Query 010912
Match_columns 497
No_of_seqs 261 out of 2137
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.7E-56 3.7E-61 440.7 55.7 438 40-481 12-453 (455)
2 PRK10189 MATE family multidrug 100.0 4.9E-52 1.1E-56 413.1 55.0 433 41-476 25-467 (478)
3 PRK00187 multidrug efflux prot 100.0 4.5E-51 9.8E-56 406.4 56.1 427 41-470 6-443 (464)
4 PRK09575 vmrA multidrug efflux 100.0 2.9E-49 6.2E-54 393.0 53.2 424 41-470 8-435 (453)
5 PRK01766 multidrug efflux prot 100.0 9.1E-49 2E-53 391.5 56.3 433 40-475 7-446 (456)
6 PRK10367 DNA-damage-inducible 100.0 1.3E-48 2.9E-53 385.0 54.3 423 41-474 5-433 (441)
7 TIGR01695 mviN integral membra 100.0 5E-37 1.1E-41 311.6 52.0 413 47-471 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 1.4E-36 3E-41 307.4 48.0 415 48-471 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 3.1E-36 6.8E-41 290.6 43.1 338 53-393 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 4.4E-35 9.5E-40 289.3 45.5 405 47-470 3-411 (416)
11 KOG1347 Uncharacterized membra 100.0 2.6E-36 5.7E-41 294.6 34.1 447 41-489 24-470 (473)
12 PF03023 MVIN: MviN-like prote 100.0 1.6E-30 3.4E-35 256.9 49.9 386 75-471 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 1.4E-28 3E-33 238.1 51.3 420 45-472 7-438 (518)
14 PRK10459 colanic acid exporter 100.0 1.7E-28 3.6E-33 248.2 46.6 398 44-470 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 4.8E-26 1E-30 229.7 41.3 392 42-455 3-396 (480)
16 COG0534 NorM Na+-driven multid 99.9 1E-20 2.2E-25 187.0 28.7 210 261-473 12-223 (455)
17 PRK00187 multidrug efflux prot 99.9 1.7E-20 3.7E-25 187.1 28.3 207 261-471 5-215 (464)
18 PRK10367 DNA-damage-inducible 99.9 1.8E-20 3.9E-25 185.3 27.9 207 262-470 5-211 (441)
19 PRK01766 multidrug efflux prot 99.9 4.3E-20 9.3E-25 184.8 29.3 209 261-472 7-219 (456)
20 PRK10189 MATE family multidrug 99.9 3.2E-20 6.9E-25 185.3 28.1 207 261-470 24-236 (478)
21 PRK09575 vmrA multidrug efflux 99.9 1.2E-20 2.6E-25 187.9 24.3 209 261-471 7-215 (453)
22 PF01943 Polysacc_synt: Polysa 99.8 6.6E-17 1.4E-21 150.6 32.7 271 47-334 1-272 (273)
23 TIGR01695 mviN integral membra 99.8 6.7E-17 1.4E-21 164.3 29.5 204 41-246 219-427 (502)
24 TIGR00797 matE putative efflux 99.8 6.2E-17 1.4E-21 156.1 25.1 194 274-470 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.7 4.1E-18 8.8E-23 145.4 8.2 162 274-437 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 7.8E-15 1.7E-19 145.4 31.4 206 41-248 194-404 (451)
27 COG0728 MviN Uncharacterized m 99.7 6.3E-14 1.4E-18 136.7 34.4 231 42-281 229-464 (518)
28 TIGR02900 spore_V_B stage V sp 99.7 3E-15 6.6E-20 151.7 25.2 202 40-246 220-433 (488)
29 PF01554 MatE: MatE; InterPro 99.7 1.5E-17 3.3E-22 141.9 5.5 160 53-213 1-162 (162)
30 PF13440 Polysacc_synt_3: Poly 99.7 6.4E-13 1.4E-17 122.1 31.8 248 63-334 2-251 (251)
31 PRK10459 colanic acid exporter 99.6 7.4E-13 1.6E-17 134.2 34.1 199 41-245 203-403 (492)
32 PRK15099 O-antigen translocase 99.6 2.1E-13 4.5E-18 135.0 26.1 198 41-245 211-410 (416)
33 COG2244 RfbX Membrane protein 99.6 1.9E-12 4E-17 130.9 26.8 187 40-232 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.4 9.9E-10 2.2E-14 109.8 32.4 421 48-470 4-469 (549)
35 KOG2864 Nuclear division RFT1 99.2 2.8E-07 6E-12 86.3 35.7 419 43-470 6-448 (530)
36 KOG1347 Uncharacterized membra 99.2 1.8E-09 3.8E-14 106.5 20.8 207 262-472 24-231 (473)
37 PF07260 ANKH: Progressive ank 99.0 4.8E-06 1E-10 74.9 29.5 315 42-365 8-342 (345)
38 PF04506 Rft-1: Rft protein; 98.5 4.2E-05 9.1E-10 77.0 22.5 202 44-246 252-469 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 3E-05 6.6E-10 64.4 17.4 79 167-247 2-80 (146)
40 PF01943 Polysacc_synt: Polysa 98.2 0.00029 6.4E-09 65.2 21.4 186 271-470 4-190 (273)
41 PF14667 Polysacc_synt_C: Poly 98.1 1.7E-05 3.7E-10 65.9 9.2 79 390-471 2-80 (146)
42 COG4267 Predicted membrane pro 98.1 0.01 2.2E-07 55.1 36.3 322 92-440 71-414 (467)
43 PF07260 ANKH: Progressive ank 98.0 0.0039 8.6E-08 56.6 22.6 160 261-426 6-168 (345)
44 KOG2864 Nuclear division RFT1 98.0 0.003 6.6E-08 60.0 21.8 200 45-246 239-448 (530)
45 PF13440 Polysacc_synt_3: Poly 97.9 0.0037 8.1E-08 57.0 22.1 164 289-469 7-171 (251)
46 PRK01637 hypothetical protein; 91.6 12 0.00025 34.9 19.2 24 474-497 263-286 (286)
47 TIGR00822 EII-Sor PTS system, 71.2 84 0.0018 28.8 15.3 32 316-347 109-140 (265)
48 COG2211 MelB Na+/melibiose sym 67.9 1.4E+02 0.003 30.0 28.9 50 44-93 11-63 (467)
49 KOG2325 Predicted transporter/ 66.8 1.5E+02 0.0032 30.0 15.4 34 42-75 31-64 (488)
50 COG4267 Predicted membrane pro 63.2 1.5E+02 0.0032 28.6 21.4 141 312-469 68-209 (467)
51 PF05975 EcsB: Bacterial ABC t 60.8 1.7E+02 0.0037 28.6 16.5 39 338-376 88-126 (386)
52 PF04505 Dispanin: Interferon- 58.6 68 0.0015 23.3 6.9 40 321-360 34-73 (82)
53 PF05977 MFS_3: Transmembrane 54.7 2.6E+02 0.0056 28.7 37.8 48 46-93 11-60 (524)
54 COG4736 CcoQ Cbb3-type cytochr 47.1 46 0.00099 22.4 4.0 6 474-479 35-40 (60)
55 PF03547 Mem_trans: Membrane t 45.6 1.3E+02 0.0027 29.4 8.9 15 351-365 34-48 (385)
56 PF05975 EcsB: Bacterial ABC t 42.6 3.4E+02 0.0073 26.6 15.8 35 117-151 89-124 (386)
57 KOG2533 Permease of the major 42.1 3.9E+02 0.0085 27.2 32.4 64 178-241 154-221 (495)
58 TIGR00383 corA magnesium Mg(2+ 40.6 85 0.0018 29.6 6.6 55 415-473 254-317 (318)
59 PF01102 Glycophorin_A: Glycop 39.5 41 0.00088 26.5 3.4 6 465-470 85-90 (122)
60 PF14184 YrvL: Regulatory prot 38.8 2.1E+02 0.0045 23.1 13.0 102 126-229 5-107 (132)
61 PF04235 DUF418: Protein of un 38.2 2.3E+02 0.005 23.5 14.6 28 339-366 9-36 (163)
62 PRK09546 zntB zinc transporter 37.5 1E+02 0.0022 29.3 6.5 43 429-473 272-323 (324)
63 PF03904 DUF334: Domain of unk 35.8 1.6E+02 0.0034 26.0 6.6 39 117-155 142-180 (230)
64 PRK11085 magnesium/nickel/coba 35.6 1.2E+02 0.0027 28.6 6.6 54 416-473 253-315 (316)
65 PRK09757 PTS system N-acetylga 34.4 3.7E+02 0.0081 24.7 16.2 32 317-348 111-142 (267)
66 COG3715 ManY Phosphotransferas 34.1 3.7E+02 0.008 24.6 14.3 61 316-376 109-170 (265)
67 PF00558 Vpu: Vpu protein; In 32.9 66 0.0014 23.2 3.3 18 466-483 28-45 (81)
68 PF10160 Tmemb_40: Predicted m 31.4 4E+02 0.0088 24.2 11.8 81 338-421 109-189 (261)
69 PLN00028 nitrate transmembrane 27.6 6.4E+02 0.014 25.3 37.1 15 323-337 303-317 (476)
70 COG5393 Predicted membrane pro 27.0 3.1E+02 0.0066 21.4 6.5 42 441-482 77-118 (131)
71 COG1295 Rbn Ribonuclease BN fa 26.9 5.3E+02 0.012 24.2 16.8 43 328-370 122-166 (303)
72 PF07074 TRAP-gamma: Transloco 26.9 2.7E+02 0.0058 23.4 6.3 51 415-468 16-66 (170)
73 PF11446 DUF2897: Protein of u 26.2 80 0.0017 20.9 2.6 20 451-470 9-28 (55)
74 COG0598 CorA Mg2+ and Co2+ tra 25.2 4.1E+02 0.009 25.1 8.4 72 398-473 242-321 (322)
75 PF02117 7TM_GPCR_Sra: Serpent 24.5 4.6E+02 0.01 24.9 8.6 42 383-424 232-273 (328)
76 COG1955 FlaJ Archaeal flagella 20.9 8.9E+02 0.019 24.6 11.3 104 178-281 152-257 (527)
77 PF06305 DUF1049: Protein of u 20.8 1.7E+02 0.0037 19.9 3.7 9 455-463 30-38 (68)
78 PF06963 FPN1: Ferroportin1 (F 20.1 8.8E+02 0.019 24.2 19.7 56 300-365 37-92 (432)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.7e-56 Score=440.69 Aligned_cols=438 Identities=25% Similarity=0.392 Sum_probs=413.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912 40 VIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR 119 (497)
Q Consensus 40 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 119 (497)
.++..|+++++++|+++++++..+++++|+.++||+|++++++.+++.++..++ ..+..|++.|..+.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 467899999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 010912 120 MLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMI 198 (497)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 198 (497)
++++..++++.+.++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.++..++.++.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999887776 77999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CccchhHHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCHHHHHhHHHHHHHHhHH
Q 010912 199 CSAITALLHILVCWVLVFK-SG-LESKGAALSITISNWVNVFFLAMYIKFSQA-CIKTWTGFSAEALHDIISFIKLALPS 275 (497)
Q Consensus 199 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~p~ 275 (497)
.++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++..+++.++++ ......+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 46 999999999999999999999999987664 22222233334779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 010912 276 AIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAI 355 (497)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (497)
++++......+...+.+++++| ++.+|+|+++.++.++..+++.+++++.+|.+++++|+||++++++..+.+..+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHH
Q 010912 356 TEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSA 435 (497)
Q Consensus 356 ~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 435 (497)
+++...+++++++++++.++|++|+++.+.+..++++.++..++++++.+..+.+++.||++.+++.++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 010912 436 VLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNAL 481 (497)
Q Consensus 436 ~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (497)
++++... +|..|+|+++..++.+..++..+++++++|+++..+.+
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAAA 453 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 9998776 89999999999999999999999999998887755443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=4.9e-52 Score=413.11 Aligned_cols=433 Identities=16% Similarity=0.227 Sum_probs=400.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccch
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRM 120 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 120 (497)
.+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|+++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35589999999999999999999999999999999999999999999999887 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHH
Q 010912 121 LGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALG--QDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMM 197 (497)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 197 (497)
+++..++++.+++.++++.+++ +.+.++++.+++ .|+|+.+.+..|+++..++.++..+...+.+++|+.|+++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999999988877 668889999884 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----CCccchhHHHHHHHHHHHHHHHHHHHhhcc--ccccccCC-CCHHHHHhHHHHHH
Q 010912 198 ICSAITALLHILVCWVLVFKS----GLESKGAALSITISNWVNVFFLAMYIKFSQ--ACIKTWTG-FSAEALHDIISFIK 270 (497)
Q Consensus 198 ~~~~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~i~~ 270 (497)
+.+++..++|++++++++++. ++|+.|+++|+++++++..++..+++.+++ ..+.++++ +.+.+++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999864 789999999999999999888766665432 22222222 11235688999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010912 271 LALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVM 350 (497)
Q Consensus 271 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~ 350 (497)
.|+|.+++.........+.+.+++.++ ++++++|+++.++.++..++..|++++.+|.+++++|+||.+++++..+.+
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~ 341 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHV 341 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999888888888888887 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHh
Q 010912 351 IMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAV 430 (497)
Q Consensus 351 ~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 430 (497)
.++++++++.++++++++++++.++|++|+++.+.+..++++.++..++++++.+..+.+++.||++.++++++.+.|++
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v 421 (478)
T PRK10189 342 FWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGC 421 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Q 010912 431 GIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHE 476 (497)
Q Consensus 431 ~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 476 (497)
.+|+.++++...++|+.|+|++..+++.+..++.++++++.+|+++
T Consensus 422 ~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 422 RVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 9999999988888999999999999999999999999999999873
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=4.5e-51 Score=406.36 Aligned_cols=427 Identities=24% Similarity=0.307 Sum_probs=391.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccch
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRM 120 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 120 (497)
++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++.++. ..+..|++++..+.+||++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 66789999999999999999999999999999999999999999999999988 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 010912 121 LGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICS 200 (497)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 200 (497)
+++.++.++.+.++++++..++..+.++++.+++.++|+.+.+.+|+++..++.++..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999877775577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CCccchhHHHHHHHHHHHHHHHHHHHhhcccc-ccc-cCCCCHHHHHhHHHHHHHHhH
Q 010912 201 AITALLHILVCWVLVFKS----GLESKGAALSITISNWVNVFFLAMYIKFSQAC-IKT-WTGFSAEALHDIISFIKLALP 274 (497)
Q Consensus 201 ~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~~~~~p 274 (497)
