HHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccch
Q 010910 418 AEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGKF 464 (497)
Q Consensus 418 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 464 (497)
-+++|+.|++++|. ++.. .. ...+++|+.|+++++ .+++.
T Consensus 270 --~~~~L~~L~Ls~N~-l~~~--~~-~~~l~~L~~L~L~~N-~l~~~ 309 (310)
T 4glp_A 270 --LPAKLRVLDLSSNR-LNRA--PQ-PDELPEVDNLTLDGN-PFLVP 309 (310)
T ss_dssp --CCSCCSCEECCSCC-CCSC--CC-TTSCCCCSCEECSST-TTSCC
T ss_pred --hcCCCCEEECCCCc-CCCC--ch-hhhCCCccEEECcCC-CCCCC
Confidence 13688888888875 5532 11 256788888888887 55553
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.27 E-value=7.6e-14 Score=129.04 Aligned_cols=130 Identities=20% Similarity=0.230 Sum_probs=62.4
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (497)
+++|+.|+++++. ++ .+......+++|++|+++++. ++.. ..-...+++|++|++++|...... ......++
T Consensus 182 l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~L~~N~-l~~l--~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~ 253 (328)
T 4fcg_A 182 LVNLQSLRLEWTG-IR--SLPASIANLQNLKSLKIRNSP-LSAL--GPAIHHLPKLEELDLRGCTALRNY--PPIFGGRA 253 (328)
T ss_dssp STTCCEEEEEEEC-CC--CCCGGGGGCTTCCEEEEESSC-CCCC--CGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCC
T ss_pred CCCCCEEECcCCC-cC--cchHhhcCCCCCCEEEccCCC-CCcC--chhhccCCCCCEEECcCCcchhhh--HHHhcCCC
Confidence 5666666666653 32 111113346677777776643 3211 111234566777777664332211 11122356
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+|+.|++++|..... ++.....+++|+.|++++|...+. +.....++++|+.+++...
T Consensus 254 ~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~--iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 254 PLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSR--LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCEEECTTCTTCCB--CCTTGGGCTTCCEEECTTCTTCCC--CCGGGGGSCTTCEEECCGG
T ss_pred CCCEEECCCCCchhh--cchhhhcCCCCCEEeCCCCCchhh--ccHHHhhccCceEEeCCHH
Confidence 666666666533321 111123466666666666653321 2222345666666666543
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=2.3e-11 Score=111.31 Aligned_cols=187 Identities=17% Similarity=0.127 Sum_probs=91.3
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++|++|++.++...... . ...+++|++|+++++.+..... +..+++|++|+++++.+..-. . ...+++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~---~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE---G-VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--A-IAGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSCCCCCT---T-GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG--G-GTTCTTCC
T ss_pred CCcCEEEeeCCCccCch---h-hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCch--h-hcCCCCCC
Confidence 67888888776422211 1 2467777788877776654332 455677777777666554311 1 22344455
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (497)
+|++ ++|. +++. .. ...+++|++|+++++. ++.... ...+++|++|
T Consensus 111 ~L~l--------------------------~~n~-l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L 156 (308)
T 1h6u_A 111 TLDL--------------------------TSTQ-ITDV--TP-LAGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYL 156 (308)
T ss_dssp EEEC--------------------------TTSC-CCCC--GG-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEE
T ss_pred EEEC--------------------------CCCC-CCCc--hh-hcCCCCCCEEECCCCc-cCcCcc---ccCCCCccEE
Confidence 5555 4433 2211 11 2235555555555532 221111 2234555555
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEee
Q 010910 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (497)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (497)
++++ +.+++... ...+++|+.|+++++ .+++.. . ...+++|+.|++++|. +++.. . ...+++|+.|++
T Consensus 157 ~l~~-n~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l 224 (308)
T 1h6u_A 157 SIGN-AQVSDLTP---LANLSKLTTLKADDN-KISDIS--P-LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTL 224 (308)
T ss_dssp ECCS-SCCCCCGG---GTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEE
T ss_pred EccC-CcCCCChh---hcCCCCCCEEECCCC-ccCcCh--h-hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEc
Confidence 5555 23333211 234556666666554 232211 1 2345666666666654 43222 1 245666666666
Q ss_pred ccc
Q 010910 456 RFC 458 (497)
Q Consensus 456 ~~~ 458 (497)
++|
T Consensus 225 ~~N 227 (308)
T 1h6u_A 225 TNQ 227 (308)
T ss_dssp EEE
T ss_pred cCC
Confidence 665
No 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.26 E-value=1.4e-13 Score=127.26 Aligned_cols=226 Identities=18% Similarity=0.175 Sum_probs=133.0
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++++.|+++++. +... ......+++|++|+++++.+.. +...+..+++|++|+++++.+.. +......+++|+
T Consensus 81 ~~l~~L~L~~n~-l~~l--p~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQF--PDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSC-CSSC--CSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCCC--CCGGGGGCTTCC
T ss_pred cceeEEEccCCC-chhc--ChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCcccc--CcHHHhcCcCCC
Confidence 678888887753 2211 1112346778888887776651 22223456777777777665541 111122355566
Q ss_pred eeecccccCCCHHHHHHHhccCc-ccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCK-KLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (497)
+|+++++..... .+ .+....+.+ ....+++|++|+++++ .++. +......+++|++
T Consensus 154 ~L~L~~n~~~~~---------~p~~~~~~~~~~-----------~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 154 ELSIRACPELTE---------LPEPLASTDASG-----------EHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKS 210 (328)
T ss_dssp EEEEEEETTCCC---------CCSCSEEEC-CC-----------CEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCE
T ss_pred EEECCCCCCccc---------cChhHhhccchh-----------hhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCE
Confidence 666555422110 11 111111111 1235899999999985 3431 2222455799999
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEe
Q 010910 375 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 454 (497)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 454 (497)
|++++ +.++.. ......+++|+.|++++|..... ++.....+++|+.|++++|...+. +.....++++|++|+
T Consensus 211 L~L~~-N~l~~l--~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 211 LKIRN-SPLSAL--GPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLD 283 (328)
T ss_dssp EEEES-SCCCCC--CGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB--CCTTGGGCTTCCEEE
T ss_pred EEccC-CCCCcC--chhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh--cchhhhcCCCCCEEe
Confidence 99998 455532 11234689999999999754432 222234689999999999864432 122236899999999
Q ss_pred eccccccc--chhHHhhhhhcccccc
Q 010910 455 LRFCDRYG--KFFSPQLHSYSHFHLG 478 (497)
Q Consensus 455 l~~~~~l~--~~~~~~l~~l~~~~~~ 478 (497)
+++|+.++ +.++..+.++..+.+.
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCCchhhccHHHhhccCceEEeCC
Confidence 99996444 3566667766666553
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=4.1e-13 Score=121.82 Aligned_cols=133 Identities=21% Similarity=0.171 Sum_probs=62.9
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (497)
+++|+.|+++++. ++... ......+++|++|+++++. ++.... .....+++|++|++++ +.++..... ....++
T Consensus 104 l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~-~~~~l~ 177 (285)
T 1ozn_A 104 LGRLHTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHG-NRISSVPER-AFRGLH 177 (285)
T ss_dssp CTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS-SCCCEECTT-TTTTCT
T ss_pred CcCCCEEECCCCc-CCEEC-HhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccEEECCC-CcccccCHH-HhcCcc
Confidence 4555555555543 22111 1112235666666666532 221111 1112356666666666 344332111 122356
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc
Q 010910 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459 (497)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (497)
+|+.|+++++ .++......+ ..+++|+.|++++|. ++......+ ..+++|++|++++++
T Consensus 178 ~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANN-LSALPTEAL-APLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CSCCCHHHH-TTCTTCCEEECCSSC
T ss_pred ccCEEECCCC-cccccCHhHc-cCcccccEeeCCCCc-CCcCCHHHc-ccCcccCEEeccCCC
Confidence 6777777664 3333211112 346677777777664 443222222 466777777777664
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=1.9e-13 Score=133.33 Aligned_cols=239 Identities=17% Similarity=0.093 Sum_probs=139.0
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhc
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 214 (497)
..+++|+.|+++++. ++... ...+..+++|++|+|++|.+..... ...+++|++|+++++. +.... .
T Consensus 31 ~~~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~-------~ 97 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-LSQIS-AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQELL-------V 97 (487)
T ss_dssp TTGGGCCEEECCSSC-CCCCC-GGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSE-EEEEE-------E
T ss_pred ccCCCccEEEeeCCc-CCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCc-CCCCC-------C
Confidence 345699999999863 44322 1233578999999999998754332 3467899999999884 22110 1
Q ss_pred ccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCC
Q 010910 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (497)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L 294 (497)
.++|+.|+++++..... . ...+++|++|++++|.+....... +..+++|+.|+++++.+.......+...+++|
T Consensus 98 ~~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 98 GPSIETLHAANNNISRV-S----CSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp CTTCCEEECCSSCCCCE-E----ECCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CCCcCEEECcCCcCCCC-C----ccccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 27899999998753222 1 135789999999998876543222 24589999999999988765444454456788
Q ss_pred ceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcE
Q 010910 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (497)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (497)
+.|+++++. ++.. ... ..+++|+.|++++|. ++.... . ...+++|+.|+++++ .++. +......+++|+.
T Consensus 172 ~~L~Ls~N~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~~~~-~-~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~ 241 (487)
T 3oja_A 172 EHLNLQYNF-IYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-E-FQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEH 241 (487)
T ss_dssp CEEECTTSC-CCEE--ECC-CCCTTCCEEECCSSC-CCEECG-G-GGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCE
T ss_pred cEEecCCCc-cccc--ccc-ccCCCCCEEECCCCC-CCCCCH-h-HcCCCCccEEEecCC-cCcc--cchhhccCCCCCE
Confidence 888887653 2211 000 125566666666654 332111 1 223556666666653 2321 1111222455555
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEec
Q 010910 375 LALLYCQRIGNLALLEVGRGCKSLQALHL 403 (497)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 403 (497)
|++++ +.+....+......++.|+.+.+
T Consensus 242 L~l~~-N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 242 FDLRG-NGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp EECTT-CCBCHHHHHHHHTTCHHHHHHHH
T ss_pred EEcCC-CCCcCcchHHHHHhCCCCcEEec
Confidence 55555 33432233333333444444433
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=1.9e-13 Score=132.23 Aligned_cols=227 Identities=17% Similarity=0.099 Sum_probs=151.0
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++++.|+++++. +....... ...+++|++|++++|.+..... ..+.++++|++|+++++.+..-... ....+++|+
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNS-FKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNG-AFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTT-TSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTT-TSCSCSSCC
T ss_pred CCCcEEEccCCc-CCeeCHHH-hhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHh-HhhccccCc
Confidence 689999999864 33222122 2478999999999988765432 2345689999999998877642211 223578999
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (497)
+|+++++. +.... ......+++|+.|+++++..+...... ....+++|++|+++++. ++... . ...+++|++|
T Consensus 140 ~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L 212 (440)
T 3zyj_A 140 ELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCN-LREIP--N-LTPLIKLDEL 212 (440)
T ss_dssp EEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSC-CSSCC--C-CTTCSSCCEE
T ss_pred eeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCc-Ccccc--c-cCCCcccCEE
Confidence 99998753 32111 112334789999999986655432222 23458999999999854 43221 1 2347899999
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEee
Q 010910 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (497)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (497)
++++ +.++..... ....+++|+.|+++++ .++......+ ..+++|+.|++++|. ++..... ....+++|+.|++
T Consensus 213 ~Ls~-N~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L 286 (440)
T 3zyj_A 213 DLSG-NHLSAIRPG-SFQGLMHLQKLWMIQS-QIQVIERNAF-DNLQSLVEINLAHNN-LTLLPHD-LFTPLHHLERIHL 286 (440)
T ss_dssp ECTT-SCCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTSS-TTCTTCCEEECTTSC-CCCCCTT-TTSSCTTCCEEEC
T ss_pred ECCC-CccCccChh-hhccCccCCEEECCCC-ceeEEChhhh-cCCCCCCEEECCCCC-CCccChh-HhccccCCCEEEc
Confidence 9998 566653222 2345899999999985 5544322222 358999999999985 6543222 2257899999999
Q ss_pred cccc
Q 010910 456 RFCD 459 (497)
Q Consensus 456 ~~~~ 459 (497)
++++
T Consensus 287 ~~Np 290 (440)
T 3zyj_A 287 HHNP 290 (440)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9885
No 77
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=2.6e-13 Score=131.75 Aligned_cols=227 Identities=19% Similarity=0.105 Sum_probs=151.2
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++++.|+++++. +....... ...+++|++|++++|.+..... ..+.++++|++|+++++.+..... .....+++|+
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADT-FRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPS-GAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCT-TTSSSCTTCC
T ss_pred CCccEEECcCCc-CceECHHH-cCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccCh-hhhcccCCCC
Confidence 689999999864 33221121 2478999999999988765432 233568999999999887764221 1223578999
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (497)
+|+++++. +.... ......+++|+.|+++++..+....... ...+++|+.|+++++. ++.. .. ...+++|++|
T Consensus 151 ~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~L 223 (452)
T 3zyi_A 151 ELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMCN-IKDM--PN-LTPLVGLEEL 223 (452)
T ss_dssp EEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTSC-CSSC--CC-CTTCTTCCEE
T ss_pred EEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCCc-cccc--cc-ccccccccEE
Confidence 99998763 32111 1123357899999999866554322222 3458999999999854 4322 11 2347899999
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEee
Q 010910 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (497)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (497)
++++ +.++...... ...+++|+.|+++++ .++...... ...+++|+.|++++|. ++.... .....+++|+.|++
T Consensus 224 ~Ls~-N~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 224 EMSG-NHFPEIRPGS-FHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHNN-LSSLPH-DLFTPLRYLVELHL 297 (452)
T ss_dssp ECTT-SCCSEECGGG-GTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CSCCCT-TSSTTCTTCCEEEC
T ss_pred ECcC-CcCcccCccc-ccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCCc-CCccCh-HHhccccCCCEEEc
Confidence 9998 5665532222 345899999999986 454332222 2458999999999985 653222 22357899999999
Q ss_pred cccc
Q 010910 456 RFCD 459 (497)
Q Consensus 456 ~~~~ 459 (497)
++++
T Consensus 298 ~~Np 301 (452)
T 3zyi_A 298 HHNP 301 (452)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9885
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=2.9e-13 Score=131.32 Aligned_cols=243 Identities=18% Similarity=0.109 Sum_probs=155.9
Q ss_pred CCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCH---HHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCC
Q 010910 166 LKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD---TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 242 (497)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 242 (497)
.+.++.++..+.... . ...++|++|+++++. +.. ..+.. .++|+.|+++++. +...... ....++
T Consensus 56 ~~~v~c~~~~l~~iP-~---~~~~~l~~L~L~~n~-i~~~~~~~~~~-----l~~L~~L~Ls~n~-i~~~~~~-~~~~l~ 123 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP-Q---GIPSNTRYLNLMENN-IQMIQADTFRH-----LHHLEVLQLGRNS-IRQIEVG-AFNGLA 123 (452)
T ss_dssp SCEEECCSSCCSSCC-S---CCCTTCSEEECCSSC-CCEECTTTTTT-----CTTCCEEECCSSC-CCEECTT-TTTTCT
T ss_pred CcEEEECCCCcCccC-C---CCCCCccEEECcCCc-CceECHHHcCC-----CCCCCEEECCCCc-cCCcChh-hccCcc
Confidence 455665555433211 1 123689999999874 322 22222 2899999999864 3322211 224789
Q ss_pred CCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCe
Q 010910 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 322 (497)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 322 (497)
+|++|++++|.+..... ..+..+++|++|+++++.+..-.. .....+++|+.|++++++.+..... .....+++|+.
