Query 010911
Match_columns 497
No_of_seqs 191 out of 280
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpn_B SPT6, chromatin structu 35.5 36 0.0012 21.9 3.1 20 58-77 4-23 (26)
2 1rwu_A Hypothetical UPF0250 pr 11.1 5.2E+02 0.018 21.8 6.3 47 390-436 53-99 (109)
3 2guk_A Hypothetical protein PG 10.5 2E+02 0.0069 25.1 3.5 48 312-363 17-70 (120)
4 2peq_A ORF134; helix bundle, p 8.7 1.5E+02 0.0052 26.4 2.0 35 312-347 13-49 (134)
5 3ka1_A RBCX protein; chaperone 8.3 1.3E+02 0.0046 26.5 1.5 34 312-346 13-48 (126)
6 3hyb_A RBCX protein; rubisco, 7.2 2.2E+02 0.0075 25.9 2.4 33 311-344 32-66 (155)
7 2rbd_A BH2358 protein; putativ 7.1 9.5E+02 0.033 20.9 6.8 38 445-482 127-164 (171)
8 4dm5_A Osmotically inducible l 6.7 3.2E+02 0.011 23.3 3.0 46 36-87 26-72 (103)
9 3g2b_A Coenzyme PQQ synthesis 5.9 3.5E+02 0.012 22.1 2.8 19 458-476 75-93 (95)
10 2ebm_A RWD domain-containing p 5.8 1.6E+02 0.0053 24.7 0.7 16 112-128 59-74 (128)
No 1
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=35.54 E-value=36 Score=21.94 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=17.9
Q ss_pred EEEEEecCcceEEEEEcCCC
Q 010911 58 VLVERYGNGTARRFILDDEW 77 (497)
Q Consensus 58 ~~~E~~~~g~~~~y~~~~~~ 77 (497)
++.|.||-|..-+|+.++|.
T Consensus 4 lFyEIFGtG~EYrYile~~~ 23 (26)
T 2xpn_B 4 MFFEIFGTGEEYRYVLESDP 23 (26)
T ss_pred EEEEEecCCceEEEEeecCC
Confidence 68899999999999998774
No 2
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=11.12 E-value=5.2e+02 Score=21.83 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCEEEEEeccCCceEEEEEecCCCChHHHHHHHHHHH
Q 010911 390 VKKLIRIYAKEKYILMVNQSAGDFEVFVSFKVGATSLSVLRSVWQVY 436 (497)
Q Consensus 390 l~~Ll~~f~~E~YlL~~~~~~~~~~v~VvLk~~At~~D~LkA~~hA~ 436 (497)
+..+++.....+|-+..+++++..-+-|.+.--+++.|++.+.+.++
T Consensus 53 V~~vv~~~~p~d~~~~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L 99 (109)
T 1rwu_A 53 VVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEEL 99 (109)
T ss_dssp HHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCceecCCCCCeEEEEEEEEEECCHHHHHHHHHHH
Confidence 44444443322555566665442223444555799999999987765
No 3
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=10.50 E-value=2e+02 Score=25.13 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=35.9
Q ss_pred HHHHHHhhhhccccccccccHHHHHHHHHHHHhcC------CCCCcccccccCccccc
Q 010911 312 LVHLWLRYQSLSVLQFNTINLKRARILVKSHVLHT------SVPGCVDCNKEENILTW 363 (497)
Q Consensus 312 ~lHl~~nY~avr~v~l~TLN~~R~~iv~~~~~~~g------~Vpsp~~vn~~E~il~~ 363 (497)
.=|+|==-++||.+.|-|+|+.=...+++..-..| .+|++..|| ||+.
T Consensus 17 ~hhIYEy~KGvR~LvL~T~~~~~~~~~~~rL~~~~I~Y~iq~v~~~~kiN----lFFG 70 (120)
T 2guk_A 17 MHHIYEFEKGVRSMVLATLANDDIPYAEERLRSRQIPYFAQPTPNTERTN----LFFG 70 (120)
T ss_dssp HHHHHHHHHTSCSEEEEEEEGGGHHHHHHHHHHTTCCEEEECCTTSSEEE----EEEE
T ss_pred HHHHHHHhhhhHHHHHHhcCHhhHHHHHHHHHhCCCCEEEEEcCCCCeEE----EEeC
Confidence 45888888999999999999998888888665554 455655444 6653
No 4
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=8.68 E-value=1.5e+02 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHHHHhhhhcccc--ccccccHHHHHHHHHHHHhcCC
Q 010911 312 LVHLWLRYQSLSVL--QFNTINLKRARILVKSHVLHTS 347 (497)
Q Consensus 312 ~lHl~~nY~avr~v--~l~TLN~~R~~iv~~~~~~~g~ 347 (497)
.++-|..|+|||.| |+...|+.++. =+.+|+..+.