+++.++|++++++|+++. ++|+.|+++|+++++.+..+...+++++++.. +.+ +++..+.+++.+|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999864 48999999999999988887776666543322 111 111222356789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 010912 275 SAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIA 354 (497)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (497)
.++++..+.....+++.++++++ +++++++++++++..+...+..+++++..+.+++++|+||++++++..+.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHchhhhhhhcCC--hH---HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 010912 355 ITEGATVGITTILVRNVWGKLYSN--EE---EVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYA 429 (497)
Q Consensus 355 ~~~~~~~~i~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 429 (497)
++++++.+++++++++++.++|++ |+ ++.+.+..++++.+++.+++.++.+..+++++.||++.+++.+++..|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999974 44 6788999999999999999999999999999999999999999999899
Q ss_pred hhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 430 VGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 430 ~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
+++|+.+++.+.+++|+.|+|+++.+++++..+....+++.
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999988877666644
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2.9e-49 Score=392.96 Aligned_cols=424 Identities=17% Similarity=0.175 Sum_probs=388.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHL-GELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR 119 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 119 (497)
++..|++++.++|.+++++...+++++|+.+++|+ |++++++++++.++..+. ..+..+++.+..+.++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45689999999999999999999999999999995 999999999999999988 7788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 010912 120 MLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMI 198 (497)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 198 (497)
+.++..+.++.+.++++++..++ +.+.++++.+++.+++..+.+.+|+++..++.++..+.....+++|+.|+++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988877 66899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccc-cccccCCCCHHHHHhHHHHHHHHhHHHH
Q 010912 199 CSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQA-CIKTWTGFSAEALHDIISFIKLALPSAI 277 (497)
Q Consensus 199 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~p~~~ 277 (497)
.++.+.++|+++++++++..++|+.|+++|+++++++..++..+++++++. .+.+.+.++ .+++.+|++++.|+|.++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELR-FNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCC-cCHHHHHHHHHhChhHHH
Confidence 999999999999999999888999999999999999999988777654432 222222222 356789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 010912 278 MICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITE 357 (497)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (497)
+.........+.+.+++++++ ++++++++++.++..+..++..+++++..|.+++++|+||++++++..+.++.+++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999998988873 5689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhhhhcCC-hHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHH
Q 010912 358 GATVGITTILVRNVWGKLYSN-EEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAV 436 (497)
Q Consensus 358 ~~~~~i~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~ 436 (497)
+++.+++++++++++.++|++ |+++.+.+.+++++.+++.+++++.......+++.||++.++..++.. +++++|..+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHH
Confidence 999999999999999999995 788999999999999999999999999999999999999999999876 678999999
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 437 LFAFFLHIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 437 ~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
+++.. +|+.|+|+++.+++.+..++..+++++
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 98654 699999999999999988877666654
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=9.1e-49 Score=391.47 Aligned_cols=433 Identities=23% Similarity=0.364 Sum_probs=397.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912 40 VIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR 119 (497)
Q Consensus 40 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 119 (497)
.++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++.... ..+..|++.+..+.+|+++|++|++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Confidence 367799999999999999999999999999999999999999999999987776 7788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 010912 120 MLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMI 198 (497)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 198 (497)
+.++.++.++.+.+..++++.++ +.+.++++.+++.++++.+.+..|+++..++.++..+...+++++++.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999888777 55778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc----CCccchhHHHHHHHHHHHHHHHHHHHhhccccc-c-ccCCCCHHHHHhHHHHHHHH
Q 010912 199 CSAITALLHILVCWVLVFKS----GLESKGAALSITISNWVNVFFLAMYIKFSQACI-K-TWTGFSAEALHDIISFIKLA 272 (497)
Q Consensus 199 ~~~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~~~~ 272 (497)
.++++.++|++++++++++. ++|+.|+++++.+++++..++..++.+++++.+ . .+.++.+.+++.+|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 99999999999999998642 579999999999999999999888876544321 1 12222223567899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 010912 273 LPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIM 352 (497)
Q Consensus 273 ~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 352 (497)
+|.+++...+...+.++..++++++ ++++++++++.++.++..++..+++.+..|.+++++|+||++++++..+.+..
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999987 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhH
Q 010912 353 IAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGI 432 (497)
Q Consensus 353 ~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 432 (497)
+++.++++.+++++.+++++.++|++|+++.+.+..++++..+..+++.++....+++++.||++.+++.++++.|++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i 403 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGL 403 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhCCcHH
Q 010912 433 PSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDH 475 (497)
Q Consensus 433 ~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 475 (497)
|..+++...+++|..|+|+++.+++.+..++.++++++.+|+.
T Consensus 404 ~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 404 PLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888899999999999999999998888887766554
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=384.99 Aligned_cols=423 Identities=15% Similarity=0.151 Sum_probs=372.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHL-GELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR 119 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 119 (497)
.+..|+++++++|.++++++..+++.+|+.+++|+ |++++++++++.++..+. ..+..|++.+..+.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45578999999999999999999999999999998 678999999999999998 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 010912 120 MLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMI 198 (497)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 198 (497)
++++..++++.++++++++..++ ..+.++++.+++.++++.+.+.+|+++..++.++..+..++.+++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988776 56888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccc-cccCCCCHHHHHhHHHHHHHHhHHHH
Q 010912 199 CSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACI-KTWTGFSAEALHDIISFIKLALPSAI 277 (497)
Q Consensus 199 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~p~~~ 277 (497)
.++++.++|++++++++++.++|+.|+++|+++++++..++..++++++++.+ .+.+.++...++.+|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999888877776533222 11111121113478999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 010912 278 MICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITE 357 (497)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (497)
+.......+.+.+.++++++ ++++++|+++.++.++..++..|++++.+|.+++++|+||++++|+..+.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCc---chhhHHHHHHHHHHhhHhH
Q 010912 358 GATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGW---QNLCAYINLGAYYAVGIPS 434 (497)
Q Consensus 358 ~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~~ 434 (497)
+.+.++.++++++++..+|++|+++.+.+..++++.++..+...........+++.+| ++.+++++.+..|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999998764433345455555666665 99999999988654222
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhCCcH
Q 010912 435 AVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTNWD 474 (497)
Q Consensus 435 ~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~ 474 (497)
. .+.+|+.|+|++..+++.+..++..++++++ |+
T Consensus 400 ---~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~ 433 (441)
T PRK10367 400 ---T--LPWLGNHGLWLALTVFLALRGLSLAAIWRRH-WR 433 (441)
T ss_pred ---H--HHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 1 1247999999999999999999888777665 64
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5e-37 Score=311.64 Aligned_cols=413 Identities=14% Similarity=0.114 Sum_probs=347.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhcCcccchHHH
Q 010912 47 QIWLAGPLIAVSLLQYCLQVISIMFVGH-LGELAL-SSASIASSFASVSGFSVL-LGMGSALETLCGQAFGAKQYRMLGI 123 (497)
Q Consensus 47 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~ 123 (497)
+.|.+.-..++++++.+++++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788899999999999999999999999 799999 899999999877633333 578888777776654322 56776
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHhhHHHHHHc--CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 010912 124 HTQRAMLTLLAVSIP-LAII-WFYTSNILIAL--GQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMIC 199 (497)
Q Consensus 124 ~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (497)
.+.+++......+.+ ..++ +++++++..++ +.+++..+.+.+|++++.++.++..+..+.++++|+.+|++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 677766655544443 3444 55777887877 4466777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhH--HHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHH
Q 010912 200 SAITALLHILVCWVLVFKSGLESKGAA--LSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAI 277 (497)
Q Consensus 200 ~~~~~~~~i~~~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~ 277 (497)
+++.+++++...+++.. ++|..|++ +++++++.+..++.+++.++++. +.+ .+++ .+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLK-PRFN-FRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccc-CcCC-CCChhHHHHHHHHHHHHH
Confidence 99998887765444444 78999988 99999999998888777755431 111 1111 145678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 010912 278 MICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYM-ISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAIT 356 (497)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (497)
++...++...+|+.+.+.++ ++++++|+.+.++.++... +..+++++..|.+++++++||.+++++.++++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998866665 6789999999999988765 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHchhhhhhhcCC----hHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhH
Q 010912 357 EGATVGITTILVRNVWGKLYSN----EEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGI 432 (497)
Q Consensus 357 ~~~~~~i~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 432 (497)
+++|.+++++++++++..++.+ |++.++.+..++++++++.++.+++......+++.||+|.+++.+... .++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHH
Confidence 9999999999999999999876 557788999999999999999999999999999999999999999998 57898
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 010912 433 PSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATT 471 (497)
Q Consensus 433 ~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 471 (497)
++.+++.. .+|..|+|+++.+++.+..++..++.+|+
T Consensus 392 ~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888843 47999999999999999988887777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.4e-36 Score=307.38 Aligned_cols=415 Identities=15% Similarity=0.144 Sum_probs=348.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchHHHHHH
Q 010912 48 IWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQ 126 (497)
Q Consensus 48 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 126 (497)
.|.+.|.+++++...+.+++|+.+++| +|+|++|+++.+.++..++......|++++..+.++++.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 7999999999999999887455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010912 127 RAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITAL 205 (497)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 205 (497)
+++.+.+..+++..++ +.+.+++...+..+++. ..+++++.+..++..+....++.+|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888776 45666666666555443 346778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cCCccchhHHHHHHHHHHHHHHHHHHHhhcccccc--ccCCCCHHHHHhHHHHHHHHhHHHHH
Q 010912 206 LHILVCWVLVFK-----SGLESKGAALSITISNWVNVFFLAMYIKFSQACIK--TWTGFSAEALHDIISFIKLALPSAIM 278 (497)
Q Consensus 206 ~~i~~~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~p~~~~ 278 (497)