T Consensus 124 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~ 200 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPS-GAFEYLSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKY 200 (452)
T ss_dssp TCCEEECCSSCCSBCCT-TTSSSCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCE
T ss_pred cCCEEECCCCcCCccCh-hhhcccCCCCEEECCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCE
Confidence 99999999987764322 223568999999999888764221 1233579999999988654432111 12335789999
Q ss_pred eeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEe
Q 010910 323 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALH 402 (497)
Q Consensus 323 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 402 (497)
|+++++. ++.. .. ...+++|+.|+++++ .++..... ....+++|+.|++++ +.++...... ...+++|+.|+
T Consensus 201 L~L~~n~-l~~~--~~-~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~ 272 (452)
T 3zyi_A 201 LNLGMCN-IKDM--PN-LTPLVGLEELEMSGN-HFPEIRPG-SFHGLSSLKKLWVMN-SQVSLIERNA-FDGLASLVELN 272 (452)
T ss_dssp EECTTSC-CSSC--CC-CTTCTTCCEEECTTS-CCSEECGG-GGTTCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEE
T ss_pred EECCCCc-cccc--cc-ccccccccEEECcCC-cCcccCcc-cccCccCCCEEEeCC-CcCceECHHH-hcCCCCCCEEE
Confidence 9999975 4332 22 235889999999985 44432212 234579999999998 5665433222 34589999999
Q ss_pred ccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 403 LVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 403 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
++++ .++.... .....+++|+.|++++|+
T Consensus 273 L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 273 LAHN-NLSSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred CCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence 9986 4543221 222458999999999987
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.23 E-value=6.8e-11 Score=108.19 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=107.1
Q ss_pred CCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCC
Q 010910 188 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 267 (497)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 267 (497)
+++|++|++.++....-.++ .. .++|+.|+++++....... ...+++|++|+++++.+.... .+..++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~----~~-l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~~---~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGV----QY-LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVS---AIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTG----GG-CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCG---GGTTCT
T ss_pred cCCcCEEEeeCCCccCchhh----hc-cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCch---hhcCCC
Confidence 36999999998842221122 22 3899999999975332222 468999999999998876642 345689
Q ss_pred CCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCC
Q 010910 268 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 347 (497)
Q Consensus 268 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 347 (497)
+|++|+++++.+.... . ...+++|++|+++++ . ++... . ...+++|+
T Consensus 108 ~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n--------------------------~-l~~~~--~-l~~l~~L~ 154 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLN--------------------------Q-ITNIS--P-LAGLTNLQ 154 (308)
T ss_dssp TCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSS--------------------------C-CCCCG--G-GGGCTTCC
T ss_pred CCCEEECCCCCCCCch--h-hcCCCCCCEEECCCC--------------------------c-cCcCc--c-ccCCCCcc
Confidence 9999999988776421 1 233455555555543 2 11111 0 22355555
Q ss_pred EEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEE
Q 010910 348 HLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKL 427 (497)
Q Consensus 348 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 427 (497)
.|+++++ .++.... ...+++|++|++++ +.+++... ...+++|+.|+++++ .+++.. . ...+++|+.|
T Consensus 155 ~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~-n~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L 222 (308)
T 1h6u_A 155 YLSIGNA-QVSDLTP---LANLSKLTTLKADD-NKISDISP---LASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIV 222 (308)
T ss_dssp EEECCSS-CCCCCGG---GTTCTTCCEEECCS-SCCCCCGG---GGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEE
T ss_pred EEEccCC-cCCCChh---hcCCCCCCEEECCC-CccCcChh---hcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEE
Confidence 5555553 2222111 23345666666655 33433221 234566666666664 333222 1 2346677777
Q ss_pred eccccc
Q 010910 428 HIRRCY 433 (497)
Q Consensus 428 ~l~~~~ 433 (497)
++++|+
T Consensus 223 ~l~~N~ 228 (308)
T 1h6u_A 223 TLTNQT 228 (308)
T ss_dssp EEEEEE
T ss_pred EccCCe
Confidence 776664
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=5.2e-13 Score=121.11 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=7.4
Q ss_pred cCCCCcEEeccccc
Q 010910 420 GCQNLKKLHIRRCY 433 (497)
Q Consensus 420 ~~~~L~~L~l~~~~ 433 (497)
.+++|+.|++++|+
T Consensus 223 ~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 223 PLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCcccCEEeccCCC
Confidence 35555555555544
No 81
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.22 E-value=4e-13 Score=129.86 Aligned_cols=246 Identities=15% Similarity=0.108 Sum_probs=156.2
Q ss_pred CCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCc
Q 010910 166 LKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLE 245 (497)
Q Consensus 166 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 245 (497)
.+.++..+..+.... . ...++++.|+++++. +.......+ .. .++|++|+++++. +...... ....+++|+
T Consensus 45 ~~~v~c~~~~l~~iP-~---~~~~~l~~L~L~~n~-i~~~~~~~~-~~-l~~L~~L~Ls~n~-i~~i~~~-~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVP-D---GISTNTRLLNLHENQ-IQIIKVNSF-KH-LRHLEILQLSRNH-IRTIEIG-AFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCC-S---CCCTTCSEEECCSCC-CCEECTTTT-SS-CSSCCEEECCSSC-CCEECGG-GGTTCSSCC
T ss_pred CCEEEeCCCCcCcCC-C---CCCCCCcEEEccCCc-CCeeCHHHh-hC-CCCCCEEECCCCc-CCccChh-hccCCccCC
Confidence 455665555433211 1 122689999999874 322111111 22 2899999999864 3322212 234789999
Q ss_pred EEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeec
Q 010910 246 TLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTL 325 (497)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 325 (497)
+|++++|.+..... ..+..+++|++|+++++.+...... ....+++|++|++.+++.+.... ......+++|+.|++
T Consensus 116 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 116 TLELFDNRLTTIPN-GAFVYLSKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNL 192 (440)
T ss_dssp EEECCSSCCSSCCT-TTSCSCSSCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEEC
T ss_pred EEECCCCcCCeeCH-hHhhccccCceeeCCCCcccccCHH-HhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecC
Confidence 99999987764322 2235689999999998887642211 22357999999998765443211 112335889999999
Q ss_pred cCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccC
Q 010910 326 SDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVD 405 (497)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (497)
++|. ++. +.. ...+++|+.|+++++ .++..... ....+++|++|++++ +.++...... ...+++|+.|++++
T Consensus 193 ~~n~-l~~--~~~-~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 193 AMCN-LRE--IPN-LTPLIKLDELDLSGN-HLSAIRPG-SFQGLMHLQKLWMIQ-SQIQVIERNA-FDNLQSLVEINLAH 264 (440)
T ss_dssp TTSC-CSS--CCC-CTTCSSCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTT-CCCCEECTTS-STTCTTCCEEECTT
T ss_pred CCCc-Ccc--ccc-cCCCcccCEEECCCC-ccCccChh-hhccCccCCEEECCC-CceeEEChhh-hcCCCCCCEEECCC
Confidence 9975 432 122 235889999999985 45433222 234479999999998 5665543222 24589999999998
Q ss_pred CCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 406 CSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
+ .++.... .....+++|+.|++++|+
T Consensus 265 N-~l~~~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 265 N-NLTLLPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp S-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred C-CCCccCh-hHhccccCCCEEEcCCCC
Confidence 6 5543222 223458999999999887
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.22 E-value=1.1e-13 Score=140.91 Aligned_cols=128 Identities=27% Similarity=0.252 Sum_probs=80.1
Q ss_pred cCCccccchhhHHHH----HhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceE
Q 010910 119 QSESYYLSDSGLNAL----ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDL 194 (497)
Q Consensus 119 ~l~~~~~~~~~l~~l----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 194 (497)
+++.+.++...+..+ ...+++|+.|+++++. ++... ...+..+++|++|+|++|.+.......+ ..+++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGG-TTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHh-cCCCCCCEE
Confidence 445555555444332 2457899999999863 44321 1224568999999999998654333333 366899999
Q ss_pred eccCCCC--CCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCC
Q 010910 195 NLRFCEG--LTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIH 255 (497)
Q Consensus 195 ~l~~~~~--~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 255 (497)
+++++.- +.+..+. . .++|++|+++++. +...........+++|++|++++|.+.
T Consensus 130 ~Ls~N~l~~l~~~~~~----~-L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 130 VAVETNLASLENFPIG----H-LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp ECTTSCCCCSTTCCCT----T-CTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCCChhhhh----c-CcccCeeccccCc-cccCCCchhhccchhhhhhcccCcccc
Confidence 9998742 1111122 2 2789999999864 222112223357899999999987654
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.21 E-value=7.6e-14 Score=142.03 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=68.9
Q ss_pred ccccCCccccchhhHHHH----HhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCC
Q 010910 116 GQFQSESYYLSDSGLNAL----ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQL 191 (497)
Q Consensus 116 ~~~~l~~~~~~~~~l~~l----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 191 (497)
.+.+|+.+.++...+..+ ...+++|++|+|+++. ++... ...+..+++|++|++++|.+.......+ ..+++|
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~~-~~L~~L 150 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTL 150 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC-GGGGTTCTTCCEEECTTSCCCCSTTCCC-TTCTTC
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCC-HHHhcCCCCCCEEECCCCcCCCCChhhh-hcCccc
Confidence 355777777776655433 3457899999999853 54322 2234578999999999998654322222 356899
Q ss_pred ceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCC
Q 010910 192 EDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACV 227 (497)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 227 (497)
++|+++++. +........... .++|++|+++++.
T Consensus 151 ~~L~Ls~N~-l~~~~~~~~~~~-l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 151 KELNVAHNL-IQSFKLPEYFSN-LTNLEHLDLSSNK 184 (635)
T ss_dssp CEEECCSSC-CCCCCCCGGGGG-CTTCCEEECCSSC
T ss_pred CeeccccCc-cccCCCchhhcc-chhhhhhcccCcc
Confidence 999999874 221111112222 2789999999863
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=1.8e-12 Score=118.93 Aligned_cols=136 Identities=20% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCCCEEEccCcccCcHhHHHHHh--hCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCCh---HHHHHHH
Q 010910 164 IHLKSLDLQGCYVGDQGLAAVGK--VCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITD---VSLEAVG 238 (497)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~---~~~~~~~ 238 (497)
..++.+.+.++.+.+..+..+.. ..++|++|+++++.. .......+.....++|++|+++++..... .....+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~- 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ- 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-
Confidence 56899999998887766554433 236799999998852 21110111101237899999998753321 111222
Q ss_pred hcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHH-HHH--HHhcCCCCceeecccc
Q 010910 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEA-LVA--VGNQCLSLELLALYSF 302 (497)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-l~~--l~~~~~~L~~L~l~~~ 302 (497)
..+++|++|++++|.+..... ..+..+++|++|+++++.+.... +.. ....+++|++|+++++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred hhccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 378999999999988754322 22345788889988888765432 111 1123455666666554
No 85
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.18 E-value=3.2e-14 Score=130.79 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=33.8
Q ss_pred CCCcEEeeccCCCcChH-HHHHHHHhCCCCCEEEccC-cccCcHhHHHHHhhCCCCceEeccCC
Q 010910 138 SKLEKLSLIWCSNISSL-GLMSLAQKCIHLKSLDLQG-CYVGDQGLAAVGKVCNQLEDLNLRFC 199 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (497)
.+++.|+++++. +... .+...+..+++|++|++++ +.+.......+. .+++|++|+++++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEE
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCC
Confidence 578888888753 3320 1122344678888888874 554333222332 4467777777655
No 86
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.17 E-value=1.3e-13 Score=126.64 Aligned_cols=197 Identities=16% Similarity=0.056 Sum_probs=91.1
Q ss_pred cCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCC
Q 010910 265 GCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCK 344 (497)
Q Consensus 265 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 344 (497)
.+++|++|+++++.+.......+ ..+++|++|+++++. +.. ........+++|+.|+++++. ++......+. .++
T Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~ 173 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNA-LSG-TLPPSISSLPNLVGITFDGNR-ISGAIPDSYG-SFS 173 (313)
T ss_dssp GCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSE-EES-CCCGGGGGCTTCCEEECCSSC-CEEECCGGGG-CCC
T ss_pred cCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCc-cCC-cCChHHhcCCCCCeEECcCCc-ccCcCCHHHh-hhh
Confidence 35555555555544432111111 234556666665432 110 001112235666677666654 2211111222 244
Q ss_pred -CCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCC
Q 010910 345 -ELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 423 (497)
Q Consensus 345 -~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 423 (497)
+|+.|+++++. ++......+ ..++ |++|++++ +.++.... .....+++|+.|+++++ .++.. +.. ...+++
T Consensus 174 ~~L~~L~L~~N~-l~~~~~~~~-~~l~-L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~-~~~-~~~l~~ 245 (313)
T 1ogq_A 174 KLFTSMTISRNR-LTGKIPPTF-ANLN-LAFVDLSR-NMLEGDAS-VLFGSDKNTQKIHLAKN-SLAFD-LGK-VGLSKN 245 (313)
T ss_dssp TTCCEEECCSSE-EEEECCGGG-GGCC-CSEEECCS-SEEEECCG-GGCCTTSCCSEEECCSS-EECCB-GGG-CCCCTT
T ss_pred hcCcEEECcCCe-eeccCChHH-hCCc-ccEEECcC-CcccCcCC-HHHhcCCCCCEEECCCC-ceeee-cCc-ccccCC
Confidence 67777776642 221111111 2233 77777776 34432211 11234677777777765 33211 111 234677
Q ss_pred CcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccc--hhHHhhhhhccccc
Q 010910 424 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGK--FFSPQLHSYSHFHL 477 (497)
Q Consensus 424 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~~~~ 477 (497)
|+.|++++|. ++... ......+++|++|++++| +++. .....+.++..+.+
T Consensus 246 L~~L~Ls~N~-l~~~~-p~~l~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 246 LNGLDLRNNR-IYGTL-PQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp CCEEECCSSC-CEECC-CGGGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGT
T ss_pred CCEEECcCCc-ccCcC-ChHHhcCcCCCEEECcCC-cccccCCCCccccccChHHh
Confidence 7777777764 43221 122246777777777777 3331 11144555555544
No 87
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=3.6e-10 Score=104.79 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=65.4
Q ss_pred CCCCCEEeecCCCCCChhHHHHHHh-hCCCCcEEecCCCC-C-CChH---HHHHHH--hcCCCCcEEeccCCCCCCHHHH
Q 010910 343 CKELTHLEINGCHNIGTMGLESIGK-FCRNLTELALLYCQ-R-IGNL---ALLEVG--RGCKSLQALHLVDCSSIGDDAI 414 (497)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~-~-~~~~---~~~~~~--~~~~~L~~L~l~~~~~~~~~~~ 414 (497)
.++|++|.|..+ .++..++..+.. .+|+|++|+|+.+. . ..+. .+.... ..+|+|+.|.+.+| .+.+...
