Query 010911
Match_columns 497
No_of_seqs 191 out of 280
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 16:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hyja2 a.121.1.1 (A:83-200) P 20.4 1.3E+02 0.0094 22.6 7.0 51 424-474 2-69 (118)
2 d2g7sa2 a.121.1.1 (A:77-192) P 20.1 1.3E+02 0.0094 22.4 6.9 51 423-474 1-68 (116)
3 d1rwua_ d.58.54.1 (A:) Hypothe 16.9 1.5E+02 0.011 21.8 6.3 49 388-436 29-77 (87)
4 d2gena2 a.121.1.1 (A:76-193) P 16.4 1.1E+02 0.008 22.6 5.6 51 424-474 2-66 (118)
5 d1vi0a2 a.121.1.1 (A:78-194) H 16.0 1.8E+02 0.013 21.2 6.8 30 446-475 36-65 (117)
6 d1d7ya3 d.87.1.1 (A:309-405) N 14.7 35 0.0026 26.0 2.0 37 321-357 51-87 (97)
7 d1pb6a2 a.121.1.1 (A:86-211) H 12.4 2.3E+02 0.017 21.5 6.6 53 423-475 2-67 (126)
8 d1q1ra3 d.87.1.1 (A:320-422) P 11.3 53 0.0039 25.3 2.2 37 321-357 49-85 (103)
9 d2guka1 d.360.1.1 (A:4-114) Hy 10.7 95 0.0069 24.8 3.5 35 312-346 11-45 (111)
10 d2o7ta2 a.121.1.1 (A:79-188) T 9.7 2.7E+02 0.02 21.1 6.1 51 425-475 3-61 (110)
No 1
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.44 E-value=1.3e+02 Score=22.56 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHH--HHhhhc---------------cCccchHHHHHHHHHHHHHhHHHHHHHHHhCC
Q 010911 424 TSLSVLRSVWQVY--WLHENR---------------ESFDNLSDWLSHSLLVMEDRFDDFIQQLKGAG 474 (497)
Q Consensus 424 t~~D~LkA~~hA~--~L~~~~---------------~~~~~~~~~l~eS~~~~~~~f~~Fl~~L~~~G 474 (497)
++.+-|+|++++. |+.... ..+..+.+.+++.+....+.|...+++.++.|
T Consensus 2 ~~~~rL~a~~~~~~~~~~~~~~~~GC~~~~~~~E~~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G 69 (118)
T d2hyja2 2 PGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKG 69 (118)
T ss_dssp TTHHHHHHHHHHHHHHHHSCSSTTSCHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCChhHhHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4678899998885 333221 12345678889999999999999999998888
No 2
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.09 E-value=1.3e+02 Score=22.36 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHHhhhc-----------------cCccchHHHHHHHHHHHHHhHHHHHHHHHhCC
Q 010911 423 ATSLSVLRSVWQVYWLHENR-----------------ESFDNLSDWLSHSLLVMEDRFDDFIQQLKGAG 474 (497)
Q Consensus 423 At~~D~LkA~~hA~~L~~~~-----------------~~~~~~~~~l~eS~~~~~~~f~~Fl~~L~~~G 474 (497)
+.|.+.|++|+.. |..... ...+.+...+++.++...+.+...+++.++.|
T Consensus 1 ~dP~~rL~a~~~~-~~~~~~~~~~~gCl~~~~a~E~~~~~~~v~~~~~~~~~~~~~~l~~~l~~a~~~g 68 (116)
T d2g7sa2 1 SDPLEQLRAYIGY-WEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQG 68 (116)
T ss_dssp CCHHHHHHHHHHH-HHHHHHHCSSCSCHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH-HHHHhhCCCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4689999999863 332110 11234567788888888888999998888877
No 3
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}
Probab=16.92 E-value=1.5e+02 Score=21.81 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCEEEEEeccCCceEEEEEecCCCChHHHHHHHHHHH
Q 010911 388 FKVKKLIRIYAKEKYILMVNQSAGDFEVFVSFKVGATSLSVLRSVWQVY 436 (497)
Q Consensus 388 ~~l~~Ll~~f~~E~YlL~~~~~~~~~~v~VvLk~~At~~D~LkA~~hA~ 436 (497)
..+..+++.+..+..-+..+++++..-+-+.+.--+++.+++.+.++.+
T Consensus 29 ~~v~~i~~~~~~~~~~~~~k~Ss~GkY~Svtv~i~~~s~eqv~~iY~~l 77 (87)
T d1rwua_ 29 DQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEEL 77 (87)
T ss_dssp HHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcceeecCCCCcEEEEEEEEEECCHHHHHHHHHHH
Confidence 3455666655544444455555433234455566799999999987765
No 4
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.38 E-value=1.1e+02 Score=22.60 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHH--HHhhhcc------------CccchHHHHHHHHHHHHHhHHHHHHHHHhCC
Q 010911 424 TSLSVLRSVWQVY--WLHENRE------------SFDNLSDWLSHSLLVMEDRFDDFIQQLKGAG 474 (497)
Q Consensus 424 t~~D~LkA~~hA~--~L~~~~~------------~~~~~~~~l~eS~~~~~~~f~~Fl~~L~~~G 474 (497)
|+++.||++++++ |..++.. ...+....+.+..+...+...+++++..+.|
T Consensus 2 s~~e~lr~~v~~~~~~v~~~p~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~g~~~G 66 (118)
T d2gena2 2 SAEETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEG 66 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6899999998887 3333211 1122334455555555666666666665555
No 5
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=16.01 E-value=1.8e+02 Score=21.20 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHhCCc
Q 010911 446 DNLSDWLSHSLLVMEDRFDDFIQQLKGAGW 475 (497)
Q Consensus 446 ~~~~~~l~eS~~~~~~~f~~Fl~~L~~~GW 475 (497)
+.....+.+..+.....+..++++.++.|=
T Consensus 36 ~~~~~~i~~~~~~~~~~~~~ii~~g~~~G~ 65 (117)
T d1vi0a2 36 LELRQKINEILKGYLNILDGILTEGIQSGE 65 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566777777788888888888888874
No 6
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=14.66 E-value=35 Score=25.99 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=31.0
Q ss_pred hccccccccccHHHHHHHHHHHHhcCCCCCccccccc
Q 010911 321 SLSVLQFNTINLKRARILVKSHVLHTSVPGCVDCNKE 357 (497)
Q Consensus 321 avr~v~l~TLN~~R~~iv~~~~~~~g~Vpsp~~vn~~ 357 (497)
.=|.+-.-++|+.|-....+..++.|..|+++++...