+++.++..++.. .+.++.|+++++.+++.+..+...++.+++++.+. ++.+..+.+++.+|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776655542 24567788899999999999887776654433221 11112233567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC--c---h---hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010912 279 ICLEYWSFEMVVLLSGLLPN--P---K---LETSVL-SISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRV 349 (497)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~--g---~---~~~~~~-~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~ 349 (497)
+....+...+|+.++++... | . ...+.| +++.++..+...+..+++++..|.+++++|+||.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988875421 1 1 223333 4566777888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 010912 350 MIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYA 429 (497)
Q Consensus 350 ~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 429 (497)
..++...++.|+++++.++++++..++.+++ ++.++++++++..++..++......+++.||+|..++.++.. .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 9999999999999999999999999988643 367889999999999999999999999999999999999998 57
Q ss_pred hhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 010912 430 VGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATT 471 (497)
Q Consensus 430 ~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 471 (497)
+++++.+.+...+.+|+.|+|+++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887544678999999999999999998888777653
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=3.1e-36 Score=290.55 Aligned_cols=338 Identities=32% Similarity=0.529 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchHHHHHHHHHHHH
Q 010912 53 PLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTL 132 (497)
Q Consensus 53 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 132 (497)
|.+++++...+.+.+|+.+++++|++++++++++.++..+. ..+..|++++..+.++++.|++|+|+.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988887 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 010912 133 LAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVC 211 (497)
Q Consensus 133 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 211 (497)
...+++.+++ +++.+++..+++.+++..+.+..+++++.++.++..+.....+++++.||++.+.+.++++.++++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998877 668889998888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010912 212 WVLVF-KSG-LESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMV 289 (497)
Q Consensus 212 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~ 289 (497)
+++++ .++ +|+.|+++++.+++++..++..++.+++++.+.+|++..+.+++..|++++++.|.+++++..++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 556 7899999999999999999888777654433333322223356789999999999999999999999999
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q 010912 290 VLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVR 369 (497)
Q Consensus 290 ~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 369 (497)
+.+++.++ ++++++|+++.++.++...+..+++++..|.++++++++|.++.++..+++.++.+++++++++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988876 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCChHHHHHHHHHHhHHH
Q 010912 370 NVWGKLYSNEEEVIKYVAKMMPLL 393 (497)
Q Consensus 370 ~~i~~l~~~~~~~~~~~~~~l~i~ 393 (497)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999989888888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4.4e-35 Score=289.33 Aligned_cols=405 Identities=11% Similarity=0.024 Sum_probs=342.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchHHHHH
Q 010912 47 QIWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHT 125 (497)
Q Consensus 47 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 125 (497)
+.|.+.+...++++..+.+++...+++| +|++++|.++...++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 79999999999999998874555889999989999988 67888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010912 126 QRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITA 204 (497)
Q Consensus 126 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 204 (497)
++++.+.+..+++++++ +.+.+++...+..+++. ..+..+..+..++..+.....+.+|+.++++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877 66888888877666542 23455566666667788899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHHHHHHHHH
Q 010912 205 LLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYW 284 (497)
Q Consensus 205 ~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~ 284 (497)
++|+.+ .++.+. ..|+.|+++|+++++.+..+...+++++++..+.+..+++. +++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444442 23999999999999999988777766554432222112222 567899999999999999999999
Q ss_pred HHHHHHHHHh-cCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 010912 285 SFEMVVLLSG-LLPNPKLETSVLSISLNTCWM-VYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVG 362 (497)
Q Consensus 285 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (497)
....++.+++ .++ ++++|+|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 555 8899999999999885 5788999999999999985 6789999999999999999999999
Q ss_pred HHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHHhh
Q 010912 363 ITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFL 442 (497)
Q Consensus 363 i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 442 (497)
+.+++++++++.++.+|+ ++.+.+++++++++.++...+......+.+.++++.....++.. .++++++.+++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999999877 77789999999999999988888888888888888888877776 678889999884 4
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 443 HIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 443 ~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
.+|..|++++..+++.+..++.....++
T Consensus 384 ~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998877665543
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=294.57 Aligned_cols=447 Identities=44% Similarity=0.760 Sum_probs=424.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccch
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRM 120 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 120 (497)
..+.|++++++.|..+..+...+.+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67789999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 010912 121 LGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICS 200 (497)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 200 (497)
...+.+++..+....+++.+.++.+.+++...++.++++...+..|.++..+..+..........++|++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHHHHH
Q 010912 201 AITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMIC 280 (497)
Q Consensus 201 ~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 280 (497)
....++++.+++++++..++|..|++++..+++++....+..|..... ....|..+... ++.+++++++++|..+...
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999999986554 55566666665 8899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 010912 281 LEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGAT 360 (497)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (497)
++++.+.+..+..|.+++...+++..++..++....++++.+++.+...++++.+|+++++.+|.....+...++.++..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998767899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHH
Q 010912 361 VGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAF 440 (497)
Q Consensus 361 ~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 440 (497)
.+..+....+.+..+|++|+++.+...+..++++...++++.+.+..+..++.|+++...++++....++++|+.+.+..
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhccccc
Q 010912 441 FLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALHRAQRTDS 489 (497)
Q Consensus 441 ~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (497)
..++|..|+|.++..+..+..........+.+|++..++..+|....+.
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~ 470 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLV 470 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhcc
Confidence 8889999999999999888888888888899999999999888775553
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.6e-30 Score=256.86 Aligned_cols=386 Identities=15% Similarity=0.143 Sum_probs=335.8
Q ss_pred cC-hhHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 010912 75 LG-ELALSSASIASSFASVSGFSVL-LGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAII-WFYTSNILI 151 (497)
Q Consensus 75 lg-~~~~~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 151 (497)
+| .++..+|..+..+..++...+. .+++++..|..++.. ++++++.++..++...+....+++++++ ++++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 5577899999999999844444 468999999999998 7888899999999888888888888777 778899988
Q ss_pred Hc--CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCc---cchhH
Q 010912 152 AL--GQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLE---SKGAA 226 (497)
Q Consensus 152 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~~ 226 (497)
.+ +.+++..+.+.+.++++.+..++.++..++.+++++++|+..+....++.++..+...+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 87 446788899999999999999999999999999999999999999999988876665555444 456 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHH
Q 010912 227 LSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVL 306 (497)
Q Consensus 227 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 306 (497)
+|.+++.++..++.....+|.+...+...++ +.+..|++++...|..++....++...+++.+.+.++ +..++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDW---RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 9999999999999888886544331111111 2356899999999999999999999999999999988 5589999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcC----ChHH
Q 010912 307 SISLNTCWMVY-MISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYS----NEEE 381 (497)
Q Consensus 307 ~~~~~i~~~~~-~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~----~~~~ 381 (497)
+.+.++.+++. .+..+++++..|.++++..++|.++.++..++.++....+.+|+++++..+++++++++. -|.+
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999977 456799999999999999999999999999999999999999999999999999999875 2566
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 010912 382 VIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQI 461 (497)
Q Consensus 382 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~ 461 (497)
..+....++.+++++.++.++...+...+++.||+|.+++++... .++++.+.+++ .+.+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l--~~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILL--VPFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999998 68899888777 455899999999999999999
Q ss_pred HHHHHHHHhC
Q 010912 462 IALVTVIATT 471 (497)
Q Consensus 462 ~~~~~~~~~~ 471 (497)
++.++..+|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 8888887775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=1.4e-28 Score=238.12 Aligned_cols=420 Identities=13% Similarity=0.094 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh-hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhhcCcccchH
Q 010912 45 TKQIWLAGPLIAVSLLQYCLQVISIMFVGH-LGE-LALSSASIASSFASVSGFSVLLG-MGSALETLCGQAFGAKQYRML 121 (497)
Q Consensus 45 k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~-~~~~~~~~~~~i~~~~~~~~~~g-~~~~~~~~~s~~~g~~~~~~~ 121 (497)
.+++|-++-....++++.+.+++...+++. +|. ....++.++..+.+++.-.+..| ++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 346666777777888889999999999999 786 67789999999999886665544 689999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHH
Q 010912 122 GIHTQRAMLTLLAVSIPLAII-WFYTSNILIAL-GQ--DHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMM 197 (497)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 197 (497)
++..+........+.++++++ .++.+.+++.. +. +++....+....+++.+..++.++.....+.+++.+++..+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777777775666677777766 55777777444 32 233333678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHH
Q 010912 198 ICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAI 277 (497)
Q Consensus 198 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~ 277 (497)
+..+..++..+.....+.........+.+|+..++.+++.++.+..++|.+-.......+ +.+..|++.+.-.|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHHHH
Confidence 999999888876666555543223668899999999999999999998765333322222 22678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 010912 278 MICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVY-MISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAIT 356 (497)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (497)
+....++...+|+.+.+.+. +-.++.++.++++.++.. .+..+++++..|.+|++..++|+++.++..+.+++++.+
T Consensus 244 ~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 448999999999999977 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHchhhhhhhcCC----hHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhH
Q 010912 357 EGATVGITTILVRNVWGKLYSN----EEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGI 432 (497)
Q Consensus 357 ~~~~~~i~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 432 (497)
+++|.++++.++++++++++.. +++....+.+.+..++++.++..+..++...+++.+|+|.|+++++++ .++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHH
Confidence 9999999999999999998742 455688899999999999999999999999999999999999999998 68899
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhCC
Q 010912 433 PSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTN 472 (497)
Q Consensus 433 ~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 472 (497)
.+++.+ .+.+|..|++.+..++..++..+.++..+|+.