T Consensus 192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHH
T ss_pred CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHH
Confidence 455666666543 345555555443 35666666553211 0 0110 011111 13567777777664 4444333
Q ss_pred HHHHH--cCCCCcEEecccccccCHHHHHHHH---hhCCCCCeEeecccccccchhHHhhhh
Q 010910 415 CSIAE--GCQNLKKLHIRRCYKIGNNGIVAVG---EHCNSLTELSLRFCDRYGKFFSPQLHS 471 (497)
Q Consensus 415 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~ 471 (497)
..++. .+|+|+.|+++.|. +++.+...+. +++++|+.|++++| .+++.+++.+.+
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~ 329 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQK 329 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHH
T ss_pred HHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHH
Confidence 33332 35667777776653 6666555544 34667777777766 577777776665
No 88
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.08 E-value=9.7e-11 Score=75.05 Aligned_cols=43 Identities=33% Similarity=0.466 Sum_probs=37.4
Q ss_pred cCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeec
Q 010910 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRI 52 (497)
Q Consensus 9 ~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~ 52 (497)
+.||+|++.+||+||+ .+|+.++++|||+|+.+...+..|..+
T Consensus 10 ~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 10 DSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp CSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred HHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4899999999999999 799999999999999998877777654
No 89
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.02 E-value=1.2e-08 Score=85.26 Aligned_cols=127 Identities=18% Similarity=0.270 Sum_probs=86.7
Q ss_pred HHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhh---CCCCcEEecCCCCCCChHHHHHHHh---cCCCCcEEeccCCCC
Q 010910 335 GLEAIATGCKELTHLEINGCHNIGTMGLESIGKF---CRNLTELALLYCQRIGNLALLEVGR---GCKSLQALHLVDCSS 408 (497)
Q Consensus 335 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~ 408 (497)
.+.......++|++|+++++..+++.+...+... .++|++|++++ +.+++.+...+.. ..+.|++|+++++ .
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESN-F 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCC-c
Confidence 3444555567777777777536777666555443 46788888877 5677776655543 3477888888874 7
Q ss_pred CCHHHHHHHHHc---CCCCcEEec--ccccccCHHHHHHHH---hhCCCCCeEeecccccccchh
Q 010910 409 IGDDAICSIAEG---CQNLKKLHI--RRCYKIGNNGIVAVG---EHCNSLTELSLRFCDRYGKFF 465 (497)
Q Consensus 409 ~~~~~~~~~~~~---~~~L~~L~l--~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~ 465 (497)
+++.+...++.. .++|++|++ ++|. +++++...+. ...++|++|++++| .+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 777776666543 567888888 6664 8887755544 45678999999888 677665
No 90
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=1.9e-09 Score=99.90 Aligned_cols=137 Identities=13% Similarity=0.082 Sum_probs=90.3
Q ss_pred CcccCeeeccCCCCCChHHHHHHhh-cCCCCCEEeecCCCC--CCh---hHHHHHH--hhCCCCcEEecCCCCCCChHHH
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIAT-GCKELTHLEINGCHN--IGT---MGLESIG--KFCRNLTELALLYCQRIGNLAL 388 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~--~~~---~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~ 388 (497)
.++|+.|.+..+. +++..+..+.. .+|+|++|+|+.+.+ ..+ ..+..+. ..+|+|+.|++.+ +.+++...
T Consensus 192 ~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~-~~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD-AEEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES-CTTHHHHH
T ss_pred CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC-CCCchHHH
Confidence 5678888777654 66666666653 478888888753111 011 1111111 2368899999987 45665554
Q ss_pred HHHHh--cCCCCcEEeccCCCCCCHHHHHHHHH---cCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc
Q 010910 389 LEVGR--GCKSLQALHLVDCSSIGDDAICSIAE---GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459 (497)
Q Consensus 389 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (497)
..+.. .+|+|+.|+++. +.+++.+...+.. .+++|+.|++++|. +++.++..+.+.+ ...+++++..
T Consensus 270 ~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHHc--CCEEEecCCc
Confidence 45543 468899999976 4788877666653 47899999999885 8998888887645 4557777663
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.01 E-value=2.7e-11 Score=108.83 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=65.8
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (497)
+++|+.|++++|. ++... ......+++|++|+++++ .++... ......+++|++|++++ +.++.... .....++
T Consensus 108 l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~ 181 (272)
T 3rfs_A 108 LTNLKELVLVENQ-LQSLP-DGVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSY-NQLQSLPE-GVFDKLT 181 (272)
T ss_dssp CTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCT
T ss_pred CcCCCEEECCCCc-CCccC-HHHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCC-CCcCccCH-HHhcCCc
Confidence 4556666666543 22111 111234667777777664 333211 11123357777777777 34443221 1123467
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+|+.|+++++ .++... ......+++|+.|++++|+ +. ..|++|+.|++.++
T Consensus 182 ~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-~~--------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 182 QLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNP-WD--------CTCPGIRYLSEWIN 232 (272)
T ss_dssp TCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC-BC--------CCTTTTHHHHHHHH
T ss_pred cCCEEECCCC-cCCccC-HHHHhCCcCCCEEEccCCC-cc--------ccCcHHHHHHHHHH
Confidence 7778877775 333211 1222357788888888775 33 24667777777665
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.99 E-value=4.1e-10 Score=95.69 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=72.8
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (497)
+++|+.|++++|. +.+. .. ...+++|++|+++++ .++......+ ..+++|++|++++ +.+++.....+ ..++
T Consensus 65 l~~L~~L~l~~n~-~~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~-n~i~~~~~~~l-~~l~ 136 (197)
T 4ezg_A 65 AHNIKDLTINNIH-ATNY--NP-ISGLSNLERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISH-SAHDDSILTKI-NTLP 136 (197)
T ss_dssp CTTCSEEEEESCC-CSCC--GG-GTTCTTCCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCS-SBCBGGGHHHH-TTCS
T ss_pred CCCCCEEEccCCC-CCcc--hh-hhcCCCCCEEEeECC-ccCcccChhh-cCCCCCCEEEecC-CccCcHhHHHH-hhCC
Confidence 4555555555542 2221 12 223667777777663 3433222222 2357777777777 45665444433 3477
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+|+.|++++|..+++.. . ...+++|+.|++++|. +++.. ....+++|++|+++++
T Consensus 137 ~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC
T ss_pred CCCEEEccCCCCccccH--h-hcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCc
Confidence 78888877764344422 2 3457788888888775 55422 2357788888888777
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.97 E-value=1.2e-09 Score=99.01 Aligned_cols=79 Identities=23% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 010910 343 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQ 422 (497)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 422 (497)
+++|+.|+++++. ++.. .....+++|++|++++ +.+++... ...+++|+.|+++++ .+++. .. ...++
T Consensus 133 l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~-N~l~~~~~---l~~l~~L~~L~L~~N-~i~~l--~~-l~~l~ 200 (291)
T 1h6t_A 133 LPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLED-NQISDIVP---LAGLTKLQNLYLSKN-HISDL--RA-LAGLK 200 (291)
T ss_dssp CTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCS-SCCCCCGG---GTTCTTCCEEECCSS-CCCBC--GG-GTTCT
T ss_pred CCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccC-Cccccchh---hcCCCccCEEECCCC-cCCCC--hh-hccCC
Confidence 5555566555532 2221 1122345566666655 33433221 233555555555553 33321 11 22355
Q ss_pred CCcEEeccccc
Q 010910 423 NLKKLHIRRCY 433 (497)
Q Consensus 423 ~L~~L~l~~~~ 433 (497)
+|+.|++++|+
T Consensus 201 ~L~~L~l~~n~ 211 (291)
T 1h6t_A 201 NLDVLELFSQE 211 (291)
T ss_dssp TCSEEEEEEEE
T ss_pred CCCEEECcCCc
Confidence 56666665553
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.95 E-value=8.4e-12 Score=112.55 Aligned_cols=203 Identities=19% Similarity=0.077 Sum_probs=89.8
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++|++|+++++. +...... ....+++|++|+++++.+..... ..+..+++|++|+++++.+.......+ ..
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~----- 98 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSY-SFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAF-SG----- 98 (276)
T ss_dssp TTCCEEECTTCC-CCEECTT-TTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTT-TT-----
T ss_pred CCccEEECCCCc-ccccCHh-HhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhh-cC-----
Confidence 467777777653 2221111 12356677777777665543221 112345666666666555433211111 12
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (497)
+++|+.|+++++. +....... ...+++|++|+++++. +....+......+++|++|
T Consensus 99 ---------------------l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 99 ---------------------LSSLQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp ---------------------CTTCCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEE
T ss_pred ---------------------CccccEEECCCCC-ccccCchh-cccCCCCCEEECcCCc-cceecCchhhccCCCCCEE
Confidence 3445555544432 11110000 1235566666665532 2221111122335666666
Q ss_pred ecCCCCCCChH---HHHHHHhcCCCCc-EEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCC
Q 010910 376 ALLYCQRIGNL---ALLEVGRGCKSLQ-ALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLT 451 (497)
Q Consensus 376 ~l~~~~~~~~~---~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 451 (497)
++++ +.++.. .+..+ ..++.|. .|+++++ .++..... .....+|+.|++++|. ++.... .....+++|+
T Consensus 155 ~Ls~-N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n-~l~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~ 227 (276)
T 2z62_A 155 DLSS-NKIQSIYCTDLRVL-HQMPLLNLSLDLSLN-PMNFIQPG--AFKEIRLKELALDTNQ-LKSVPD-GIFDRLTSLQ 227 (276)
T ss_dssp ECCS-SCCCEECGGGGHHH-HTCTTCCEEEECCSS-CCCEECTT--SSCSCCEEEEECCSSC-CSCCCT-TTTTTCCSCC
T ss_pred ECCC-CCCCcCCHHHhhhh-hhccccceeeecCCC-cccccCcc--ccCCCcccEEECCCCc-eeecCH-hHhccccccc
Confidence 6665 333321 22221 1233333 5666653 33321110 0123367777777664 442211 1224567777
Q ss_pred eEeeccc
Q 010910 452 ELSLRFC 458 (497)
Q Consensus 452 ~L~l~~~ 458 (497)
.|+++++
T Consensus 228 ~L~l~~N 234 (276)
T 2z62_A 228 KIWLHTN 234 (276)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 7777766
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.94 E-value=8.9e-10 Score=93.56 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=40.8
Q ss_pred CCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 010910 343 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQ 422 (497)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 422 (497)
+++|++|+++++ .++......+ ..+++|++|++++|..+++.. ....+++|+.|++++| .+++.. ....++
T Consensus 111 l~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~ 181 (197)
T 4ezg_A 111 LTSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR---GIEDFP 181 (197)
T ss_dssp CTTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT---TGGGCS
T ss_pred CCCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH---HhccCC
Confidence 555666666553 3333333322 235666666666533244332 1234666666666664 333311 123467
Q ss_pred CCcEEeccccc
Q 010910 423 NLKKLHIRRCY 433 (497)
Q Consensus 423 ~L~~L~l~~~~ 433 (497)
+|+.|+++++.
T Consensus 182 ~L~~L~l~~N~ 192 (197)
T 4ezg_A 182 KLNQLYAFSQT 192 (197)
T ss_dssp SCCEEEECBC-
T ss_pred CCCEEEeeCcc
Confidence 77777777664
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.94 E-value=1.6e-09 Score=98.01 Aligned_cols=166 Identities=26% Similarity=0.181 Sum_probs=79.1
Q ss_pred CCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhccc
Q 010910 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (497)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 216 (497)
+++|+.|+++++. +... .. +..+++|++|++++|.+..... ...+++|++|+++++.-.....
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~---------- 107 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSS---------- 107 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGG----------
T ss_pred cCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChh----------
Confidence 3556666666542 2221 11 2345666666666665443222 2244556666665543111110
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCce
Q 010910 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (497)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (497)
...+++|++|++++|.+... ..+..+++|+.|+++++.+... .....+++|+.
T Consensus 108 ---------------------l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~ 160 (291)
T 1h6t_A 108 ---------------------LKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDT 160 (291)
T ss_dssp ---------------------GTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSE
T ss_pred ---------------------hccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCE
Confidence 12344555555554444332 1123345555555555444432 11223556666
Q ss_pred eecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCC
Q 010910 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (497)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 354 (497)
|+++++. +.... . ...+++|+.|++++|. +++. .. ...+++|+.|+++++
T Consensus 161 L~L~~N~-l~~~~--~-l~~l~~L~~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 161 LSLEDNQ-ISDIV--P-LAGLTKLQNLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp EECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCBC--GG-GTTCTTCSEEEEEEE
T ss_pred EEccCCc-cccch--h-hcCCCccCEEECCCCc-CCCC--hh-hccCCCCCEEECcCC
Confidence 6665542 22111 1 3346777777777764 4432 22 334778888888764
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.90 E-value=1.3e-09 Score=108.66 Aligned_cols=168 Identities=24% Similarity=0.192 Sum_probs=83.9
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcc
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 319 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 319 (497)
.+++|+.|+++++.+.... -+..+++|+.|+|+++.+..... ...+++|+.|+++++. +.. +. ....+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~--l~-~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK-IKD--LS-SLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCC--CT-TSTTCTT
T ss_pred cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCC-CCC--Ch-hhccCCC
Confidence 5678888888887665432 23567888888887776654221 3356677777776643 221 11 1223556
Q ss_pred cCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCc
Q 010910 320 LKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQ 399 (497)
Q Consensus 320 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 399 (497)
|+.|++++|. +.+ +.. ...+++|+.|+|+++. ++.. .....+++|+.|++++ +.+.+... ...+++|+
T Consensus 111 L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~-N~l~~~~~---l~~l~~L~ 178 (605)
T 1m9s_A 111 LKSLSLEHNG-ISD--ING-LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLED-NQISDIVP---LAGLTKLQ 178 (605)
T ss_dssp CCEEECTTSC-CCC--CGG-GGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCS-SCCCCCGG---GTTCTTCC
T ss_pred CCEEEecCCC-CCC--Ccc-ccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcC-CcCCCchh---hccCCCCC
Confidence 6666666554 222 111 2235556666665532 2221 1122345555555555 23333211 23355555
Q ss_pred EEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 400 ALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 400 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
.|++++| .+++. .. ...+++|+.|++++|+
T Consensus 179 ~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 179 NLYLSKN-HISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSS-CCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred EEECcCC-CCCCC--hH-HccCCCCCEEEccCCc
Confidence 5555553 33321 11 1235555555555553
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.88 E-value=1.8e-10 Score=103.43 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=60.7
Q ss_pred cCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcC
Q 010910 316 GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGC 395 (497)
Q Consensus 316 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 395 (497)
.+++|+.|++++|. ++.... .....+++|+.|+++++. ++... ......+++|++|++++ +.++.... .....+
T Consensus 131 ~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l 204 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQ-LQSLPK-GVFDKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQLKDLRLYQ-NQLKSVPD-GVFDRL 204 (272)
T ss_dssp TCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCS-SCCSCCCT-TTTTTC
T ss_pred cCCCCCEEECCCCc-cCccCH-HHhccCccCCEEECCCCC-cCccC-HHHhcCCccCCEEECCC-CcCCccCH-HHHhCC
Confidence 35677777777764 332111 122347788888888753 43222 11223468888888887 45554322 223457
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
++|+.|++++++.. ..+|+|+.|+++.+.