T Consensus 13 ~L~~yfTy~AvR~Vl~QL~e~np~~~~-wL~~F~~~~~ 49 (134)
T 2peq_A 13 TLQSYLTYQAVRLISQQLSETNPGQAI-WLGEFSKRHP 49 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHH-HHHHHHhcCC
Confidence 56788899999998 88899998765 4555776654
No 5
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=8.31 E-value=1.3e+02 Score=26.49 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=26.3
Q ss_pred HHHHHHhhhhcccc--ccccccHHHHHHHHHHHHhcC
Q 010911 312 LVHLWLRYQSLSVL--QFNTINLKRARILVKSHVLHT 346 (497)
Q Consensus 312 ~lHl~~nY~avr~v--~l~TLN~~R~~iv~~~~~~~g 346 (497)
.+|-|..|+|||.| ++...|+.++ +=+.+|...+
T Consensus 13 ~L~~yfTY~Avr~Vl~QL~E~np~~~-~wL~~F~~~~ 48 (126)
T 3ka1_A 13 TLISYLTYQAVRTVIGQLAETDPPRS-LWLHQFTSQE 48 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHH-HHHHHHHHcC
Confidence 56788999999998 8999999665 4455577654
No 6
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=7.21 E-value=2.2e+02 Score=25.92 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhcccc--ccccccHHHHHHHHHHHHh
Q 010911 311 RLVHLWLRYQSLSVL--QFNTINLKRARILVKSHVL 344 (497)
Q Consensus 311 ~~lHl~~nY~avr~v--~l~TLN~~R~~iv~~~~~~ 344 (497)
..++-|..|+|||.| ++...|+.++ +=+.+|..
T Consensus 32 k~L~~YfTYqAvr~VLaQL~EtNP~~y-~wL~~F~s 66 (155)
T 3hyb_A 32 KTLQSYLTYQALRTVLAQLGETNPPLA-LWLHNFSA 66 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHc
Confidence 357788999999998 8999999665 44556776
No 7
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=7.11 E-value=9.5e+02 Score=20.89 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHhCCcccCcccc
Q 010911 445 FDNLSDWLSHSLLVMEDRFDDFIQQLKGAGWNTHQLNL 482 (497)
Q Consensus 445 ~~~~~~~l~eS~~~~~~~f~~Fl~~L~~~GW~td~~~L 482 (497)
+.++...+.+.+....+.+..+.+-+.++||-..-.+.
T Consensus 127 r~Dir~~f~~~~~~~~~~~~~i~~~m~~KGw~~~pP~~ 164 (171)
T 2rbd_A 127 REDVALMFSQFHMAKVQFGGKMLKLNKNKGWLIPPPLH 164 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCBC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc
Confidence 44577788888888899999999999999998655444
No 8
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=6.70 E-value=3.2e+02 Score=23.28 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=30.0
Q ss_pred CCCCchh-hhhhcCCCcCcCCeeEEEEEecCcceEEEEEcCCCceeeeecCCC
Q 010911 36 QSNLSEE-EDEAGNGRAQSQQHVVLVERYGNGTARRFILDDEWQVQTFDADHD 87 (497)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~~~~~~~~E~~~~g~~~~y~~~~~~~lq~~~~~~~ 87 (497)
+...+++ -..+|+++ . .+.-+++.|+.+.|+++.||+-|.+-|.-+
T Consensus 26 ~GMTk~qV~rigG~Ps-----S-~~~~~~~~GTC~nY~L~~dg~~q~Y~VsFd 72 (103)
T 4dm5_A 26 KGMSQQEVLRIGGTPS-----G-TQKRLMKPGSCNSYILNKDGQQQPFYVSFD 72 (103)
T ss_dssp TTCBHHHHHHHHCSCS-----E-EEECSSSSSEEEEEEEEETTEEEEEEEEEC
T ss_pred CCCCHHHHHHhcCCCc-----c-eEEEecCCceEeeEEeccCCceeeEEEEEC
Confidence 3333444 33456665 3 444456999999999999998887654443
No 9
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=5.91 E-value=3.5e+02 Score=22.10 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=16.2
Q ss_pred HHHHhHHHHHHHHHhCCcc
Q 010911 458 VMEDRFDDFIQQLKGAGWN 476 (497)
Q Consensus 458 ~~~~~f~~Fl~~L~~~GW~ 476 (497)
.+.+.-..|+++|.++||-
T Consensus 75 ~i~~DV~~FL~~L~~~g~I 93 (95)
T 3g2b_A 75 EIETDVIELTTTLHQKRLL 93 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCcCE
Confidence 4567788999999999995
No 10
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.84 E-value=1.6e+02 Score=24.72 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=12.2
Q ss_pred HHhhcCCCCCCCcCccc
Q 010911 112 KDFLLPAGFPGSVSDDY 128 (497)
Q Consensus 112 ~~~FLP~GYP~SVs~dY 128 (497)
..+-+|.+||+ +.|.+
T Consensus 59 L~v~~p~~YP~-~~P~i 74 (128)
T 2ebm_A 59 LKFTYSEKYPD-EAPLY 74 (128)
T ss_dssp EEEECCSSTTT-SCCEE
T ss_pred EEEEeCCCCCC-CCceE
Confidence 46789999999 45654
Done!