T Consensus 401 ~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 401 LLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 898666 44589999999999998888887777776653
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=1.7e-28 Score=248.21 Aligned_cols=398 Identities=11% Similarity=0.079 Sum_probs=320.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchHH
Q 010912 44 ATKQIWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLG 122 (497)
Q Consensus 44 ~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~ 122 (497)
.++..+.+.+..++++...+.+++...+++| +||+++|.++.+..+.++.......|++++... . +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---ccCC--H
Confidence 4678889999999999999999999999999 799999999999999999866778899887532 1 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 010912 123 IHTQRAMLTLLAVSIPLAIIW-FYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSA 201 (497)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 201 (497)
+...+.+.+....++++.++. .+.+++...++ +++. ...+.+..+..++..+...+.+.++..++++.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 345566667777777666654 35555544444 3332 34567777778888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHHHHHH
Q 010912 202 ITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICL 281 (497)
Q Consensus 202 ~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 281 (497)
...+....+.+.+... +.|..+.+++.++++.+..++..+..++ ++ +.+ .+ .+++..|++++++.|...+++.
T Consensus 150 ~~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~-~~~---~~-~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFGRK-IY-RPA---LH-FSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHhcc-cC-Ccc---ce-ecHHHHHHHHhhhHHHHHHHHH
Confidence 8888877776666553 7789999999999988877655433322 21 111 11 1356789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 010912 282 EYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYM-ISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGAT 360 (497)
Q Consensus 282 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (497)
.++....|+.+++.+. |++++|.|+.+.++.+.... +...++++..|.+++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887 48999999999999987554 4556788999999985 578899999999999999999999
Q ss_pred HHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHH
Q 010912 361 VGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAF 440 (497)
Q Consensus 361 ~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 440 (497)
+++++.+++++++.++.+++ ++.+.+.++++++..++..+.......+++.||+|..++.+++. .++.+|..+.+.
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~- 375 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGG- 375 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHH-
Confidence 99999999999999988766 88899999999999999999999999999999999999999887 566777766663
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 441 FLHIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 441 ~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
+.+|..|+++++.+++.+......+..+|
T Consensus 376 -~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 -QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999988777776634
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=4.8e-26 Score=229.73 Aligned_cols=392 Identities=16% Similarity=0.176 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccch
Q 010912 42 EEATKQIWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRM 120 (497)
Q Consensus 42 ~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 120 (497)
+..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++.+++......|++.+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 346788999999999999999999999999999 7999999999999999999667779999999999999876555554
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 010912 121 LGIH-TQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMIC 199 (497)
Q Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (497)
.... ...........+.+......+..+. .+.....+.++.+..+.........+.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI----------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444443333333333332222211 1223344677889999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHHHH
Q 010912 200 SAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMI 279 (497)
Q Consensus 200 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 279 (497)
.+.+ ..-+...+.+. ........++.+++..........+.+++++...+ ...+. .++..|+.+++++|...++
T Consensus 153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-PILRF-SLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cccCc-hhHHHHHHHHHhhHHHHHH
Confidence 4444 22222222222 13456677777787777776666665422221111 11111 4688999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 010912 280 CLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGA 359 (497)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (497)
....+....|+++++.+. |++++|.|+.+.++......+..+++++..|.+++.+.++|.++.++..+++.++...++.
T Consensus 227 ~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHH
Q 010912 360 TVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFA 439 (497)
Q Consensus 360 ~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 439 (497)
|..+++.++++++..++.+++ +..+...+++++++.++..+.......+++.|+++..++.+.+. .+.++.+.+.+
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~l- 381 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLL- 381 (480)
T ss_pred HHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHH-
Confidence 999999999999999988876 66699999999999999999999999999999999999999998 57788888887
Q ss_pred HhhcCCchhHHHHHHH
Q 010912 440 FFLHIGGMGLWMGIIC 455 (497)
Q Consensus 440 ~~~~~g~~g~~~a~~i 455 (497)
.+.+|..|+..+.+.
T Consensus 382 -i~~~g~~g~~~a~~~ 396 (480)
T COG2244 382 -IPRFGLIGAAIATAS 396 (480)
T ss_pred -HHhhhhhhHHHHHHH
Confidence 445788898888833
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=1e-20 Score=186.99 Aligned_cols=210 Identities=20% Similarity=0.247 Sum_probs=200.0
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010912 261 ALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNS 340 (497)
Q Consensus 261 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~ 340 (497)
.++..|+++++++|..++++.......+|++++++++ ++++++-++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3468999999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 010912 341 KGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCA 420 (497)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 420 (497)
+++++..+.++.++.+++++..+..+.+++++..++.+++++.+.+..|+++..++.++..++.....++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHh-hc-CCchhHHHHHHHHHHHHHHHHHHHHHhCCc
Q 010912 421 YINLGAYYAVGIPSAVLFAFF-LH-IGGMGLWMGIICGLSMQIIALVTVIATTNW 473 (497)
Q Consensus 421 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 473 (497)
+.+++. .++|+.+.+++.+. .+ +|+.|+++|+++++.+..++.+++++|++.
T Consensus 170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999998 68999999999877 45 899999999999999999998888877653
No 17
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=1.7e-20 Score=187.14 Aligned_cols=207 Identities=15% Similarity=0.071 Sum_probs=188.7
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010912 261 ALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNS 340 (497)
Q Consensus 261 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~ 340 (497)
+++..|++++.++|.+++++...+...+|+.++++++ ++++++++++.++..+...+..+++++..|.+++++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 5678999999999999999999999999999999987 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 010912 341 KGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCA 420 (497)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 420 (497)
+++++..+.++.+..+++++..+.++ +.+++..+++.|+|+.+.+..++++..++.++..+.....+++++.|+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877766 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHh----hcCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 010912 421 YINLGAYYAVGIPSAVLFAFF----LHIGGMGLWMGIICGLSMQIIALVTVIATT 471 (497)
Q Consensus 421 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 471 (497)
+.+++. .++++++.+++... |++|+.|+++++.++.....+...++++++
T Consensus 162 ~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 162 VISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998 57799998887542 358999999999999887776655555543
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.88 E-value=1.8e-20 Score=185.25 Aligned_cols=207 Identities=13% Similarity=0.108 Sum_probs=192.8
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 010912 262 LHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSK 341 (497)
Q Consensus 262 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~ 341 (497)
++..|+++++++|..++++.......+|+.++++++ |++++++.+++.++..+...+..+++.+..+.+++++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356889999999999999999999999999999986 3778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHH
Q 010912 342 GARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAY 421 (497)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 421 (497)
++++..+.++.++.+++++..+....+.+++..+++.|+++.+.+.+++++..++.++..+.......+++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 422 INLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 422 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
.+++. .++++++.+++.+.+++|+.|+++|+.+++.+..++..+++++
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 5889999999987778999999999999999988776655544
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.88 E-value=4.3e-20 Score=184.85 Aligned_cols=209 Identities=15% Similarity=0.118 Sum_probs=193.4
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010912 261 ALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNS 340 (497)
Q Consensus 261 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~ 340 (497)
.++.+|+++++++|..++++...+...+|..++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 5678999999999999999999999999999999987 77899999999998888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 010912 341 KGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCA 420 (497)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 420 (497)
++.++..+.++.+++.++++.+++++++++++..++..|++..+.+..++++.+++.++..+......++++.|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHh----hcCCchhHHHHHHHHHHHHHHHHHHHHHhCC
Q 010912 421 YINLGAYYAVGIPSAVLFAFF----LHIGGMGLWMGIICGLSMQIIALVTVIATTN 472 (497)
Q Consensus 421 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 472 (497)
+.+++. .++++++.+++.+. +++|+.|+++++.+++.+..++..++.+|++
T Consensus 165 ~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 165 VIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999998 57899998887642 4689999999999999999888877766543
No 20
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=3.2e-20 Score=185.26 Aligned_cols=207 Identities=17% Similarity=0.127 Sum_probs=191.6
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010912 261 ALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNS 340 (497)
Q Consensus 261 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~ 340 (497)
+.+..|++++.++|.+++++.......+|+.++++++ ++++++++++.++..+...+..+++.+..+.+++++|+||+
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~ 101 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3466999999999999999999999999999999987 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcC--ChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchh
Q 010912 341 KGARLALRVMIMIAITEGATVGITTILVRNVWGKLYS--NEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNL 418 (497)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 418 (497)
+++++..+.++.++++++++.+++.+++++++..++. .|+++.+.+..++++..++.++..+.....+++++.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 58899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHhHHHHHHHh----hcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 419 CAYINLGAYYAVGIPSAVLFAFF----LHIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 419 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
+++++++. .++++++.+++.+. +++|+.|+|+++.+++.+..++..+++.+
T Consensus 182 ~~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 182 PLLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred hHHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999986 68899998888653 47899999999999999988776555543
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=1.2e-20 Score=187.92 Aligned_cols=209 Identities=12% Similarity=0.084 Sum_probs=194.9
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 010912 261 ALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNS 340 (497)
Q Consensus 261 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~ 340 (497)
+++..|++++.++|..++++...+...+|+.+++++. |++++++++++.++..+...+..+++.+..+.+++++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 3467899999999999999999999999999999973 278999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 010912 341 KGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCA 420 (497)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 420 (497)
|++++..+.++.++.+++++.+++...+++++..+++.|+++.+.+..++++..++.++..+.......+++.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 010912 421 YINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATT 471 (497)
Q Consensus 421 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 471 (497)
..++.+ .++++++.+++...+++|+.|+++++.+++.+..++..++++++
T Consensus 166 ~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999998 58899999999877789999999999999999988876666543
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.82 E-value=6.6e-17 Score=150.64 Aligned_cols=271 Identities=17% Similarity=0.180 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchHHHHH
Q 010912 47 QIWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHT 125 (497)
Q Consensus 47 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 125 (497)
+.|.+.....+++...+.+++...+++| +|+|++|.++....+.+++......|++++..+.+++...+ +++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888999999999999999999999 79999999999999999885566999999999999886432 34455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010912 126 QRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITAL 205 (497)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 205 (497)
.......++.+++..++.... ..++.++.. ..+........++........+++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIA----SFFGNPSLS----LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444433332221 133333221 112222222225778888899999999999999999999998
Q ss_pred HHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 010912 206 LHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWS 285 (497)
Q Consensus 206 ~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~ 285 (497)
+......+++.. +.+..+..++..++..+..++..++.+|+.+ .+ ....+++..|++++++.|..++++...+.