T Consensus 205 ~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 205 TSLQYIWLHDNPWD---------CTCPGIRYLSEWINK 233 (272)
T ss_dssp TTCCEEECCSSCBC---------CCTTTTHHHHHHHHH
T ss_pred cCCCEEEccCCCcc---------ccCcHHHHHHHHHHh
Confidence 89999999886432 236777777766553
No 99
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.88 E-value=5.1e-11 Score=107.39 Aligned_cols=204 Identities=18% Similarity=0.169 Sum_probs=113.9
Q ss_pred CCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCC
Q 010910 189 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 268 (497)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 268 (497)
++|++|+++++. +....... +.. .++|++|+++++. +...... ....+++|++|+++++.+...... .+..+++
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~-~~~-l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYS-FFS-FPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLALG-AFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTT-TTT-CTTCSEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECTT-TTTTCTT
T ss_pred CCccEEECCCCc-ccccCHhH-hcc-ccCCcEEECCCCc-CCccCHH-HccCCcCCCEEECCCCccCccChh-hhcCCcc
Confidence 579999999874 32211111 112 2799999999874 3322211 124689999999999887654322 2356899
Q ss_pred CcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCE
Q 010910 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348 (497)
Q Consensus 269 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 348 (497)
|++|++.++.+....... ... +++|+.|+++++. +....+......+++|++
T Consensus 102 L~~L~l~~n~l~~~~~~~-~~~--------------------------l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 102 LQKLVAVETNLASLENFP-IGH--------------------------LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp CCEEECTTSCCCCSTTCC-CTT--------------------------CTTCCEEECCSSC-CCCCCCCGGGGGCTTCCE
T ss_pred ccEEECCCCCccccCchh-ccc--------------------------CCCCCEEECcCCc-cceecCchhhccCCCCCE
Confidence 999999877664311000 112 4555555555543 222111122334677777
Q ss_pred EeecCCCCCCh---hHHHHHHhhCCCCc-EEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCC
Q 010910 349 LEINGCHNIGT---MGLESIGKFCRNLT-ELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNL 424 (497)
Q Consensus 349 L~l~~~~~~~~---~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 424 (497)
|+++++. ++. ..+..+. .++.|. +|++++ +.++...... ....+|+.|+++++ .++... ......+++|
T Consensus 154 L~Ls~N~-l~~~~~~~~~~l~-~L~~l~l~L~ls~-n~l~~~~~~~--~~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L 226 (276)
T 2z62_A 154 LDLSSNK-IQSIYCTDLRVLH-QMPLLNLSLDLSL-NPMNFIQPGA--FKEIRLKELALDTN-QLKSVP-DGIFDRLTSL 226 (276)
T ss_dssp EECCSSC-CCEECGGGGHHHH-TCTTCCEEEECCS-SCCCEECTTS--SCSCCEEEEECCSS-CCSCCC-TTTTTTCCSC
T ss_pred EECCCCC-CCcCCHHHhhhhh-hccccceeeecCC-CcccccCccc--cCCCcccEEECCCC-ceeecC-HhHhcccccc
Confidence 7777643 322 2222221 233333 777777 4554322111 12347888888875 344321 1222458889
Q ss_pred cEEeccccc
Q 010910 425 KKLHIRRCY 433 (497)
Q Consensus 425 ~~L~l~~~~ 433 (497)
+.|++++++
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 999999876
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.86 E-value=1.3e-09 Score=88.00 Aligned_cols=130 Identities=22% Similarity=0.212 Sum_probs=69.6
Q ss_pred cccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 010910 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKS 397 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 397 (497)
++|+.|+++++. +++..+......+++|+.|+++++ .++.. .....+++|++|++++ +.++.. +......+++
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~-n~i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSD-NRVSGG-LEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCS-SCCCSC-THHHHHHCTT
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCC-Ccccch-HHHHhhhCCC
Confidence 456666666654 331122222334667777777664 33332 2223356777777776 445442 2233334677
Q ss_pred CcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHH--HHHHhhCCCCCeEeec
Q 010910 398 LQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGI--VAVGEHCNSLTELSLR 456 (497)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~ 456 (497)
|+.|+++++ .+++.........+++|+.|++++|. ++.... ......+++|+.|+++
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 777777764 45443222333457777777777774 443221 1234567777777764
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=3.6e-09 Score=105.38 Aligned_cols=166 Identities=22% Similarity=0.086 Sum_probs=82.4
Q ss_pred CCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhccc
Q 010910 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (497)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 216 (497)
+++|+.|+++++. +.... . +..+++|+.|+|++|.+..... ...+++|+.|+++++....... +.. ++
T Consensus 42 L~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----l~~-l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSS----LKD-LK 109 (605)
T ss_dssp HTTCCCCBCTTCC-CCCCT--T-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTT----STT-CT
T ss_pred CCCCCEEECcCCC-CCCCh--H-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChh----hcc-CC
Confidence 4667777766643 32211 1 3456777777777776544322 2355677777777663211111 111 25
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCce
Q 010910 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (497)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~ 296 (497)
+|+.|+++++...... . ...+++|+.|++++|.+... ..+..+++|+.|+|+++.+..... ...+++|+.
T Consensus 110 ~L~~L~Ls~N~l~~l~---~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~ 179 (605)
T 1m9s_A 110 KLKSLSLEHNGISDIN---G-LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN 179 (605)
T ss_dssp TCCEEECTTSCCCCCG---G-GGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred CCCEEEecCCCCCCCc---c-ccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCE
Confidence 6666666665322211 1 23566666666666655443 223445666666666555543221 234556666
Q ss_pred eecccccCCCHHHHHHHhccCcccCeeeccCC
Q 010910 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC 328 (497)
Q Consensus 297 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 328 (497)
|+++++. +... .. +..+++|+.|++++|
T Consensus 180 L~Ls~N~-i~~l--~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 180 LYLSKNH-ISDL--RA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp EECCSSC-CCBC--GG-GTTCTTCSEEECCSE
T ss_pred EECcCCC-CCCC--hH-HccCCCCCEEEccCC
Confidence 6665542 2211 11 223555555555554
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.82 E-value=4.1e-11 Score=105.45 Aligned_cols=129 Identities=16% Similarity=-0.008 Sum_probs=62.8
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCC---EEeecCCCCCChhHHHHHHhhCCCCc-EEecCCCCCCChHHHHHHH
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELT---HLEINGCHNIGTMGLESIGKFCRNLT-ELALLYCQRIGNLALLEVG 392 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~ 392 (497)
+++|+.|+++++. ++. +.. ...+++|+ .|+++++..++..... ....+++|+ +|++++ +.++.... ...
T Consensus 104 l~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~-n~l~~i~~-~~~ 176 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYN-NGFTSVQG-YAF 176 (239)
T ss_dssp CTTCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCS-CCCCEECT-TTT
T ss_pred CCCCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCC-CCCcccCH-hhc
Confidence 4556666665543 221 111 22355555 6777664233322111 112356777 777766 34442211 111
Q ss_pred hcCCCCcEEeccCCCCCCHHHHHHHHHcC-CCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc
Q 010910 393 RGCKSLQALHLVDCSSIGDDAICSIAEGC-QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459 (497)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (497)
. .++|+.|+++++..++..... ....+ ++|+.|+++++. ++.... ..+++|+.|++.+++
T Consensus 177 ~-~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~-l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 N-GTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTS-VTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp T-TCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCC-CCCCCC----TTCTTCSEEECTTC-
T ss_pred C-CCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCc-cccCCh----hHhccCceeeccCcc
Confidence 2 256777777765334322111 12345 777777777764 442111 146677777777664
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.81 E-value=1.7e-10 Score=103.48 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=40.4
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
.+.+.+++++.. ++..+. ...+++++|+++++.+..... ..+..+++|++|+++++.+..-. ......+++|+
T Consensus 16 ~~~~~l~~~~~~-l~~ip~----~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~ 88 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPS----NIPADTKKLDLQSNKLSSLPS-KAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLE 88 (270)
T ss_dssp TTTTEEECTTSC-CSSCCS----CCCTTCSEEECCSSCCSCCCT-TSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCC
T ss_pred CCCCEEEccCCC-CCccCC----CCCCCCCEEECcCCCCCeeCH-HHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCC
Confidence 456777777643 221110 112468888888776653321 12245677777777766554211 11112345555
Q ss_pred eeeccc
Q 010910 296 LLALYS 301 (497)
Q Consensus 296 ~L~l~~ 301 (497)
+|++++
T Consensus 89 ~L~l~~ 94 (270)
T 2o6q_A 89 TLWVTD 94 (270)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555554
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.80 E-value=3.6e-10 Score=102.24 Aligned_cols=197 Identities=19% Similarity=0.140 Sum_probs=93.9
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
++++.+++.++. ++.... ...++++.|+++++.+...... .+..+++|++|+++++.+...... ..+++|+
T Consensus 10 ~~l~~l~~~~~~-l~~ip~----~~~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L~ 80 (290)
T 1p9a_G 10 ASHLEVNCDKRN-LTALPP----DLPKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD---GTLPVLG 80 (290)
T ss_dssp TTCCEEECTTSC-CSSCCS----CCCTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC---SCCTTCC
T ss_pred CCccEEECCCCC-CCcCCC----CCCCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC---CCCCcCC
Confidence 678888887743 221110 1235788888888776543322 234578888888877766542111 3456677
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (497)
.|+++++. +. .+......+++|+.|+++++. ++.... .....+++|+.|+++++ .++.... .....+++|+.|
T Consensus 81 ~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N~-l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L 153 (290)
T 1p9a_G 81 TLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFNR-LTSLPL-GALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKL 153 (290)
T ss_dssp EEECCSSC-CS--SCCCCTTTCTTCCEEECCSSC-CCCCCS-STTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEE
T ss_pred EEECCCCc-CC--cCchhhccCCCCCEEECCCCc-CcccCH-HHHcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEE
Confidence 77776542 21 111112235566666666553 221111 11223556666666653 2221111 111224566666
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
++++ +.++.... .....+++|+.|+++++ .++. ++.-....++|+.|++.+++
T Consensus 154 ~L~~-N~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 154 SLAN-NNLTELPA-GLLNGLENLDTLLLQEN-SLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ECTT-SCCSCCCT-TTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred ECCC-CcCCccCH-HHhcCcCCCCEEECCCC-cCCc--cChhhcccccCCeEEeCCCC
Confidence 6655 33432111 11223455666666553 2221 11111224455555555544
No 105
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=3.3e-07 Score=76.48 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=89.9
Q ss_pred HHHHHhccCcccCeeeccCCCCCChHHHHHHhh---cCCCCCEEeecCCCCCChhHHHHHHh---hCCCCcEEecCCCCC
Q 010910 309 GLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT---GCKELTHLEINGCHNIGTMGLESIGK---FCRNLTELALLYCQR 382 (497)
Q Consensus 309 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~ 382 (497)
.+.......++|++|++++|..+++.+...+.. ..++|++|+|+++ .+++.+...++. ..++|++|++++ +.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NF 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-Cc
Confidence 445555557778888887763477766655543 3577888888884 577777655543 357899999988 68
Q ss_pred CChHHHHHHHhc---CCCCcEEec--cCCCCCCHHHHHHHHH---cCCCCcEEecccccccCHHH
Q 010910 383 IGNLALLEVGRG---CKSLQALHL--VDCSSIGDDAICSIAE---GCQNLKKLHIRRCYKIGNNG 439 (497)
Q Consensus 383 ~~~~~~~~~~~~---~~~L~~L~l--~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~ 439 (497)
+++.+...+... .+.|++|++ ++ ..+++.+...+.. ..++|++|++++|. +++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 888887776653 478999999 55 4788877655543 46889999999885 76655
No 106
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.76 E-value=3.3e-10 Score=101.58 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=40.0
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCC
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (497)
++++.|+++++. +...... ....+++|++|+++++.+.... ...+..+++|++|+++++.+.
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSK-AFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTT-SSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCC
T ss_pred CCCCEEECcCCC-CCeeCHH-HhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCC
Confidence 578999998864 2221111 1246788999999887765322 222355788999999877664
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.72 E-value=4.9e-09 Score=84.52 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=18.7
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVG 177 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (497)
++++.|+++++. ++...+...+..+++|++|++++|.+.
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~ 55 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLT 55 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCC
Confidence 456666666542 331122222334556666666655543
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.72 E-value=1e-09 Score=99.25 Aligned_cols=203 Identities=19% Similarity=0.152 Sum_probs=118.4
Q ss_pred hCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcC
Q 010910 187 VCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGC 266 (497)
Q Consensus 187 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 266 (497)
.+++++++++.++. +.. +.....++++.|+++++. +...... ....+++|++|+++++.+...... ..+
T Consensus 8 ~l~~l~~l~~~~~~-l~~-----ip~~~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~---~~l 76 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTA-----LPPDLPKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD---GTL 76 (290)
T ss_dssp CSTTCCEEECTTSC-CSS-----CCSCCCTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTSCCCEEECC---SCC
T ss_pred ccCCccEEECCCCC-CCc-----CCCCCCCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCCccCcccCC---CCC
Confidence 34678888887653 221 111123678888888864 3222111 224678888998888776643221 467
Q ss_pred CCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCC
Q 010910 267 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 346 (497)
Q Consensus 267 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 346 (497)
++|+.|+++++.+.. +......+++|+.|+++++. ++... ......+++|+.|+++++. ++... ......+++|
T Consensus 77 ~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L 150 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKL 150 (290)
T ss_dssp TTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTC
T ss_pred CcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCc-CcccC-HHHHcCCCCCCEEECCCCC-CCccC-hhhcccccCC
Confidence 888888888777652 11222356788888887753 22110 1122346788888888865 33221 1222347888
Q ss_pred CEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCH
Q 010910 347 THLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGD 411 (497)
Q Consensus 347 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (497)
+.|+++++ .++.... .....+++|+.|++++ +.++... .-....++|+.+.+.+++...+
T Consensus 151 ~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~-N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 151 EKLSLANN-NLTELPA-GLLNGLENLDTLLLQE-NSLYTIP--KGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CEEECTTS-CCSCCCT-TTTTTCTTCCEEECCS-SCCCCCC--TTTTTTCCCSEEECCSCCBCCS
T ss_pred CEEECCCC-cCCccCH-HHhcCcCCCCEEECCC-CcCCccC--hhhcccccCCeEEeCCCCccCc
Confidence 88888874 3432211 1223468888888887 5555321 1112357888888887654433
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.72 E-value=1.1e-09 Score=90.32 Aligned_cols=133 Identities=20% Similarity=0.142 Sum_probs=74.1
Q ss_pred cccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 010910 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKS 397 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 397 (497)
++|+.|++++|. +++..+......+++|+.|+++++. ++.. .....+++|++|++++ +.+... +......+++
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSE-NRIFGG-LDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEES-CCCCSC-CCHHHHHCTT
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcC-CcCchH-HHHHHhhCCC
Confidence 456666666654 3311222223346677777777643 3332 2223357777777777 344442 2223334777
Q ss_pred CcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHH--HHHHhhCCCCCeEeecccc
Q 010910 398 LQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGI--VAVGEHCNSLTELSLRFCD 459 (497)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~ 459 (497)
|+.|+++++ .+++.........+++|+.|++++|. ++.... ......+++|++|++++|.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 888887775 44432111222357888888888875 443221 2344578888888888883
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.68 E-value=1.9e-10 Score=101.19 Aligned_cols=35 Identities=9% Similarity=0.014 Sum_probs=15.9
Q ss_pred CCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcc
Q 010910 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY 175 (497)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 175 (497)
+++.|+++++. ++.... ..+..+++|++|+++++.
