BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010912
         (497 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 13/370 (3%)

Query: 100 GMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEI 159
           G+  AL  +  Q  GA +   +     + ++  L VS+P+  + F T  I+  +  +  +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 160 STGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVF-KS 218
           +T    Y   +I ++ AY + Q L  F    +   P M+   I  LL+I + W+ V+ K 
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185

Query: 219 G---LESKGAALSITISNWVNVFFLAMYIKFSQ--ACIKTWTGFSAEALHDIISFIKLAL 273
           G   L   G  ++  I  W+ +  L  YI  S+  A +K +  F      ++I   +L  
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245

Query: 274 PSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSN 333
           P A  +  E   F +V LL    P      +   ++LN   +V+M  + +G A+S RV +
Sbjct: 246 PVAAALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303

Query: 334 ELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLL 393
           +LG  ++KGA +A  V +M  +       + T+L R     LY+  + V+    +++   
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363

Query: 394 ALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFF-----LHIGGMG 448
           A+   +D  Q + +G+ RG        +    +Y+ +G+P+  +           +G  G
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 423

Query: 449 LWMGIICGLS 458
            W+G I GLS
Sbjct: 424 FWLGFIIGLS 433


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 2/196 (1%)

Query: 270 KLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAIST 329
           K+  P  +   LE  +F  +V L        +    + ISL+   ++YMI   +G A + 
Sbjct: 245 KIGAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLSG--ILYMIPQSVGSAGTV 302

Query: 330 RVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKM 389
           R+   LG      AR    V ++          ++ +L R+    +Y+++  V+   + +
Sbjct: 303 RIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTV 362

Query: 390 MPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGL 449
           +    L    D  QC+ S A RG     +  +I+  A++  G+    L A+   +G  G 
Sbjct: 363 LLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGF 422

Query: 450 WMGIICGLSMQIIALV 465
           W  +I  L++  +ALV
Sbjct: 423 WTALIASLTIAAVALV 438


>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
          Length = 554

 Score = 28.5 bits (62), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 15/111 (13%)

Query: 295 LLPNPKLET-SVLSISLNTCW-----MVYMISVGLGGAISTRVSNELGAGNSKGARLALR 348
           ++   K+E+  + S  + TC+     + Y   + +GG +S     + G G ++ AR A+ 
Sbjct: 326 VIDKAKMESLGITSRDITTCFGGSLGIQYEDKINVGGGLSGDHCKKFGGGKTERARKAMA 385

Query: 349 VMIMIAITEGATVGITTILVRN-------VWGKLYSNEEEVIKYVAKMMPL 392
           V  +I+   G + G +  L +N        WG+       VI +  +M P+
Sbjct: 386 VEDIISRVRGGSSGWSGGLAQNRSTITYRSWGRSLKYNPVVIDF--EMQPI 434


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,536,672
Number of Sequences: 62578
Number of extensions: 449314
Number of successful extensions: 1106
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 6
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)