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PR---FSFFSKKFFKEILRFGLPLFLSSLLSWLY 224 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc---ccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776666664 3458889999999999998888888765442 11 12224688999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010912 286 FEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNE 334 (497)
Q Consensus 286 ~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~ 334 (497)
...|.++++.+. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 225 ~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 225 SQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 499999999999999999999999999999999985
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.80 E-value=6.7e-17 Score=164.33 Aligned_cols=204 Identities=16% Similarity=0.107 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccch
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRM 120 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 120 (497)
++..|++++.+.|..+++....+...+|+.+.+++|++++++|+.+..+..+....+..+++++..|.++++.|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45689999999999999999999999999886668999999999999999887345678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhH
Q 010912 121 LGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQ----DHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFP 195 (497)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (497)
.++..+.+......++++.+++ +.++++++..+.+ +++..+.+..++++++++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999988877 6689999988754 4577888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 010912 196 MMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKF 246 (497)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 246 (497)
+++.++...+++++++++++. .+|..|+++++.+++.+..++..++.+|
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 5799999999999999999988877754
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.78 E-value=6.2e-17 Score=156.09 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010912 274 PSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMI 353 (497)
Q Consensus 274 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 353 (497)
|.+++++...+...+|+.++++++ ++++++|+++.++..+...+..+++++..|.+++++|++|+++.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778899999999999999999987 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHh
Q 010912 354 AITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIP 433 (497)
Q Consensus 354 ~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 433 (497)
...++++.+++++++++++.+++..|++..+.+..++++++++.++.+++......+++.||++...+.+++. .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987788888999999999999999999999999999999999999999988 477888
Q ss_pred HHHHHHH-hhc-CCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 434 SAVLFAF-FLH-IGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 434 ~~~~l~~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
+.+++.. ..+ +|+.|+++++.++..+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765 445 679999999999999988877766655
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.74 E-value=4.1e-18 Score=145.41 Aligned_cols=162 Identities=23% Similarity=0.414 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010912 274 PSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMI 353 (497)
Q Consensus 274 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 353 (497)
|.+++++...+...+++.++++++ ++++++++++.++..+...+..+++++..|.+++++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999996 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHh
Q 010912 354 AITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIP 433 (497)
Q Consensus 354 ~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 433 (497)
+..++++.++.+.++++++..+|++|++..+.+.+++++..+..++..+.....+++++.||++..++.+.+..|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 010912 434 SAVL 437 (497)
Q Consensus 434 ~~~~ 437 (497)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8875
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.73 E-value=7.8e-15 Score=145.40 Aligned_cols=206 Identities=17% Similarity=0.148 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccch
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRM 120 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 120 (497)
.+..|++++...|.+++.....+...+|+.+.+++++..+++++.+..+.++....+...++++..|..|+...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34588999999999999999999999999999999999999999999999998678888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhH
Q 010912 121 LGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALG----QDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFP 195 (497)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (497)
.++.+++++.....+.++.++. +.++++++..+. .+.+..+....++.+++++.++..+..++...+.+.+|+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999887 679999998663 25667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhcc
Q 010912 196 MMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQ 248 (497)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 248 (497)
+++.++.+.++|++++.++.. .+|..|.++|+.++..+..++++..++|+.
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999888 679999999999999999999998886544
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.72 E-value=6.3e-14 Score=136.65 Aligned_cols=231 Identities=16% Similarity=0.132 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchH
Q 010912 42 EEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRML 121 (497)
Q Consensus 42 ~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 121 (497)
+..|++.+...|..++...+++...+|+.+.+.+.+...+.+.++..+.++....+..++++...|..|+...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 56899999999999999999999999999999999999999999999999997789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHH
Q 010912 122 GIHTQRAMLTLLAVSIPLAII-WFYTSNILIALG----QDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPM 196 (497)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 196 (497)
++..+.++.++.+++++.++. ..+++|++..+. .+++....+...+..+.++.++..+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999987 669999998663 245566777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHH
Q 010912 197 MICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSA 276 (497)
Q Consensus 197 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~ 276 (497)
+++.+++.++|+.+++.+.. .+|..|.++++.++.++.+.++++..+|+..... . +.+..+. +.|..+-..
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~-----~~~~~~~-~~k~~l~~~ 459 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-G-----RGWGLFL-ILKLLLASA 459 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-----chhhHHH-HHHHHHHHH
Confidence 99999999999999977777 6788999999999999999999888865443322 1 1334444 555555444
Q ss_pred HHHHH
Q 010912 277 IMICL 281 (497)
Q Consensus 277 ~~~~~ 281 (497)
+....
T Consensus 460 i~~~~ 464 (518)
T COG0728 460 IMAAA 464 (518)
T ss_pred HHHHH
Confidence 44443
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.71 E-value=3e-15 Score=151.67 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh------h---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 010912 40 VIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGH-LGE------L---ALSSA-SIASSFASVSGFSVLLGMGSALETL 108 (497)
Q Consensus 40 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~ 108 (497)
.++.+|+++++++|.+++++...+...+|+.++++ +++ + .+|.+ +.+.++..+. ..+..+++++..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999988 432 1 23333 3455667776 67788999999999
Q ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 010912 109 CGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFL 187 (497)
Q Consensus 109 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 187 (497)
++++.|++|+++.++..++...+....+++.++. ..++++++..+..++ .+.++++++++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888876 668888888876443 35678999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 010912 188 QTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKF 246 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 246 (497)
++.||++.+++.++...++|++++++++....+|..|+++++++++++..++..+..+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998873236899999999999999999998887754
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=1.5e-17 Score=141.87 Aligned_cols=160 Identities=28% Similarity=0.423 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchHHHHHHHHHHHH
Q 010912 53 PLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTL 132 (497)
Q Consensus 53 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 132 (497)
|..+++++..+...+|+.+++++|++++++++++.++.++. ..+..|+++|..+.+|+++|++|+++.++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHH
Q 010912 133 LAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITA-LLHILV 210 (497)
Q Consensus 133 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 210 (497)
..++++..++ +.+.+++..+++.++++.+.+.+|+++..++.++..+.....+++++.|+++.+++.++.+. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 67999999999999999999999999999999999999999999999999999999999999 899988
Q ss_pred HHH
Q 010912 211 CWV 213 (497)
Q Consensus 211 ~~~ 213 (497)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 864
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.66 E-value=6.4e-13 Score=122.12 Aligned_cols=248 Identities=15% Similarity=0.194 Sum_probs=180.3
Q ss_pred HHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHH
Q 010912 63 CLQVISIMFVGH-LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAI 141 (497)
Q Consensus 63 ~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (497)
..+++...+++| +|++++|.++....+..+.......|+...... . .++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 799999999999999998855567888777555 1 2345556666666655544444433333
Q ss_pred HHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 010912 142 IWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLE 221 (497)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 221 (497)
+ ...+...+ .+++. ..++....+..++........+.+++.+|.+..........+........+... +.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 11122233 23222 234556667788888999999999999999999999999988875444444442 447
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 010912 222 SKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKL 301 (497)
Q Consensus 222 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 301 (497)
..+..++..+++++..++.+...+++ .+.. + +.+..| .++.+.|..+.+.........|.++++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK--LRLS--F----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cCCC--c----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 88888998899888887766644311 1111 1 223334 799999999999999999999999999954 499
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 010912 302 ETSVLSISLNTCWMVY-MISVGLGGAISTRVSNE 334 (497)
Q Consensus 302 ~~~~~~~~~~i~~~~~-~~~~~i~~~~~p~~~~~ 334 (497)
++|.|+++.++...+. .+..++++...|.++|.
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999888 89999999999999863
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.65 E-value=7.4e-13 Score=134.21 Aligned_cols=199 Identities=12% Similarity=0.085 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR 119 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 119 (497)
.+..|++++++.|.+.+++...+...+|+.++++ +|++++|.|+.+.++.+.....+...+++...|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4567999999999999999999999999999999 69999999999999998764555666778888999885 56778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 010912 120 MLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMI 198 (497)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 198 (497)
+.++.+++...+...+++++.+. ..++++++..+.+++ +..+...++++++...+..........+++.||+|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 88999999999988888888776 568889887765443 466788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 010912 199 CSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIK 245 (497)
Q Consensus 199 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 245 (497)
.+++..+++++..+.+.. .+|+.|+++++++++.+...+..++..
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888877766665 679999999999999999888887774
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.62 E-value=2.1e-13 Score=135.00 Aligned_cols=198 Identities=10% Similarity=-0.043 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVG-HLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR 119 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 119 (497)
++..|++++++.|..++++...+....|+.+++ ++|++++|.|+.+.++.......+..+++++..|.+++. +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 667899999999999999999999999999997 589999999999999987443778999999999999995 5677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 010912 120 MLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMI 198 (497)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 198 (497)
+.++..+........++++.+++ ++++++++.++.+++ ++.+.+++++++++.++...+..+...+.+.++.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888877766 578999999886543 334677888988988888888887777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 010912 199 CSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIK 245 (497)
Q Consensus 199 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 245 (497)
..+...++++++++++++ .+|..|+++++++++.+..++......
T Consensus 366 ~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999998 679999999999999999988776654
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.56 E-value=1.9e-12 Score=130.94 Aligned_cols=187 Identities=19% Similarity=0.248 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCccc
Q 010912 40 VIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQY 118 (497)
Q Consensus 40 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 118 (497)
..+..|+.++.++|...+++...+.+.+|+.++++ +|++++|.|+.+..+.... ..+...++.+..|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 36789999999999999999999999999999999 6999999999888888887 888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHH
Q 010912 119 RMLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMM 197 (497)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 197 (497)
++.++..++...+....+++..+. ..++++++..+.+++.. .+...+.++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999998887 66888888876554332 267788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHH
Q 010912 198 ICSAITALLHILVCWVLVFKSGLESKGAALSITIS 232 (497)
Q Consensus 198 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~ 232 (497)
+.+.++.++|++++++++. .+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 9999999999999999998 67999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.41 E-value=9.9e-10 Score=109.76 Aligned_cols=421 Identities=13% Similarity=0.015 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHhhcCcccchHHHHH
Q 010912 48 IWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFA-SVSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHT 125 (497)
Q Consensus 48 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~-~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 125 (497)
.+.+.-.++.+++..+.+++-+.++-| ++|+.+|..++-..+. +.+.+..=.++-.|.++.-.+...+++.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 455667788888888888877777766 7999999885544443 22223334567777555433331122333333333
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhHH--H--HHHc-CCChH---HHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHhcC
Q 010912 126 QRAMLTLLAVSIPLAIIWF--YTSN--I--LIAL-GQDHE---ISTGAGTYNRWMIPSLFAYGILQ----CLNRFLQTQN 191 (497)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~--~~~~--i--~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~----~~~~~l~~~~ 191 (497)
+....+..+.+++++.+.+ .+.+ + ..+. ...++ ..+.....+.+...+.+.-.+.. +.+..+.-..
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 3333344444443332211 1111 1 1111 11111 11222222333333333333333 3344444455
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhc-CCcc-----c-hhHHHHHHHHHHHHHHHHHHHh--hccc---cccccCCCCH
Q 010912 192 NVFPMMICSAITALLHILVCWVLVFKS-GLES-----K-GAALSITISNWVNVFFLAMYIK--FSQA---CIKTWTGFSA 259 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~li~~~-~~g~-----~-g~~~a~~i~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~ 259 (497)
|.+.-........+++..+.+...... +++. . -+.++..++++...+....... .... .+....+...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 555555566666666555444432210 1111 1 1245555666655543332211 1111 1111111111
Q ss_pred ---HHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 010912 260 ---EALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGL--LPNPKLETSVLSISLNTCWMV-YMISVGLGGAISTRVSN 333 (497)
Q Consensus 260 ---~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~p~~~~ 333 (497)
.....-++.++.....+..+..-.+....|.+++.. +.+ .++-|.|++++++.+++ -.+...+-.......++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011134788888999999999999999999999988 664 88999999999998874 45566788888888888
Q ss_pred HhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHH
Q 010912 334 ELGAGNS---------KGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQC 404 (497)
Q Consensus 334 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 404 (497)
...+++. ++..+.....+++...+++.+...-...++.+.+++.+++-....+...+++++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 8765433 4466677777888888887777777777788888887655333456899999999999999999
Q ss_pred HHHHHHHhcCcchhhHHHHHHH--HHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 405 MLSGAARGCGWQNLCAYINLGA--YYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 405 ~~~~~l~~~g~~~~~~~~~~~~--~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
+...+.++....+.....+-.. ..++.+..++++... ++|..|..+|.++.+.++.+....+.+|
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887766655422 123455667777655 6899999999999999999988777765
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.8e-07 Score=86.30 Aligned_cols=419 Identities=12% Similarity=-0.020 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhcCcccch
Q 010912 43 EATKQIWLAGPLIAVSLLQYCLQVISIMFVGH-LGELALSSASIASSFASVS-GFSVLLGMGSALETLCGQAFGAKQYRM 120 (497)
Q Consensus 43 ~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~-~~~~~~g~~~~~~~~~s~~~g~~~~~~ 120 (497)
...+..+.+...+..+++..+.+++-+.++-| ++++.+|..++-..+..-. .+..=..+.-|..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 34556666777777788877777765555555 7999999887655554321 1222234444433322221 123446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 010912 121 LGIHTQRAMLTLLAVSIPLAIIWF-YTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMIC 199 (497)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (497)
..+..+.+..++.+..+.+.-+++ +....-.... .+.-..-..+...+.+.-.+...+.-..|..-+.+.-.+.