T Consensus 32 ~l~~L~l~~n~-l~~i~~-~~~~~l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPS-HAFSNLPNISRIYVSIDV 66 (239)
T ss_dssp TCCEEEEESCC-CSEECT-TTTTTCTTCCEEEEECCS
T ss_pred cccEEEEeCCc-ceEECH-HHccCCCCCcEEeCCCCC
Confidence 56666665532 322111 112345556666666553
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.62 E-value=3.9e-08 Score=87.41 Aligned_cols=125 Identities=23% Similarity=0.197 Sum_probs=63.4
Q ss_pred CCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhccc
Q 010910 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (497)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 216 (497)
+++|+.|+++++. ++... -+..+++|++|++++|.+.+... ...+++|++|+++++. +... ..+. . +
T Consensus 40 l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~l--~~~~--~-~ 106 (263)
T 1xeu_A 40 LSGVQNFNGDNSN-IQSLA---GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKNL--NGIP--S-A 106 (263)
T ss_dssp HTTCSEEECTTSC-CCCCT---TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSCC--TTCC--C-S
T ss_pred cCcCcEEECcCCC-cccch---HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCCc--Cccc--c-C
Confidence 5677777777653 33222 23456777777777776554332 3355677777777663 2110 0000 0 4
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCCh
Q 010910 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD 281 (497)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 281 (497)
+|+.|+++++. +... . ....+++|++|++++|.+.+.. .+..+++|+.|+++++.+.+
T Consensus 107 ~L~~L~L~~N~-l~~~--~-~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 107 CLSRLFLDNNE-LRDT--D-SLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SCCEEECCSSC-CSBS--G-GGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCB
T ss_pred cccEEEccCCc-cCCC--h-hhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcc
Confidence 56666666543 2211 1 1234556666666655554331 23345555555555554443
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.59 E-value=6.5e-09 Score=85.72 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=18.8
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVG 177 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (497)
++|+.|+++++. ++...+...+..+++|++|++++|.+.
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~ 62 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLI 62 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCC
Confidence 556666666542 331122222334556666666665543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=7.2e-08 Score=85.71 Aligned_cols=13 Identities=0% Similarity=0.008 Sum_probs=6.5
Q ss_pred CCCCcEEeccccc
Q 010910 421 CQNLKKLHIRRCY 433 (497)
Q Consensus 421 ~~~L~~L~l~~~~ 433 (497)
+++|+.|++++++
T Consensus 171 l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 171 LKKVNWIDLTGQK 183 (263)
T ss_dssp CCCCCEEEEEEEE
T ss_pred CCCCCEEeCCCCc
Confidence 4455555555443
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.46 E-value=1.2e-08 Score=90.27 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=102.9
Q ss_pred CCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCC
Q 010910 292 LSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 371 (497)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 371 (497)
++++.|+++++. +..... .....+++|+.|+++++. ++.... .....+++|++|+++++ .++.... .....+++
T Consensus 35 ~~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSD-ATFRGLTKLTWLNLDYNQ-LQTLSA-GVFDDLTELGTLGLANN-QLASLPL-GVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred CCCCEEEccCCC-cCccCH-hHhcCcccCCEEECCCCc-CCccCH-hHhccCCcCCEEECCCC-cccccCh-hHhcccCC
Confidence 689999998763 321111 122347999999999975 443222 22345899999999985 3443221 22345799
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCC
Q 010910 372 LTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLT 451 (497)
Q Consensus 372 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 451 (497)
|++|++++ +.++.... .....+++|+.|+++++ .++.... .....+++|+.|++++|. ++..... ....+++|+
T Consensus 109 L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~ 182 (251)
T 3m19_A 109 LDKLYLGG-NQLKSLPS-GVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPHG-AFDRLGKLQ 182 (251)
T ss_dssp CCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCC
T ss_pred CCEEEcCC-CcCCCcCh-hHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCCc-CCccCHH-HHhCCCCCC
Confidence 99999998 56654322 12245899999999986 5543221 122458999999999985 5532222 235789999
Q ss_pred eEeeccccccc
Q 010910 452 ELSLRFCDRYG 462 (497)
Q Consensus 452 ~L~l~~~~~l~ 462 (497)
.|++++| .++
T Consensus 183 ~L~l~~N-~~~ 192 (251)
T 3m19_A 183 TITLFGN-QFD 192 (251)
T ss_dssp EEECCSC-CBC
T ss_pred EEEeeCC-cee
Confidence 9999999 444
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=4.1e-09 Score=104.29 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=52.9
Q ss_pred CCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCC
Q 010910 345 ELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNL 424 (497)
Q Consensus 345 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 424 (497)
.|+.|+++++ .++.. .. ...+++|+.|++++ +.++. +......+++|+.|+++++ .++. ++. ...+++|
T Consensus 442 ~L~~L~Ls~n-~l~~l--p~-~~~l~~L~~L~Ls~-N~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~-l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVL--CH-LEQLLLVTHLDLSH-NRLRA--LPPALAALRCLEVLQASDN-ALEN--VDG-VANLPRL 510 (567)
T ss_dssp TCSEEECTTS-CCSSC--CC-GGGGTTCCEEECCS-SCCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGG-GTTCSSC
T ss_pred CceEEEecCC-CCCCC--cC-ccccccCcEeecCc-ccccc--cchhhhcCCCCCEEECCCC-CCCC--Ccc-cCCCCCC
Confidence 4666666663 33221 12 23356677777766 44442 1112234667777777664 3432 222 2346677
Q ss_pred cEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 425 KKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 425 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+.|++++|. ++..........+++|+.|++++|
T Consensus 511 ~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 511 QELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred cEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC
Confidence 777777664 443210222246667777777666
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=1.9e-08 Score=92.95 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccC
Q 010910 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVG 177 (497)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (497)
.++++.|.+.+ .+...++..+...+++|+.|+|+++.+.
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIK 62 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEEC
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeE
Confidence 35789999987 3666777777666899999999998865
No 117
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.40 E-value=3.2e-08 Score=87.49 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=28.9
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
+++|++|++++ +.++..... ....+++|+.|+++++ .++.... .....+++|+.|++++|+
T Consensus 130 l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 130 LTKLKELRLNT-NQLQSIPAG-AFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CCcccEEECcC-CcCCccCHH-HcCcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 45566666655 334322111 1123566666666654 3322111 112346677777777665
No 118
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.39 E-value=7.3e-06 Score=67.79 Aligned_cols=123 Identities=13% Similarity=0.208 Sum_probs=81.8
Q ss_pred HHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhh---CCCCcEEecCCCCCCChHHHHHHHh---cCCCCcEEeccCCC
Q 010910 334 MGLEAIATGCKELTHLEINGCHNIGTMGLESIGKF---CRNLTELALLYCQRIGNLALLEVGR---GCKSLQALHLVDCS 407 (497)
Q Consensus 334 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 407 (497)
+.+..+...-+.|++|+|++++.+.+++...++.. -+.|+.|+|++ +.+++.+...+.+ .-+.|+.|++++ +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 34555555567778888876546777776666544 35788888877 5777776655543 347788888887 4
Q ss_pred CCCHHHHHHHHHcC---CCCcEEeccccc--ccCHHHHHHH---HhhCCCCCeEeeccc
Q 010910 408 SIGDDAICSIAEGC---QNLKKLHIRRCY--KIGNNGIVAV---GEHCNSLTELSLRFC 458 (497)
Q Consensus 408 ~~~~~~~~~~~~~~---~~L~~L~l~~~~--~~~~~~~~~~---~~~~~~L~~L~l~~~ 458 (497)
.+++.+...++..+ +.|++|+++++. .+++.+...+ .+.-+.|+.|++..+
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 77888777777654 468888887542 3666554333 356678888888765
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.39 E-value=1.1e-07 Score=93.76 Aligned_cols=186 Identities=11% Similarity=0.028 Sum_probs=99.8
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCc
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 295 (497)
.+|+.|+++++. +... .. ..+++|++|++++|.+..-. ..+++|+.|+++++.+.. +..+ ..+|+
T Consensus 59 ~~L~~L~Ls~n~-L~~l--p~--~l~~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~--ip~l---~~~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSL--PD--NLPPQITVLEITQNALISLP-----ELPASLEYLDACDNRLST--LPEL---PASLK 123 (571)
T ss_dssp TTCSEEECCSSC-CSCC--CS--CCCTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSC--CCCC---CTTCC
T ss_pred CCccEEEeCCCC-CCcc--CH--hHcCCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCC--cchh---hcCCC
Confidence 489999998864 3221 10 12468999999988776322 457888899888877764 1111 12778
Q ss_pred eeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEE
Q 010910 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (497)
Q Consensus 296 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (497)
+|+++++. ++. +.. .+++|+.|++++|. ++. +. ..+++|+.|+++++. ++.. ..+ .++|+.|
T Consensus 124 ~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~-L~~l--p~l---~~~L~~L 185 (571)
T 3cvr_A 124 HLDVDNNQ-LTM--LPE---LPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNNQ-LTFL--PEL---PESLEAL 185 (571)
T ss_dssp EEECCSSC-CSC--CCC---CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSCC--CCC---CTTCCEE
T ss_pred EEECCCCc-CCC--CCC---cCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCCC-CCCc--chh---hCCCCEE
Confidence 88887653 221 111 36677777777764 332 11 135677777777643 3321 111 1677777
Q ss_pred ecCCCCCCChHHH-H-HHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHH
Q 010910 376 ALLYCQRIGNLAL-L-EVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNG 439 (497)
Q Consensus 376 ~l~~~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 439 (497)
++++ +.++.... . .+....+.|+.|+++++ .++. ++.-...+++|+.|++++|+ ++...
T Consensus 186 ~Ls~-N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~L~~N~-l~~~~ 246 (571)
T 3cvr_A 186 DVST-NLLESLPAVPVRNHHSEETEIFFRCREN-RITH--IPENILSLDPTCTIILEDNP-LSSRI 246 (571)
T ss_dssp ECCS-SCCSSCCCCC--------CCEEEECCSS-CCCC--CCGGGGGSCTTEEEECCSSS-CCHHH
T ss_pred ECcC-CCCCchhhHHHhhhcccccceEEecCCC-ccee--cCHHHhcCCCCCEEEeeCCc-CCCcC
Confidence 7776 44442111 0 00011122266666664 3332 22212236666666666664 55433
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.36 E-value=1.6e-07 Score=77.97 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=67.7
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (497)
+++|+.|+++++. ++. +..+....++|+.|+++++ .++.. . ....+++|++|++++ +.++.... .+...++
T Consensus 18 ~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~-~l~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDN-EIRKL--D-GFPLLRRLKTLLVNN-NRICRIGE-GLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSS-CCCEE--C-CCCCCSSCCEEECCS-SCCCEECS-CHHHHCT
T ss_pred cCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCC-CCCcc--c-ccccCCCCCEEECCC-CcccccCc-chhhcCC
Confidence 3455555555543 221 1223332346666666663 33321 1 122356777777776 44543211 1223467
Q ss_pred CCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHH--HHHHHHhhCCCCCeEeeccc
Q 010910 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNN--GIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 458 (497)
+|+.|+++++ .+++.........+++|+.|++++|+ ++.. ........+++|+.|+++++
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7777777765 34331111122357778888887775 4321 11123457788888888777
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.32 E-value=3.7e-07 Score=89.96 Aligned_cols=190 Identities=17% Similarity=0.103 Sum_probs=118.8
Q ss_pred CCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCC
Q 010910 189 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 268 (497)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 268 (497)
.+|+.|+++++. +.. +.....++|+.|+++++. +...+ ..+++|++|++++|.+... .. + ..+
T Consensus 59 ~~L~~L~Ls~n~-L~~-----lp~~l~~~L~~L~Ls~N~-l~~ip-----~~l~~L~~L~Ls~N~l~~i--p~-l--~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS-----LPDNLPPQITVLEITQNA-LISLP-----ELPASLEYLDACDNRLSTL--PE-L--PAS 121 (571)
T ss_dssp TTCSEEECCSSC-CSC-----CCSCCCTTCSEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSCC--CC-C--CTT
T ss_pred CCccEEEeCCCC-CCc-----cCHhHcCCCCEEECcCCC-Ccccc-----cccCCCCEEEccCCCCCCc--ch-h--hcC
Confidence 589999999874 322 111113689999999864 33221 3578999999999877652 12 2 238
Q ss_pred CcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCE
Q 010910 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348 (497)
Q Consensus 269 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 348 (497)
|++|++++|.+.. +.. .+++|+.|+++++. ++. +. ..+++|+.|++++|. ++. +..+ .++|+.
T Consensus 122 L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~-L~~--lp~l---~~~L~~ 184 (571)
T 3cvr_A 122 LKHLDVDNNQLTM--LPE---LPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNNQ-LTF--LPEL---PESLEA 184 (571)
T ss_dssp CCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSC--CCCC---CTTCCE
T ss_pred CCEEECCCCcCCC--CCC---cCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCCC-CCC--cchh---hCCCCE
Confidence 9999998888765 111 47899999998763 321 11 146899999999876 433 1121 289999
Q ss_pred EeecCCCCCChhHH--HHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHH
Q 010910 349 LEINGCHNIGTMGL--ESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSI 417 (497)
Q Consensus 349 L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 417 (497)
|+++++ .++.... ..+....+.|+.|++++ +.++... ..+. .+++|+.|+++++ .++......+
T Consensus 185 L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~-N~l~~lp-~~l~-~l~~L~~L~L~~N-~l~~~~p~~l 250 (571)
T 3cvr_A 185 LDVSTN-LLESLPAVPVRNHHSEETEIFFRCRE-NRITHIP-ENIL-SLDPTCTIILEDN-PLSSRIRESL 250 (571)
T ss_dssp EECCSS-CCSSCCCCC--------CCEEEECCS-SCCCCCC-GGGG-GSCTTEEEECCSS-SCCHHHHHHH
T ss_pred EECcCC-CCCchhhHHHhhhcccccceEEecCC-CcceecC-HHHh-cCCCCCEEEeeCC-cCCCcCHHHH
Confidence 999985 4432111 01111223349999998 5666421 1223 3899999999985 6665544443
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.30 E-value=2e-09 Score=100.40 Aligned_cols=226 Identities=17% Similarity=0.081 Sum_probs=126.1
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEE-EeecCCCChHHHHHHHhcCCCC
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVL-KLQCINVTDEALVAVGNQCLSL 294 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~l~~l~~~~~~L 294 (497)
+++++|+++++. ++..... ....+++|++|++++|.+....-...+.++++++++ .+.++.+..-.. .....+++|
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC-CSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTC
T ss_pred CCCCEEEccCCc-CCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc-hhhhhcccc
Confidence 689999998863 3322111 124688999999998876432112233456777764 445566543211 122357889
Q ss_pred ceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcE
Q 010910 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (497)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (497)
++|+++++. +....-. ......++..+.+.++..+.......+......++.|+++++ .++..... ....++|++
T Consensus 107 ~~L~l~~n~-l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~ 181 (350)
T 4ay9_X 107 QYLLISNTG-IKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS--AFNGTQLDE 181 (350)
T ss_dssp CEEEEEEEC-CSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--SSTTEEEEE
T ss_pred ccccccccc-cccCCch-hhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChh--hccccchhH
Confidence 999997753 2110000 001134556666665443433221222222346788888874 44322111 112467899
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEe
Q 010910 375 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 454 (497)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 454 (497)
|++.+++.++.... ..+..+++|+.|+++++ .++... . ..+.+|++|.+.++..++. +.. .+.+++|+.++
T Consensus 182 l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N-~l~~lp--~--~~~~~L~~L~~l~~~~l~~--lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 182 LNLSDNNNLEELPN-DVFHGASGPVILDISRT-RIHSLP--S--YGLENLKKLRARSTYNLKK--LPT-LEKLVALMEAS 252 (350)
T ss_dssp EECTTCTTCCCCCT-TTTTTEECCSEEECTTS-CCCCCC--S--SSCTTCCEEECTTCTTCCC--CCC-TTTCCSCCEEE
T ss_pred HhhccCCcccCCCH-HHhccCcccchhhcCCC-CcCccC--h--hhhccchHhhhccCCCcCc--CCC-chhCcChhhCc
Confidence 99987666554321 12345789999999985 454221 1 2367888888777665442 112 25788899998
Q ss_pred eccc
Q 010910 455 LRFC 458 (497)
Q Consensus 455 l~~~ 458 (497)
+.+.