T Consensus 51 ~g~lvgv~~vn~~~~~~~~rrli~~~~~~~~~~LaD~ 87 (97)
T d1d7ya3 51 KGRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADP 87 (97)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHHSS
T ss_pred CCEEEEEEEeCCHHHHHHHHHHHHCCCCCCHHHhcCC
Confidence 4456667789999999999999999999998887653
No 7
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=12.37 E-value=2.3e+02 Score=21.46 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHHH-------------hhhccCccchHHHHHHHHHHHHHhHHHHHHHHHhCCc
Q 010911 423 ATSLSVLRSVWQVYWL-------------HENRESFDNLSDWLSHSLLVMEDRFDDFIQQLKGAGW 475 (497)
Q Consensus 423 At~~D~LkA~~hA~~L-------------~~~~~~~~~~~~~l~eS~~~~~~~f~~Fl~~L~~~GW 475 (497)
..|.+.|++|.++.+- .++..........+++.....-+.....++...++|-
T Consensus 2 ~~P~ealr~~i~~~~~~~~~~P~~~rl~~~E~~~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~ 67 (126)
T d1pb6a2 2 FAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGK 67 (126)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHCccHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5689999998888642 2222333334456666666666667778888888884
No 8
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}
Probab=11.30 E-value=53 Score=25.26 Aligned_cols=37 Identities=16% Similarity=-0.068 Sum_probs=30.8
Q ss_pred hccccccccccHHHHHHHHHHHHhcCCCCCccccccc
Q 010911 321 SLSVLQFNTINLKRARILVKSHVLHTSVPGCVDCNKE 357 (497)
Q Consensus 321 avr~v~l~TLN~~R~~iv~~~~~~~g~Vpsp~~vn~~ 357 (497)
.=+.+..-++|+.|...+.+..++.+..|+++++...
T Consensus 49 ~~~lvav~~vn~~~~~~~~r~li~~~~~~~~~~L~D~ 85 (103)
T d1q1ra3 49 GDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDE 85 (103)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCT
T ss_pred CCeEEEEEEeCCHHHHHHHHHHHHCCCCcCHHHhcCC
Confidence 4456677899999999999999999999998876543
No 9
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=10.66 E-value=95 Score=24.81 Aligned_cols=35 Identities=6% Similarity=0.029 Sum_probs=28.7
Q ss_pred HHHHHHhhhhccccccccccHHHHHHHHHHHHhcC
Q 010911 312 LVHLWLRYQSLSVLQFNTINLKRARILVKSHVLHT 346 (497)
Q Consensus 312 ~lHl~~nY~avr~v~l~TLN~~R~~iv~~~~~~~g 346 (497)
.=|+|==-++||.+.|-|+|+.=+..+++..-..|
T Consensus 11 ~hhiYE~~KGvR~L~L~T~~~~~~~~~~~rL~~~~ 45 (111)
T d2guka1 11 MHHIYEFEKGVRSMVLATLANDDIPYAEERLRSRQ 45 (111)
T ss_dssp HHHHHHHHHTSCSEEEEEEEGGGHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhcCHhHHHHHHHHHhhCC
Confidence 35788888999999999999999999888554433
No 10
>d2o7ta2 a.121.1.1 (A:79-188) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=9.65 E-value=2.7e+02 Score=21.14 Aligned_cols=51 Identities=25% Similarity=0.186 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHhh-------h-ccCccchHHHHHHHHHHHHHhHHHHHHHHHhCCc
Q 010911 425 SLSVLRSVWQVYWLHE-------N-RESFDNLSDWLSHSLLVMEDRFDDFIQQLKGAGW 475 (497)
Q Consensus 425 ~~D~LkA~~hA~~L~~-------~-~~~~~~~~~~l~eS~~~~~~~f~~Fl~~L~~~GW 475 (497)
|...++.|+|.+.=.. . ....++....+....+.+.+.+..+++..+++|=
T Consensus 3 P~~Al~~~~~~~ve~~~~~l~~al~~~~~~~~~~~~~~~r~~l~~~~~~ll~rA~~aG~ 61 (110)
T d2o7ta2 3 PEGVWTSFNQLLFDRGLGSLVPALAPESLDDLPDEVSALRRTTEKNTTTLINLAKQHGL 61 (110)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhHhhhHHHHhccccCcCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6778888888764211 1 1122333345677888999999999999999994
Done!