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~-----~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWLGFLSSSDEISY-----SPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhc-----CchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 666666666666666655544432 2111100001 1111112233344444444444444455555556665666
Q ss_pred HHHHHHHH-HHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHHHHhhccc-ccc-----------ccCCCCHHHHHhH
Q 010912 200 SAITALLH-ILVCWVLVFKS-GLESKGAALSITISNWVNVFFLAMYIKFSQA-CIK-----------TWTGFSAEALHDI 265 (497)
Q Consensus 200 ~~~~~~~~-i~~~~~li~~~-~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~ 265 (497)
..+..++. +..-.+++.+. ..++.-.|+|.....+.-.+...++..+.++ .+. +....+......-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 66665555 33333333322 2233334444444333333322222222222 000 0011110011122
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC-chhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 010912 266 ISFIKLALPSAIMICLEYWSFEMVVLLSGLLPN-PKLETSVLSISLNTCWM-VYMISVGLGGAISTRVSNELGAGNSKGA 343 (497)
Q Consensus 266 ~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~p~~~~~~~~~~~~~~ 343 (497)
++..+.-.........-++...-+.++++.... .-.+-|.|.++++..++ .-++...+-......+++...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 344555555555666666666667776664321 12366788888887766 4455667777777777777776665555
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 010912 344 RL---ALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCA 420 (497)
Q Consensus 344 ~~---~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 420 (497)
++ ...+.++....+++.....-...++.+..++++++-....+...++++++..++.+++.+...+.++.+..+...
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 54 555666666666666666666667788888877553334567899999999999999999999999998776655
Q ss_pred HHHHHH--HHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 421 YINLGA--YYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 421 ~~~~~~--~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
..+-.. .-++.+.+++++... +|..|..+|.++.+.++.+....+.++
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433211 124456788888666 788999999999999998887666554
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.21 E-value=1.8e-09 Score=106.54 Aligned_cols=207 Identities=16% Similarity=0.141 Sum_probs=187.9
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Q 010912 262 LHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWM-VYMISVGLGGAISTRVSNELGAGNS 340 (497)
Q Consensus 262 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~p~~~~~~~~~~~ 340 (497)
..+.|++.+++.|..+....+.....++..+.++++ +.++++.++++...+. -+.+..++..+..|..++++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578899999999999999999999999999999998 5699999999888776 5667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 010912 341 KGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCA 420 (497)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 420 (497)
+.......++........+|.... +.+.+++...+..|+++...+..+.++.....+-..........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999998888888887754 4555999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhCC
Q 010912 421 YINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIATTN 472 (497)
Q Consensus 421 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 472 (497)
++..+. .++++++++++...+++|..|+..+..+++.........+.+...
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence 999998 789999999999999999999999999999998888776665543
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.97 E-value=4.8e-06 Score=74.86 Aligned_cols=315 Identities=12% Similarity=0.047 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCccc
Q 010912 42 EEATKQIWLAGPLIAVSLLQYCLQVISIMFVGH-L-G-ELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQY 118 (497)
Q Consensus 42 ~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 118 (497)
...+.+.++-+|+.++++...+.-.+-+.-++| - . .+.+++|+++..+.-++ ..+...+-+....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 346789999999999999999998888888887 3 2 35589999999998887 666766666644444 3333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhH
Q 010912 119 RMLGIHTQRAMLTLLAVSIPLAII-WF-YTSNIL-IALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFP 195 (497)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (497)
++.+..... ...+.+...+..++ +- ....++ ..++.++++.+.++..+.++.+.-++.++...+++++.-.+++..
T Consensus 82 srr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 332222222 22222222222333 32 333344 456788999999999999999999999999999999997777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcc-chhHH---HHHHHHHHH-HHHHHHHHhhccccccccCCCCHHHHHhHHHHHH
Q 010912 196 MMICSAITALLHILVCWVLVFKSGLES-KGAAL---SITISNWVN-VFFLAMYIKFSQACIKTWTGFSAEALHDIISFIK 270 (497)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~li~~~~~g~-~g~~~---a~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 270 (497)
....++...+..+++..+++.. ++.. ....+ +...+..+. ..+.+.|+..-........+....+...++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 7666666666666655555532 2222 22222 222222222 2222233222111111122222224456899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH----
Q 010912 271 LALPSAIMICLEYWSFEMVVLLSGLLPNPK----LETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKG---- 342 (497)
Q Consensus 271 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~---- 342 (497)
+.+|.+........+..+.+.++++..+|. ++++...+.+...-..+...+-+ .+..|..-++=.+++..+
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~~ 318 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGNP 318 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccCc
Confidence 999999999999999999999999954343 55666555554444333332221 223343322211111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Q 010912 343 -ARLALRVMIMIAITEGATVGITT 365 (497)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~i~~ 365 (497)
.+..+++.......+++.++..+
T Consensus 319 v~~~~~~kf~~~c~~~sl~~~f~~ 342 (345)
T PF07260_consen 319 VTQSHISKFVVLCLLLSLALCFVM 342 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12355565555566655555443
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.47 E-value=4.2e-05 Score=77.01 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCccc--
Q 010912 44 ATKQIWLAGPLIAVSLLQYCLQVISIMFVGH--L-GELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQY-- 118 (497)
Q Consensus 44 ~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~-- 118 (497)
-++.++.+......++...+.+--|.+++.. + +.++-|.|+++.++.+++.=.+..-+-.+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678899999999999999999999999999 5 7899999999999999886777778888888888887765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 010912 119 -------RMLGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQ 190 (497)
Q Consensus 119 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 190 (497)
++..+.+...+.+...+++++.++ ...++.++..++++....+.+...+++++..+|+.+++++..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 335567777777777777776666 456777777776554444456778999999999999999999999998
Q ss_pred CChhHH---HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 010912 191 NNVFPM---MICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKF 246 (497)
Q Consensus 191 ~~~~~~---~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 246 (497)
...+.. ........++.+..++++... ++|..|..+|.++...+..+..+.+.++
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 776544 444555556667778888875 6899999999999999998888888754
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.43 E-value=3e-05 Score=64.38 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=73.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 010912 167 NRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKF 246 (497)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 246 (497)
+++++++.++..+.....+.+++.||++..++.++.+.++|+++++++++ ++|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999988 7799999999999999999998888865
Q ss_pred c
Q 010912 247 S 247 (497)
Q Consensus 247 ~ 247 (497)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.25 E-value=0.00029 Score=65.19 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=112.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010912 271 LALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMI-SVGLGGAISTRVSNELGAGNSKGARLALRV 349 (497)
Q Consensus 271 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~ 349 (497)
-+......+........+...++++.. |+++.|.|+....+..+...+ ..|+.++..-..++...+ .++.++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~ 80 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSS 80 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHH
Confidence 344455555555555555566666555 399999999999999888776 558888887777776432 2333333333
Q ss_pred HHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 010912 350 MIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYA 429 (497)
Q Consensus 350 ~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 429 (497)
......+ ...+...... +...+..++ .+ ...........++..........+++.++.+.....++... +
T Consensus 81 ~~~~~~~-~~~i~~~~~~----~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 150 (273)
T PF01943_consen 81 VLFLLLI-FSLIFLLILL----IASFFGNPS--LS--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-L 150 (273)
T ss_pred HHHHHHH-HHHHHHHHHH----HHHHcCCch--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3333222 2222222222 222333322 11 11222222222578888889999999999999988888774 4
Q ss_pred hhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 010912 430 VGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 430 ~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 470 (497)
..+.+...+... ..+..+...+..++.++..++..+..+|
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333 2347888888889888887777766664
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.12 E-value=1.7e-05 Score=65.92 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010912 390 MPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIA 469 (497)
Q Consensus 390 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 469 (497)
+++++++.+++.+....+..+++.||+|..++.+.+. .++++++.+.+ .+++|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998 68899999998 56689999999999999999988888887
Q ss_pred hC
Q 010912 470 TT 471 (497)
Q Consensus 470 ~~ 471 (497)
|+
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=98.06 E-value=0.01 Score=55.10 Aligned_cols=322 Identities=12% Similarity=0.101 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHh
Q 010912 92 VSGFSVLLGMGSALETLCGQAFGAKQYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMI 171 (497)
Q Consensus 92 ~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 171 (497)
.+++.+..|++...++.+|...=++|++++..-+.....+....+.++..+.+ ...++... .|=....
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si-----~yk~l~~ 138 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSI-----VYKILAC 138 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhH-----HHHHHHH
Confidence 34466688999999999999887777777766665555555555444442211 11112211 1112334
Q ss_pred hhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccc
Q 010912 172 PSLFAYGILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACI 251 (497)
Q Consensus 172 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 251 (497)
......+...+...++.+.++.+...+.-.++.++.+.+..++- +.+..|..++..++......+...+..+.-+-+
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 45556666677778899999999999988888888887776655 458999999999999998888877775432222
Q ss_pred cccCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHH------HHHHHHHHHHHHHHHH----
Q 010912 252 KTWTGFSAEALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLPNPKLETSV------LSISLNTCWMVYMISV---- 321 (497)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~i~~~~~~~~~---- 321 (497)
.+. .+. .-+..+--....+.+....++.++|+++.=+.++|....+. |-+..-...+...|..
T Consensus 216 ~~i-~Fd------FL~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 216 RRI-GFD------FLLYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred ccc-cee------hhhhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 211 111 11112222345666777777888887754333332222222 2222222222222222
Q ss_pred -HHHHHHHHHHHHHhcC----C-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHH
Q 010912 322 -GLGGAISTRVSNELGA----G-------NSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKM 389 (497)
Q Consensus 322 -~i~~~~~p~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~ 389 (497)
.+-+...+.--+.+.+ + +.++.....+..+.-..-+-...++.++++++.+...+.-|+ .-.+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHH
Confidence 2333444443333321 2 233334455555555666677788889999999998887654 34556
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHH
Q 010912 390 MPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAF 440 (497)
Q Consensus 390 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 440 (497)
..+-.++...+...+..-.+..-..+-+..+..+..- ...|-.+.++...
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~ 414 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHH
Confidence 6666666666666666655656666777777666654 4556666666543
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.04 E-value=0.0039 Score=56.61 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=111.7
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010912 261 ALHDIISFIKLALPSAIMICLEYWSFEMVVLLSGLLP-NPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGN 339 (497)
Q Consensus 261 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~ 339 (497)
......+++++-+|..+++....+.-.+.+.-+++-. +..+.++.|+++..+..++..+...+-++....+. ++
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SK 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----ch
Confidence 4467889999999999999999999999888887633 22355999999999999999998888777665553 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHchhh-hhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcch
Q 010912 340 SKGARLALRVMIMIAITEGAT-VGITTILVRNV-WGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQN 417 (497)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 417 (497)
.++ ++........+...... ..+..--++.+ +.+++.-|+++.+.+...+.++.+..+++++.....+++.=.+++.