T Consensus 253 l~~~ 256 (350)
T 4ay9_X 253 LTYP 256 (350)
T ss_dssp CSCH
T ss_pred CCCC
Confidence 8654
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.25 E-value=4.7e-08 Score=83.68 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=54.8
Q ss_pred cCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcC
Q 010910 342 GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGC 421 (497)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 421 (497)
.+++|++|+++++. ++... ......+++|++|++++ +.++.... .....+++|+.|+++++ .++... ......+
T Consensus 74 ~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l 147 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQ-LQSLP-NGVFDKLTQLKELALNT-NQLQSLPD-GVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRL 147 (208)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCC-TTTTTTC
T ss_pred CCCCcCEEECCCCc-CCccC-HhHhcCccCCCEEEcCC-CcCcccCH-hHhccCCcCCEEECCCC-ccceeC-HHHhccC
Confidence 35666666666532 32111 11123356777777766 34443211 11234677777777764 333211 1112347
Q ss_pred CCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 422 QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
++|+.|++++|+ +. ..+++|++|+++++
T Consensus 148 ~~L~~L~l~~N~-~~--------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 148 TSLQYIWLHDNP-WD--------CTCPGIRYLSEWIN 175 (208)
T ss_dssp TTCCEEECCSCC-BC--------CCTTTTHHHHHHHH
T ss_pred CCccEEEecCCC-ee--------cCCCCHHHHHHHHH
Confidence 788888888775 33 25677777777666
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.20 E-value=6.8e-07 Score=74.04 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=18.7
Q ss_pred CCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccC
Q 010910 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVG 177 (497)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 177 (497)
+++|+.|+++++. ++.. ..+....++|++|++++|.+.
T Consensus 18 ~~~L~~L~l~~n~-l~~i--~~~~~~~~~L~~L~Ls~N~l~ 55 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPVI--ENLGATLDQFDAIDFSDNEIR 55 (176)
T ss_dssp TTSCEEEECTTSC-CCSC--CCGGGGTTCCSEEECCSSCCC
T ss_pred cCCceEEEeeCCC-Cchh--HHhhhcCCCCCEEECCCCCCC
Confidence 4566666666542 3321 222223346666666666544
No 125
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.19 E-value=2.5e-05 Score=64.54 Aligned_cols=123 Identities=11% Similarity=0.148 Sum_probs=77.7
Q ss_pred HHHHHhccCcccCeeeccCCCCCChHHHHHHhhc---CCCCCEEeecCCCCCChhHHHHHHh---hCCCCcEEecCCCCC
Q 010910 309 GLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATG---CKELTHLEINGCHNIGTMGLESIGK---FCRNLTELALLYCQR 382 (497)
Q Consensus 309 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~ 382 (497)
.+..+...-+.|++|+++++..+.+.+...++.. -..|+.|+|++ +.+++.+...++. .-+.|++|+|++ +.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~-N~ 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVES-NF 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCS-SB
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCC-Cc
Confidence 3444444456677777766434666665555443 34678888877 4567666554443 247788888877 67
Q ss_pred CChHHHHHHHhcC---CCCcEEeccCC-C-CCCHHHHHHHH---HcCCCCcEEeccccc
Q 010910 383 IGNLALLEVGRGC---KSLQALHLVDC-S-SIGDDAICSIA---EGCQNLKKLHIRRCY 433 (497)
Q Consensus 383 ~~~~~~~~~~~~~---~~L~~L~l~~~-~-~~~~~~~~~~~---~~~~~L~~L~l~~~~ 433 (497)
+++.+...+.+.+ +.|+.|.++++ . .+.+.+...++ ..-+.|++|+++.+.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 8888777776644 56888888753 2 45665443333 345778888887653
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=4.3e-08 Score=97.01 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=84.8
Q ss_pred cccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 010910 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKS 397 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 397 (497)
..|+.|+++++. ++. +.. ...+++|+.|+++++ .++. ++.....+++|+.|++++ +.++.. . -...+++
T Consensus 441 ~~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~-N~l~~l--p-~l~~l~~ 509 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASD-NALENV--D-GVANLPR 509 (567)
T ss_dssp TTCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCS-SCCCCC--G-GGTTCSS
T ss_pred cCceEEEecCCC-CCC--CcC-ccccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCC-CCCCCC--c-ccCCCCC
Confidence 368899998875 443 223 345889999999985 4542 222334579999999998 667653 2 2446899
Q ss_pred CcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHH--HHHHHHhhCCCCCeEee
Q 010910 398 LQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNN--GIVAVGEHCNSLTELSL 455 (497)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l 455 (497)
|+.|+++++ .++....+.....+++|+.|++++|+ ++.. ....+...+|+|+.|++
T Consensus 510 L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 510 LQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 999999985 55543212333569999999999986 5432 23345567899999864
No 127
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.17 E-value=4e-07 Score=78.92 Aligned_cols=44 Identities=20% Similarity=0.044 Sum_probs=39.3
Q ss_pred cCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeecc
Q 010910 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIG 53 (497)
Q Consensus 9 ~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~ 53 (497)
+.||+||+.+||+||+ .+|++++++|||+||.+.....+|..+.
T Consensus 6 ~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D~~LWr~~l 49 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRDPILWRYFL 49 (312)
T ss_dssp HHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTCHHHHHHHH
T ss_pred HhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4799999999999999 8999999999999999987777776553
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.16 E-value=2.8e-07 Score=78.77 Aligned_cols=59 Identities=24% Similarity=0.108 Sum_probs=34.5
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (497)
++++.|+++++. ++... ...+..+++|++|+++++.+...... ....+++|++|+++++
T Consensus 28 ~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLP-NGVFDELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCCcEEEcCCCc-cCcCC-hhhhcccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCC
Confidence 578888887753 33221 12234577888888888776532221 1224567777777765
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.16 E-value=4.5e-07 Score=76.78 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=60.7
Q ss_pred HHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhhcccCccEEecCCCCCCChHHHHHHH
Q 010910 159 LAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238 (497)
Q Consensus 159 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 238 (497)
.+..+++|++|++++|.+.... .+. .+++|++|+++++. +.. +......+ ++|+.|+++++. +... .. .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~-~l~~L~~L~l~~n~-l~~--l~~~~~~~-~~L~~L~L~~N~-l~~l--~~-~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLS-GMENLRILSLGRNL-IKK--IENLDAVA-DTLEELWISYNQ-IASL--SG-I 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHH-HHTTCCEEEEEEEE-ECS--CSSHHHHH-HHCSEEEEEEEE-CCCH--HH-H
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccc-cCCCCCEEECCCCC-ccc--ccchhhcC-CcCCEEECcCCc-CCcC--Cc-c
Confidence 4456788888888888765522 332 44778888887663 211 01111111 567777777653 2221 11 2
Q ss_pred hcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCC
Q 010910 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (497)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (497)
..+++|++|++++|.+........+..+++|++|+++++.+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 34566777777666665433323344566677776665544
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.16 E-value=2.2e-07 Score=86.95 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=25.9
Q ss_pred cCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCC
Q 010910 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (497)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (497)
+.++.|+++++. +.......+...+++|++|++++|.+...... .+..+++|++|+++++.+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChh-hccCCCCCCEEECCCCcC
Confidence 445666666542 22211111111445555555555544322111 122345555555554444
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.15 E-value=1.9e-07 Score=81.16 Aligned_cols=59 Identities=15% Similarity=0.042 Sum_probs=26.0
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+++|+.|+++++ .++. ++.....+++|+.|++++|. ++.... .....+++|+.|++.++
T Consensus 111 l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 111 LVHLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQNQ-LKSIPH-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CTTCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECTTS
T ss_pred chhhCeEeccCC-cccc--cCcccccCCCCCEEECCCCc-CCccCH-HHHhCCCCCCEEEeeCC
Confidence 455555555543 2321 11111345555555555553 332111 11234555666666555
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.15 E-value=1.5e-07 Score=87.98 Aligned_cols=158 Identities=17% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCC
Q 010910 292 LSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 371 (497)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 371 (497)
+.++.|+++++. ++......+...+++|+.|+++++. ++...... +..+++|++|+++++ .++.... .....+++
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~-~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEA-FVPVPNLRYLDLSSN-HLHTLDE-FLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCCEECT-TTTTTCTT
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhh-ccCCCCCCEEECCCC-cCCcCCH-HHhCCCcC
Confidence 568899998753 3321111111157899999999875 44322222 345889999999984 4443221 12344789
Q ss_pred CcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHH--HHcCCCCcEEecccccccCHHHHHHHHhhCCC
Q 010910 372 LTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSI--AEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNS 449 (497)
Q Consensus 372 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 449 (497)
|++|++++ +.++..... ....+++|+.|+++++ .++......+ ...+++|+.|++++|. ++......+ ..++.
T Consensus 114 L~~L~L~~-N~i~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~-~~l~~ 188 (361)
T 2xot_A 114 LEVLLLYN-NHIVVVDRN-AFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDL-QKLPA 188 (361)
T ss_dssp CCEEECCS-SCCCEECTT-TTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHH-HHSCH
T ss_pred CCEEECCC-CcccEECHH-HhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHh-hhccH
Confidence 99999998 566543221 2245799999999985 4443211111 1358899999999985 654333333 35666
Q ss_pred --CCeEeecccc
Q 010910 450 --LTELSLRFCD 459 (497)
Q Consensus 450 --L~~L~l~~~~ 459 (497)
|+.|++.+++
T Consensus 189 ~~l~~l~l~~N~ 200 (361)
T 2xot_A 189 WVKNGLYLHNNP 200 (361)
T ss_dssp HHHTTEECCSSC
T ss_pred hhcceEEecCCC
Confidence 4889998874
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.14 E-value=1.7e-07 Score=80.75 Aligned_cols=11 Identities=9% Similarity=-0.022 Sum_probs=6.0
Q ss_pred CCCceeecccc
Q 010910 292 LSLELLALYSF 302 (497)
Q Consensus 292 ~~L~~L~l~~~ 302 (497)
++++.|+++++
T Consensus 32 ~~l~~L~l~~n 42 (220)
T 2v9t_B 32 ETITEIRLEQN 42 (220)
T ss_dssp TTCCEEECCSS
T ss_pred cCCCEEECCCC
Confidence 45566666543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.11 E-value=6.2e-07 Score=75.92 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=83.4
Q ss_pred HhhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCCCCCCHHHHHHHHhh
Q 010910 134 ADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (497)
Q Consensus 134 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 213 (497)
...+++|+.|+++++. +... . .+..+++|++|++++|.+..- ......+++|++|+++++.-.....+..+
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~l--~-~~~~l~~L~~L~l~~n~l~~l--~~~~~~~~~L~~L~L~~N~l~~l~~~~~l--- 114 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEKI--S-SLSGMENLRILSLGRNLIKKI--ENLDAVADTLEELWISYNQIASLSGIEKL--- 114 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESCC--C-CHHHHTTCCEEEEEEEEECSC--SSHHHHHHHCSEEEEEEEECCCHHHHHHH---
T ss_pred HhcCCCCCEEECCCCC-Cccc--c-ccccCCCCCEEECCCCCcccc--cchhhcCCcCCEEECcCCcCCcCCccccC---
Confidence 3458999999999753 4432 2 345689999999999987632 22333457999999998853332233332
Q ss_pred cccCccEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCChhH---------HHHHHhcCCCCcEEE
Q 010910 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG---------VHAVAQGCPLLRVLK 273 (497)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------~~~~~~~~~~L~~L~ 273 (497)
++|+.|+++++. +...........+++|++|++++|.+.... ....+..+++|+.|+
T Consensus 115 --~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 115 --VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp --HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred --CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 789999999865 333222223458999999999998664331 122234466666655
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.11 E-value=1.9e-07 Score=80.49 Aligned_cols=84 Identities=23% Similarity=0.166 Sum_probs=35.8
Q ss_pred CCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCC
Q 010910 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN 448 (497)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (497)
+++|++|++++ +.++..... ....+++|++|+++++ .++......+ ..+++|+.|++++|. ++...... ...++
T Consensus 80 l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~ 153 (220)
T 2v70_A 80 ASGVNEILLTS-NRLENVQHK-MFKGLESLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDNQ-ITTVAPGA-FDTLH 153 (220)
T ss_dssp CTTCCEEECCS-SCCCCCCGG-GGTTCSSCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTSC-CCCBCTTT-TTTCT
T ss_pred CCCCCEEECCC-CccCccCHh-HhcCCcCCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCCc-CCEECHHH-hcCCC
Confidence 45555555555 333322111 1223555555555553 2221111111 235566666666553 33211111 13455
Q ss_pred CCCeEeeccc
Q 010910 449 SLTELSLRFC 458 (497)
Q Consensus 449 ~L~~L~l~~~ 458 (497)
+|++|+++++
T Consensus 154 ~L~~L~L~~N 163 (220)
T 2v70_A 154 SLSTLNLLAN 163 (220)
T ss_dssp TCCEEECCSC
T ss_pred CCCEEEecCc
Confidence 6666666655
No 136
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.09 E-value=1.3e-06 Score=76.89 Aligned_cols=44 Identities=30% Similarity=0.505 Sum_probs=38.1
Q ss_pred ccccCCCHHHHHHHHccCCCccchh-hHHhhhHHHHHhhhcccceee
Q 010910 6 RINTCLPDEVILEIFRHLDSKASRD-ACSLVCRRWLTLERLSRTTLR 51 (497)
Q Consensus 6 ~~~~~LP~evl~~If~~L~~~~d~~-~~~~vcr~W~~~~~~~~~~~~ 51 (497)
.+ ..||+|++.+||+||| .++++ ++++|||+|+.++..+.+|.+
T Consensus 50 ~~-~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~~~~w~~ 94 (297)
T 2e31_A 50 YL-AELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDGAPLWLL 94 (297)
T ss_dssp CT-TSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTSHHHHHH
T ss_pred Ch-hhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcChHHHHH
Confidence 44 4899999999999999 79999 999999999999776655543
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.07 E-value=1.6e-08 Score=94.32 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=128.4
Q ss_pred CCCceEeccCCCCCCH---HHHHHHHhhcccCccEEecCCCCCCChHHHHHHHhcCCCCcEE-EccCCCCChhHHHHHHh
Q 010910 189 NQLEDLNLRFCEGLTD---TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETL-SLDSEFIHNKGVHAVAQ 264 (497)
Q Consensus 189 ~~L~~L~l~~~~~~~~---~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~ 264 (497)
+++++|+++++. +.. ..+.. .++|++|+++++......... ....++++.++ .+.++.+.... ...+.
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f~~-----l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~-~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAFSG-----FGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYIN-PEAFQ 101 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSSTT-----CTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEEC-TTSBC
T ss_pred CCCCEEEccCCc-CCCcCHHHHcC-----CCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccC-chhhh
Confidence 689999999874 332 12222 279999999987533321111 12356777664 44445554321 12345
Q ss_pred cCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccccCCCHHHHHHHhccCcccCeeeccCCCCCChHHHHHHhhcCC
Q 010910 265 GCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCK 344 (497)
Q Consensus 265 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 344 (497)
.+++|++|+++++.+......... ...++..+++.++..+..-....+......++.|+++++. ++... .-.-...
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~--~~~f~~~ 177 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIH--NSAFNGT 177 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEEC--TTSSTTE
T ss_pred hccccccccccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCC--hhhcccc
Confidence 689999999988776532111111 2345667777654333221111111112458889998865 43211 1111246
Q ss_pred CCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCC
Q 010910 345 ELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNL 424 (497)
Q Consensus 345 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 424 (497)
+|++|.+.+++.++...-. .+..+++|++|++++ +.++.... ..+.+|++|.+.++..+.. ++.+ ..+++|
T Consensus 178 ~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~-N~l~~lp~----~~~~~L~~L~~l~~~~l~~--lP~l-~~l~~L 248 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPND-VFHGASGPVILDISR-TRIHSLPS----YGLENLKKLRARSTYNLKK--LPTL-EKLVAL 248 (350)
T ss_dssp EEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTT-SCCCCCCS----SSCTTCCEEECTTCTTCCC--CCCT-TTCCSC
T ss_pred chhHHhhccCCcccCCCHH-HhccCcccchhhcCC-CCcCccCh----hhhccchHhhhccCCCcCc--CCCc-hhCcCh
Confidence 7899999876665443211 234479999999998 56654321 2367888888877655542 2222 458899
Q ss_pred cEEecccc
Q 010910 425 KKLHIRRC 432 (497)
Q Consensus 425 ~~L~l~~~ 432 (497)
+.+++.+.
T Consensus 249 ~~l~l~~~ 256 (350)
T 4ay9_X 249 MEASLTYP 256 (350)
T ss_dssp CEEECSCH
T ss_pred hhCcCCCC
Confidence 99999764
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=1.2e-07 Score=87.56 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=58.1
Q ss_pred CCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCC
Q 010910 344 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 423 (497)
Q Consensus 344 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 423 (497)
.+++.+.+.+ .+....+..+...|++|+++++++ +.++..+- ..+.+|++|+.+.+.+. +...+-..+ ..|++
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~~aF-~~~~~ 274 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISK-TNATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQRVF-SNCGR 274 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTT-BCCCEECT-TTTTTCTTCCEEECCTT--CCEECTTTT-TTCTT
T ss_pred cccceEEEee--eecHHHHHHHHHhcCCCeEEECCC-CCcceecH-hhhhCCCCCCEEECCcc--cceehHHHh-hCChh
Confidence 3445555544 244455555555678888888876 33332211 11245788888888652 332111112 35777
Q ss_pred Cc-EEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 424 LK-KLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 424 L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
|+ .+.+.+. ++..+-..+ .+|++|+.|++.++
T Consensus 275 L~~~l~l~~~--l~~I~~~aF-~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 275 LAGTLELPAS--VTAIEFGAF-MGCDNLRYVLATGD 307 (329)
T ss_dssp CCEEEEECTT--CCEECTTTT-TTCTTEEEEEECSS
T ss_pred ccEEEEEccc--ceEEchhhh-hCCccCCEEEeCCC
Confidence 87 8888762 332222223 47888888887655
No 139
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.04 E-value=1.3e-06 Score=75.76 Aligned_cols=59 Identities=25% Similarity=0.172 Sum_probs=25.4
Q ss_pred CCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccCC
Q 010910 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (497)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 199 (497)
++|+.|+++++. ++... ...+..+++|++|++++|.+...... ....+++|++|+++++
T Consensus 40 ~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLE-PGVFDSLINLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCc-cCccC-HHHhhCccCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCC
Confidence 456666665532 22211 11223455666666666554322111 1123345555555544
No 140
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.99 E-value=4.7e-07 Score=78.00 Aligned_cols=126 Identities=19% Similarity=0.151 Sum_probs=80.9
Q ss_pred CCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCC
Q 010910 344 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 423 (497)
Q Consensus 344 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 423 (497)
+.++.|+++++ .++..........+++|++|++++ +.++..... ....+++|+.|+++++ .++.... .....+++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSN-NKITDIEEG-AFEGASGVNEILLTSN-RLENVQH-KMFKGLES 106 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCS-SCCCEECTT-TTTTCTTCCEEECCSS-CCCCCCG-GGGTTCSS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCC-CcCCEECHH-HhCCCCCCCEEECCCC-ccCccCH-hHhcCCcC
Confidence 45677777773 343321111234578899999988 556543221 2245899999999986 4443222 22346899
Q ss_pred CcEEecccccccCHHHHHHHHhhCCCCCeEeeccccccc---chhHHhhhhhccccc
Q 010910 424 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYG---KFFSPQLHSYSHFHL 477 (497)
Q Consensus 424 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~l~~~~~ 477 (497)
|+.|++++|. ++......+ ..+++|++|++++| +++ +..+..+.++..+.+
T Consensus 107 L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 107 LKTLMLRSNR-ITCVGNDSF-IGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp CCEEECTTSC-CCCBCTTSS-TTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCeECHhHc-CCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEe
Confidence 9999999986 553222222 47899999999999 444 455666777777766
No 141
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.92 E-value=8.5e-07 Score=76.40 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=91.6
Q ss_pred cccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCC
Q 010910 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKS 397 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 397 (497)
++|+.|+++++. ++..... ....+++|+.|+++++ .++..... ....+++|++|++++ +.++.... ..+..+++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~-N~l~~l~~-~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPG-AFSPYKKLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYG-NKITELPK-SLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSC-CCEECTT-SSTTCTTCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCS-SCCCCCCT-TTTTTCTT
T ss_pred cCCCEEECCCCc-CCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCC-CcCCccCH-hHccCCCC
Confidence 579999999875 4432211 2345899999999985 44432212 223479999999998 56654321 22345899
Q ss_pred CcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecccccccchhHHhh
Q 010910 398 LQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRYGKFFSPQL 469 (497)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 469 (497)
|+.|+++++ .++...... ...+++|+.|++++|. ++...... ...+++|++|++++++-.-+-.+..+
T Consensus 106 L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 106 LQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDNK-LQTIAKGT-FSPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp CCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCCc-CCEECHHH-HhCCCCCCEEEeCCCCcCCCCccHHH
Confidence 999999985 454322222 2358999999999986 55322222 24789999999999853333334443
No 142
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.73 E-value=7.7e-06 Score=79.30 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=40.3
Q ss_pred ccccccCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhc-ccceeec
Q 010910 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERL-SRTTLRI 52 (497)
Q Consensus 4 ~~~~~~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~-~~~~~~~ 52 (497)
.|.+. .||+|++.+||+||+ .+|++++++|||+|+++... ...|..+
T Consensus 12 ~d~~~-~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 12 RDLIT-SLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp CCHHH-HSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred cCChH-HCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46674 899999999999999 89999999999999999765 5666544
No 143
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.60 E-value=1.3e-05 Score=77.12 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=41.5
Q ss_pred CccccccCCCHH----HHHHHHccCCCccchhhHHhhhHHHHHhhhcccceeec
Q 010910 3 GHDRINTCLPDE----VILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRI 52 (497)
Q Consensus 3 ~~~~~~~~LP~e----vl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~ 52 (497)
..|.+. .||+| |+.+||+||+ .+|+.++++|||+|+++......|..+
T Consensus 7 ~~d~~~-~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 7 QRDFIT-ALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCCHHH-HTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred hcChHH-HCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 357774 89999 9999999999 899999999999999997776666654
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.58 E-value=1.4e-05 Score=67.04 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=15.0
Q ss_pred cccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecC
Q 010910 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEING 353 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 353 (497)
++|+.|+++++. ++.. ......+++|+.|++++
T Consensus 31 ~~l~~L~L~~n~-i~~i--p~~~~~l~~L~~L~Ls~ 63 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLV--PKELSNYKHLTLIDLSN 63 (193)
T ss_dssp TTCCEEECCSSC-CCSC--CGGGGGCTTCCEEECCS
T ss_pred CCCCEEECCCCc-Cchh--HHHhhcccCCCEEECCC
Confidence 355666665543 2211 11223355555555555
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.58 E-value=2.2e-06 Score=87.69 Aligned_cols=11 Identities=0% Similarity=-0.124 Sum_probs=0.9
Q ss_pred CCCCeEeeccc
Q 010910 448 NSLTELSLRFC 458 (497)
Q Consensus 448 ~~L~~L~l~~~ 458 (497)
+.|+.|+++.+
T Consensus 359 ~~l~~l~l~~n 369 (727)
T 4b8c_D 359 HERRFIEINTD 369 (727)
T ss_dssp CC---------
T ss_pred cccceeEeecc
Confidence 35777777665
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.54 E-value=6.1e-06 Score=69.29 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=51.0
Q ss_pred ccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCC
Q 010910 319 KLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSL 398 (497)
Q Consensus 319 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 398 (497)
+|+.|+++++. ++..........+++|++|+++++ .++..... ....+++|++|++++ +.++...... ...+++|
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGE-NKIKEISNKM-FLGLHQL 104 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCS-CCCCEECSSS-STTCTTC
T ss_pred CCCEEECCCCc-CCccCCccccccCCCCCEEECCCC-CCCCcCHh-HcCCcccCCEEECCC-CcCCccCHHH-hcCCCCC
Confidence 67777777654 322111111234667777777663 33322111 122356677777766 4444322111 1235666
Q ss_pred cEEeccCCCCCCHHHHHHHHHcCCCCcEEeccccc
Q 010910 399 QALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 433 (497)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 433 (497)
+.|+++++ .++.... .....+++|+.|++++++
T Consensus 105 ~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 105 KTLNLYDN-QISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSS-CCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred CEEECCCC-cCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 66666653 3332111 111235566666666654
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.46 E-value=9.2e-06 Score=83.06 Aligned_cols=109 Identities=21% Similarity=0.154 Sum_probs=56.4
Q ss_pred cCcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcC
Q 010910 316 GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGC 395 (497)
Q Consensus 316 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 395 (497)
.+++|+.|+++++. +.... ..+. .+++|++|+|+++ .++. +..-...+++|+.|+|++ +.++. +..-...+
T Consensus 222 ~l~~L~~L~Ls~n~-l~~l~-~~~~-~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~-N~l~~--lp~~~~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IFNIS-ANIF-KYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSH-NRLTS--LPAELGSC 292 (727)
T ss_dssp CCCCCCEEECTTSC-CSCCC-GGGG-GCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTT-SCCSS--CCSSGGGG
T ss_pred cCCCCcEEECCCCC-CCCCC-hhhc-CCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcC-CcCCc--cChhhcCC
Confidence 45677777777654 22110 1122 4677777777764 3331 111123457777777776 44542 11112346
Q ss_pred CCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCH
Q 010910 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGN 437 (497)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 437 (497)
++|+.|+++++ .++. ++.....+++|+.|+|++|. ++.
T Consensus 293 ~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~-l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNP-LEK 330 (727)
T ss_dssp TTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTSC-CCS
T ss_pred CCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCCc-cCC
Confidence 67777777664 3331 22212346677777777765 443
No 148
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.42 E-value=5.6e-05 Score=72.78 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=39.1
Q ss_pred ccccccCCCHHHHHHHHccCCCccchhhHHhhhHHHHHhhhcccceee
Q 010910 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLR 51 (497)
Q Consensus 4 ~~~~~~~LP~evl~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~ 51 (497)
.|.+ +.||+|++.+||+||+ .+|+.++++|||+|+.+......|..
T Consensus 16 ~d~~-~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~~~~~w~~ 61 (445)
T 2ovr_B 16 RDFI-SLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAEDNLLWRE 61 (445)
T ss_dssp CSTT-TSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred CChh-HHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcCchhHhhh
Confidence 4666 4899999999999999 89999999999999999765545543
No 149
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.35 E-value=3.9e-05 Score=64.33 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=73.7
Q ss_pred CCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCC
Q 010910 343 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQ 422 (497)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 422 (497)
.++|++|+++++ .++... .....+++|+.|++++ +.++..... .+..+++|+.|+++++ .++...... ...++
T Consensus 30 ~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~-N~i~~i~~~-~f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~ 102 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSN-NRISTLSNQ-SFSNMTQLLTLILSYN-RLRCIPPRT-FDGLK 102 (193)
T ss_dssp CTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCCBCCTTT-TTTCT
T ss_pred CCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCC-CcCCEeCHh-HccCCCCCCEEECCCC-ccCEeCHHH-hCCCC
Confidence 468999999984 454322 2335579999999998 566543222 2345899999999985 454322212 24589
Q ss_pred CCcEEecccccccCHHHHHHHHhhCCCCCeEeecccc
Q 010910 423 NLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459 (497)
Q Consensus 423 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (497)
+|+.|++++|. ++.... .....+++|+.|++++++
T Consensus 103 ~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 103 SLRLLSLHGND-ISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCeeCh-hhhhcCccccEEEeCCCC
Confidence 99999999986 653222 123478999999999885
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.34 E-value=8.1e-05 Score=61.41 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=18.1
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCC
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (497)
.+++|++|++++|.+.... ...+..+++|++|+++++.+
T Consensus 98 ~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred CCcccCEEECcCCcceEeC-HHHhcCCcccCEEEecCCCe
Confidence 3455566666555443211 11123345555555555544
No 151
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.30 E-value=2.2e-05 Score=65.84 Aligned_cols=40 Identities=20% Similarity=0.060 Sum_probs=19.3
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCC
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (497)
.+++|++|++++|.+..... ..+..+++|++|+++++.+.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCcc
Confidence 35556666666655443211 11233555666666555443
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.28 E-value=2.6e-05 Score=64.41 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=27.8
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
+++|+.|+++++ .++... ......+++|+.|+++++. ++.... .....+++|++|+++++
T Consensus 75 l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLP-NGVFDKLTQLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCccCEEECCCC-CccccC-HHHhhCCcccCEEECcCCc-ceEeCH-HHhcCCcccCEEEecCC
Confidence 455555555553 232111 1111235566666666653 432111 11234566666666666
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.01 E-value=0.0016 Score=56.99 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=16.3
Q ss_pred cCCCCCEEeecCCCCCCh-hHHHHHHhhCCCCcEEecCC
Q 010910 342 GCKELTHLEINGCHNIGT-MGLESIGKFCRNLTELALLY 379 (497)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~ 379 (497)
.+++|++|+|+++. ++. .++..+...+++|+.|+|++
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC
Confidence 35555555555532 221 12222333345555555555
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.91 E-value=0.0019 Score=56.54 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=8.4
Q ss_pred cCCCCcEEEccCCCCCh
Q 010910 240 HCKSLETLSLDSEFIHN 256 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~ 256 (497)
.+++|+.|++++|.+..