T Consensus 81 rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 222 22222222122222111 12222223333 3456677889999999999999999999999999998888666666
Q ss_pred hhHHHHHHH
Q 010912 418 LCAYINLGA 426 (497)
Q Consensus 418 ~~~~~~~~~ 426 (497)
.....++..
T Consensus 160 iV~~aSI~~ 168 (345)
T PF07260_consen 160 IVGSASIAD 168 (345)
T ss_pred EeehHHHHH
Confidence 666666654
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.003 Score=59.98 Aligned_cols=200 Identities=10% Similarity=0.082 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccchH
Q 010912 45 TKQIWLAGPLIAVSLLQYCLQVISIMFVGH---LGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRML 121 (497)
Q Consensus 45 k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 121 (497)
++..+.........++..+.+--|.++++- ++-++-|.|..+.++.+++.-.+...+.-..-.+.+|...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 456666666677777888888888888874 36667888888888888775666777777777777887776665554
Q ss_pred H---HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHH-
Q 010912 122 G---IHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPM- 196 (497)
Q Consensus 122 ~---~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 196 (497)
+ .++.+.+.+...++++...+ .-.+...+.+.+++......+...+++++..+++..++++..++..+....+-.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 4 46666666666666655555 446667777777655444455677999999999999999999999988765433
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 010912 197 --MICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKF 246 (497)
Q Consensus 197 --~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 246 (497)
....+...+..++.+++++- .+|..|..+|.++...+..+..+.+.++
T Consensus 399 ~~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888887 4577898888888888777777766643
No 45
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.94 E-value=0.0037 Score=57.03 Aligned_cols=164 Identities=13% Similarity=0.241 Sum_probs=105.0
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010912 289 VVLLSGLLPNPKLETSVLSISLNTCWMVYMIS-VGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTIL 367 (497)
Q Consensus 289 ~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~-~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 367 (497)
...++++.. |+++.|.|+....+..+...+. .++.+...- ..+++.++.++..+.......+.++...+..
T Consensus 7 ~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (251)
T PF13440_consen 7 FLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILA-- 78 (251)
T ss_pred HHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344555554 3899999999999888877764 344444322 2335666666666666555444444443332
Q ss_pred chhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHHhhcCCch
Q 010912 368 VRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGM 447 (497)
Q Consensus 368 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~ 447 (497)
..+...+ ++++ ...++.+..+..++..+.......+++.+|.+.......... +..+.+...+. ..+.+..
T Consensus 79 --~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 149 (251)
T PF13440_consen 79 --ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLW 149 (251)
T ss_pred --HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHH
Confidence 2223333 3332 345667777788889999999999999999999999988874 33333333332 2223788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 010912 448 GLWMGIICGLSMQIIALVTVIA 469 (497)
Q Consensus 448 g~~~a~~i~~~~~~~~~~~~~~ 469 (497)
+..++..++..+..+..+...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888887766655443
No 46
>PRK01637 hypothetical protein; Reviewed
Probab=91.58 E-value=12 Score=34.92 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhcccccchhhccCC
Q 010912 474 DHEATNALHRAQRTDSLTNMAMKS 497 (497)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~ 497 (497)
+....+.++....-+++||||+|.
T Consensus 263 na~~~~~~~~~~~~~~~~~~~~~~ 286 (286)
T PRK01637 263 TATLGEYRKLKQAAEQEEDDEPKK 286 (286)
T ss_pred HHHHHHHHHHhcccccccccccCC
Confidence 333333444445566677888884
No 47
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=71.20 E-value=84 Score=28.76 Aligned_cols=32 Identities=3% Similarity=-0.044 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 010912 316 VYMISVGLGGAISTRVSNELGAGNSKGARLAL 347 (497)
Q Consensus 316 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~ 347 (497)
...+...++..+....-++..++|+++.++..
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~ 140 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLH 140 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHH
Confidence 33445566667777777777788888876543
No 48
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=67.94 E-value=1.4e+02 Score=30.01 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--hhHHHHHHHHHHHHHHH
Q 010912 44 ATKQIWLAGPLIAVSLLQYCLQVISIMFVGH-LG--ELALSSASIASSFASVS 93 (497)
Q Consensus 44 ~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg--~~~~~~~~~~~~i~~~~ 93 (497)
+|+-+.++.+-+..++.....+.--..+... .| +...|..-...++...+
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi 63 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI 63 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 6778888888888888877777766666665 44 55555555555555554
No 49
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=66.80 E-value=1.5e+02 Score=29.95 Aligned_cols=34 Identities=6% Similarity=-0.150 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010912 42 EEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHL 75 (497)
Q Consensus 42 ~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l 75 (497)
..||.++-..+-.++...-..++....-.++..+
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l 64 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL 64 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeecchhhhhc
Confidence 3355566656556665555555555555566664
No 50
>COG4267 Predicted membrane protein [Function unknown]
Probab=63.18 E-value=1.5e+02 Score=28.65 Aligned_cols=141 Identities=18% Similarity=0.138 Sum_probs=88.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHh
Q 010912 312 TCWMVYMIS-VGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMM 390 (497)
Q Consensus 312 i~~~~~~~~-~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l 390 (497)
...++.++. .++.....-.+|...=+++.+++...+.-+..+.+..+..++...+ +.+++ +......
T Consensus 68 Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk~- 135 (467)
T COG4267 68 YCFIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYKI- 135 (467)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHHH-
Confidence 333444443 3455555555677776777888777777777666666665553221 11222 2222222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 010912 391 PLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVIA 469 (497)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 469 (497)
..+...+..+...+....+.+.++.+.....-.++ .++...++.++.. .+..|..++..++..+...+...+..
T Consensus 136 -l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Il 209 (467)
T COG4267 136 -LACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYIL 209 (467)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33445566777778888899999998888777776 5666666666644 48899999999998777666544443
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=60.75 E-value=1.7e+02 Score=28.59 Aligned_cols=39 Identities=3% Similarity=-0.089 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhc
Q 010912 338 GNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLY 376 (497)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~ 376 (497)
.+.++.+++.+++.+.+........++..+..-|+...-
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999998888887777777633
No 52
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=58.56 E-value=68 Score=23.26 Aligned_cols=40 Identities=25% Similarity=0.158 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 010912 321 VGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGAT 360 (497)
Q Consensus 321 ~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (497)
.-++-.....+-+.+.+||++++++.-+++.+++.+-.+.
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3344455567888888999999999999988776544333
No 53
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=54.68 E-value=2.6e+02 Score=28.75 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ChhHHHHHHHHHHHHHHH
Q 010912 46 KQIWLAGPLIAVSLLQYCLQVISIMFVGHL--GELALSSASIASSFASVS 93 (497)
Q Consensus 46 ~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~~~~~~~~~~~~i~~~~ 93 (497)
.+..+..-..++++...+....-..++..+ ++..+|....+..+..++
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~L 60 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILL 60 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344555667778888888887777777765 466677777776666654
No 54
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.08 E-value=46 Score=22.42 Aligned_cols=6 Identities=17% Similarity=0.075 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010912 474 DHEATN 479 (497)
Q Consensus 474 ~~~~~~ 479 (497)
+....+
T Consensus 35 K~~~d~ 40 (60)
T COG4736 35 KGEFDE 40 (60)
T ss_pred hhhHHH
Confidence 333333
No 55
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=45.57 E-value=1.3e+02 Score=29.35 Aligned_cols=15 Identities=7% Similarity=-0.175 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010912 351 IMIAITEGATVGITT 365 (497)
Q Consensus 351 ~~~~~~~~~~~~i~~ 365 (497)
-++.+.+.+|..++-
T Consensus 34 s~lv~~~~lP~liF~ 48 (385)
T PF03547_consen 34 SKLVFNVFLPALIFS 48 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555544433
No 56
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=42.60 E-value=3.4e+02 Score=26.57 Aligned_cols=35 Identities=9% Similarity=0.198 Sum_probs=28.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 010912 117 QYRMLGIHTQRAMLTLLAVSIPLAII-WFYTSNILI 151 (497)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 151 (497)
++++.+++++.+...+.....+..++ ....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999988776 556666665
No 57
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=42.09 E-value=3.9e+02 Score=27.21 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhc----CCccchhHHHHHHHHHHHHHHHH
Q 010912 178 GILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKS----GLESKGAALSITISNWVNVFFLA 241 (497)
Q Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~ 241 (497)
+...+....+.-.++.....+......+.++...++-.... ..+..|--|..++..++......
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence 44555666667777776666666666666665554433311 13555555666666666555544
No 58
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=40.58 E-value=85 Score=29.65 Aligned_cols=55 Identities=7% Similarity=0.196 Sum_probs=28.3
Q ss_pred cchhhHHHHHHHHHHhhHhHHHHHHHhhcCC---------chhHHHHHHHHHHHHHHHHHHHHHhCCc
Q 010912 415 WQNLCAYINLGAYYAVGIPSAVLFAFFLHIG---------GMGLWMGIICGLSMQIIALVTVIATTNW 473 (497)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g---------~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 473 (497)
..+..-..++++ ++.+|..++.+.+. ++ .+|.+++ ....++..+..++++||++|
T Consensus 254 ~N~~mk~LTvvt--~IflP~t~IaGiyG-MNf~~mP~l~~~~gy~~~-l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 254 MNEIMKILTVVS--TIFIPLTFIAGIYG-MNFKFMPELNWKYGYPAV-LIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHh-CCcccCccccchhHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 334444455554 34567776655431 11 1233333 33334444556778888887
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.47 E-value=41 Score=26.55 Aligned_cols=6 Identities=17% Similarity=0.019 Sum_probs=2.3
Q ss_pred HHHHHh
Q 010912 465 VTVIAT 470 (497)
Q Consensus 465 ~~~~~~ 470 (497)
.++.+|
T Consensus 85 ~y~irR 90 (122)
T PF01102_consen 85 SYCIRR 90 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333343
No 60
>PF14184 YrvL: Regulatory protein YrvL
Probab=38.81 E-value=2.1e+02 Score=23.05 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010912 126 QRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEI-STGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMICSAITA 204 (497)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 204 (497)
...+...+...++.+...+....+.+++|.+-+. .....-.+.....+.++..+.......+.-.+.++... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 3444444455555555455666778888765332 22333333444667777777777776666664444443 24445
Q ss_pred HHHHHHHHHHHhhcCCccchhHHHH
Q 010912 205 LLHILVCWVLVFKSGLESKGAALSI 229 (497)
Q Consensus 205 ~~~i~~~~~li~~~~~g~~g~~~a~ 229 (497)
.+....++..++..+.=+.++.+.+
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is~ 107 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISIST 107 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeCc
Confidence 6777777777775543334444433
No 61
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=38.22 E-value=2.3e+02 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010912 339 NSKGARLALRVMIMIAITEGATVGITTI 366 (497)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 366 (497)
+.++-++..++....++.++++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888887777777766665
No 62
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.46 E-value=1e+02 Score=29.28 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=22.8
Q ss_pred HhhHhHHHHHHHhhcCCc---------hhHHHHHHHHHHHHHHHHHHHHHhCCc
Q 010912 429 AVGIPSAVLFAFFLHIGG---------MGLWMGIICGLSMQIIALVTVIATTNW 473 (497)
Q Consensus 429 ~~~i~~~~~l~~~~~~g~---------~g~~~a~~i~~~~~~~~~~~~~~~~~~ 473 (497)
++.+|+.++.+.+. ++. +|.+ ..++..++..+..++++||++|
T Consensus 272 ~IflPlT~IaGiyG-MNf~~mPel~~~~gy~-~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 272 MVFLPTTFLTGLFG-VNLGGIPGGGWPFGFS-IFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHhhhc-cccCCCCCcCCcchHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 34567777765541 111 2333 3333344444556677888777
No 63
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=35.82 E-value=1.6e+02 Score=26.00 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 010912 117 QYRMLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQ 155 (497)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (497)
+++...+.+..++...+++.++++++..+..++..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 444555555555555555555555556667777777764
No 64
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=35.62 E-value=1.2e+02 Score=28.57 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHHHhhHhHHHHHHHhhcCCc---------hhHHHHHHHHHHHHHHHHHHHHHhCCc
Q 010912 416 QNLCAYINLGAYYAVGIPSAVLFAFFLHIGG---------MGLWMGIICGLSMQIIALVTVIATTNW 473 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~---------~g~~~a~~i~~~~~~~~~~~~~~~~~~ 473 (497)
.+..-+.++++ ++.+|..++.+.+. ++. .|.+ ..+...++..++.+++++|++|
T Consensus 253 N~~mk~lTv~s--~if~pptliagiyG-MNf~~mP~~~~~~g~~-~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 253 NRIIKIFSVVS--VVFLPPTLVASSYG-MNFEFMPELKWSFGYP-GAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhhcc-cccCCCCCCCCcHHHH-HHHHHHHHHHHHHHHHHHHccc
Confidence 33344444444 44566666655431 111 2333 3333444445556778888777
No 65
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=34.43 E-value=3.7e+02 Score=24.71 Aligned_cols=32 Identities=3% Similarity=-0.131 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 010912 317 YMISVGLGGAISTRVSNELGAGNSKGARLALR 348 (497)
Q Consensus 317 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~ 348 (497)
..+...++..+.+..-++..++|+++.++...