T Consensus 194 ~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKS 210 (267)
T ss_dssp HSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCccCC
Confidence 44555555555544443
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.57 E-value=0.00044 Score=56.69 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=24.4
Q ss_pred CCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccC
Q 010910 344 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVD 405 (497)
Q Consensus 344 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (497)
++|+.|+++++ .+.... ......+++|++|++++ +.++.... ..+..+++|+.|++++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNS-NKLTAIPT-GVFDKLTQLTQLDLND 90 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCC-CCCCccCh-hHhCCcchhhEEECCC
Confidence 45666666653 232211 11122345566666655 34433111 1112345555555554
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.45 E-value=0.00036 Score=56.98 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=38.7
Q ss_pred CCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCC
Q 010910 344 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 423 (497)
Q Consensus 344 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 423 (497)
++|+.|+++++ .++... ......+++|++|++++ +.++.... ..+..+++|+.|+++++ .++.... .....+++
T Consensus 30 ~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~-N~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDN-NQLTVLPA-GVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKS 103 (170)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCC-CCcCccCh-hhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCC
Confidence 56677777663 332211 11122356666666666 44443211 11233566666666653 3332111 11223556
Q ss_pred CcEEeccccc
Q 010910 424 LKKLHIRRCY 433 (497)
Q Consensus 424 L~~L~l~~~~ 433 (497)
|+.|++++++
T Consensus 104 L~~L~L~~N~ 113 (170)
T 3g39_A 104 LTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeCCCC
Confidence 6666666554
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.06 E-value=0.0031 Score=51.34 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=19.3
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCC
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (497)
.+++|++|++++|.+..... ..+..+++|+.|++++|.+.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCC
Confidence 34555555555554432111 11234566666666655543
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.99 E-value=0.0034 Score=51.28 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=18.9
Q ss_pred cCCCCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCC
Q 010910 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (497)
.+++|++|++++|.+..... ..+..+++|+.|+++++.+.
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBC
T ss_pred CcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcc
Confidence 34555555555544432111 11234566666666555543
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.99 E-value=0.00011 Score=69.33 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=32.5
Q ss_pred hhCCCCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEecc
Q 010910 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLR 197 (497)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 197 (497)
..|.+|+++.+.. .++..+ ...+.+|.+|+.+++..+ +...+-. ....|++|+.+.+.
T Consensus 68 ~~c~~L~~i~lp~--~i~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~-aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREIG-EFAFENCSKLEIINIPDS-VKMIGRC-TFSGCYALKSILLP 125 (394)
T ss_dssp TTCTTEEEEECCT--TCCEEC-TTTTTTCTTCCEECCCTT-CCEECTT-TTTTCTTCCCCCCC
T ss_pred hCCCCceEEEeCC--CccCcc-hhHhhCCCCCcEEEeCCC-ceEccch-hhcccccchhhccc
Confidence 4578888888864 233221 122356889999998754 2221111 12356677776654
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.95 E-value=0.0017 Score=61.10 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=8.4
Q ss_pred cCCCCcEEEccCCCC
Q 010910 240 HCKSLETLSLDSEFI 254 (497)
Q Consensus 240 ~~~~L~~L~l~~~~~ 254 (497)
.|++|+.+++..+.+
T Consensus 178 ~c~~L~~l~l~~n~l 192 (401)
T 4fdw_A 178 YCYNLKKADLSKTKI 192 (401)
T ss_dssp TCTTCCEEECTTSCC
T ss_pred CcccCCeeecCCCcc
Confidence 456666666655433
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.71 E-value=0.00024 Score=66.99 Aligned_cols=190 Identities=15% Similarity=0.195 Sum_probs=107.3
Q ss_pred CCcEEEccCCCCChhHHHHHHhcCCCCcEEEeecCCCChHHHHHHHhcCCCCceeecccc-cCCCHHHHHHHhccCcccC
Q 010910 243 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSF-QQFTDKGLHAVGKGCKKLK 321 (497)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~ 321 (497)
+|+++.+.. .+..-+. ..+.+|++|+.+.+..+.+..-.-..+. +.+|+.+.+... ..+... ....|++|+
T Consensus 158 ~L~~i~lp~-~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF~--~~~L~~l~lp~~l~~I~~~----aF~~~~~L~ 229 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKE-DIFYYCYNLKKADLSKTKITKLPASTFV--YAGIEEVLLPVTLKEIGSQ----AFLKTSQLK 229 (401)
T ss_dssp CCCEEECCT-TCCEECS-STTTTCTTCCEEECTTSCCSEECTTTTT--TCCCSEEECCTTCCEECTT----TTTTCTTCC
T ss_pred CceEEEeCC-CccEehH-HHhhCcccCCeeecCCCcceEechhhEe--ecccCEEEeCCchheehhh----HhhCCCCCC
Confidence 577777754 1211111 1235689999999976555332111121 578898888642 112221 223478899
Q ss_pred eeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCC-------CChHHHHHHHhc
Q 010910 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQR-------IGNLALLEVGRG 394 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~ 394 (497)
.+.+..+ +..-+-..+ .+ .+|+.+.+.+ .+...+-. .+..|++|+.+.+.+... +.+.. +.+
T Consensus 230 ~l~l~~~--l~~I~~~aF-~~-~~L~~i~lp~--~i~~I~~~-aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a----F~~ 298 (401)
T 4fdw_A 230 TIEIPEN--VSTIGQEAF-RE-SGITTVKLPN--GVTNIASR-AFYYCPELAEVTTYGSTFNDDPEAMIHPYC----LEG 298 (401)
T ss_dssp CEECCTT--CCEECTTTT-TT-CCCSEEEEET--TCCEECTT-TTTTCTTCCEEEEESSCCCCCTTCEECTTT----TTT
T ss_pred EEecCCC--ccCcccccc-cc-CCccEEEeCC--CccEEChh-HhhCCCCCCEEEeCCccccCCcccEECHHH----hhC
Confidence 9998763 222111122 22 6899998854 23222211 224589999999876221 22222 356
Q ss_pred CCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeeccc
Q 010910 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458 (497)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 458 (497)
|++|+.+.+.. .+...+-..+ ..|++|+.+.+..+ ++.-+-..+ .+| +|+.|.+.++
T Consensus 299 c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~--l~~I~~~aF-~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 299 CPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN--VTQINFSAF-NNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT--CCEECTTSS-SSS-CCCEEEECCS
T ss_pred CccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc--ccEEcHHhC-CCC-CCCEEEEcCC
Confidence 89999999874 2332222222 45889999999764 332222233 477 9999999887
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.76 E-value=0.00018 Score=67.94 Aligned_cols=80 Identities=28% Similarity=0.403 Sum_probs=39.1
Q ss_pred hCCCCcEEecCCC-CCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhh
Q 010910 368 FCRNLTELALLYC-QRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEH 446 (497)
Q Consensus 368 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 446 (497)
.|.+|+.+.+... ..+.+.. +.+|.+|+.+.+.. .++.-+-..+ ..|.+|+.+.+..+ ++.-+-..+ .+
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~~--l~~I~~~aF-~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPLS--LRKIGANAF-QG 364 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCTT--CCEECTTTB-TT
T ss_pred ccccccccccccccceechhh----hcCCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECcc--ccEehHHHh-hC
Confidence 3567777766431 1222222 23467777777643 2221111111 34677777777543 221111222 46
Q ss_pred CCCCCeEeecc
Q 010910 447 CNSLTELSLRF 457 (497)
Q Consensus 447 ~~~L~~L~l~~ 457 (497)
|++|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 77777777754
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.18 E-value=0.012 Score=54.21 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=46.6
Q ss_pred hcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 010910 341 TGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEG 420 (497)
Q Consensus 341 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 420 (497)
..+++|+.|+|++.+.++...-. .+..+++|+.|+|++ +.++..... .+..+++|+.|+|+++ .++... ......
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~-N~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~ 102 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVK-SGLRFVAPD-AFHFTPRLSRLNLSFN-ALESLS-WKTVQG 102 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCS-SCCCEECTT-GGGSCSCCCEEECCSS-CCSCCC-STTTCS
T ss_pred CCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCC-CccceeCHH-HhcCCcCCCEEeCCCC-ccceeC-HHHccc
Confidence 34667888888753444332211 123467888888877 455543211 2235777778877774 443211 111112
Q ss_pred CCCCcEEeccccc
Q 010910 421 CQNLKKLHIRRCY 433 (497)
Q Consensus 421 ~~~L~~L~l~~~~ 433 (497)
+ +|+.|++.+++
T Consensus 103 ~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 103 L-SLQELVLSGNP 114 (347)
T ss_dssp C-CCCEEECCSSC
T ss_pred C-CceEEEeeCCC
Confidence 2 37777777665
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.15 E-value=0.022 Score=52.43 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=15.3
Q ss_pred CCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCC
Q 010910 343 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLY 379 (497)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 379 (497)
+++|+.|+|+++ .++... ...+..+++|++|+|++
T Consensus 55 l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 55 LGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCS
T ss_pred ccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCC
Confidence 555555555552 232211 11112345555555555
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=81.58 E-value=0.83 Score=42.58 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=16.3
Q ss_pred CCcEEeeccCCCcChHHHHHHHHhCCCCCEEEccCc
Q 010910 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGC 174 (497)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 174 (497)
.|+++.+... ++..+- ..+.+|.+|+.+.+..+
T Consensus 65 ~L~sI~iP~s--vt~Ig~-~AF~~C~~L~~i~~~~n 97 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGS-NAFYNCTSLKRVTIQDN 97 (394)
T ss_dssp CCCEEEECTT--CCEECT-TTTTTCTTCCEEEEGGG
T ss_pred cCEEEEECCC--eeEEhH-HHhhCCccCceEeecCC
Confidence 4677766431 222111 11235677777776543
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.31 E-value=0.52 Score=43.99 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=28.5
Q ss_pred hhCCCCcEEeeccC--CCcChHHHHHHHHhCCCCCEEEccCcccCcHhHHHHHhhCCCCceEeccC
Q 010910 135 DGFSKLEKLSLIWC--SNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRF 198 (497)
Q Consensus 135 ~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 198 (497)
..|.+|+.+.+... ..++..+ ...+..|.+|+.+.+..+- ...+-. ....|.+|+.+.+..
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig-~~aF~~c~~L~~i~~~~~~-~~I~~~-aF~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIG-RQAFMFCSELTDIPILDSV-TEIDSE-AFHHCEELDTVTIPE 146 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEEC-TTTTTTCTTCCBCGGGTTC-SEECTT-TTTTCTTCCEEECCT
T ss_pred hCCccCceEeecCCCCCeeeEec-hhhchhcccceeeccCCcc-ceehhh-hhhhhcccccccccc
Confidence 45778888877532 1122111 1112356667766655431 111111 123456777777653
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=48.04 E-value=9.7 Score=28.66 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=5.3
Q ss_pred CCCCCEEEccCc
Q 010910 163 CIHLKSLDLQGC 174 (497)
Q Consensus 163 ~~~L~~L~l~~~ 174 (497)
+++|++|+|.+|
T Consensus 54 l~~L~~L~L~~N 65 (130)
T 3rfe_A 54 LPALRTAHLGAN 65 (130)
T ss_dssp CTTCCEEECCSS
T ss_pred ccccCEEEecCC
Confidence 344444444444
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=46.52 E-value=3.6 Score=37.92 Aligned_cols=125 Identities=18% Similarity=0.357 Sum_probs=65.0
Q ss_pred CcccCeeeccCCCCCChHHHHHHhhcCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCCCCCChHHHHHHHhcCC
Q 010910 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (497)
+.+|+.+.+... +...+.. ....+..|+.+.+... +...+-. ....|.+|+.+.+.. .+...+. ..+.+|+
T Consensus 216 ~~~l~~i~~~~~--~~~i~~~-~f~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~l~~i~l~~--~i~~i~~-~aF~~c~ 286 (379)
T 4h09_A 216 GKNLKKITITSG--VTTLGDG-AFYGMKALDEIAIPKN--VTSIGSF-LLQNCTALKTLNFYA--KVKTVPY-LLCSGCS 286 (379)
T ss_dssp CSSCSEEECCTT--CCEECTT-TTTTCSSCCEEEECTT--CCEECTT-TTTTCTTCCEEEECC--CCSEECT-TTTTTCT
T ss_pred ccccceeeeccc--eeEEccc-cccCCccceEEEcCCC--ccEeCcc-ccceeehhccccccc--cceeccc-ccccccc
Confidence 556666666442 1111111 1234777888887542 2221111 123467788887754 2222111 1124578
Q ss_pred CCcEEeccCC--CCCCHHHHHHHHHcCCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecc
Q 010910 397 SLQALHLVDC--SSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRF 457 (497)
Q Consensus 397 ~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 457 (497)
+|+.+.+.+. ..+.+..+ ..|.+|+.+.|... ++.-+-..+ .+|++|+.+.+..
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp~~--l~~I~~~aF-~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVF----MDCVKLSSVTLPTA--LKTIQVYAF-KNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCTTCCEECTTTT----TTCTTCCEEECCTT--CCEECTTTT-TTCTTCCCCCCCT
T ss_pred ccccccccccccceehhhhh----cCCCCCCEEEcCcc--ccEEHHHHh-hCCCCCCEEEECC
Confidence 8888888653 12332222 45788888888653 222122223 4788888888854
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=45.86 E-value=12 Score=28.10 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=5.3
Q ss_pred CCCCcEEeccCC
Q 010910 395 CKSLQALHLVDC 406 (497)
Q Consensus 395 ~~~L~~L~l~~~ 406 (497)
+++|+.|+|.++
T Consensus 54 l~~L~~L~L~~N 65 (130)
T 3rfe_A 54 LPALRTAHLGAN 65 (130)
T ss_dssp CTTCCEEECCSS
T ss_pred ccccCEEEecCC
Confidence 344444444443
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=45.01 E-value=2.5 Score=38.98 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=73.3
Q ss_pred cCCCCCEEeecCCCCCChhHHHHHHhhCCCCcEEecCCC-CCCChHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHHc
Q 010910 342 GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYC-QRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEG 420 (497)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 420 (497)
.+.+|+.+.+... +...+.. ....+..|+.+.+... ..+.+.. ...+.+|+.+.+.. .+...+-.. ...
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~-~f~~~~~L~~i~lp~~v~~I~~~a----F~~~~~l~~i~l~~--~i~~i~~~a-F~~ 284 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDG-AFYGMKALDEIAIPKNVTSIGSFL----LQNCTALKTLNFYA--KVKTVPYLL-CSG 284 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTT-TTTTCSSCCEEEECTTCCEECTTT----TTTCTTCCEEEECC--CCSEECTTT-TTT
T ss_pred cccccceeeeccc--eeEEccc-cccCCccceEEEcCCCccEeCccc----cceeehhccccccc--cceeccccc-ccc
Confidence 4678888887542 2211111 1234789999998652 1233322 24588999998864 232222112 246
Q ss_pred CCCCcEEecccccccCHHHHHHHHhhCCCCCeEeecc-cccccchhHHhhhhhcccccc
Q 010910 421 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRF-CDRYGKFFSPQLHSYSHFHLG 478 (497)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~l~~~~~~~l~~l~~~~~~ 478 (497)
|++|+.+.+.++. ++.-+-..+ .+|.+|+.+.+.. ...+++..+....+|..+.++
T Consensus 285 c~~L~~i~l~~~~-i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNSA-IETLEPRVF-MDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCTT-CCEECTTTT-TTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccc-cceehhhhh-cCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence 8999999998653 332112223 5899999999953 345566666655667666653
Done!