T Consensus 111 ~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~ 142 (267)
T PRK09757 111 ILFFYSAFSLFMTKADKCAKEADTAAFSRLNW 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 34455667777777777777888888765433
No 66
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=34.07 E-value=3.7e+02 Score=24.58 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHchhhhhhhc
Q 010912 316 VYMISVGLGGAISTRVSNELGAGNSKGARLALRVMI-MIAITEGATVGITTILVRNVWGKLY 376 (497)
Q Consensus 316 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~i~~l~ 376 (497)
...+...+...+....=++-.++|.+.+++....+. ........|..+..++..+.+-.++
T Consensus 109 l~~~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l 170 (265)
T COG3715 109 LTTFVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLL 170 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334445666666666667777788888888777766 3444445555555555455444444
No 67
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.87 E-value=66 Score=23.20 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=2.9
Q ss_pred HHHHhCCcHHHHHHHHhh
Q 010912 466 TVIATTNWDHEATNALHR 483 (497)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~ 483 (497)
..++|.++.++..+..+|
T Consensus 28 ieYrk~~rqrkId~li~R 45 (81)
T PF00558_consen 28 IEYRKIKRQRKIDRLIER 45 (81)
T ss_dssp -----------CHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 344454444444443333
No 68
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=31.41 E-value=4e+02 Score=24.22 Aligned_cols=81 Identities=10% Similarity=-0.060 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcch
Q 010912 338 GNSKGARLALRVMIMIAITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQN 417 (497)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 417 (497)
+..+.+++....+..++...++.=++.-+.+++ ..++.++.+.+..+...++. .-..++..++......-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~-~~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWF-ISSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHH-HHHHHHHHHHHHHHHHHhcccccc
Confidence 455666666666666666666666666666665 55565555545444443333 333344444444433345555555
Q ss_pred hhHH
Q 010912 418 LCAY 421 (497)
Q Consensus 418 ~~~~ 421 (497)
.|.+
T Consensus 186 LPar 189 (261)
T PF10160_consen 186 LPAR 189 (261)
T ss_pred CCCC
Confidence 5544
No 69
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=27.63 E-value=6.4e+02 Score=25.32 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhcC
Q 010912 323 LGGAISTRVSNELGA 337 (497)
Q Consensus 323 i~~~~~p~~~~~~~~ 337 (497)
++....-.++..+++
T Consensus 303 ig~~~~G~lsDr~~~ 317 (476)
T PLN00028 303 FARPAGGYLSDVAAR 317 (476)
T ss_pred HHHhhhHHHHHHHHH
Confidence 333333444544443
No 70
>COG5393 Predicted membrane protein [Function unknown]
Probab=26.97 E-value=3.1e+02 Score=21.38 Aligned_cols=42 Identities=7% Similarity=-0.075 Sum_probs=25.3
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Q 010912 441 FLHIGGMGLWMGIICGLSMQIIALVTVIATTNWDHEATNALH 482 (497)
Q Consensus 441 ~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (497)
.+.+-.+.....+++-+++..+...|.+++...........+
T Consensus 77 ~~tyRl~a~~a~~~vl~vl~~i~ciW~lrks~~s~l~~aT~~ 118 (131)
T COG5393 77 DPTYRLNAMIATTAVLLVLALIGCIWTLRKSRKSTLLRATRH 118 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 333445556667777777777778888777544443333333
No 71
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=26.91 E-value=5.3e+02 Score=24.17 Aligned_cols=43 Identities=2% Similarity=-0.118 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHH--HHHHHHHHHHHHHHchh
Q 010912 328 STRVSNELGAGNSKGARLALRVMIMI--AITEGATVGITTILVRN 370 (497)
Q Consensus 328 ~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~ 370 (497)
.-.+.+.++.++.....+.....+.. +....+.+++.+.+..+
T Consensus 122 ~~~lN~i~~~~~~r~~~~~~l~~l~~~i~~~~~l~~~l~l~v~~~ 166 (303)
T COG1295 122 RDALNKIWRVKPRRSFIRRRLLSLFWTLGTLLPLLFALLLSVVGP 166 (303)
T ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777766644444433333333 33333333333444444
No 72
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=26.87 E-value=2.7e+02 Score=23.38 Aligned_cols=51 Identities=12% Similarity=-0.081 Sum_probs=27.7
Q ss_pred cchhhHHHHHHHHHHhhHhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 010912 415 WQNLCAYINLGAYYAVGIPSAVLFAFFLHIGGMGLWMGIICGLSMQIIALVTVI 468 (497)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~ 468 (497)
+....++.+.. ++.+.-.|++..++++.+..-++-..+...++..+..+-+
T Consensus 16 k~~alfY~nA~---ivS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAY 66 (170)
T PF07074_consen 16 KSSALFYGNAL---IVSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAY 66 (170)
T ss_pred ccceehhhHHH---HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 34444554432 3333344555566677777666666666666655544433
No 73
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=26.24 E-value=80 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010912 451 MGIICGLSMQIIALVTVIAT 470 (497)
Q Consensus 451 ~a~~i~~~~~~~~~~~~~~~ 470 (497)
+..+++.++..+..+.+.-+
T Consensus 9 IviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 9 IVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHhHHHHHHHhcc
Confidence 34445555555555544444
No 74
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.17 E-value=4.1e+02 Score=25.14 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=34.5
Q ss_pred HHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHhHHHHHHHhhc-------CC-chhHHHHHHHHHHHHHHHHHHHHH
Q 010912 398 FLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIPSAVLFAFFLH-------IG-GMGLWMGIICGLSMQIIALVTVIA 469 (497)
Q Consensus 398 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-------~g-~~g~~~a~~i~~~~~~~~~~~~~~ 469 (497)
.+..+.....+.. +.......-..++++ ++.+|..++.+.+.. .+ -+|.|++..+. ++..++.+++++
T Consensus 242 ~l~~l~d~~~s~i-s~~~N~imk~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m-~~~~~~~~~~fr 317 (322)
T COG0598 242 RLSSLLDAYLSLI-NNNQNEIMKILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILM-LLLALLLYLYFR 317 (322)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHH-HHHHHHHHHHHH
Confidence 3333444443333 233333333444444 345677766654411 11 23555554444 444455667777
Q ss_pred hCCc
Q 010912 470 TTNW 473 (497)
Q Consensus 470 ~~~~ 473 (497)
|++|
T Consensus 318 rk~W 321 (322)
T COG0598 318 RKGW 321 (322)
T ss_pred hcCc
Confidence 8777
No 75
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=24.51 E-value=4.6e+02 Score=24.93 Aligned_cols=42 Identities=5% Similarity=-0.284 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHH
Q 010912 383 IKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINL 424 (497)
Q Consensus 383 ~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 424 (497)
.+....+..+.....++..++.....+++..++.-.+.....
T Consensus 232 i~ST~aI~~i~~~Q~i~~~iys~~v~~l~~~~~~i~~~~~~~ 273 (328)
T PF02117_consen 232 INSTKAICIISISQFICMFIYSFGVFILRNFRSSISPETFHN 273 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 444555555555556667777777777776665554444433
No 76
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.90 E-value=8.9e+02 Score=24.62 Aligned_cols=104 Identities=8% Similarity=0.044 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHhhccccccccCCC
Q 010912 178 GILQCLNRFLQTQNNVFPMMICSAITALLHILVCWVLVFKSGLESKGAALSITISNWVNVFFLAMYIKFSQACIKTWTGF 257 (497)
Q Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (497)
-....+.+.+...+..+-.-...+.+...-+....++....+.|..-.+..+.+...+..++..+..++..+..+.|...
T Consensus 152 ~y~~~Yer~LeSl~~~~diY~sll~S~tf~v~~i~i~~il~~~~~~~~l~ls~~~~~~~~~l~l~~i~~~~P~dp~~h~~ 231 (527)
T COG1955 152 EYETEYERALESLDVWKDIYVSLLVSLTFLVAFILILPILYGGNTTLILYLSLLAVFAIEILLLYVIFKALPKDPLWHRL 231 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHheeeecCCcchhccC
Confidence 45566667777777766554444454444333333333333556644555555666665666666665555544445443
Q ss_pred CHH--HHHhHHHHHHHHhHHHHHHHH
Q 010912 258 SAE--ALHDIISFIKLALPSAIMICL 281 (497)
Q Consensus 258 ~~~--~~~~~~~i~~~~~p~~~~~~~ 281 (497)
+.+ +-..+++....++|.....+.
T Consensus 232 ~~kt~~~~~i~~~~~isi~l~~iv~i 257 (527)
T COG1955 232 RIKTKEQIKIRRLAIISITLSAIVLI 257 (527)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 334567777777766555444
No 77
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.84 E-value=1.7e+02 Score=19.95 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010912 455 CGLSMQIIA 463 (497)
Q Consensus 455 i~~~~~~~~ 463 (497)
++.++..++
T Consensus 30 ~G~llg~l~ 38 (68)
T PF06305_consen 30 LGALLGWLL 38 (68)
T ss_pred HHHHHHHHH
Confidence 333333333
No 78
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=20.13 E-value=8.8e+02 Score=24.21 Aligned_cols=56 Identities=7% Similarity=-0.041 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010912 300 KLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMIAITEGATVGITT 365 (497)
Q Consensus 300 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 365 (497)
..-+++|+.... .......|.+++..-+.+..+.-+.....-+.++..+..+...+
T Consensus 37 Ll~~siygl~~~----------~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l 92 (432)
T PF06963_consen 37 LLPVSIYGLVRS----------LSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLL 92 (432)
T ss_pred cHHHHHHHHHHH----------HHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566665443 33445678899998776666655555555555555554444333
Done!